Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51984.t1 | XP_003598354.1 | 94.7 | 322 | 17 | 0 | 1 | 322 | 1 | 322 | 4.40E-163 | 583.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51984.t1 | Q9LES3 | 50.3 | 316 | 122 | 9 | 14 | 322 | 10 | 297 | 9.6e-58 | 225.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51984.t1 | G7IVG7 | 94.7 | 322 | 17 | 0 | 1 | 322 | 1 | 322 | 3.2e-163 | 583.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene51984.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51984.t1 | MTR_3g010660 | 96.273 | 322 | 12 | 0 | 1 | 322 | 1 | 322 | 0.0 | 641 |
| MS.gene51984.t1 | MTR_8g043960 | 65.260 | 308 | 92 | 4 | 16 | 322 | 20 | 313 | 8.33e-138 | 393 |
| MS.gene51984.t1 | MTR_7g088090 | 49.530 | 319 | 127 | 9 | 20 | 320 | 16 | 318 | 1.45e-83 | 255 |
| MS.gene51984.t1 | MTR_6g026800 | 48.824 | 340 | 137 | 10 | 1 | 322 | 1 | 321 | 6.28e-79 | 243 |
| MS.gene51984.t1 | MTR_4g085910 | 36.765 | 340 | 152 | 13 | 20 | 301 | 18 | 352 | 2.77e-44 | 155 |
| MS.gene51984.t1 | MTR_5g088230 | 46.067 | 178 | 76 | 6 | 1 | 170 | 1 | 166 | 1.03e-34 | 127 |
| MS.gene51984.t1 | MTR_5g088230 | 57.955 | 88 | 37 | 0 | 235 | 322 | 182 | 269 | 8.09e-23 | 95.9 |
| MS.gene51984.t1 | MTR_5g088230 | 46.629 | 178 | 70 | 7 | 1 | 170 | 1 | 161 | 2.00e-33 | 124 |
| MS.gene51984.t1 | MTR_5g088230 | 57.955 | 88 | 37 | 0 | 235 | 322 | 177 | 264 | 8.26e-23 | 95.9 |
| MS.gene51984.t1 | MTR_2g086390 | 34.589 | 292 | 122 | 10 | 23 | 294 | 11 | 253 | 2.69e-33 | 124 |
| MS.gene51984.t1 | MTR_2g086390 | 34.589 | 292 | 122 | 10 | 23 | 294 | 11 | 253 | 3.87e-33 | 124 |
| MS.gene51984.t1 | MTR_2g086340 | 35.932 | 295 | 153 | 10 | 12 | 294 | 14 | 284 | 3.22e-27 | 108 |
| MS.gene51984.t1 | MTR_3g101780 | 48.361 | 122 | 56 | 2 | 19 | 138 | 26 | 142 | 7.04e-27 | 109 |
| MS.gene51984.t1 | MTR_3g101780 | 42.202 | 109 | 60 | 1 | 189 | 297 | 293 | 398 | 7.51e-18 | 84.0 |
| MS.gene51984.t1 | MTR_5g060990 | 28.378 | 296 | 169 | 7 | 16 | 273 | 8 | 298 | 4.58e-20 | 89.0 |
| MS.gene51984.t1 | MTR_7g104480 | 43.939 | 132 | 55 | 4 | 26 | 138 | 45 | 176 | 1.05e-19 | 89.4 |
| MS.gene51984.t1 | MTR_4g094390 | 42.718 | 103 | 53 | 2 | 196 | 296 | 77 | 175 | 1.18e-13 | 68.9 |
| MS.gene51984.t1 | MTR_8g075130 | 46.988 | 83 | 40 | 2 | 243 | 322 | 97 | 178 | 6.28e-13 | 66.6 |
| MS.gene51984.t1 | MTR_1g098590 | 62.745 | 51 | 19 | 0 | 246 | 296 | 157 | 207 | 3.03e-12 | 65.9 |
| MS.gene51984.t1 | MTR_7g015990 | 68.000 | 50 | 13 | 1 | 251 | 297 | 120 | 169 | 3.32e-12 | 64.7 |
| MS.gene51984.t1 | MTR_1g098590 | 62.745 | 51 | 19 | 0 | 246 | 296 | 157 | 207 | 3.91e-12 | 65.1 |
| MS.gene51984.t1 | MTR_1g098590 | 62.745 | 51 | 19 | 0 | 246 | 296 | 157 | 207 | 4.63e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51984.t1 | AT3G56850 | 52.215 | 316 | 116 | 9 | 14 | 322 | 10 | 297 | 4.36e-87 | 263 |
| MS.gene51984.t1 | AT2G41070 | 48.418 | 316 | 101 | 10 | 10 | 322 | 6 | 262 | 7.24e-75 | 231 |
| MS.gene51984.t1 | AT2G41070 | 48.418 | 316 | 101 | 10 | 10 | 322 | 6 | 262 | 7.24e-75 | 231 |
| MS.gene51984.t1 | AT2G41070 | 48.418 | 316 | 101 | 10 | 10 | 322 | 6 | 262 | 7.24e-75 | 231 |
| MS.gene51984.t1 | AT2G41070 | 48.418 | 316 | 101 | 10 | 10 | 322 | 15 | 271 | 9.52e-75 | 231 |
| MS.gene51984.t1 | AT2G41070 | 47.931 | 290 | 89 | 10 | 10 | 296 | 6 | 236 | 8.21e-64 | 202 |
| MS.gene51984.t1 | AT1G49720 | 34.024 | 338 | 163 | 7 | 18 | 296 | 21 | 357 | 1.39e-44 | 157 |
| MS.gene51984.t1 | AT1G49720 | 34.024 | 338 | 163 | 7 | 18 | 296 | 21 | 357 | 1.39e-44 | 157 |
| MS.gene51984.t1 | AT1G49720 | 34.024 | 338 | 163 | 7 | 18 | 296 | 21 | 357 | 1.66e-44 | 157 |
| MS.gene51984.t1 | AT2G36270 | 31.463 | 410 | 166 | 13 | 12 | 315 | 30 | 430 | 2.35e-36 | 136 |
| MS.gene51984.t1 | AT2G36270 | 31.463 | 410 | 166 | 13 | 12 | 315 | 30 | 430 | 2.35e-36 | 136 |
| MS.gene51984.t1 | AT2G36270 | 32.011 | 378 | 152 | 12 | 12 | 293 | 30 | 398 | 1.04e-34 | 131 |
| MS.gene51984.t1 | AT3G44460 | 38.079 | 302 | 134 | 13 | 14 | 294 | 22 | 291 | 9.59e-31 | 119 |
| MS.gene51984.t1 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 4.93e-25 | 104 |
| MS.gene51984.t1 | AT3G19290 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 5.39e-14 | 72.8 |
| MS.gene51984.t1 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 4.93e-25 | 104 |
| MS.gene51984.t1 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 5.68e-25 | 104 |
| MS.gene51984.t1 | AT3G19290 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 6.54e-14 | 72.4 |
| MS.gene51984.t1 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 5.68e-25 | 104 |
| MS.gene51984.t1 | AT3G19290 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 6.54e-14 | 72.4 |
| MS.gene51984.t1 | AT3G19290 | 43.046 | 151 | 65 | 3 | 9 | 138 | 21 | 171 | 5.90e-25 | 104 |
| MS.gene51984.t1 | AT3G19290 | 37.857 | 140 | 64 | 4 | 178 | 296 | 260 | 397 | 6.99e-14 | 72.4 |
| MS.gene51984.t1 | AT5G42910 | 28.533 | 368 | 175 | 13 | 20 | 319 | 20 | 367 | 1.96e-23 | 99.4 |
| MS.gene51984.t1 | AT4G34000 | 34.715 | 193 | 77 | 6 | 19 | 171 | 26 | 209 | 1.19e-21 | 95.5 |
| MS.gene51984.t1 | AT4G34000 | 60.000 | 60 | 24 | 0 | 237 | 296 | 359 | 418 | 2.03e-15 | 77.0 |
| MS.gene51984.t1 | AT4G34000 | 34.715 | 193 | 77 | 6 | 19 | 171 | 26 | 209 | 1.22e-21 | 95.5 |
| MS.gene51984.t1 | AT4G34000 | 60.000 | 65 | 25 | 1 | 237 | 301 | 359 | 422 | 2.47e-15 | 76.6 |
| MS.gene51984.t1 | AT4G34000 | 34.715 | 193 | 77 | 6 | 19 | 171 | 26 | 209 | 1.22e-21 | 95.5 |
| MS.gene51984.t1 | AT4G34000 | 60.000 | 65 | 25 | 1 | 237 | 301 | 359 | 422 | 2.47e-15 | 76.6 |
| MS.gene51984.t1 | AT4G34000 | 34.715 | 193 | 77 | 6 | 19 | 171 | 26 | 209 | 1.22e-21 | 95.5 |
| MS.gene51984.t1 | AT4G34000 | 60.000 | 65 | 25 | 1 | 237 | 301 | 359 | 422 | 2.47e-15 | 76.6 |
| MS.gene51984.t1 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 2.25e-21 | 94.0 |
| MS.gene51984.t1 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 2.25e-21 | 94.0 |
| MS.gene51984.t1 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.28e-21 | 93.6 |
| MS.gene51984.t1 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.28e-21 | 93.6 |
| MS.gene51984.t1 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.28e-21 | 93.6 |
| MS.gene51984.t1 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.28e-21 | 93.6 |
| MS.gene51984.t1 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 3.87e-21 | 93.6 |
| MS.gene51984.t1 | AT1G45249 | 39.860 | 143 | 61 | 5 | 195 | 320 | 280 | 414 | 5.46e-18 | 84.3 |
| MS.gene51984.t1 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 36 | 166 | 4.81e-21 | 93.6 |
| MS.gene51984.t1 | AT1G45249 | 39.860 | 143 | 61 | 5 | 195 | 320 | 295 | 429 | 7.36e-18 | 84.3 |
| MS.gene51984.t1 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 36 | 166 | 4.81e-21 | 93.6 |
| MS.gene51984.t1 | AT1G45249 | 39.860 | 143 | 61 | 5 | 195 | 320 | 295 | 429 | 7.36e-18 | 84.3 |
| MS.gene51984.t1 | AT1G45249 | 41.791 | 134 | 60 | 3 | 20 | 138 | 21 | 151 | 5.01e-21 | 93.2 |
| MS.gene51984.t1 | AT1G45249 | 37.013 | 154 | 61 | 6 | 195 | 320 | 280 | 425 | 3.56e-15 | 76.3 |
| MS.gene51984.t1 | AT4G35900 | 51.163 | 86 | 40 | 2 | 237 | 322 | 202 | 285 | 1.92e-16 | 78.6 |
| MS.gene51984.t1 | AT2G17770 | 41.228 | 114 | 62 | 3 | 212 | 322 | 84 | 195 | 1.56e-14 | 71.6 |
| MS.gene51984.t1 | AT5G44080 | 32.353 | 204 | 91 | 8 | 96 | 297 | 120 | 278 | 2.66e-14 | 72.8 |
| MS.gene51984.t1 | AT1G03970 | 31.373 | 204 | 84 | 6 | 96 | 297 | 85 | 234 | 3.12e-14 | 72.0 |
Find 72 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCGACGAAGCTGGCATTT+AGG | 0.252772 | 3.4:+6436808 | None:intergenic |
| AGAAGACGGTTGATGAAGTT+TGG | 0.321664 | 3.4:-6438508 | MS.gene51984:CDS |
| GATTCAACAACACTGACTTT+AGG | 0.341594 | 3.4:+6438335 | None:intergenic |
| TTTGGGTGAGATGACATTAG+AGG | 0.364587 | 3.4:-6438426 | MS.gene51984:CDS |
| TCAACCGTCTTCTTGCTTAA+CGG | 0.378968 | 3.4:+6438518 | None:intergenic |
| ACGAAGCTGGCATTTAGGTT+CGG | 0.387515 | 3.4:+6436813 | None:intergenic |
| TCAAGAGATGCAGTCTACTT+TGG | 0.394291 | 3.4:-6438444 | MS.gene51984:CDS |
| GCCACCTGACCATCTGTATA+CGG | 0.395127 | 3.4:+6438152 | None:intergenic |
| CGAAGCTGGCATTTAGGTTC+GGG | 0.399153 | 3.4:+6436814 | None:intergenic |
| GGTTAAAGCAGGCGTTGTTT+CGG | 0.403853 | 3.4:-6438396 | MS.gene51984:CDS |
| CAACCTAATCTGTCGTTAAC+CGG | 0.406252 | 3.4:-6438542 | MS.gene51984:CDS |
| CAAGAGATGCAGTCTACTTT+GGG | 0.419918 | 3.4:-6438443 | MS.gene51984:CDS |
| CAGAATCACTTAGGTGACTT+AGG | 0.427650 | 3.4:-6438689 | MS.gene51984:CDS |
| AGAAGAGGATGATTAAGAAT+CGG | 0.435534 | 3.4:-6438031 | MS.gene51984:CDS |
| TCAAGGTTCATACTACTTAG+TGG | 0.444599 | 3.4:+6438662 | None:intergenic |
| CCAGAGGCTGGAATTGCGGT+TGG | 0.447255 | 3.4:+6438753 | None:intergenic |
| GAAGAGGATGATTAAGAATC+GGG | 0.454965 | 3.4:-6438030 | MS.gene51984:CDS |
| CGCAATTCCAGCCTCTGGCC+CGG | 0.460355 | 3.4:-6438748 | MS.gene51984:CDS |
| CAGTCATTGCACATGGCAGC+CGG | 0.472274 | 3.4:-6438194 | MS.gene51984:CDS |
| CAAAGTCTCGCGTCTGGAAG+AGG | 0.475416 | 3.4:-6437845 | MS.gene51984:CDS |
| GGACCGGTTAACGACAGATT+AGG | 0.482657 | 3.4:+6438539 | None:intergenic |
| GCGCTCAAGAGCAAGGAAAC+AGG | 0.483729 | 3.4:-6437997 | MS.gene51984:intron |
| GGAGATCAAAGTCTCGCGTC+TGG | 0.487266 | 3.4:-6437851 | MS.gene51984:CDS |
| TCAGATAAGTTTCTTACCAC+TGG | 0.495299 | 3.4:+6438119 | None:intergenic |
| CATGGCAGCCGGTGCTCCAT+CGG | 0.496616 | 3.4:-6438183 | MS.gene51984:CDS |
| GATGAAGTTCAGAATCACTT+AGG | 0.504785 | 3.4:-6438698 | MS.gene51984:CDS |
| TCTGAACTTCATCAAGGGTA+AGG | 0.505070 | 3.4:+6438708 | None:intergenic |
| GTCCTCTCAATCATGTCCTC+CGG | 0.505376 | 3.4:+6438068 | None:intergenic |
| ATCTGCGAGAAAGCGGGGAC+CGG | 0.507079 | 3.4:-6438087 | MS.gene51984:CDS |
| CGTCTTCTTGCTTAACGGAC+CGG | 0.507684 | 3.4:+6438523 | None:intergenic |
| TGGCATTTAGGTTCGGGTGG+TGG | 0.513608 | 3.4:+6436820 | None:intergenic |
| GACTGAGCTATGATCTGGCT+CGG | 0.527606 | 3.4:+6438212 | None:intergenic |
| CTGTTGAGAGGAAGCAGAAG+AGG | 0.527853 | 3.4:-6438046 | MS.gene51984:CDS |
| TACAGATGGTCAGGTGGCGT+TGG | 0.529554 | 3.4:-6438147 | MS.gene51984:CDS |
| ACAGAAATCTGCGAGAAAGC+GGG | 0.534375 | 3.4:-6438093 | MS.gene51984:CDS |
| AACGAGGACACAGCGCAAGC+CGG | 0.540740 | 3.4:-6438584 | MS.gene51984:CDS |
| CGGGCCAGAGGCTGGAATTG+CGG | 0.542304 | 3.4:+6438749 | None:intergenic |
| AGTGATTCTGAACTTCATCA+AGG | 0.543380 | 3.4:+6438702 | None:intergenic |
| CCAACCGCAATTCCAGCCTC+TGG | 0.545024 | 3.4:-6438753 | MS.gene51984:CDS |
| AACGCCGTCCGATGGAGCAC+CGG | 0.546844 | 3.4:+6438175 | None:intergenic |
| CTGCTGCGCGCTCAAGAGCA+AGG | 0.547968 | 3.4:-6438004 | MS.gene51984:CDS |
| CGTTCCGTATACAGATGGTC+AGG | 0.553919 | 3.4:-6438156 | MS.gene51984:CDS |
| TGCTGTGGATGCTGATAGTG+TGG | 0.563676 | 3.4:+6438257 | None:intergenic |
| TTAGGCATACACAACTGAGT+TGG | 0.564109 | 3.4:-6437872 | MS.gene51984:intron |
| TGCGAGAAAGCGGGGACCGG+AGG | 0.566566 | 3.4:-6438084 | MS.gene51984:CDS |
| GGCAAACCAATCAATTCGCA+TGG | 0.566719 | 3.4:-6438609 | MS.gene51984:CDS |
| CACAGAAATCTGCGAGAAAG+CGG | 0.574514 | 3.4:-6438094 | MS.gene51984:CDS |
| GTATACGGAACGCCGTCCGA+TGG | 0.577145 | 3.4:+6438167 | None:intergenic |
| CTGATGATACGCGACGAAGC+TGG | 0.577434 | 3.4:+6436800 | None:intergenic |
| TGAAAAGCTGAGGAAAGAGA+AGG | 0.578797 | 3.4:-6437818 | MS.gene51984:intron |
| GCAGCCGGTGCTCCATCGGA+CGG | 0.579352 | 3.4:-6438179 | MS.gene51984:CDS |
| GCATCCACAGCAAAGTGTGA+TGG | 0.583686 | 3.4:-6438246 | MS.gene51984:CDS |
| AGCTGGCATTTAGGTTCGGG+TGG | 0.592805 | 3.4:+6436817 | None:intergenic |
| GCAATGACTGAGCTATGATC+TGG | 0.599628 | 3.4:+6438207 | None:intergenic |
| TACTGTATCCACGGACCATG+TGG | 0.602459 | 3.4:+6438287 | None:intergenic |
| ACAACACTGACTTTAGGAGT+AGG | 0.608724 | 3.4:+6438341 | None:intergenic |
| ATCAATTCGCATGGAAAACG+AGG | 0.609101 | 3.4:-6438600 | MS.gene51984:CDS |
| GTGATTCTGAACTTCATCAA+GGG | 0.610620 | 3.4:+6438703 | None:intergenic |
| CATAGCTCAGTCATTGCACA+TGG | 0.615121 | 3.4:-6438201 | MS.gene51984:CDS |
| GACCGGAGGACATGATTGAG+AGG | 0.620098 | 3.4:-6438070 | MS.gene51984:CDS |
| GTCGCCATCACACTTTGCTG+TGG | 0.628005 | 3.4:+6438242 | None:intergenic |
| CCAACAAAACAGCGATCATG+AGG | 0.630197 | 3.4:-6438477 | MS.gene51984:CDS |
| AAGAGGAAAATGAAAAGCTG+AGG | 0.635284 | 3.4:-6437828 | MS.gene51984:CDS |
| GGTTGTGCATACTGTATCCA+CGG | 0.641304 | 3.4:+6438278 | None:intergenic |
| TGATTGAGAGGACTGTTGAG+AGG | 0.642725 | 3.4:-6438058 | MS.gene51984:CDS |
| GGTGGCGTTGGCTTCACCAG+TGG | 0.643645 | 3.4:-6438135 | MS.gene51984:CDS |
| CAGAAATCTGCGAGAAAGCG+GGG | 0.644702 | 3.4:-6438092 | MS.gene51984:CDS |
| GACGGCGTTCCGTATACAGA+TGG | 0.652010 | 3.4:-6438161 | MS.gene51984:CDS |
| TCCGTATACAGATGGTCAGG+TGG | 0.656234 | 3.4:-6438153 | MS.gene51984:CDS |
| CGGTCCGTTAAGCAAGAAGA+CGG | 0.656636 | 3.4:-6438522 | MS.gene51984:CDS |
| ACAAAACAGCGATCATGAGG+AGG | 0.668845 | 3.4:-6438474 | MS.gene51984:CDS |
| GGACCATGTGGAGAAAACTG+TGG | 0.769588 | 3.4:+6438299 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAATATCTAAACATT+TGG | - | chr3.4:6438446-6438465 | MS.gene51984:CDS | 15.0% |
| !! | ATTTACATTCTTAATTCTTA+TGG | - | chr3.4:6437916-6437935 | MS.gene51984:intron | 15.0% |
| !!! | ATTAACAAAAAGATTTTCAA+TGG | + | chr3.4:6437819-6437838 | None:intergenic | 15.0% |
| !!! | TTATTTTCTCAAATTATTAC+CGG | - | chr3.4:6438342-6438361 | MS.gene51984:CDS | 15.0% |
| !! | AAATTAGAACTTCAATAACA+TGG | + | chr3.4:6437636-6437655 | None:intergenic | 20.0% |
| !! | TACTTAATATCAAGAAACTA+AGG | + | chr3.4:6437857-6437876 | None:intergenic | 20.0% |
| !! | TATTCTGATATTTCATGTAT+TGG | - | chr3.4:6438145-6438164 | MS.gene51984:CDS | 20.0% |
| !! | TGAAATATCAGAATAATTCT+AGG | + | chr3.4:6438140-6438159 | None:intergenic | 20.0% |
| !! | TTGATTGTACTATATAAACA+AGG | + | chr3.4:6438489-6438508 | None:intergenic | 20.0% |
| !! | TTTGCTTAAAAGTTATAGTT+TGG | - | chr3.4:6437791-6437810 | MS.gene51984:intron | 20.0% |
| !!! | ACAAATTCAAATTTTTGGAA+TGG | - | chr3.4:6438635-6438654 | MS.gene51984:CDS | 20.0% |
| !!! | ATGCTACAAATTCAAATTTT+TGG | - | chr3.4:6438630-6438649 | MS.gene51984:CDS | 20.0% |
| !!! | GAAATTTGAAATCAGTAAAT+TGG | + | chr3.4:6438432-6438451 | None:intergenic | 20.0% |
| !!! | TACTTATTGACTGTTATTAT+TGG | - | chr3.4:6438205-6438224 | MS.gene51984:CDS | 20.0% |
| ! | AATACATATGAAGGATTGAA+AGG | + | chr3.4:6438243-6438262 | None:intergenic | 25.0% |
| ! | AATGAGTAAAAAGATCATGA+AGG | - | chr3.4:6438179-6438198 | MS.gene51984:CDS | 25.0% |
| ! | ATGGAAAAAGTTGTTTACTT+GGG | + | chr3.4:6437673-6437692 | None:intergenic | 25.0% |
| ! | CTAATTACAGTTATAATCCA+TGG | + | chr3.4:6437692-6437711 | None:intergenic | 25.0% |
| ! | GCAACAAGATTAATAAACAA+AGG | + | chr3.4:6438561-6438580 | None:intergenic | 25.0% |
| ! | TCTTAATTCTTATGGTGTTT+GGG | - | chr3.4:6437924-6437943 | MS.gene51984:intron | 25.0% |
| ! | TTCTTAATTCTTATGGTGTT+TGG | - | chr3.4:6437923-6437942 | MS.gene51984:intron | 25.0% |
| !! | ATCTCAATTTAGTTTCTGTA+CGG | - | chr3.4:6437879-6437898 | MS.gene51984:intron | 25.0% |
| !! | CATGGATTATAACTGTAATT+AGG | - | chr3.4:6437690-6437709 | MS.gene51984:intron | 25.0% |
| !! | TTACTGCTTAGAATTTTCTT+TGG | - | chr3.4:6437983-6438002 | MS.gene51984:intron | 25.0% |
| AGAAGAGGATGATTAAGAAT+CGG | - | chr3.4:6437549-6437568 | MS.gene51984:intron | 30.0% | |
| AGTGTCAGAAATACATATGA+AGG | + | chr3.4:6438252-6438271 | None:intergenic | 30.0% | |
| CATGGAAAAAGTTGTTTACT+TGG | + | chr3.4:6437674-6437693 | None:intergenic | 30.0% | |
| TGATATTGACACATAAACAC+CGG | + | chr3.4:6438364-6438383 | None:intergenic | 30.0% | |
| TTGGAATGGATGTATCTTTA+TGG | - | chr3.4:6438649-6438668 | MS.gene51984:CDS | 30.0% | |
| TTTCTGACACTTCAAATTCA+AGG | - | chr3.4:6438261-6438280 | MS.gene51984:CDS | 30.0% | |
| ! | CTGATATTTCATGTATTGGT+TGG | - | chr3.4:6438149-6438168 | MS.gene51984:CDS | 30.0% |
| ! | TTTTGCATTAAGCATTTGGA+TGG | - | chr3.4:6438602-6438621 | MS.gene51984:CDS | 30.0% |
| !! | CAAGTAAACAACTTTTTCCA+TGG | - | chr3.4:6437672-6437691 | MS.gene51984:intron | 30.0% |
| !!! | GATGACATTAGAGGATTTTT+TGG | - | chr3.4:6437163-6437182 | MS.gene51984:intron | 30.0% |
| !!! | TTGCATAGTGTTTTTTGAAG+AGG | - | chr3.4:6438577-6438596 | MS.gene51984:CDS | 30.0% |
| AAGAGGAAAATGAAAAGCTG+AGG | - | chr3.4:6437752-6437771 | MS.gene51984:intron | 35.0% | |
| AAGTAAGCACAAGACAGTAA+AGG | + | chr3.4:6438025-6438044 | None:intergenic | 35.0% | |
| ACGTTGAAAAACAACTTGTC+CGG | + | chr3.4:6437018-6437037 | None:intergenic | 35.0% | |
| AGTAAGCACAAGACAGTAAA+GGG | + | chr3.4:6438024-6438043 | None:intergenic | 35.0% | |
| AGTGATTCTGAACTTCATCA+AGG | + | chr3.4:6436881-6436900 | None:intergenic | 35.0% | |
| AGTTGTTTACTTGGGAGAAA+CGG | + | chr3.4:6437665-6437684 | None:intergenic | 35.0% | |
| GAAATTGTGCACTTTGATGT+TGG | - | chr3.4:6437946-6437965 | MS.gene51984:intron | 35.0% | |
| GAAGAGGATGATTAAGAATC+GGG | - | chr3.4:6437550-6437569 | MS.gene51984:intron | 35.0% | |
| GATGAAGTTCAGAATCACTT+AGG | - | chr3.4:6436882-6436901 | MS.gene51984:intron | 35.0% | |
| GTAAAGGGTCACATATTCTA+TGG | + | chr3.4:6438009-6438028 | None:intergenic | 35.0% | |
| GTGATTCTGAACTTCATCAA+GGG | + | chr3.4:6436880-6436899 | None:intergenic | 35.0% | |
| TCAAGGTTCATACTACTTAG+TGG | + | chr3.4:6436921-6436940 | None:intergenic | 35.0% | |
| TCAGATAAGTTTCTTACCAC+TGG | + | chr3.4:6437464-6437483 | None:intergenic | 35.0% | |
| TGTCAATATCATGTCAGTGT+CGG | + | chr3.4:6438299-6438318 | None:intergenic | 35.0% | |
| ! | ACGAGCTTCTGAAAAATGTA+TGG | - | chr3.4:6436940-6436959 | MS.gene51984:intron | 35.0% |
| ! | GAAAAATGTATGGACTGTTG+AGG | - | chr3.4:6436950-6436969 | MS.gene51984:intron | 35.0% |
| ! | GGCATTTTGCATTAAGCATT+TGG | - | chr3.4:6438598-6438617 | MS.gene51984:CDS | 35.0% |
| ! | GGTTGTACATTGAATTTTGC+CGG | + | chr3.4:6436854-6436873 | None:intergenic | 35.0% |
| ! | GTTGTACATTGAATTTTGCC+GGG | + | chr3.4:6436853-6436872 | None:intergenic | 35.0% |
| ! | GTTTTACATACTCAACTTGC+AGG | - | chr3.4:6438711-6438730 | MS.gene51984:CDS | 35.0% |
| !! | ACTGTCTTGTGCTTACTTTT+AGG | - | chr3.4:6438027-6438046 | MS.gene51984:CDS | 35.0% |
| !! | GATTCAACAACACTGACTTT+AGG | + | chr3.4:6437248-6437267 | None:intergenic | 35.0% |
| !!! | GAGGATTTTTTGGTTAAAGC+AGG | - | chr3.4:6437173-6437192 | MS.gene51984:intron | 35.0% |
| ATCAATTCGCATGGAAAACG+AGG | - | chr3.4:6436980-6436999 | MS.gene51984:intron | 40.0% | |
| CAACCTAATCTGTCGTTAAC+CGG | - | chr3.4:6437038-6437057 | MS.gene51984:intron | 40.0% | |
| CAAGAGATGCAGTCTACTTT+GGG | - | chr3.4:6437137-6437156 | MS.gene51984:intron | 40.0% | |
| CAGAATCACTTAGGTGACTT+AGG | - | chr3.4:6436891-6436910 | MS.gene51984:intron | 40.0% | |
| CTTCAAATTCAAGGCGTGTT+TGG | - | chr3.4:6438270-6438289 | MS.gene51984:CDS | 40.0% | |
| GTTGTTTACTTGGGAGAAAC+GGG | + | chr3.4:6437664-6437683 | None:intergenic | 40.0% | |
| TCAACCGTCTTCTTGCTTAA+CGG | + | chr3.4:6437065-6437084 | None:intergenic | 40.0% | |
| TCAAGAGATGCAGTCTACTT+TGG | - | chr3.4:6437136-6437155 | MS.gene51984:intron | 40.0% | |
| TCTGAACTTCATCAAGGGTA+AGG | + | chr3.4:6436875-6436894 | None:intergenic | 40.0% | |
| TGAAAAGCTGAGGAAAGAGA+AGG | - | chr3.4:6437762-6437781 | MS.gene51984:intron | 40.0% | |
| TGTCTCTGTCAACACTTCAT+AGG | - | chr3.4:6438390-6438409 | MS.gene51984:CDS | 40.0% | |
| TTAGGCATACACAACTGAGT+TGG | - | chr3.4:6437708-6437727 | MS.gene51984:intron | 40.0% | |
| TTTGGGTGAGATGACATTAG+AGG | - | chr3.4:6437154-6437173 | MS.gene51984:intron | 40.0% | |
| ! | CGTTTTCCATGCGAATTGAT+TGG | + | chr3.4:6436980-6436999 | None:intergenic | 40.0% |
| !! | ACAACACTGACTTTAGGAGT+AGG | + | chr3.4:6437242-6437261 | None:intergenic | 40.0% |
| !! | AGAAGACGGTTGATGAAGTT+TGG | - | chr3.4:6437072-6437091 | MS.gene51984:intron | 40.0% |
| !! | CATTTTTCAGAAGCTCGTCA+AGG | + | chr3.4:6436938-6436957 | None:intergenic | 40.0% |
| ACAAAACAGCGATCATGAGG+AGG | - | chr3.4:6437106-6437125 | MS.gene51984:intron | 45.0% | |
| ACAGAAATCTGCGAGAAAGC+GGG | - | chr3.4:6437487-6437506 | MS.gene51984:intron | 45.0% | |
| CACAGAAATCTGCGAGAAAG+CGG | - | chr3.4:6437486-6437505 | MS.gene51984:intron | 45.0% | |
| CATAGCTCAGTCATTGCACA+TGG | - | chr3.4:6437379-6437398 | MS.gene51984:intron | 45.0% | |
| CCAACAAAACAGCGATCATG+AGG | - | chr3.4:6437103-6437122 | MS.gene51984:intron | 45.0% | |
| GCAATGACTGAGCTATGATC+TGG | + | chr3.4:6437376-6437395 | None:intergenic | 45.0% | |
| GGCAAACCAATCAATTCGCA+TGG | - | chr3.4:6436971-6436990 | MS.gene51984:intron | 45.0% | |
| GGTTGTGCATACTGTATCCA+CGG | + | chr3.4:6437305-6437324 | None:intergenic | 45.0% | |
| TGATTGAGAGGACTGTTGAG+AGG | - | chr3.4:6437522-6437541 | MS.gene51984:intron | 45.0% | |
| ! | ACGAAGCTGGCATTTAGGTT+CGG | + | chr3.4:6438770-6438789 | None:intergenic | 45.0% |
| ! | GGTTAAAGCAGGCGTTGTTT+CGG | - | chr3.4:6437184-6437203 | MS.gene51984:intron | 45.0% |
| ! | TTGCCACAGTTTTCTCCACA+TGG | - | chr3.4:6437278-6437297 | MS.gene51984:intron | 45.0% |
| !! | CCTCATGATCGCTGTTTTGT+TGG | + | chr3.4:6437106-6437125 | None:intergenic | 45.0% |
| !! | TGAAGTGTTGACAGAGACAC+AGG | + | chr3.4:6438389-6438408 | None:intergenic | 45.0% |
| CAGAAATCTGCGAGAAAGCG+GGG | - | chr3.4:6437488-6437507 | MS.gene51984:intron | 50.0% | |
| CGGTCCGTTAAGCAAGAAGA+CGG | - | chr3.4:6437058-6437077 | MS.gene51984:intron | 50.0% | |
| CGTTCCGTATACAGATGGTC+AGG | - | chr3.4:6437424-6437443 | MS.gene51984:intron | 50.0% | |
| CTGTTGAGAGGAAGCAGAAG+AGG | - | chr3.4:6437534-6437553 | MS.gene51984:intron | 50.0% | |
| GACTGAGCTATGATCTGGCT+CGG | + | chr3.4:6437371-6437390 | None:intergenic | 50.0% | |
| GCATCCACAGCAAAGTGTGA+TGG | - | chr3.4:6437334-6437353 | MS.gene51984:intron | 50.0% | |
| GCCACCTGACCATCTGTATA+CGG | + | chr3.4:6437431-6437450 | None:intergenic | 50.0% | |
| GGACCATGTGGAGAAAACTG+TGG | + | chr3.4:6437284-6437303 | None:intergenic | 50.0% | |
| GGACCGGTTAACGACAGATT+AGG | + | chr3.4:6437044-6437063 | None:intergenic | 50.0% | |
| GTCCTCTCAATCATGTCCTC+CGG | + | chr3.4:6437515-6437534 | None:intergenic | 50.0% | |
| TACTGTATCCACGGACCATG+TGG | + | chr3.4:6437296-6437315 | None:intergenic | 50.0% | |
| TCCGTATACAGATGGTCAGG+TGG | - | chr3.4:6437427-6437446 | MS.gene51984:intron | 50.0% | |
| ! | AGTTTTCTCCACATGGTCCG+TGG | - | chr3.4:6437285-6437304 | MS.gene51984:intron | 50.0% |
| ! | ATTGAATTTTGCCGGGCCAG+AGG | + | chr3.4:6436846-6436865 | None:intergenic | 50.0% |
| ! | CGAAGCTGGCATTTAGGTTC+GGG | + | chr3.4:6438769-6438788 | None:intergenic | 50.0% |
| ! | CGTCTTCTTGCTTAACGGAC+CGG | + | chr3.4:6437060-6437079 | None:intergenic | 50.0% |
| ! | TGCTGTGGATGCTGATAGTG+TGG | + | chr3.4:6437326-6437345 | None:intergenic | 50.0% |
| ACGCGACGAAGCTGGCATTT+AGG | + | chr3.4:6438775-6438794 | None:intergenic | 55.0% | |
| CAAAGTCTCGCGTCTGGAAG+AGG | - | chr3.4:6437735-6437754 | MS.gene51984:intron | 55.0% | |
| CAGTCATTGCACATGGCAGC+CGG | - | chr3.4:6437386-6437405 | MS.gene51984:intron | 55.0% | |
| CTGATGATACGCGACGAAGC+TGG | + | chr3.4:6438783-6438802 | None:intergenic | 55.0% | |
| GACCGGAGGACATGATTGAG+AGG | - | chr3.4:6437510-6437529 | MS.gene51984:intron | 55.0% | |
| GACGGCGTTCCGTATACAGA+TGG | - | chr3.4:6437419-6437438 | MS.gene51984:intron | 55.0% | |
| GCGCTCAAGAGCAAGGAAAC+AGG | - | chr3.4:6437583-6437602 | MS.gene51984:intron | 55.0% | |
| GGAGATCAAAGTCTCGCGTC+TGG | - | chr3.4:6437729-6437748 | MS.gene51984:intron | 55.0% | |
| GTCGCCATCACACTTTGCTG+TGG | + | chr3.4:6437341-6437360 | None:intergenic | 55.0% | |
| TACAGATGGTCAGGTGGCGT+TGG | - | chr3.4:6437433-6437452 | MS.gene51984:intron | 55.0% | |
| ! | AGCTGGCATTTAGGTTCGGG+TGG | + | chr3.4:6438766-6438785 | None:intergenic | 55.0% |
| ! | TGGCATTTAGGTTCGGGTGG+TGG | + | chr3.4:6438763-6438782 | None:intergenic | 55.0% |
| AACGAGGACACAGCGCAAGC+CGG | - | chr3.4:6436996-6437015 | MS.gene51984:intron | 60.0% | |
| ATCTGCGAGAAAGCGGGGAC+CGG | - | chr3.4:6437493-6437512 | MS.gene51984:intron | 60.0% | |
| CCAACCGCAATTCCAGCCTC+TGG | - | chr3.4:6436827-6436846 | MS.gene51984:CDS | 60.0% | |
| CCAGAGGCTGGAATTGCGGT+TGG | + | chr3.4:6436830-6436849 | None:intergenic | 60.0% | |
| GTATACGGAACGCCGTCCGA+TGG | + | chr3.4:6437416-6437435 | None:intergenic | 60.0% | |
| ! | AATTTTGCCGGGCCAGAGGC+TGG | + | chr3.4:6436842-6436861 | None:intergenic | 60.0% |
| AACGCCGTCCGATGGAGCAC+CGG | + | chr3.4:6437408-6437427 | None:intergenic | 65.0% | |
| CATGGCAGCCGGTGCTCCAT+CGG | - | chr3.4:6437397-6437416 | MS.gene51984:intron | 65.0% | |
| CGCAATTCCAGCCTCTGGCC+CGG | - | chr3.4:6436832-6436851 | MS.gene51984:CDS | 65.0% | |
| CGGGCCAGAGGCTGGAATTG+CGG | + | chr3.4:6436834-6436853 | None:intergenic | 65.0% | |
| CTGCTGCGCGCTCAAGAGCA+AGG | - | chr3.4:6437576-6437595 | MS.gene51984:intron | 65.0% | |
| !! | GGTGGCGTTGGCTTCACCAG+TGG | - | chr3.4:6437445-6437464 | MS.gene51984:intron | 65.0% |
| GCAGCCGGTGCTCCATCGGA+CGG | - | chr3.4:6437401-6437420 | MS.gene51984:intron | 70.0% | |
| TGCGAGAAAGCGGGGACCGG+AGG | - | chr3.4:6437496-6437515 | MS.gene51984:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 6436789 | 6438813 | 6436789 | ID=MS.gene51984 |
| chr3.4 | mRNA | 6436789 | 6438813 | 6436789 | ID=MS.gene51984.t1;Parent=MS.gene51984 |
| chr3.4 | exon | 6437998 | 6438813 | 6437998 | ID=MS.gene51984.t1.exon1;Parent=MS.gene51984.t1 |
| chr3.4 | CDS | 6437998 | 6438813 | 6437998 | ID=cds.MS.gene51984.t1;Parent=MS.gene51984.t1 |
| chr3.4 | exon | 6437819 | 6437890 | 6437819 | ID=MS.gene51984.t1.exon2;Parent=MS.gene51984.t1 |
| chr3.4 | CDS | 6437819 | 6437890 | 6437819 | ID=cds.MS.gene51984.t1;Parent=MS.gene51984.t1 |
| chr3.4 | exon | 6436789 | 6436869 | 6436789 | ID=MS.gene51984.t1.exon3;Parent=MS.gene51984.t1 |
| chr3.4 | CDS | 6436789 | 6436869 | 6436789 | ID=cds.MS.gene51984.t1;Parent=MS.gene51984.t1 |
| Gene Sequence |
| Protein sequence |
