AlfalfaGEDB | MS.gene52092

M. sativa cultivar XinJiangDaYe / MS.gene52092

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52092.t1	XP_013456505.1	100	186	0	0	1	186	489	674	1.40E-100	375.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52092.t1	Q84MA9	68.8	186	53	1	1	186	472	652	5.0e-67	255.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52092.t1	A0A072UMB9	100.0	186	0	0	1	186	489	674	9.9e-101	375.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52092.t1	MTR_4g074080	100.000	186	0	0	1	186	489	674	6.77e-134	390
MS.gene52092.t1	MTR_5g075630	49.677	155	71	5	1	153	479	628	5.91e-35	129
MS.gene52092.t1	MTR_4g113100	47.619	168	81	5	1	165	468	631	4.98e-34	127
MS.gene52092.t1	MTR_3g102180	43.791	153	72	3	1	153	496	634	2.01e-33	125
MS.gene52092.t1	MTR_7g073710	45.963	161	74	5	2	157	459	611	3.21e-33	124
MS.gene52092.t1	MTR_3g093710	45.963	161	68	7	1	153	466	615	4.40e-33	124
MS.gene52092.t1	MTR_5g068210	44.375	160	71	5	3	153	438	588	1.05e-32	123
MS.gene52092.t1	MTR_3g062500	46.104	154	78	3	1	153	478	627	1.32e-32	123
MS.gene52092.t1	MTR_3g062500	46.104	154	78	3	1	153	488	637	1.41e-32	123
MS.gene52092.t1	MTR_4g094885	45.098	153	69	4	1	153	483	620	4.34e-32	121

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52092.t1	AT1G10850	75.269	186	45	1	1	186	479	663	2.72e-90	277
MS.gene52092.t1	AT1G60630	68.817	186	53	1	1	186	472	652	4.92e-81	253
MS.gene52092.t1	AT2G26730	47.712	153	75	3	1	152	471	619	2.49e-33	125
MS.gene52092.t1	AT5G58300	43.373	166	89	3	1	165	481	642	3.61e-32	122
MS.gene52092.t1	AT5G58300	43.373	166	89	3	1	165	481	642	3.61e-32	122
MS.gene52092.t1	AT5G58300	43.373	166	89	3	1	165	481	642	3.61e-32	122
MS.gene52092.t1	AT5G67200	43.137	153	75	2	1	153	517	657	3.59e-31	119
MS.gene52092.t1	AT3G50230	42.945	163	76	6	3	162	508	656	2.21e-30	116
MS.gene52092.t1	AT3G50230	42.945	163	76	6	3	162	520	668	2.46e-30	116
MS.gene52092.t1	AT5G16590	40.805	174	88	5	2	173	465	625	5.36e-30	115

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Find 50 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTTCCAATGTGTTACT+TGG	0.466979	4.1:-29787450	MS.gene52092:CDS
AAGATGATAAGAGATGCAAG+AGG	0.685553	4.1:-29787030	MS.gene52092:CDS
AATAGTAGTGATCATTCACC+TGG	0.623861	4.1:-29786985	MS.gene52092:CDS
ACATCGGCAGGTTGAGTTTG+TGG	0.422305	4.1:+29787303	None:intergenic
ACCCTATCAAGACCTTGTAC+AGG	0.599837	4.1:-29787235	MS.gene52092:CDS
ACGGTTCAGATATACCTAGA+TGG	0.494250	4.1:-29787209	MS.gene52092:CDS
ACTGTATCTGACCATCTACC+AGG	0.567765	4.1:+29786967	None:intergenic
ACTTGGTTCCTCCATTGTGT+CGG	0.473608	4.1:+29787374	None:intergenic
AGATGCTTCATTGCCTGACG+AGG	0.560016	4.1:+29787140	None:intergenic
AGCATCTGAAGAGAAGCTTC+AGG	0.442726	4.1:-29787124	MS.gene52092:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCTCTATAGAAAAAAGAAG+TGG	+	chr4.1:29787051-29787070	None:intergenic	30.0%
AAGATGATAAGAGATGCAAG+AGG	-	chr4.1:29787368-29787387	MS.gene52092:CDS	35.0%
AATAGTAGTGATCATTCACC+TGG	-	chr4.1:29787413-29787432	MS.gene52092:CDS	35.0%
GTAACACATTGGAAGATTTC+AGG	+	chr4.1:29786947-29786966	None:intergenic	35.0%
TAGAAAAAAGAAGTGGCACT+TGG	+	chr4.1:29787044-29787063	None:intergenic	35.0%
ACGGTTCAGATATACCTAGA+TGG	-	chr4.1:29787189-29787208	MS.gene52092:CDS	40.0%
ATGCTAAGATGTTCATCCCT+CGG	+	chr4.1:29787467-29787486	None:intergenic	40.0%
CGGTTCAGATATACCTAGAT+GGG	-	chr4.1:29787190-29787209	MS.gene52092:CDS	40.0%
GACACCAAAGCTGTATACAT+CGG	+	chr4.1:29787114-29787133	None:intergenic	40.0%
GGCTCTATTGAACATTGCAA+TGG	-	chr4.1:29787295-29787314	MS.gene52092:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	29786930	29787490	29786930	ID=MS.gene52092
chr4.1	mRNA	29786930	29787490	29786930	ID=MS.gene52092.t1;Parent=MS.gene52092
chr4.1	exon	29786930	29787490	29786930	ID=MS.gene52092.t1.exon1;Parent=MS.gene52092.t1
chr4.1	CDS	29786930	29787490	29786930	ID=cds.MS.gene52092.t1;Parent=MS.gene52092.t1

Gene Sequence

>MS.gene52092

ATGGCTCACGGAAACCTGAAATCTTCCAATGTGTTACTTGGTGCCGACTTTGAGTCCTGTCTCACTGACTATGGTCTCACTGTGTTCCTTAATCCCGACACAATGGAGGAACCAAGTGCCACTTCTTTTTTCTATAGAGCACCCGAGTGCCGCAGTTTTCAACGGCCACAAACTCAACCTGCCGATGTATACAGCTTTGGTGTCCTTCTCCTCGAGCTTTTGACTGGCAAAACACCCTATCAAGACCTTGTACAGGCACACGGTTCAGATATACCTAGATGGGTTCGATCGGTACGTGAAGAAGAGACCGAGTCTGGGGATGACCCTGCCTCGTCAGGCAATGAAGCATCTGAAGAGAAGCTTCAGGCTCTATTGAACATTGCAATGGCATGTGTTTCAGTAGTGCCGGAGAATAGGCCTACAATGAGAGAAGTTCTAAAGATGATAAGAGATGCAAGAGGAGAAGCTCATGTCTCATCTAATAATAGTAGTGATCATTCACCTGGTAGATGGTCAGATACAGTTCAAAGCTTGCCGAGGGATGAACATCTTAGCATATAA

Protein sequence

>MS.gene52092.t1

MAHGNLKSSNVLLGADFESCLTDYGLTVFLNPDTMEEPSATSFFYRAPECRSFQRPQTQPADVYSFGVLLLELLTGKTPYQDLVQAHGSDIPRWVRSVREEETESGDDPASSGNEASEEKLQALLNIAMACVSVVPENRPTMREVLKMIRDARGEAHVSSNNSSDHSPGRWSDTVQSLPRDEHLSI