AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51989


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51989.t1 MTR_3g010790 78.327 526 46 10 81 561 1 503 0.0 811
MS.gene51989.t1 MTR_6g060600 46.914 648 233 16 9 553 18 657 5.24e-166 487
MS.gene51989.t1 MTR_6g460640 46.349 671 232 18 1 553 1 661 1.07e-163 481
MS.gene51989.t1 MTR_3g078770 51.736 288 128 5 32 313 51 333 1.11e-98 312
MS.gene51989.t1 MTR_5g087790 50.000 298 121 5 29 310 45 330 7.80e-98 310
MS.gene51989.t1 MTR_2g098470 51.601 281 119 5 11 282 18 290 1.70e-93 298
MS.gene51989.t1 MTR_3g087530 47.600 250 127 2 33 279 32 280 2.23e-81 261
MS.gene51989.t1 MTR_8g091370 49.421 259 122 5 26 279 17 271 1.34e-75 247
MS.gene51989.t1 MTR_1g024420 64.078 103 29 1 29 123 6 108 6.77e-36 130
MS.gene51989.t1 MTR_3g010785 92.500 80 5 1 1 79 1 80 6.99e-25 98.6
MS.gene51989.t1 MTR_6g060630 60.227 88 19 3 437 509 120 206 4.40e-21 92.0
MS.gene51989.t1 MTR_7g095580 36.634 101 59 1 70 165 1 101 1.15e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51989.t1 AT2G27050 53.532 269 110 4 29 287 45 308 1.26e-99 313
MS.gene51989.t1 AT3G20770 49.840 313 145 5 5 310 23 330 1.60e-97 310
MS.gene51989.t1 AT1G73730 48.418 316 134 7 16 313 11 315 1.41e-93 297
MS.gene51989.t1 AT1G73730 48.418 316 134 7 16 313 23 327 2.18e-93 297
MS.gene51989.t1 AT5G10120 45.076 264 131 5 26 279 16 275 4.16e-76 249
MS.gene51989.t1 AT5G21120 43.493 292 143 5 38 310 53 341 7.75e-76 249
MS.gene51989.t1 AT5G21120 43.493 292 143 5 38 310 53 341 7.75e-76 249
MS.gene51989.t1 AT5G21120 43.493 292 143 5 38 310 60 348 7.87e-76 249
MS.gene51989.t1 AT5G65100 41.935 279 137 4 25 281 32 307 1.78e-72 242

Find 117 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACATTGTTCTTCATATT+TGG 0.128045 3.3:-6039052 None:intergenic
TTCTCTTGGCCAAACAATAT+TGG 0.211643 3.3:+6040619 MS.gene51989:CDS
AAGGAGAAGATGTTTCTATT+TGG 0.240323 3.3:+6040221 MS.gene51989:CDS
AGATTTGAGGCTGAAAATTT+TGG 0.272574 3.3:-6040297 None:intergenic
GAAGAATTTAAGAATGATTC+AGG 0.273405 3.3:-6039513 None:intergenic
ATGCTAAGGATACAGCTATT+TGG 0.278436 3.3:+6039445 MS.gene51989:CDS
CTCCTGATCTTCTGAAAATT+AGG 0.282984 3.3:-6039384 None:intergenic
TGTTGCTGCTTCCTCCTATT+TGG 0.284096 3.3:-6039761 None:intergenic
CCATTTGAGGCTGCATGTTT+TGG 0.285639 3.3:-6040381 None:intergenic
TCTCTTGGCCAAACAATATT+GGG 0.290198 3.3:+6040620 MS.gene51989:CDS
CACATGATTTGAAGAAGGTT+TGG 0.299071 3.3:+6039322 MS.gene51989:CDS
TAACTTTGTGTTGCCACATT+AGG 0.315473 3.3:-6040592 None:intergenic
CAACTCCAACCATTTGGAAT+TGG 0.333568 3.3:-6039788 None:intergenic
TTCATCTTTAGATGAGTTGA+TGG 0.334799 3.3:+6040522 MS.gene51989:CDS
TATTAATTCCCAATATTGTT+TGG 0.336531 3.3:-6040628 None:intergenic
GATGTTCGTGGCTTCGTCTA+TGG 0.352458 3.3:+6038925 MS.gene51989:CDS
AGCTTCCAACTCCAACCATT+TGG 0.359268 3.3:-6039794 None:intergenic
CAAACCAATGATTGGCTCTT+CGG 0.371062 3.3:+6038966 MS.gene51989:CDS
ATTGAACCTAATATTGTATC+AGG 0.373081 3.3:-6039141 None:intergenic
CGAATCATGGTGGAAGGAAA+TGG 0.374307 3.3:+6039254 MS.gene51989:CDS
CCTCCACCATGGTGGCCAAC+AGG 0.377036 3.3:+6039228 MS.gene51989:CDS
GACCTACCTGATACAATATT+AGG 0.387617 3.3:+6039135 MS.gene51989:CDS
TCATATTTGGCGATTGCAGC+TGG 0.389765 3.3:-6039039 None:intergenic
AAGAGAAAGGCTGACCAAAT+AGG 0.390964 3.3:+6039747 MS.gene51989:CDS
TTCTTAAATTCTTCTTGTGT+TGG 0.395347 3.3:+6039522 MS.gene51989:CDS
CACAAAGTTATGATTTCTCT+TGG 0.396627 3.3:+6040605 MS.gene51989:CDS
GTTGGAATCATGTTGGTAAC+TGG 0.406571 3.3:-6040346 None:intergenic
TAGAAATTCTGCTCCATTTG+AGG 0.408160 3.3:-6040394 None:intergenic
GTGCACAAGAGGGCATATTA+AGG 0.410074 3.3:+6037817 MS.gene51989:CDS
ATCATTGAAGTGTAGATTTG+AGG 0.410822 3.3:-6040310 None:intergenic
CCAAAACATGCAGCCTCAAA+TGG 0.411657 3.3:+6040381 MS.gene51989:CDS
CCCTCATCACATGATGATAA+AGG 0.413199 3.3:-6039615 None:intergenic
TATTAGTTATGAAGAAAGAT+TGG 0.415453 3.3:+6039476 MS.gene51989:CDS
ACCCCAAAGAAAACATCCTT+TGG 0.424688 3.3:+6039194 MS.gene51989:CDS
AACATGATTCCTACTCCTTC+TGG 0.428508 3.3:+6040268 MS.gene51989:CDS
CGGAAAATCTACGCGGTTGG+TGG 0.429144 3.3:+6038986 MS.gene51989:CDS
CAATCTTGTTATTGAGAGTA+GGG 0.434145 3.3:+6039716 MS.gene51989:CDS
GGAGTATTGTTAGACATTCC+AGG 0.438919 3.3:+6039403 MS.gene51989:CDS
AGGAACTAGAGACAAAGATA+TGG 0.443648 3.3:+6037700 MS.gene51989:CDS
GACAATGGCTCGTGCACAAG+AGG 0.447975 3.3:+6037806 MS.gene51989:CDS
TGAAAGTAGTTATGAGTTTG+TGG 0.453514 3.3:+6039545 MS.gene51989:CDS
GAAGGAAATGGGATTTAGTA+AGG 0.462346 3.3:+6039266 MS.gene51989:CDS
CACCATGATTCGTTCCCTGT+TGG 0.467429 3.3:-6039243 None:intergenic
GACAATGGCAAACCAATGAT+TGG 0.467907 3.3:+6038958 MS.gene51989:CDS
AAAACCACATGATTTGAAGA+AGG 0.473630 3.3:+6039317 MS.gene51989:CDS
TGTTGCTTGATGAGCAAGTA+AGG 0.474666 3.3:+6039097 MS.gene51989:CDS
CAATTCCAAATGGTTGGAGT+TGG 0.477252 3.3:+6039789 MS.gene51989:CDS
GAAGCACCGTTATCAACGTT+GGG 0.485553 3.3:-6037609 None:intergenic
GGCCAACAGGGAACGAATCA+TGG 0.488109 3.3:+6039241 MS.gene51989:CDS
ACCAACATGATTCCAACTCC+TGG 0.488765 3.3:+6040352 MS.gene51989:CDS
GCAAAATAAATTCAATGCTA+AGG 0.497897 3.3:+6039431 MS.gene51989:CDS
CCTGTTGGCCACCATGGTGG+AGG 0.500513 3.3:-6039228 None:intergenic
AAAGTAAACTTTGAGGAAAA+CGG 0.500540 3.3:+6039015 MS.gene51989:CDS
AACCTCCATGATCATTGTCT+TGG 0.503715 3.3:-6039683 None:intergenic
ACATTAACGACTTCAGCATT+AGG 0.506244 3.3:-6040460 None:intergenic
GGTAGGTCATACAAGGAGTA+AGG 0.514149 3.3:-6039120 None:intergenic
GAATCATGGTGGAAGGAAAT+GGG 0.515364 3.3:+6039255 MS.gene51989:CDS
AACAATGCAAAACAAGATAA+CGG 0.516750 3.3:+6037633 MS.gene51989:CDS
TTGGAAAATTTGTGTGTTGA+CGG 0.518161 3.3:+6039341 MS.gene51989:CDS
AACAACCAATTCCAAATGGT+TGG 0.519990 3.3:+6039783 MS.gene51989:CDS
AAATCTACGCGGTTGGTGGA+AGG 0.522592 3.3:+6038990 MS.gene51989:CDS
AAGTGACAATAAAACATCAC+TGG 0.527333 3.3:+6037767 MS.gene51989:CDS
CAAACCTTCTTCAAATCATG+TGG 0.527454 3.3:-6039321 None:intergenic
CAACAACAACCAATTCCAAA+TGG 0.529692 3.3:+6039779 MS.gene51989:CDS
CATTACCAAGACAATGATCA+TGG 0.535851 3.3:+6039678 MS.gene51989:CDS
GGATCAGTTTCAACAGTGAA+TGG 0.537851 3.3:+6039072 MS.gene51989:CDS
ACCTTTATCATCATGTGATG+AGG 0.538023 3.3:+6039614 MS.gene51989:CDS
ACAATCTTGTTATTGAGAGT+AGG 0.541787 3.3:+6039715 MS.gene51989:CDS
CCTTTATCATCATGTGATGA+GGG 0.544805 3.3:+6039615 MS.gene51989:CDS
ATGAATCATGTTGTGCCAGC+TGG 0.545213 3.3:+6040244 MS.gene51989:CDS
GTAGGAATCATGTTGCCAGC+TGG 0.547013 3.3:-6040259 None:intergenic
ATGCATCCCAACGTTGATAA+CGG 0.547251 3.3:+6037603 MS.gene51989:CDS
CAGAATTTCTATGATCAACA+AGG 0.550654 3.3:+6040406 MS.gene51989:CDS
TAGGGGTGCTAATAAGAGAA+AGG 0.554483 3.3:+6039734 MS.gene51989:CDS
TGAAGCACCGTTATCAACGT+TGG 0.555762 3.3:-6037610 None:intergenic
CTCATCTAAAGATGAATCGA+AGG 0.557404 3.3:-6040515 None:intergenic
TGATCATTGTCTTGGTAATG+TGG 0.562092 3.3:-6039675 None:intergenic
CTTCGGAAAATCTACGCGGT+TGG 0.564527 3.3:+6038983 MS.gene51989:CDS
AATCAGATCACTATTCATGC+AGG 0.564840 3.3:+6039882 MS.gene51989:CDS
AAACATAGATATGACTATTG+AGG 0.565786 3.3:+6037680 MS.gene51989:CDS
ACTTATTGATTCTCCTAATG+TGG 0.567478 3.3:+6040579 MS.gene51989:CDS
TCGTTCCCTGTTGGCCACCA+TGG 0.567749 3.3:-6039234 None:intergenic
CAGGTACATGTTAAAGATGG+TGG 0.568652 3.3:+6038894 MS.gene51989:intron
GAAGGACAAAGTAAACTTTG+AGG 0.573836 3.3:+6039008 MS.gene51989:CDS
GGAGGAATGCCGCTTTCCAA+AGG 0.574058 3.3:-6039210 None:intergenic
CTCCACCATGGTGGCCAACA+GGG 0.575877 3.3:+6039229 MS.gene51989:CDS
TTCCCTGTTGGCCACCATGG+TGG 0.581079 3.3:-6039231 None:intergenic
TGGTAATCACCAGAAGGAGT+AGG 0.582343 3.3:-6040277 None:intergenic
TACCATGCAGGTAATGACTC+AGG 0.590669 3.3:+6040196 MS.gene51989:intron
GTGATCTGATTTGCAACAGA+AGG 0.591015 3.3:-6039870 None:intergenic
TGTATCAGGTAGGTCATACA+AGG 0.591621 3.3:-6039127 None:intergenic
AGAAAACATCCTTTGGAAAG+CGG 0.596755 3.3:+6039201 MS.gene51989:CDS
GCTTGCTCATGTTGGTCAAG+AGG 0.599308 3.3:-6039840 None:intergenic
TCCAGGAGTTGGAATCATGT+TGG 0.604429 3.3:-6040353 None:intergenic
ACAATTGAAAAGAAAGACAA+TGG 0.608503 3.3:+6037791 MS.gene51989:CDS
AGGGAACGAATCATGGTGGA+AGG 0.608968 3.3:+6039248 MS.gene51989:CDS
GCAGGTAATGACTCAGGAGA+AGG 0.617966 3.3:+6040202 MS.gene51989:intron
GTACTGCAGCTTGCTCATGT+TGG 0.618229 3.3:-6039848 None:intergenic
AGAAAGGCTGACCAAATAGG+AGG 0.621759 3.3:+6039750 MS.gene51989:CDS
AGAATTTCTATGATCAACAA+GGG 0.625036 3.3:+6040407 MS.gene51989:CDS
GCATATCGAAGTCTCCATGT+TGG 0.635104 3.3:-6039646 None:intergenic
AATCTTGTTATTGAGAGTAG+GGG 0.639924 3.3:+6039717 MS.gene51989:CDS
TGCAAAACAAGATAACGGAA+AGG 0.654316 3.3:+6037638 MS.gene51989:CDS
ACAATGGCTCGTGCACAAGA+GGG 0.658700 3.3:+6037807 MS.gene51989:CDS
GCCAAATATGAAGAACAATG+TGG 0.678186 3.3:+6039051 MS.gene51989:CDS
AGCTCAAAGAATCAACAACA+TGG 0.679952 3.3:+6039813 MS.gene51989:CDS
GCGGCATTCCTCCACCATGG+TGG 0.682914 3.3:+6039220 MS.gene51989:CDS
GGACAGGTACATGTTAAAGA+TGG 0.686569 3.3:+6038891 MS.gene51989:intron
AACCTAATATTGTATCAGGT+AGG 0.686602 3.3:-6039137 None:intergenic
TATGGAGTAGTACTTGACAA+TGG 0.689392 3.3:+6038943 MS.gene51989:CDS
GAATTTCTATGATCAACAAG+GGG 0.696998 3.3:+6040408 MS.gene51989:CDS
GGAAACAGATGATTATGATG+TGG 0.698666 3.3:+6039566 MS.gene51989:CDS
AAAGCGGCATTCCTCCACCA+TGG 0.708484 3.3:+6039217 MS.gene51989:CDS
TGAGGGTTCTGATACCAACA+TGG 0.719170 3.3:+6039632 MS.gene51989:CDS
GGCTCTTCGGAAAATCTACG+CGG 0.742332 3.3:+6038979 MS.gene51989:CDS
CAACAGGGAACGAATCATGG+TGG 0.754137 3.3:+6039244 MS.gene51989:CDS
TACCAAGACAATGATCATGG+AGG 0.766248 3.3:+6039681 MS.gene51989:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATATATTAAATTTAA+AGG - chr3.3:6038371-6038390 None:intergenic 0.0%
!! AAAAATTAGCATAAATTAAA+AGG + chr3.3:6038096-6038115 MS.gene51989:intron 10.0%
!! GTAACTAAAAATATATTATT+GGG - chr3.3:6038056-6038075 None:intergenic 10.0%
!! TAACTAAAAATATATTATTG+GGG - chr3.3:6038055-6038074 None:intergenic 10.0%
!! TGTTTAATCTTTATAAAATT+AGG - chr3.3:6038341-6038360 None:intergenic 10.0%
!! TTTACTTCATATTAAAATTA+TGG - chr3.3:6038738-6038757 None:intergenic 10.0%
!!! TCAATAGAAATAAAAATTTT+GGG - chr3.3:6038003-6038022 None:intergenic 10.0%
!!! TTCAATAGAAATAAAAATTT+TGG - chr3.3:6038004-6038023 None:intergenic 10.0%
!! CCTAAAAAAATATTTGTATT+TGG + chr3.3:6038415-6038434 MS.gene51989:intron 15.0%
!! GGTAACTAAAAATATATTAT+TGG - chr3.3:6038057-6038076 None:intergenic 15.0%
!!! CAATAGAAATAAAAATTTTG+GGG - chr3.3:6038002-6038021 None:intergenic 15.0%
!!! CCAAATACAAATATTTTTTT+AGG - chr3.3:6038418-6038437 None:intergenic 15.0%
!!! TACTTAAAAACTAGTTTTTA+GGG + chr3.3:6040015-6040034 MS.gene51989:intron 15.0%
!!! TTACTTAAAAACTAGTTTTT+AGG + chr3.3:6040014-6040033 MS.gene51989:intron 15.0%
!! AACCATTAGGTATATTAATA+TGG + chr3.3:6038022-6038041 MS.gene51989:intron 20.0%
!! TATTAGTTATGAAGAAAGAT+TGG + chr3.3:6039476-6039495 MS.gene51989:CDS 20.0%
!!! ATATTTTAGTTAGTGAACTA+GGG + chr3.3:6038561-6038580 MS.gene51989:intron 20.0%
!!! CCTGAAAATATTCTTTAAAA+CGG - chr3.3:6037942-6037961 None:intergenic 20.0%
!!! CGTTTTAAAGAATATTTTCA+GGG + chr3.3:6037940-6037959 MS.gene51989:intron 20.0%
!!! GTTTTAAAGAATATTTTCAG+GGG + chr3.3:6037941-6037960 MS.gene51989:intron 20.0%
!!! TATTTTAATTCTATCTCTTG+AGG + chr3.3:6038474-6038493 MS.gene51989:intron 20.0%
!!! TTTATTTCTATTGAACCATT+AGG + chr3.3:6038009-6038028 MS.gene51989:intron 20.0%
!!! TTTGCAAATAAATTTGTTTG+AGG - chr3.3:6038078-6038097 None:intergenic 20.0%
! AAACATAGATATGACTATTG+AGG + chr3.3:6037680-6037699 MS.gene51989:CDS 25.0%
! AACAATGCAAAACAAGATAA+CGG + chr3.3:6037633-6037652 MS.gene51989:CDS 25.0%
! AAGTCAAAGTTCTCAAAATT+GGG - chr3.3:6038825-6038844 None:intergenic 25.0%
! ACAATTGAAAAGAAAGACAA+TGG + chr3.3:6037791-6037810 MS.gene51989:CDS 25.0%
! AGAATTTCTATGATCAACAA+GGG + chr3.3:6040407-6040426 MS.gene51989:CDS 25.0%
! AGCCATATTAATATACCTAA+TGG - chr3.3:6038027-6038046 None:intergenic 25.0%
! ATTGAACCTAATATTGTATC+AGG - chr3.3:6039144-6039163 None:intergenic 25.0%
! GAAGAATTTAAGAATGATTC+AGG - chr3.3:6039516-6039535 None:intergenic 25.0%
! GATAGAATTAAAATATCCAG+CGG - chr3.3:6038469-6038488 None:intergenic 25.0%
! GCAAAATAAATTCAATGCTA+AGG + chr3.3:6039431-6039450 MS.gene51989:CDS 25.0%
! TCAATAGTCAAACATAATAG+AGG + chr3.3:6038218-6038237 MS.gene51989:intron 25.0%
! TTCTTAAATTCTTCTTGTGT+TGG + chr3.3:6039522-6039541 MS.gene51989:CDS 25.0%
!! AAAGTAAACTTTGAGGAAAA+CGG + chr3.3:6039015-6039034 MS.gene51989:CDS 25.0%
!! AAGCTAGAGAAATTTTTACA+AGG - chr3.3:6038444-6038463 None:intergenic 25.0%
!! AGCTAGAGAAATTTTTACAA+GGG - chr3.3:6038443-6038462 None:intergenic 25.0%
!!! AAATCATGTGGTTTTTTGTA+TGG - chr3.3:6039312-6039331 None:intergenic 25.0%
!!! CATATTTTAGTTAGTGAACT+AGG + chr3.3:6038560-6038579 MS.gene51989:intron 25.0%
!!! CCGTTTTAAAGAATATTTTC+AGG + chr3.3:6037939-6037958 MS.gene51989:intron 25.0%
!!! GGATCATTTTCAAGTTTAAT+TGG + chr3.3:6038528-6038547 MS.gene51989:intron 25.0%
AAAACCACATGATTTGAAGA+AGG + chr3.3:6039317-6039336 MS.gene51989:CDS 30.0%
AACCTAATATTGTATCAGGT+AGG - chr3.3:6039140-6039159 None:intergenic 30.0%
AAGTGACAATAAAACATCAC+TGG + chr3.3:6037767-6037786 MS.gene51989:CDS 30.0%
ATCATTGAAGTGTAGATTTG+AGG - chr3.3:6040313-6040332 None:intergenic 30.0%
ATGCATGACAAATGTAGATA+GGG - chr3.3:6039974-6039993 None:intergenic 30.0%
CAAGTCAAAGTTCTCAAAAT+TGG - chr3.3:6038826-6038845 None:intergenic 30.0%
CACAAAGTTATGATTTCTCT+TGG + chr3.3:6040605-6040624 MS.gene51989:CDS 30.0%
CAGAATTTCTATGATCAACA+AGG + chr3.3:6040406-6040425 MS.gene51989:CDS 30.0%
GAATTTCTATGATCAACAAG+GGG + chr3.3:6040408-6040427 MS.gene51989:CDS 30.0%
TCCACATTGTTCTTCATATT+TGG - chr3.3:6039055-6039074 None:intergenic 30.0%
TGAAAGTAGTTATGAGTTTG+TGG + chr3.3:6039545-6039564 MS.gene51989:CDS 30.0%
TTAAACTTGAAAATGATCCC+TGG - chr3.3:6038527-6038546 None:intergenic 30.0%
TTGGAAAATTTGTGTGTTGA+CGG + chr3.3:6039341-6039360 MS.gene51989:CDS 30.0%
! AAGGAGAAGATGTTTCTATT+TGG + chr3.3:6040221-6040240 MS.gene51989:CDS 30.0%
! GCTAGAGAAATTTTTACAAG+GGG - chr3.3:6038442-6038461 None:intergenic 30.0%
! TTCATCTTTAGATGAGTTGA+TGG + chr3.3:6040522-6040541 MS.gene51989:CDS 30.0%
! TTCCAAAGGATGTTTTCTTT+GGG - chr3.3:6039199-6039218 None:intergenic 30.0%
! TTTCCAAAGGATGTTTTCTT+TGG - chr3.3:6039200-6039219 None:intergenic 30.0%
! TTTTTCCTACATAAGTAGCT+CGG - chr3.3:6040093-6040112 None:intergenic 30.0%
!! AAATTTTGGTAATCACCAGA+AGG - chr3.3:6040286-6040305 None:intergenic 30.0%
!! AATCTTGTTATTGAGAGTAG+GGG + chr3.3:6039717-6039736 MS.gene51989:CDS 30.0%
!! ACAATCTTGTTATTGAGAGT+AGG + chr3.3:6039715-6039734 MS.gene51989:CDS 30.0%
!! ACTTATTGATTCTCCTAATG+TGG + chr3.3:6040579-6040598 MS.gene51989:CDS 30.0%
!! AGATTTGAGGCTGAAAATTT+TGG - chr3.3:6040300-6040319 None:intergenic 30.0%
!! CAATCTTGTTATTGAGAGTA+GGG + chr3.3:6039716-6039735 MS.gene51989:CDS 30.0%
AAAATCGCAAGTTAAAGTCC+AGG + chr3.3:6038506-6038525 MS.gene51989:intron 35.0%
AAATCGCAAGTTAAAGTCCA+GGG + chr3.3:6038507-6038526 MS.gene51989:intron 35.0%
AACAACCAATTCCAAATGGT+TGG + chr3.3:6039783-6039802 MS.gene51989:CDS 35.0%
AACGGAAAGGAAAAAGAAGA+AGG + chr3.3:6037651-6037670 MS.gene51989:CDS 35.0%
AATCAGATCACTATTCATGC+AGG + chr3.3:6039882-6039901 MS.gene51989:CDS 35.0%
ACATTAACGACTTCAGCATT+AGG - chr3.3:6040463-6040482 None:intergenic 35.0%
ACCTTTATCATCATGTGATG+AGG + chr3.3:6039614-6039633 MS.gene51989:CDS 35.0%
ACTATTCATGCAGGTAATCA+TGG + chr3.3:6039891-6039910 MS.gene51989:intron 35.0%
AGCTCAAAGAATCAACAACA+TGG + chr3.3:6039813-6039832 MS.gene51989:CDS 35.0%
AGGAACTAGAGACAAAGATA+TGG + chr3.3:6037700-6037719 MS.gene51989:CDS 35.0%
ATGCTAAGGATACAGCTATT+TGG + chr3.3:6039445-6039464 MS.gene51989:CDS 35.0%
CAAACCTTCTTCAAATCATG+TGG - chr3.3:6039324-6039343 None:intergenic 35.0%
CAACAACAACCAATTCCAAA+TGG + chr3.3:6039779-6039798 MS.gene51989:CDS 35.0%
CACATGATTTGAAGAAGGTT+TGG + chr3.3:6039322-6039341 MS.gene51989:CDS 35.0%
CATTACCAAGACAATGATCA+TGG + chr3.3:6039678-6039697 MS.gene51989:CDS 35.0%
CCTTTATCATCATGTGATGA+GGG + chr3.3:6039615-6039634 MS.gene51989:CDS 35.0%
CTCATCTAAAGATGAATCGA+AGG - chr3.3:6040518-6040537 None:intergenic 35.0%
GAAGGAAATGGGATTTAGTA+AGG + chr3.3:6039266-6039285 MS.gene51989:CDS 35.0%
GAAGGACAAAGTAAACTTTG+AGG + chr3.3:6039008-6039027 MS.gene51989:CDS 35.0%
GACCTACCTGATACAATATT+AGG + chr3.3:6039135-6039154 MS.gene51989:CDS 35.0%
GATGCATGACAAATGTAGAT+AGG - chr3.3:6039975-6039994 None:intergenic 35.0%
GCCAAATATGAAGAACAATG+TGG + chr3.3:6039051-6039070 MS.gene51989:CDS 35.0%
GGAAACAGATGATTATGATG+TGG + chr3.3:6039566-6039585 MS.gene51989:CDS 35.0%
TAACTTTGTGTTGCCACATT+AGG - chr3.3:6040595-6040614 None:intergenic 35.0%
TAGAAATTCTGCTCCATTTG+AGG - chr3.3:6040397-6040416 None:intergenic 35.0%
TATGGAGTAGTACTTGACAA+TGG + chr3.3:6038943-6038962 MS.gene51989:CDS 35.0%
TCTCTTGGCCAAACAATATT+GGG + chr3.3:6040620-6040639 MS.gene51989:CDS 35.0%
TTCTCTTGGCCAAACAATAT+TGG + chr3.3:6040619-6040638 MS.gene51989:CDS 35.0%
! AGAAAACATCCTTTGGAAAG+CGG + chr3.3:6039201-6039220 MS.gene51989:CDS 35.0%
! CTCCTAATTTTCAGAAGATC+AGG + chr3.3:6039382-6039401 MS.gene51989:CDS 35.0%
! CTCCTGATCTTCTGAAAATT+AGG - chr3.3:6039387-6039406 None:intergenic 35.0%
! GTTGAGACATTTTCATGCAT+TGG - chr3.3:6040487-6040506 None:intergenic 35.0%
! TCCAAAGGATGTTTTCTTTG+GGG - chr3.3:6039198-6039217 None:intergenic 35.0%
! TCTTGATTTGATTACCATGC+AGG + chr3.3:6040184-6040203 MS.gene51989:intron 35.0%
!! TGATCATTGTCTTGGTAATG+TGG - chr3.3:6039678-6039697 None:intergenic 35.0%
!! TGCAAAACAAGATAACGGAA+AGG + chr3.3:6037638-6037657 MS.gene51989:CDS 35.0%
!! TTTTGGTTAAATCCAGGAGT+TGG - chr3.3:6040367-6040386 None:intergenic 35.0%
!!! GAATTTATTTTGCAAGCTCC+TGG - chr3.3:6039424-6039443 None:intergenic 35.0%
!!! TCATGTGGTTTTTTGTATGG+TGG - chr3.3:6039309-6039328 None:intergenic 35.0%
!!! TGCATGTTTTGGTTAAATCC+AGG - chr3.3:6040373-6040392 None:intergenic 35.0%
AACATGATTCCTACTCCTTC+TGG + chr3.3:6040268-6040287 MS.gene51989:CDS 40.0%
AACCTCCATGATCATTGTCT+TGG - chr3.3:6039686-6039705 None:intergenic 40.0%
AAGAGAAAGGCTGACCAAAT+AGG + chr3.3:6039747-6039766 MS.gene51989:CDS 40.0%
ACCCCAAAGAAAACATCCTT+TGG + chr3.3:6039194-6039213 MS.gene51989:CDS 40.0%
CAATTCCAAATGGTTGGAGT+TGG + chr3.3:6039789-6039808 MS.gene51989:CDS 40.0%
CAGGTACATGTTAAAGATGG+TGG + chr3.3:6038894-6038913 MS.gene51989:intron 40.0%
CCCTCATCACATGATGATAA+AGG - chr3.3:6039618-6039637 None:intergenic 40.0%
GACAATGGCAAACCAATGAT+TGG + chr3.3:6038958-6038977 MS.gene51989:CDS 40.0%
GGAAAGGAAAAAGAAGAAGG+TGG + chr3.3:6037654-6037673 MS.gene51989:CDS 40.0%
GGACAGGTACATGTTAAAGA+TGG + chr3.3:6038891-6038910 MS.gene51989:intron 40.0%
GGATCAGTTTCAACAGTGAA+TGG + chr3.3:6039072-6039091 MS.gene51989:CDS 40.0%
TACCAAGACAATGATCATGG+AGG + chr3.3:6039681-6039700 MS.gene51989:CDS 40.0%
TGTATCAGGTAGGTCATACA+AGG - chr3.3:6039130-6039149 None:intergenic 40.0%
! ATGCATCCCAACGTTGATAA+CGG + chr3.3:6037603-6037622 MS.gene51989:CDS 40.0%
! CAAACCAATGATTGGCTCTT+CGG + chr3.3:6038966-6038985 MS.gene51989:CDS 40.0%
! CAACTCCAACCATTTGGAAT+TGG - chr3.3:6039791-6039810 None:intergenic 40.0%
! GAATCATGGTGGAAGGAAAT+GGG + chr3.3:6039255-6039274 MS.gene51989:CDS 40.0%
! GTGATCTGATTTGCAACAGA+AGG - chr3.3:6039873-6039892 None:intergenic 40.0%
! GTGGAATTTTGTGATGTTCG+TGG + chr3.3:6038913-6038932 MS.gene51989:CDS 40.0%
! TGTTGCTTGATGAGCAAGTA+AGG + chr3.3:6039097-6039116 MS.gene51989:CDS 40.0%
! TTTTCCGAAGAGCCAATCAT+TGG - chr3.3:6038973-6038992 None:intergenic 40.0%
!! AAAGGATGTTTTCTTTGGGG+TGG - chr3.3:6039195-6039214 None:intergenic 40.0%
!! CGAATCCTTTTGATAGCATG+GGG + chr3.3:6037964-6037983 MS.gene51989:intron 40.0%
!! GCGAATCCTTTTGATAGCAT+GGG + chr3.3:6037963-6037982 MS.gene51989:intron 40.0%
!! GGAGTATTGTTAGACATTCC+AGG + chr3.3:6039403-6039422 MS.gene51989:CDS 40.0%
!! GTTGGAATCATGTTGGTAAC+TGG - chr3.3:6040349-6040368 None:intergenic 40.0%
!! TAGGGGTGCTAATAAGAGAA+AGG + chr3.3:6039734-6039753 MS.gene51989:CDS 40.0%
!!! GTGGTTTTTTGTATGGTGGT+GGG - chr3.3:6039305-6039324 None:intergenic 40.0%
!!! TGTGGTTTTTTGTATGGTGG+TGG - chr3.3:6039306-6039325 None:intergenic 40.0%
ACAGTACATGTCAGCTCAAC+GGG - chr3.3:6038871-6038890 None:intergenic 45.0%
ACCAACATGATTCCAACTCC+TGG + chr3.3:6040352-6040371 MS.gene51989:CDS 45.0%
ACCAACCGAGCTACTTATGT+AGG + chr3.3:6040085-6040104 MS.gene51989:intron 45.0%
AGAAAGGCTGACCAAATAGG+AGG + chr3.3:6039750-6039769 MS.gene51989:CDS 45.0%
AGCTTCCAACTCCAACCATT+TGG - chr3.3:6039797-6039816 None:intergenic 45.0%
ATGAATCATGTTGTGCCAGC+TGG + chr3.3:6040244-6040263 MS.gene51989:CDS 45.0%
CACAGTACATGTCAGCTCAA+CGG - chr3.3:6038872-6038891 None:intergenic 45.0%
CCAAAACATGCAGCCTCAAA+TGG + chr3.3:6040381-6040400 MS.gene51989:CDS 45.0%
GCATATCGAAGTCTCCATGT+TGG - chr3.3:6039649-6039668 None:intergenic 45.0%
GGTAGGTCATACAAGGAGTA+AGG - chr3.3:6039123-6039142 None:intergenic 45.0%
GTGAACTAGGGTAAACTTGC+AGG + chr3.3:6038573-6038592 MS.gene51989:intron 45.0%
TACCATGCAGGTAATGACTC+AGG + chr3.3:6040196-6040215 MS.gene51989:intron 45.0%
TCATATTTGGCGATTGCAGC+TGG - chr3.3:6039042-6039061 None:intergenic 45.0%
TCCAGGAGTTGGAATCATGT+TGG - chr3.3:6040356-6040375 None:intergenic 45.0%
TCCTACATAAGTAGCTCGGT+TGG - chr3.3:6040089-6040108 None:intergenic 45.0%
TGCTACCCCATGCTATCAAA+AGG - chr3.3:6037972-6037991 None:intergenic 45.0%
TGGTAATCACCAGAAGGAGT+AGG - chr3.3:6040280-6040299 None:intergenic 45.0%
! CGAATCATGGTGGAAGGAAA+TGG + chr3.3:6039254-6039273 MS.gene51989:CDS 45.0%
! GTGCACAAGAGGGCATATTA+AGG + chr3.3:6037817-6037836 MS.gene51989:CDS 45.0%
! TGAGGGTTCTGATACCAACA+TGG + chr3.3:6039632-6039651 MS.gene51989:CDS 45.0%
! TGTTGCTGCTTCCTCCTATT+TGG - chr3.3:6039764-6039783 None:intergenic 45.0%
! TTGATAGCATGGGGTAGCAT+TGG + chr3.3:6037973-6037992 MS.gene51989:intron 45.0%
!! CCATTTGAGGCTGCATGTTT+TGG - chr3.3:6040384-6040403 None:intergenic 45.0%
!! GAAGCACCGTTATCAACGTT+GGG - chr3.3:6037612-6037631 None:intergenic 45.0%
!! GGCGAATCCTTTTGATAGCA+TGG + chr3.3:6037962-6037981 MS.gene51989:intron 45.0%
!! TGAAGCACCGTTATCAACGT+TGG - chr3.3:6037613-6037632 None:intergenic 45.0%
!!! TTTTGTATGGTGGTGGGAGT+GGG - chr3.3:6039299-6039318 None:intergenic 45.0%
!!! TTTTTGTATGGTGGTGGGAG+TGG - chr3.3:6039300-6039319 None:intergenic 45.0%
ACAATGGCTCGTGCACAAGA+GGG + chr3.3:6037807-6037826 MS.gene51989:CDS 50.0%
AGCTGACATGTACTGTGGAC+AGG + chr3.3:6038875-6038894 MS.gene51989:intron 50.0%
CAACAGGGAACGAATCATGG+TGG + chr3.3:6039244-6039263 MS.gene51989:CDS 50.0%
CACCATGATTCGTTCCCTGT+TGG - chr3.3:6039246-6039265 None:intergenic 50.0%
CAGTACATGTCAGCTCAACG+GGG - chr3.3:6038870-6038889 None:intergenic 50.0%
CGTTGAGCTGACATGTACTG+TGG + chr3.3:6038870-6038889 MS.gene51989:intron 50.0%
CTCCTGAGTCATTACCTGCA+TGG - chr3.3:6040201-6040220 None:intergenic 50.0%
CTTCGGAAAATCTACGCGGT+TGG + chr3.3:6038983-6039002 MS.gene51989:CDS 50.0%
GATGTTCGTGGCTTCGTCTA+TGG + chr3.3:6038925-6038944 MS.gene51989:CDS 50.0%
GCAGGTAATGACTCAGGAGA+AGG + chr3.3:6040202-6040221 MS.gene51989:intron 50.0%
GCTTGCTCATGTTGGTCAAG+AGG - chr3.3:6039843-6039862 None:intergenic 50.0%
GGCTCTTCGGAAAATCTACG+CGG + chr3.3:6038979-6038998 MS.gene51989:CDS 50.0%
GTAGGAATCATGTTGCCAGC+TGG - chr3.3:6040262-6040281 None:intergenic 50.0%
! AATTTCTCTAGCTTCGCCGC+TGG + chr3.3:6038450-6038469 MS.gene51989:intron 50.0%
! AGGGAACGAATCATGGTGGA+AGG + chr3.3:6039248-6039267 MS.gene51989:CDS 50.0%
! GTACTGCAGCTTGCTCATGT+TGG - chr3.3:6039851-6039870 None:intergenic 50.0%
!! AAATCTACGCGGTTGGTGGA+AGG + chr3.3:6038990-6039009 MS.gene51989:CDS 50.0%
AAAGCGGCATTCCTCCACCA+TGG + chr3.3:6039217-6039236 MS.gene51989:CDS 55.0%
CGGAAAATCTACGCGGTTGG+TGG + chr3.3:6038986-6039005 MS.gene51989:CDS 55.0%
GACAATGGCTCGTGCACAAG+AGG + chr3.3:6037806-6037825 MS.gene51989:CDS 55.0%
GGCCAACAGGGAACGAATCA+TGG + chr3.3:6039241-6039260 MS.gene51989:CDS 55.0%
!! GGAGGAATGCCGCTTTCCAA+AGG - chr3.3:6039213-6039232 None:intergenic 55.0%
CTCCACCATGGTGGCCAACA+GGG + chr3.3:6039229-6039248 MS.gene51989:CDS 60.0%
TCGTTCCCTGTTGGCCACCA+TGG - chr3.3:6039237-6039256 None:intergenic 60.0%
TTCCCTGTTGGCCACCATGG+TGG - chr3.3:6039234-6039253 None:intergenic 60.0%
CCTCCACCATGGTGGCCAAC+AGG + chr3.3:6039228-6039247 MS.gene51989:CDS 65.0%
CCTGTTGGCCACCATGGTGG+AGG - chr3.3:6039231-6039250 None:intergenic 65.0%
GCGGCATTCCTCCACCATGG+TGG + chr3.3:6039220-6039239 MS.gene51989:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 6037603 6040648 6037603 ID=MS.gene51989
chr3.3 mRNA 6037603 6040648 6037603 ID=MS.gene51989.t1;Parent=MS.gene51989
chr3.3 exon 6037603 6037838 6037603 ID=MS.gene51989.t1.exon1;Parent=MS.gene51989.t1
chr3.3 CDS 6037603 6037838 6037603 ID=cds.MS.gene51989.t1;Parent=MS.gene51989.t1
chr3.3 exon 6038897 6039903 6038897 ID=MS.gene51989.t1.exon2;Parent=MS.gene51989.t1
chr3.3 CDS 6038897 6039903 6038897 ID=cds.MS.gene51989.t1;Parent=MS.gene51989.t1
chr3.3 exon 6040206 6040648 6040206 ID=MS.gene51989.t1.exon3;Parent=MS.gene51989.t1
chr3.3 CDS 6040206 6040648 6040206 ID=cds.MS.gene51989.t1;Parent=MS.gene51989.t1
Gene Sequence

>MS.gene51989

ATGCATCCCAACGTTGATAACGGTGCTTCAAACAATGCAAAACAAGATAACGGAAAGGAAAAAGAAGAAGGTGGTGAAAACATAGATATGACTATTGAGGAACTAGAGACAAAGATATGGAAAGATAAAATGCTCTTAAAGAAGATGAAGTTAAAAAGAATTCAAAGTGACAATAAAACATCACTGGAACAATTGAAAAGAAAGACAATGGCTCGTGCACAAGAGGGCATATTAAGGTAGTTCTTTTTTTAATTGAAAAAGAGAAAAATTATTATTAATAAAAGTGACATTAAATTTTGCTCAAAAAAAAAAGTGACATTAATTATTATTTTACAACCGTTTTAAAGAATATTTTCAGGGGCGAATCCTTTTGATAGCATGGGGTAGCATTGGCTACCCCAAAATTTTTATTTCTATTGAACCATTAGGTATATTAATATGGCTAGCTACCCCAATAATATATTTTTAGTTACCTCAAACAAATTTATTTGCAAAAAATTAGCATAAATTAAAAGGTTAAAAAATTATTACTTGATTAATAAACTTATTTGTCTTATTTTGATATTTCAGTGTCTACAACAACAATAGAGAAATCATTTTTAACAATAAAAATTATCAATAGTCAAACATAATAGAGGATAGTTTAATGCAAATAGCTTATTTGTCTACGTTGAAAAAGAAATTATTAGTCTATTTAGAAAATATTCAATTATGAATATATTTGACTTCTCGAAGCCTAATTTTATAAAGATTAAACATATTTATCCTTTAAATTTAATATATAATATTTTAAAATATATAATTTTTCTTTACCTAAAAAAATATTTGTATTTGGACCCCTTGTAAAAATTTCTCTAGCTTCGCCGCTGGATATTTTAATTCTATCTCTTGAGGTAAATTGCTAAAATCGCAAGTTAAAGTCCAGGGATCATTTTCAAGTTTAATTGGCTATAAACTCATATTTTAGTTAGTGAACTAGGGTAAACTTGCAGGAAATCTTCAATAGAATTTTTATCTTTTTTTTCATCTTTTCATCTTAGTTTATCAGATTCGATTTCTTTTTTTCTTTGTTCATGTATTTTTTTTTTTAGTTTTTTAATTGTATCATATAGTATACATGTCTTGTATATAGCCATAATTTTAATATGAAGTAAATTGCATGAGTTTATAAGTCATGTTTATGAATTGATTTCATATAGACAACAATTTTGCTTAAATTCCCAATTTTGAGAACTTTGACTTGAGATAAACAAAGTCAAATTCTCCCCGTTGAGCTGACATGTACTGTGGACAGGTACATGTTAAAGATGGTGGAATTTTGTGATGTTCGTGGCTTCGTCTATGGAGTAGTACTTGACAATGGCAAACCAATGATTGGCTCTTCGGAAAATCTACGCGGTTGGTGGAAGGACAAAGTAAACTTTGAGGAAAACGGTCCAGCTGCAATCGCCAAATATGAAGAACAATGTGGATCAGTTTCAACAGTGAATGGCATGTTGCTTGATGAGCAAGTAAGGCCTTACTCCTTGTATGACCTACCTGATACAATATTAGGTTCAATTGTATCATCATTAATGCAACACTGCGATCCACCCCAAAGAAAACATCCTTTGGAAAGCGGCATTCCTCCACCATGGTGGCCAACAGGGAACGAATCATGGTGGAAGGAAATGGGATTTAGTAAGGATCTTGTCCCACTCCCACCACCATACAAAAAACCACATGATTTGAAGAAGGTTTGGAAAATTTGTGTGTTGACGGCTATTATCAAACACATATCTCCTAATTTTCAGAAGATCAGGAGTATTGTTAGACATTCCAGGAGCTTGCAAAATAAATTCAATGCTAAGGATACAGCTATTTGGTTAGCTGTTATTAGTTATGAAGAAAGATTGGCAAGAGAAATGTATCCTGAATCATTCTTAAATTCTTCTTGTGTTGGTGAAAGTAGTTATGAGTTTGTGGAAACAGATGATTATGATGTGGAATGTGATGAGCACAATCTAGCAAAACCTTTATCATCATGTGATGAGGGTTCTGATACCAACATGGAGACTTCGATATGCATTGATCCACATTACCAAGACAATGATCATGGAGGTTCTTCAATGAACAATCTTGTTATTGAGAGTAGGGGTGCTAATAAGAGAAAGGCTGACCAAATAGGAGGAAGCAGCAACAACAACCAATTCCAAATGGTTGGAGTTGGAAGCTCAAAGAATCAACAACATGGTGCACCTCTTGACCAACATGAGCAAGCTGCAGTACCTTCTGTTGCAAATCAGATCACTATTCATGCAGGTAATCATGGTTATCAATATCTTGATTTGATACAAAACTAACTACTCAATCAATATGAATCTTTAGTCCCTATCTACATTTGTCATGCATCTTATCTTAAATCTTGATTTTTACTTAAAAACTAGTTTTTAGGGTTTCAATTATAGACTTTTTTTTAAAACTATATGATGTCTCTTAACTCACCAACCGAGCTACTTATGTAGGAAAAATGTCATCTTACAATTTATAATAAGATTTCGACTCACGCTTCAAAAACAAGTCTTCTGATCAACAATTTGAATCTTGATTTGATTACCATGCAGGTAATGACTCAGGAGAAGGAGAAGATGTTTCTATTTGGATGAATCATGTTGTGCCAGCTGGCAACATGATTCCTACTCCTTCTGGTGATTACCAAAATTTTCAGCCTCAAATCTACACTTCAATGATGAATACTTCTTTGCCAGTTACCAACATGATTCCAACTCCTGGATTTAACCAAAACATGCAGCCTCAAATGGAGCAGAATTTCTATGATCAACAAGGGGATGCAAATAGCAATTACAACTACAAAGTGCCTAATGCTGAAGTCGTTAATGTTCCAATGCATGAAAATGTCTCAACAATGACAACCTTCGATTCATCTTTAGATGAGTTGATGGCATTCAATTCTCAATCTGATGTTGATGCTTATGCACTTATTGATTCTCCTAATGTGGCAACACAAAGTTATGATTTCTCTTGGCCAAACAATATTGGGAATTAA

Protein sequence

>MS.gene51989.t1

MHPNVDNGASNNAKQDNGKEKEEGGENIDMTIEELETKIWKDKMLLKKMKLKRIQSDNKTSLEQLKRKTMARAQEGILRYMLKMVEFCDVRGFVYGVVLDNGKPMIGSSENLRGWWKDKVNFEENGPAAIAKYEEQCGSVSTVNGMLLDEQVRPYSLYDLPDTILGSIVSSLMQHCDPPQRKHPLESGIPPPWWPTGNESWWKEMGFSKDLVPLPPPYKKPHDLKKVWKICVLTAIIKHISPNFQKIRSIVRHSRSLQNKFNAKDTAIWLAVISYEERLAREMYPESFLNSSCVGESSYEFVETDDYDVECDEHNLAKPLSSCDEGSDTNMETSICIDPHYQDNDHGGSSMNNLVIESRGANKRKADQIGGSSNNNQFQMVGVGSSKNQQHGAPLDQHEQAAVPSVANQITIHAGNDSGEGEDVSIWMNHVVPAGNMIPTPSGDYQNFQPQIYTSMMNTSLPVTNMIPTPGFNQNMQPQMEQNFYDQQGDANSNYNYKVPNAEVVNVPMHENVSTMTTFDSSLDELMAFNSQSDVDAYALIDSPNVATQSYDFSWPNNIGN