Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51989.t1 | AES68615.2 | 75.9 | 526 | 59 | 10 | 81 | 561 | 1 | 503 | 5.40E-217 | 763.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51989.t1 | Q9SLH0 | 50.5 | 309 | 130 | 6 | 20 | 310 | 31 | 334 | 8.0e-84 | 312.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51989.t1 | G7IVH7 | 75.9 | 526 | 59 | 10 | 81 | 561 | 1 | 503 | 3.9e-217 | 763.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene51989.t1 | TF | EIL |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51989.t1 | MTR_3g010790 | 78.327 | 526 | 46 | 10 | 81 | 561 | 1 | 503 | 0.0 | 811 |
MS.gene51989.t1 | MTR_6g060600 | 46.914 | 648 | 233 | 16 | 9 | 553 | 18 | 657 | 5.24e-166 | 487 |
MS.gene51989.t1 | MTR_6g460640 | 46.349 | 671 | 232 | 18 | 1 | 553 | 1 | 661 | 1.07e-163 | 481 |
MS.gene51989.t1 | MTR_3g078770 | 51.736 | 288 | 128 | 5 | 32 | 313 | 51 | 333 | 1.11e-98 | 312 |
MS.gene51989.t1 | MTR_5g087790 | 50.000 | 298 | 121 | 5 | 29 | 310 | 45 | 330 | 7.80e-98 | 310 |
MS.gene51989.t1 | MTR_2g098470 | 51.601 | 281 | 119 | 5 | 11 | 282 | 18 | 290 | 1.70e-93 | 298 |
MS.gene51989.t1 | MTR_3g087530 | 47.600 | 250 | 127 | 2 | 33 | 279 | 32 | 280 | 2.23e-81 | 261 |
MS.gene51989.t1 | MTR_8g091370 | 49.421 | 259 | 122 | 5 | 26 | 279 | 17 | 271 | 1.34e-75 | 247 |
MS.gene51989.t1 | MTR_1g024420 | 64.078 | 103 | 29 | 1 | 29 | 123 | 6 | 108 | 6.77e-36 | 130 |
MS.gene51989.t1 | MTR_3g010785 | 92.500 | 80 | 5 | 1 | 1 | 79 | 1 | 80 | 6.99e-25 | 98.6 |
MS.gene51989.t1 | MTR_6g060630 | 60.227 | 88 | 19 | 3 | 437 | 509 | 120 | 206 | 4.40e-21 | 92.0 |
MS.gene51989.t1 | MTR_7g095580 | 36.634 | 101 | 59 | 1 | 70 | 165 | 1 | 101 | 1.15e-14 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51989.t1 | AT2G27050 | 53.532 | 269 | 110 | 4 | 29 | 287 | 45 | 308 | 1.26e-99 | 313 |
MS.gene51989.t1 | AT3G20770 | 49.840 | 313 | 145 | 5 | 5 | 310 | 23 | 330 | 1.60e-97 | 310 |
MS.gene51989.t1 | AT1G73730 | 48.418 | 316 | 134 | 7 | 16 | 313 | 11 | 315 | 1.41e-93 | 297 |
MS.gene51989.t1 | AT1G73730 | 48.418 | 316 | 134 | 7 | 16 | 313 | 23 | 327 | 2.18e-93 | 297 |
MS.gene51989.t1 | AT5G10120 | 45.076 | 264 | 131 | 5 | 26 | 279 | 16 | 275 | 4.16e-76 | 249 |
MS.gene51989.t1 | AT5G21120 | 43.493 | 292 | 143 | 5 | 38 | 310 | 53 | 341 | 7.75e-76 | 249 |
MS.gene51989.t1 | AT5G21120 | 43.493 | 292 | 143 | 5 | 38 | 310 | 53 | 341 | 7.75e-76 | 249 |
MS.gene51989.t1 | AT5G21120 | 43.493 | 292 | 143 | 5 | 38 | 310 | 60 | 348 | 7.87e-76 | 249 |
MS.gene51989.t1 | AT5G65100 | 41.935 | 279 | 137 | 4 | 25 | 281 | 32 | 307 | 1.78e-72 | 242 |
Find 117 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCACATTGTTCTTCATATT+TGG | 0.128045 | 3.3:-6039052 | None:intergenic |
TTCTCTTGGCCAAACAATAT+TGG | 0.211643 | 3.3:+6040619 | MS.gene51989:CDS |
AAGGAGAAGATGTTTCTATT+TGG | 0.240323 | 3.3:+6040221 | MS.gene51989:CDS |
AGATTTGAGGCTGAAAATTT+TGG | 0.272574 | 3.3:-6040297 | None:intergenic |
GAAGAATTTAAGAATGATTC+AGG | 0.273405 | 3.3:-6039513 | None:intergenic |
ATGCTAAGGATACAGCTATT+TGG | 0.278436 | 3.3:+6039445 | MS.gene51989:CDS |
CTCCTGATCTTCTGAAAATT+AGG | 0.282984 | 3.3:-6039384 | None:intergenic |
TGTTGCTGCTTCCTCCTATT+TGG | 0.284096 | 3.3:-6039761 | None:intergenic |
CCATTTGAGGCTGCATGTTT+TGG | 0.285639 | 3.3:-6040381 | None:intergenic |
TCTCTTGGCCAAACAATATT+GGG | 0.290198 | 3.3:+6040620 | MS.gene51989:CDS |
CACATGATTTGAAGAAGGTT+TGG | 0.299071 | 3.3:+6039322 | MS.gene51989:CDS |
TAACTTTGTGTTGCCACATT+AGG | 0.315473 | 3.3:-6040592 | None:intergenic |
CAACTCCAACCATTTGGAAT+TGG | 0.333568 | 3.3:-6039788 | None:intergenic |
TTCATCTTTAGATGAGTTGA+TGG | 0.334799 | 3.3:+6040522 | MS.gene51989:CDS |
TATTAATTCCCAATATTGTT+TGG | 0.336531 | 3.3:-6040628 | None:intergenic |
GATGTTCGTGGCTTCGTCTA+TGG | 0.352458 | 3.3:+6038925 | MS.gene51989:CDS |
AGCTTCCAACTCCAACCATT+TGG | 0.359268 | 3.3:-6039794 | None:intergenic |
CAAACCAATGATTGGCTCTT+CGG | 0.371062 | 3.3:+6038966 | MS.gene51989:CDS |
ATTGAACCTAATATTGTATC+AGG | 0.373081 | 3.3:-6039141 | None:intergenic |
CGAATCATGGTGGAAGGAAA+TGG | 0.374307 | 3.3:+6039254 | MS.gene51989:CDS |
CCTCCACCATGGTGGCCAAC+AGG | 0.377036 | 3.3:+6039228 | MS.gene51989:CDS |
GACCTACCTGATACAATATT+AGG | 0.387617 | 3.3:+6039135 | MS.gene51989:CDS |
TCATATTTGGCGATTGCAGC+TGG | 0.389765 | 3.3:-6039039 | None:intergenic |
AAGAGAAAGGCTGACCAAAT+AGG | 0.390964 | 3.3:+6039747 | MS.gene51989:CDS |
TTCTTAAATTCTTCTTGTGT+TGG | 0.395347 | 3.3:+6039522 | MS.gene51989:CDS |
CACAAAGTTATGATTTCTCT+TGG | 0.396627 | 3.3:+6040605 | MS.gene51989:CDS |
GTTGGAATCATGTTGGTAAC+TGG | 0.406571 | 3.3:-6040346 | None:intergenic |
TAGAAATTCTGCTCCATTTG+AGG | 0.408160 | 3.3:-6040394 | None:intergenic |
GTGCACAAGAGGGCATATTA+AGG | 0.410074 | 3.3:+6037817 | MS.gene51989:CDS |
ATCATTGAAGTGTAGATTTG+AGG | 0.410822 | 3.3:-6040310 | None:intergenic |
CCAAAACATGCAGCCTCAAA+TGG | 0.411657 | 3.3:+6040381 | MS.gene51989:CDS |
CCCTCATCACATGATGATAA+AGG | 0.413199 | 3.3:-6039615 | None:intergenic |
TATTAGTTATGAAGAAAGAT+TGG | 0.415453 | 3.3:+6039476 | MS.gene51989:CDS |
ACCCCAAAGAAAACATCCTT+TGG | 0.424688 | 3.3:+6039194 | MS.gene51989:CDS |
AACATGATTCCTACTCCTTC+TGG | 0.428508 | 3.3:+6040268 | MS.gene51989:CDS |
CGGAAAATCTACGCGGTTGG+TGG | 0.429144 | 3.3:+6038986 | MS.gene51989:CDS |
CAATCTTGTTATTGAGAGTA+GGG | 0.434145 | 3.3:+6039716 | MS.gene51989:CDS |
GGAGTATTGTTAGACATTCC+AGG | 0.438919 | 3.3:+6039403 | MS.gene51989:CDS |
AGGAACTAGAGACAAAGATA+TGG | 0.443648 | 3.3:+6037700 | MS.gene51989:CDS |
GACAATGGCTCGTGCACAAG+AGG | 0.447975 | 3.3:+6037806 | MS.gene51989:CDS |
TGAAAGTAGTTATGAGTTTG+TGG | 0.453514 | 3.3:+6039545 | MS.gene51989:CDS |
GAAGGAAATGGGATTTAGTA+AGG | 0.462346 | 3.3:+6039266 | MS.gene51989:CDS |
CACCATGATTCGTTCCCTGT+TGG | 0.467429 | 3.3:-6039243 | None:intergenic |
GACAATGGCAAACCAATGAT+TGG | 0.467907 | 3.3:+6038958 | MS.gene51989:CDS |
AAAACCACATGATTTGAAGA+AGG | 0.473630 | 3.3:+6039317 | MS.gene51989:CDS |
TGTTGCTTGATGAGCAAGTA+AGG | 0.474666 | 3.3:+6039097 | MS.gene51989:CDS |
CAATTCCAAATGGTTGGAGT+TGG | 0.477252 | 3.3:+6039789 | MS.gene51989:CDS |
GAAGCACCGTTATCAACGTT+GGG | 0.485553 | 3.3:-6037609 | None:intergenic |
GGCCAACAGGGAACGAATCA+TGG | 0.488109 | 3.3:+6039241 | MS.gene51989:CDS |
ACCAACATGATTCCAACTCC+TGG | 0.488765 | 3.3:+6040352 | MS.gene51989:CDS |
GCAAAATAAATTCAATGCTA+AGG | 0.497897 | 3.3:+6039431 | MS.gene51989:CDS |
CCTGTTGGCCACCATGGTGG+AGG | 0.500513 | 3.3:-6039228 | None:intergenic |
AAAGTAAACTTTGAGGAAAA+CGG | 0.500540 | 3.3:+6039015 | MS.gene51989:CDS |
AACCTCCATGATCATTGTCT+TGG | 0.503715 | 3.3:-6039683 | None:intergenic |
ACATTAACGACTTCAGCATT+AGG | 0.506244 | 3.3:-6040460 | None:intergenic |
GGTAGGTCATACAAGGAGTA+AGG | 0.514149 | 3.3:-6039120 | None:intergenic |
GAATCATGGTGGAAGGAAAT+GGG | 0.515364 | 3.3:+6039255 | MS.gene51989:CDS |
AACAATGCAAAACAAGATAA+CGG | 0.516750 | 3.3:+6037633 | MS.gene51989:CDS |
TTGGAAAATTTGTGTGTTGA+CGG | 0.518161 | 3.3:+6039341 | MS.gene51989:CDS |
AACAACCAATTCCAAATGGT+TGG | 0.519990 | 3.3:+6039783 | MS.gene51989:CDS |
AAATCTACGCGGTTGGTGGA+AGG | 0.522592 | 3.3:+6038990 | MS.gene51989:CDS |
AAGTGACAATAAAACATCAC+TGG | 0.527333 | 3.3:+6037767 | MS.gene51989:CDS |
CAAACCTTCTTCAAATCATG+TGG | 0.527454 | 3.3:-6039321 | None:intergenic |
CAACAACAACCAATTCCAAA+TGG | 0.529692 | 3.3:+6039779 | MS.gene51989:CDS |
CATTACCAAGACAATGATCA+TGG | 0.535851 | 3.3:+6039678 | MS.gene51989:CDS |
GGATCAGTTTCAACAGTGAA+TGG | 0.537851 | 3.3:+6039072 | MS.gene51989:CDS |
ACCTTTATCATCATGTGATG+AGG | 0.538023 | 3.3:+6039614 | MS.gene51989:CDS |
ACAATCTTGTTATTGAGAGT+AGG | 0.541787 | 3.3:+6039715 | MS.gene51989:CDS |
CCTTTATCATCATGTGATGA+GGG | 0.544805 | 3.3:+6039615 | MS.gene51989:CDS |
ATGAATCATGTTGTGCCAGC+TGG | 0.545213 | 3.3:+6040244 | MS.gene51989:CDS |
GTAGGAATCATGTTGCCAGC+TGG | 0.547013 | 3.3:-6040259 | None:intergenic |
ATGCATCCCAACGTTGATAA+CGG | 0.547251 | 3.3:+6037603 | MS.gene51989:CDS |
CAGAATTTCTATGATCAACA+AGG | 0.550654 | 3.3:+6040406 | MS.gene51989:CDS |
TAGGGGTGCTAATAAGAGAA+AGG | 0.554483 | 3.3:+6039734 | MS.gene51989:CDS |
TGAAGCACCGTTATCAACGT+TGG | 0.555762 | 3.3:-6037610 | None:intergenic |
CTCATCTAAAGATGAATCGA+AGG | 0.557404 | 3.3:-6040515 | None:intergenic |
TGATCATTGTCTTGGTAATG+TGG | 0.562092 | 3.3:-6039675 | None:intergenic |
CTTCGGAAAATCTACGCGGT+TGG | 0.564527 | 3.3:+6038983 | MS.gene51989:CDS |
AATCAGATCACTATTCATGC+AGG | 0.564840 | 3.3:+6039882 | MS.gene51989:CDS |
AAACATAGATATGACTATTG+AGG | 0.565786 | 3.3:+6037680 | MS.gene51989:CDS |
ACTTATTGATTCTCCTAATG+TGG | 0.567478 | 3.3:+6040579 | MS.gene51989:CDS |
TCGTTCCCTGTTGGCCACCA+TGG | 0.567749 | 3.3:-6039234 | None:intergenic |
CAGGTACATGTTAAAGATGG+TGG | 0.568652 | 3.3:+6038894 | MS.gene51989:intron |
GAAGGACAAAGTAAACTTTG+AGG | 0.573836 | 3.3:+6039008 | MS.gene51989:CDS |
GGAGGAATGCCGCTTTCCAA+AGG | 0.574058 | 3.3:-6039210 | None:intergenic |
CTCCACCATGGTGGCCAACA+GGG | 0.575877 | 3.3:+6039229 | MS.gene51989:CDS |
TTCCCTGTTGGCCACCATGG+TGG | 0.581079 | 3.3:-6039231 | None:intergenic |
TGGTAATCACCAGAAGGAGT+AGG | 0.582343 | 3.3:-6040277 | None:intergenic |
TACCATGCAGGTAATGACTC+AGG | 0.590669 | 3.3:+6040196 | MS.gene51989:intron |
GTGATCTGATTTGCAACAGA+AGG | 0.591015 | 3.3:-6039870 | None:intergenic |
TGTATCAGGTAGGTCATACA+AGG | 0.591621 | 3.3:-6039127 | None:intergenic |
AGAAAACATCCTTTGGAAAG+CGG | 0.596755 | 3.3:+6039201 | MS.gene51989:CDS |
GCTTGCTCATGTTGGTCAAG+AGG | 0.599308 | 3.3:-6039840 | None:intergenic |
TCCAGGAGTTGGAATCATGT+TGG | 0.604429 | 3.3:-6040353 | None:intergenic |
ACAATTGAAAAGAAAGACAA+TGG | 0.608503 | 3.3:+6037791 | MS.gene51989:CDS |
AGGGAACGAATCATGGTGGA+AGG | 0.608968 | 3.3:+6039248 | MS.gene51989:CDS |
GCAGGTAATGACTCAGGAGA+AGG | 0.617966 | 3.3:+6040202 | MS.gene51989:intron |
GTACTGCAGCTTGCTCATGT+TGG | 0.618229 | 3.3:-6039848 | None:intergenic |
AGAAAGGCTGACCAAATAGG+AGG | 0.621759 | 3.3:+6039750 | MS.gene51989:CDS |
AGAATTTCTATGATCAACAA+GGG | 0.625036 | 3.3:+6040407 | MS.gene51989:CDS |
GCATATCGAAGTCTCCATGT+TGG | 0.635104 | 3.3:-6039646 | None:intergenic |
AATCTTGTTATTGAGAGTAG+GGG | 0.639924 | 3.3:+6039717 | MS.gene51989:CDS |
TGCAAAACAAGATAACGGAA+AGG | 0.654316 | 3.3:+6037638 | MS.gene51989:CDS |
ACAATGGCTCGTGCACAAGA+GGG | 0.658700 | 3.3:+6037807 | MS.gene51989:CDS |
GCCAAATATGAAGAACAATG+TGG | 0.678186 | 3.3:+6039051 | MS.gene51989:CDS |
AGCTCAAAGAATCAACAACA+TGG | 0.679952 | 3.3:+6039813 | MS.gene51989:CDS |
GCGGCATTCCTCCACCATGG+TGG | 0.682914 | 3.3:+6039220 | MS.gene51989:CDS |
GGACAGGTACATGTTAAAGA+TGG | 0.686569 | 3.3:+6038891 | MS.gene51989:intron |
AACCTAATATTGTATCAGGT+AGG | 0.686602 | 3.3:-6039137 | None:intergenic |
TATGGAGTAGTACTTGACAA+TGG | 0.689392 | 3.3:+6038943 | MS.gene51989:CDS |
GAATTTCTATGATCAACAAG+GGG | 0.696998 | 3.3:+6040408 | MS.gene51989:CDS |
GGAAACAGATGATTATGATG+TGG | 0.698666 | 3.3:+6039566 | MS.gene51989:CDS |
AAAGCGGCATTCCTCCACCA+TGG | 0.708484 | 3.3:+6039217 | MS.gene51989:CDS |
TGAGGGTTCTGATACCAACA+TGG | 0.719170 | 3.3:+6039632 | MS.gene51989:CDS |
GGCTCTTCGGAAAATCTACG+CGG | 0.742332 | 3.3:+6038979 | MS.gene51989:CDS |
CAACAGGGAACGAATCATGG+TGG | 0.754137 | 3.3:+6039244 | MS.gene51989:CDS |
TACCAAGACAATGATCATGG+AGG | 0.766248 | 3.3:+6039681 | MS.gene51989:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATTATATATTAAATTTAA+AGG | - | chr3.3:6038371-6038390 | None:intergenic | 0.0% |
!! | AAAAATTAGCATAAATTAAA+AGG | + | chr3.3:6038096-6038115 | MS.gene51989:intron | 10.0% |
!! | GTAACTAAAAATATATTATT+GGG | - | chr3.3:6038056-6038075 | None:intergenic | 10.0% |
!! | TAACTAAAAATATATTATTG+GGG | - | chr3.3:6038055-6038074 | None:intergenic | 10.0% |
!! | TGTTTAATCTTTATAAAATT+AGG | - | chr3.3:6038341-6038360 | None:intergenic | 10.0% |
!! | TTTACTTCATATTAAAATTA+TGG | - | chr3.3:6038738-6038757 | None:intergenic | 10.0% |
!!! | TCAATAGAAATAAAAATTTT+GGG | - | chr3.3:6038003-6038022 | None:intergenic | 10.0% |
!!! | TTCAATAGAAATAAAAATTT+TGG | - | chr3.3:6038004-6038023 | None:intergenic | 10.0% |
!! | CCTAAAAAAATATTTGTATT+TGG | + | chr3.3:6038415-6038434 | MS.gene51989:intron | 15.0% |
!! | GGTAACTAAAAATATATTAT+TGG | - | chr3.3:6038057-6038076 | None:intergenic | 15.0% |
!!! | CAATAGAAATAAAAATTTTG+GGG | - | chr3.3:6038002-6038021 | None:intergenic | 15.0% |
!!! | CCAAATACAAATATTTTTTT+AGG | - | chr3.3:6038418-6038437 | None:intergenic | 15.0% |
!!! | TACTTAAAAACTAGTTTTTA+GGG | + | chr3.3:6040015-6040034 | MS.gene51989:intron | 15.0% |
!!! | TTACTTAAAAACTAGTTTTT+AGG | + | chr3.3:6040014-6040033 | MS.gene51989:intron | 15.0% |
!! | AACCATTAGGTATATTAATA+TGG | + | chr3.3:6038022-6038041 | MS.gene51989:intron | 20.0% |
!! | TATTAGTTATGAAGAAAGAT+TGG | + | chr3.3:6039476-6039495 | MS.gene51989:CDS | 20.0% |
!!! | ATATTTTAGTTAGTGAACTA+GGG | + | chr3.3:6038561-6038580 | MS.gene51989:intron | 20.0% |
!!! | CCTGAAAATATTCTTTAAAA+CGG | - | chr3.3:6037942-6037961 | None:intergenic | 20.0% |
!!! | CGTTTTAAAGAATATTTTCA+GGG | + | chr3.3:6037940-6037959 | MS.gene51989:intron | 20.0% |
!!! | GTTTTAAAGAATATTTTCAG+GGG | + | chr3.3:6037941-6037960 | MS.gene51989:intron | 20.0% |
!!! | TATTTTAATTCTATCTCTTG+AGG | + | chr3.3:6038474-6038493 | MS.gene51989:intron | 20.0% |
!!! | TTTATTTCTATTGAACCATT+AGG | + | chr3.3:6038009-6038028 | MS.gene51989:intron | 20.0% |
!!! | TTTGCAAATAAATTTGTTTG+AGG | - | chr3.3:6038078-6038097 | None:intergenic | 20.0% |
! | AAACATAGATATGACTATTG+AGG | + | chr3.3:6037680-6037699 | MS.gene51989:CDS | 25.0% |
! | AACAATGCAAAACAAGATAA+CGG | + | chr3.3:6037633-6037652 | MS.gene51989:CDS | 25.0% |
! | AAGTCAAAGTTCTCAAAATT+GGG | - | chr3.3:6038825-6038844 | None:intergenic | 25.0% |
! | ACAATTGAAAAGAAAGACAA+TGG | + | chr3.3:6037791-6037810 | MS.gene51989:CDS | 25.0% |
! | AGAATTTCTATGATCAACAA+GGG | + | chr3.3:6040407-6040426 | MS.gene51989:CDS | 25.0% |
! | AGCCATATTAATATACCTAA+TGG | - | chr3.3:6038027-6038046 | None:intergenic | 25.0% |
! | ATTGAACCTAATATTGTATC+AGG | - | chr3.3:6039144-6039163 | None:intergenic | 25.0% |
! | GAAGAATTTAAGAATGATTC+AGG | - | chr3.3:6039516-6039535 | None:intergenic | 25.0% |
! | GATAGAATTAAAATATCCAG+CGG | - | chr3.3:6038469-6038488 | None:intergenic | 25.0% |
! | GCAAAATAAATTCAATGCTA+AGG | + | chr3.3:6039431-6039450 | MS.gene51989:CDS | 25.0% |
! | TCAATAGTCAAACATAATAG+AGG | + | chr3.3:6038218-6038237 | MS.gene51989:intron | 25.0% |
! | TTCTTAAATTCTTCTTGTGT+TGG | + | chr3.3:6039522-6039541 | MS.gene51989:CDS | 25.0% |
!! | AAAGTAAACTTTGAGGAAAA+CGG | + | chr3.3:6039015-6039034 | MS.gene51989:CDS | 25.0% |
!! | AAGCTAGAGAAATTTTTACA+AGG | - | chr3.3:6038444-6038463 | None:intergenic | 25.0% |
!! | AGCTAGAGAAATTTTTACAA+GGG | - | chr3.3:6038443-6038462 | None:intergenic | 25.0% |
!!! | AAATCATGTGGTTTTTTGTA+TGG | - | chr3.3:6039312-6039331 | None:intergenic | 25.0% |
!!! | CATATTTTAGTTAGTGAACT+AGG | + | chr3.3:6038560-6038579 | MS.gene51989:intron | 25.0% |
!!! | CCGTTTTAAAGAATATTTTC+AGG | + | chr3.3:6037939-6037958 | MS.gene51989:intron | 25.0% |
!!! | GGATCATTTTCAAGTTTAAT+TGG | + | chr3.3:6038528-6038547 | MS.gene51989:intron | 25.0% |
AAAACCACATGATTTGAAGA+AGG | + | chr3.3:6039317-6039336 | MS.gene51989:CDS | 30.0% | |
AACCTAATATTGTATCAGGT+AGG | - | chr3.3:6039140-6039159 | None:intergenic | 30.0% | |
AAGTGACAATAAAACATCAC+TGG | + | chr3.3:6037767-6037786 | MS.gene51989:CDS | 30.0% | |
ATCATTGAAGTGTAGATTTG+AGG | - | chr3.3:6040313-6040332 | None:intergenic | 30.0% | |
ATGCATGACAAATGTAGATA+GGG | - | chr3.3:6039974-6039993 | None:intergenic | 30.0% | |
CAAGTCAAAGTTCTCAAAAT+TGG | - | chr3.3:6038826-6038845 | None:intergenic | 30.0% | |
CACAAAGTTATGATTTCTCT+TGG | + | chr3.3:6040605-6040624 | MS.gene51989:CDS | 30.0% | |
CAGAATTTCTATGATCAACA+AGG | + | chr3.3:6040406-6040425 | MS.gene51989:CDS | 30.0% | |
GAATTTCTATGATCAACAAG+GGG | + | chr3.3:6040408-6040427 | MS.gene51989:CDS | 30.0% | |
TCCACATTGTTCTTCATATT+TGG | - | chr3.3:6039055-6039074 | None:intergenic | 30.0% | |
TGAAAGTAGTTATGAGTTTG+TGG | + | chr3.3:6039545-6039564 | MS.gene51989:CDS | 30.0% | |
TTAAACTTGAAAATGATCCC+TGG | - | chr3.3:6038527-6038546 | None:intergenic | 30.0% | |
TTGGAAAATTTGTGTGTTGA+CGG | + | chr3.3:6039341-6039360 | MS.gene51989:CDS | 30.0% | |
! | AAGGAGAAGATGTTTCTATT+TGG | + | chr3.3:6040221-6040240 | MS.gene51989:CDS | 30.0% |
! | GCTAGAGAAATTTTTACAAG+GGG | - | chr3.3:6038442-6038461 | None:intergenic | 30.0% |
! | TTCATCTTTAGATGAGTTGA+TGG | + | chr3.3:6040522-6040541 | MS.gene51989:CDS | 30.0% |
! | TTCCAAAGGATGTTTTCTTT+GGG | - | chr3.3:6039199-6039218 | None:intergenic | 30.0% |
! | TTTCCAAAGGATGTTTTCTT+TGG | - | chr3.3:6039200-6039219 | None:intergenic | 30.0% |
! | TTTTTCCTACATAAGTAGCT+CGG | - | chr3.3:6040093-6040112 | None:intergenic | 30.0% |
!! | AAATTTTGGTAATCACCAGA+AGG | - | chr3.3:6040286-6040305 | None:intergenic | 30.0% |
!! | AATCTTGTTATTGAGAGTAG+GGG | + | chr3.3:6039717-6039736 | MS.gene51989:CDS | 30.0% |
!! | ACAATCTTGTTATTGAGAGT+AGG | + | chr3.3:6039715-6039734 | MS.gene51989:CDS | 30.0% |
!! | ACTTATTGATTCTCCTAATG+TGG | + | chr3.3:6040579-6040598 | MS.gene51989:CDS | 30.0% |
!! | AGATTTGAGGCTGAAAATTT+TGG | - | chr3.3:6040300-6040319 | None:intergenic | 30.0% |
!! | CAATCTTGTTATTGAGAGTA+GGG | + | chr3.3:6039716-6039735 | MS.gene51989:CDS | 30.0% |
AAAATCGCAAGTTAAAGTCC+AGG | + | chr3.3:6038506-6038525 | MS.gene51989:intron | 35.0% | |
AAATCGCAAGTTAAAGTCCA+GGG | + | chr3.3:6038507-6038526 | MS.gene51989:intron | 35.0% | |
AACAACCAATTCCAAATGGT+TGG | + | chr3.3:6039783-6039802 | MS.gene51989:CDS | 35.0% | |
AACGGAAAGGAAAAAGAAGA+AGG | + | chr3.3:6037651-6037670 | MS.gene51989:CDS | 35.0% | |
AATCAGATCACTATTCATGC+AGG | + | chr3.3:6039882-6039901 | MS.gene51989:CDS | 35.0% | |
ACATTAACGACTTCAGCATT+AGG | - | chr3.3:6040463-6040482 | None:intergenic | 35.0% | |
ACCTTTATCATCATGTGATG+AGG | + | chr3.3:6039614-6039633 | MS.gene51989:CDS | 35.0% | |
ACTATTCATGCAGGTAATCA+TGG | + | chr3.3:6039891-6039910 | MS.gene51989:intron | 35.0% | |
AGCTCAAAGAATCAACAACA+TGG | + | chr3.3:6039813-6039832 | MS.gene51989:CDS | 35.0% | |
AGGAACTAGAGACAAAGATA+TGG | + | chr3.3:6037700-6037719 | MS.gene51989:CDS | 35.0% | |
ATGCTAAGGATACAGCTATT+TGG | + | chr3.3:6039445-6039464 | MS.gene51989:CDS | 35.0% | |
CAAACCTTCTTCAAATCATG+TGG | - | chr3.3:6039324-6039343 | None:intergenic | 35.0% | |
CAACAACAACCAATTCCAAA+TGG | + | chr3.3:6039779-6039798 | MS.gene51989:CDS | 35.0% | |
CACATGATTTGAAGAAGGTT+TGG | + | chr3.3:6039322-6039341 | MS.gene51989:CDS | 35.0% | |
CATTACCAAGACAATGATCA+TGG | + | chr3.3:6039678-6039697 | MS.gene51989:CDS | 35.0% | |
CCTTTATCATCATGTGATGA+GGG | + | chr3.3:6039615-6039634 | MS.gene51989:CDS | 35.0% | |
CTCATCTAAAGATGAATCGA+AGG | - | chr3.3:6040518-6040537 | None:intergenic | 35.0% | |
GAAGGAAATGGGATTTAGTA+AGG | + | chr3.3:6039266-6039285 | MS.gene51989:CDS | 35.0% | |
GAAGGACAAAGTAAACTTTG+AGG | + | chr3.3:6039008-6039027 | MS.gene51989:CDS | 35.0% | |
GACCTACCTGATACAATATT+AGG | + | chr3.3:6039135-6039154 | MS.gene51989:CDS | 35.0% | |
GATGCATGACAAATGTAGAT+AGG | - | chr3.3:6039975-6039994 | None:intergenic | 35.0% | |
GCCAAATATGAAGAACAATG+TGG | + | chr3.3:6039051-6039070 | MS.gene51989:CDS | 35.0% | |
GGAAACAGATGATTATGATG+TGG | + | chr3.3:6039566-6039585 | MS.gene51989:CDS | 35.0% | |
TAACTTTGTGTTGCCACATT+AGG | - | chr3.3:6040595-6040614 | None:intergenic | 35.0% | |
TAGAAATTCTGCTCCATTTG+AGG | - | chr3.3:6040397-6040416 | None:intergenic | 35.0% | |
TATGGAGTAGTACTTGACAA+TGG | + | chr3.3:6038943-6038962 | MS.gene51989:CDS | 35.0% | |
TCTCTTGGCCAAACAATATT+GGG | + | chr3.3:6040620-6040639 | MS.gene51989:CDS | 35.0% | |
TTCTCTTGGCCAAACAATAT+TGG | + | chr3.3:6040619-6040638 | MS.gene51989:CDS | 35.0% | |
! | AGAAAACATCCTTTGGAAAG+CGG | + | chr3.3:6039201-6039220 | MS.gene51989:CDS | 35.0% |
! | CTCCTAATTTTCAGAAGATC+AGG | + | chr3.3:6039382-6039401 | MS.gene51989:CDS | 35.0% |
! | CTCCTGATCTTCTGAAAATT+AGG | - | chr3.3:6039387-6039406 | None:intergenic | 35.0% |
! | GTTGAGACATTTTCATGCAT+TGG | - | chr3.3:6040487-6040506 | None:intergenic | 35.0% |
! | TCCAAAGGATGTTTTCTTTG+GGG | - | chr3.3:6039198-6039217 | None:intergenic | 35.0% |
! | TCTTGATTTGATTACCATGC+AGG | + | chr3.3:6040184-6040203 | MS.gene51989:intron | 35.0% |
!! | TGATCATTGTCTTGGTAATG+TGG | - | chr3.3:6039678-6039697 | None:intergenic | 35.0% |
!! | TGCAAAACAAGATAACGGAA+AGG | + | chr3.3:6037638-6037657 | MS.gene51989:CDS | 35.0% |
!! | TTTTGGTTAAATCCAGGAGT+TGG | - | chr3.3:6040367-6040386 | None:intergenic | 35.0% |
!!! | GAATTTATTTTGCAAGCTCC+TGG | - | chr3.3:6039424-6039443 | None:intergenic | 35.0% |
!!! | TCATGTGGTTTTTTGTATGG+TGG | - | chr3.3:6039309-6039328 | None:intergenic | 35.0% |
!!! | TGCATGTTTTGGTTAAATCC+AGG | - | chr3.3:6040373-6040392 | None:intergenic | 35.0% |
AACATGATTCCTACTCCTTC+TGG | + | chr3.3:6040268-6040287 | MS.gene51989:CDS | 40.0% | |
AACCTCCATGATCATTGTCT+TGG | - | chr3.3:6039686-6039705 | None:intergenic | 40.0% | |
AAGAGAAAGGCTGACCAAAT+AGG | + | chr3.3:6039747-6039766 | MS.gene51989:CDS | 40.0% | |
ACCCCAAAGAAAACATCCTT+TGG | + | chr3.3:6039194-6039213 | MS.gene51989:CDS | 40.0% | |
CAATTCCAAATGGTTGGAGT+TGG | + | chr3.3:6039789-6039808 | MS.gene51989:CDS | 40.0% | |
CAGGTACATGTTAAAGATGG+TGG | + | chr3.3:6038894-6038913 | MS.gene51989:intron | 40.0% | |
CCCTCATCACATGATGATAA+AGG | - | chr3.3:6039618-6039637 | None:intergenic | 40.0% | |
GACAATGGCAAACCAATGAT+TGG | + | chr3.3:6038958-6038977 | MS.gene51989:CDS | 40.0% | |
GGAAAGGAAAAAGAAGAAGG+TGG | + | chr3.3:6037654-6037673 | MS.gene51989:CDS | 40.0% | |
GGACAGGTACATGTTAAAGA+TGG | + | chr3.3:6038891-6038910 | MS.gene51989:intron | 40.0% | |
GGATCAGTTTCAACAGTGAA+TGG | + | chr3.3:6039072-6039091 | MS.gene51989:CDS | 40.0% | |
TACCAAGACAATGATCATGG+AGG | + | chr3.3:6039681-6039700 | MS.gene51989:CDS | 40.0% | |
TGTATCAGGTAGGTCATACA+AGG | - | chr3.3:6039130-6039149 | None:intergenic | 40.0% | |
! | ATGCATCCCAACGTTGATAA+CGG | + | chr3.3:6037603-6037622 | MS.gene51989:CDS | 40.0% |
! | CAAACCAATGATTGGCTCTT+CGG | + | chr3.3:6038966-6038985 | MS.gene51989:CDS | 40.0% |
! | CAACTCCAACCATTTGGAAT+TGG | - | chr3.3:6039791-6039810 | None:intergenic | 40.0% |
! | GAATCATGGTGGAAGGAAAT+GGG | + | chr3.3:6039255-6039274 | MS.gene51989:CDS | 40.0% |
! | GTGATCTGATTTGCAACAGA+AGG | - | chr3.3:6039873-6039892 | None:intergenic | 40.0% |
! | GTGGAATTTTGTGATGTTCG+TGG | + | chr3.3:6038913-6038932 | MS.gene51989:CDS | 40.0% |
! | TGTTGCTTGATGAGCAAGTA+AGG | + | chr3.3:6039097-6039116 | MS.gene51989:CDS | 40.0% |
! | TTTTCCGAAGAGCCAATCAT+TGG | - | chr3.3:6038973-6038992 | None:intergenic | 40.0% |
!! | AAAGGATGTTTTCTTTGGGG+TGG | - | chr3.3:6039195-6039214 | None:intergenic | 40.0% |
!! | CGAATCCTTTTGATAGCATG+GGG | + | chr3.3:6037964-6037983 | MS.gene51989:intron | 40.0% |
!! | GCGAATCCTTTTGATAGCAT+GGG | + | chr3.3:6037963-6037982 | MS.gene51989:intron | 40.0% |
!! | GGAGTATTGTTAGACATTCC+AGG | + | chr3.3:6039403-6039422 | MS.gene51989:CDS | 40.0% |
!! | GTTGGAATCATGTTGGTAAC+TGG | - | chr3.3:6040349-6040368 | None:intergenic | 40.0% |
!! | TAGGGGTGCTAATAAGAGAA+AGG | + | chr3.3:6039734-6039753 | MS.gene51989:CDS | 40.0% |
!!! | GTGGTTTTTTGTATGGTGGT+GGG | - | chr3.3:6039305-6039324 | None:intergenic | 40.0% |
!!! | TGTGGTTTTTTGTATGGTGG+TGG | - | chr3.3:6039306-6039325 | None:intergenic | 40.0% |
ACAGTACATGTCAGCTCAAC+GGG | - | chr3.3:6038871-6038890 | None:intergenic | 45.0% | |
ACCAACATGATTCCAACTCC+TGG | + | chr3.3:6040352-6040371 | MS.gene51989:CDS | 45.0% | |
ACCAACCGAGCTACTTATGT+AGG | + | chr3.3:6040085-6040104 | MS.gene51989:intron | 45.0% | |
AGAAAGGCTGACCAAATAGG+AGG | + | chr3.3:6039750-6039769 | MS.gene51989:CDS | 45.0% | |
AGCTTCCAACTCCAACCATT+TGG | - | chr3.3:6039797-6039816 | None:intergenic | 45.0% | |
ATGAATCATGTTGTGCCAGC+TGG | + | chr3.3:6040244-6040263 | MS.gene51989:CDS | 45.0% | |
CACAGTACATGTCAGCTCAA+CGG | - | chr3.3:6038872-6038891 | None:intergenic | 45.0% | |
CCAAAACATGCAGCCTCAAA+TGG | + | chr3.3:6040381-6040400 | MS.gene51989:CDS | 45.0% | |
GCATATCGAAGTCTCCATGT+TGG | - | chr3.3:6039649-6039668 | None:intergenic | 45.0% | |
GGTAGGTCATACAAGGAGTA+AGG | - | chr3.3:6039123-6039142 | None:intergenic | 45.0% | |
GTGAACTAGGGTAAACTTGC+AGG | + | chr3.3:6038573-6038592 | MS.gene51989:intron | 45.0% | |
TACCATGCAGGTAATGACTC+AGG | + | chr3.3:6040196-6040215 | MS.gene51989:intron | 45.0% | |
TCATATTTGGCGATTGCAGC+TGG | - | chr3.3:6039042-6039061 | None:intergenic | 45.0% | |
TCCAGGAGTTGGAATCATGT+TGG | - | chr3.3:6040356-6040375 | None:intergenic | 45.0% | |
TCCTACATAAGTAGCTCGGT+TGG | - | chr3.3:6040089-6040108 | None:intergenic | 45.0% | |
TGCTACCCCATGCTATCAAA+AGG | - | chr3.3:6037972-6037991 | None:intergenic | 45.0% | |
TGGTAATCACCAGAAGGAGT+AGG | - | chr3.3:6040280-6040299 | None:intergenic | 45.0% | |
! | CGAATCATGGTGGAAGGAAA+TGG | + | chr3.3:6039254-6039273 | MS.gene51989:CDS | 45.0% |
! | GTGCACAAGAGGGCATATTA+AGG | + | chr3.3:6037817-6037836 | MS.gene51989:CDS | 45.0% |
! | TGAGGGTTCTGATACCAACA+TGG | + | chr3.3:6039632-6039651 | MS.gene51989:CDS | 45.0% |
! | TGTTGCTGCTTCCTCCTATT+TGG | - | chr3.3:6039764-6039783 | None:intergenic | 45.0% |
! | TTGATAGCATGGGGTAGCAT+TGG | + | chr3.3:6037973-6037992 | MS.gene51989:intron | 45.0% |
!! | CCATTTGAGGCTGCATGTTT+TGG | - | chr3.3:6040384-6040403 | None:intergenic | 45.0% |
!! | GAAGCACCGTTATCAACGTT+GGG | - | chr3.3:6037612-6037631 | None:intergenic | 45.0% |
!! | GGCGAATCCTTTTGATAGCA+TGG | + | chr3.3:6037962-6037981 | MS.gene51989:intron | 45.0% |
!! | TGAAGCACCGTTATCAACGT+TGG | - | chr3.3:6037613-6037632 | None:intergenic | 45.0% |
!!! | TTTTGTATGGTGGTGGGAGT+GGG | - | chr3.3:6039299-6039318 | None:intergenic | 45.0% |
!!! | TTTTTGTATGGTGGTGGGAG+TGG | - | chr3.3:6039300-6039319 | None:intergenic | 45.0% |
ACAATGGCTCGTGCACAAGA+GGG | + | chr3.3:6037807-6037826 | MS.gene51989:CDS | 50.0% | |
AGCTGACATGTACTGTGGAC+AGG | + | chr3.3:6038875-6038894 | MS.gene51989:intron | 50.0% | |
CAACAGGGAACGAATCATGG+TGG | + | chr3.3:6039244-6039263 | MS.gene51989:CDS | 50.0% | |
CACCATGATTCGTTCCCTGT+TGG | - | chr3.3:6039246-6039265 | None:intergenic | 50.0% | |
CAGTACATGTCAGCTCAACG+GGG | - | chr3.3:6038870-6038889 | None:intergenic | 50.0% | |
CGTTGAGCTGACATGTACTG+TGG | + | chr3.3:6038870-6038889 | MS.gene51989:intron | 50.0% | |
CTCCTGAGTCATTACCTGCA+TGG | - | chr3.3:6040201-6040220 | None:intergenic | 50.0% | |
CTTCGGAAAATCTACGCGGT+TGG | + | chr3.3:6038983-6039002 | MS.gene51989:CDS | 50.0% | |
GATGTTCGTGGCTTCGTCTA+TGG | + | chr3.3:6038925-6038944 | MS.gene51989:CDS | 50.0% | |
GCAGGTAATGACTCAGGAGA+AGG | + | chr3.3:6040202-6040221 | MS.gene51989:intron | 50.0% | |
GCTTGCTCATGTTGGTCAAG+AGG | - | chr3.3:6039843-6039862 | None:intergenic | 50.0% | |
GGCTCTTCGGAAAATCTACG+CGG | + | chr3.3:6038979-6038998 | MS.gene51989:CDS | 50.0% | |
GTAGGAATCATGTTGCCAGC+TGG | - | chr3.3:6040262-6040281 | None:intergenic | 50.0% | |
! | AATTTCTCTAGCTTCGCCGC+TGG | + | chr3.3:6038450-6038469 | MS.gene51989:intron | 50.0% |
! | AGGGAACGAATCATGGTGGA+AGG | + | chr3.3:6039248-6039267 | MS.gene51989:CDS | 50.0% |
! | GTACTGCAGCTTGCTCATGT+TGG | - | chr3.3:6039851-6039870 | None:intergenic | 50.0% |
!! | AAATCTACGCGGTTGGTGGA+AGG | + | chr3.3:6038990-6039009 | MS.gene51989:CDS | 50.0% |
AAAGCGGCATTCCTCCACCA+TGG | + | chr3.3:6039217-6039236 | MS.gene51989:CDS | 55.0% | |
CGGAAAATCTACGCGGTTGG+TGG | + | chr3.3:6038986-6039005 | MS.gene51989:CDS | 55.0% | |
GACAATGGCTCGTGCACAAG+AGG | + | chr3.3:6037806-6037825 | MS.gene51989:CDS | 55.0% | |
GGCCAACAGGGAACGAATCA+TGG | + | chr3.3:6039241-6039260 | MS.gene51989:CDS | 55.0% | |
!! | GGAGGAATGCCGCTTTCCAA+AGG | - | chr3.3:6039213-6039232 | None:intergenic | 55.0% |
CTCCACCATGGTGGCCAACA+GGG | + | chr3.3:6039229-6039248 | MS.gene51989:CDS | 60.0% | |
TCGTTCCCTGTTGGCCACCA+TGG | - | chr3.3:6039237-6039256 | None:intergenic | 60.0% | |
TTCCCTGTTGGCCACCATGG+TGG | - | chr3.3:6039234-6039253 | None:intergenic | 60.0% | |
CCTCCACCATGGTGGCCAAC+AGG | + | chr3.3:6039228-6039247 | MS.gene51989:CDS | 65.0% | |
CCTGTTGGCCACCATGGTGG+AGG | - | chr3.3:6039231-6039250 | None:intergenic | 65.0% | |
GCGGCATTCCTCCACCATGG+TGG | + | chr3.3:6039220-6039239 | MS.gene51989:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 6037603 | 6040648 | 6037603 | ID=MS.gene51989 |
chr3.3 | mRNA | 6037603 | 6040648 | 6037603 | ID=MS.gene51989.t1;Parent=MS.gene51989 |
chr3.3 | exon | 6037603 | 6037838 | 6037603 | ID=MS.gene51989.t1.exon1;Parent=MS.gene51989.t1 |
chr3.3 | CDS | 6037603 | 6037838 | 6037603 | ID=cds.MS.gene51989.t1;Parent=MS.gene51989.t1 |
chr3.3 | exon | 6038897 | 6039903 | 6038897 | ID=MS.gene51989.t1.exon2;Parent=MS.gene51989.t1 |
chr3.3 | CDS | 6038897 | 6039903 | 6038897 | ID=cds.MS.gene51989.t1;Parent=MS.gene51989.t1 |
chr3.3 | exon | 6040206 | 6040648 | 6040206 | ID=MS.gene51989.t1.exon3;Parent=MS.gene51989.t1 |
chr3.3 | CDS | 6040206 | 6040648 | 6040206 | ID=cds.MS.gene51989.t1;Parent=MS.gene51989.t1 |
Gene Sequence |
Protein sequence |