Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52210.t1 | XP_003623892.1 | 99.4 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 2.20E-86 | 328.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52210.t1 | Q1ECF5 | 72.4 | 174 | 46 | 1 | 1 | 174 | 1 | 172 | 1.8e-73 | 276.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52210.t1 | G7L3J0 | 99.4 | 174 | 1 | 0 | 1 | 174 | 1 | 174 | 1.6e-86 | 328.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene52210.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52210.t1 | MTR_7g076720 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 1.36e-155 | 429 |
| MS.gene52210.t1 | MTR_8g031490 | 77.295 | 207 | 36 | 4 | 1 | 199 | 1 | 204 | 1.10e-110 | 315 |
| MS.gene52210.t1 | MTR_3g070050 | 61.053 | 190 | 70 | 2 | 1 | 186 | 1 | 190 | 6.13e-86 | 252 |
| MS.gene52210.t1 | MTR_8g097300 | 52.830 | 212 | 96 | 2 | 1 | 212 | 1 | 208 | 1.17e-73 | 222 |
| MS.gene52210.t1 | MTR_3g070050 | 59.864 | 147 | 55 | 2 | 44 | 186 | 2 | 148 | 1.37e-62 | 191 |
| MS.gene52210.t1 | MTR_3g070050 | 44.444 | 81 | 45 | 0 | 3 | 83 | 61 | 141 | 1.74e-19 | 81.6 |
| MS.gene52210.t1 | MTR_1g017950 | 50.857 | 175 | 82 | 2 | 1 | 171 | 1 | 175 | 1.81e-60 | 188 |
| MS.gene52210.t1 | MTR_4g106800 | 47.977 | 173 | 83 | 2 | 2 | 169 | 3 | 173 | 3.81e-56 | 176 |
| MS.gene52210.t1 | MTR_4g106800 | 43.056 | 72 | 41 | 0 | 3 | 74 | 103 | 174 | 7.37e-15 | 70.1 |
| MS.gene52210.t1 | MTR_3g070033 | 55.882 | 68 | 30 | 0 | 119 | 186 | 6 | 73 | 1.69e-25 | 94.7 |
| MS.gene52210.t1 | MTR_3g070033 | 45.161 | 62 | 34 | 0 | 22 | 83 | 5 | 66 | 1.18e-13 | 63.9 |
| MS.gene52210.t1 | MTR_1g106100 | 37.037 | 108 | 64 | 2 | 59 | 164 | 20 | 125 | 1.92e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52210.t1 | AT2G45800 | 70.192 | 208 | 62 | 0 | 1 | 208 | 1 | 208 | 3.87e-106 | 305 |
| MS.gene52210.t1 | AT1G01780 | 71.144 | 201 | 53 | 2 | 1 | 198 | 1 | 199 | 5.74e-106 | 303 |
| MS.gene52210.t1 | AT3G61230 | 69.811 | 212 | 59 | 3 | 2 | 209 | 3 | 213 | 1.75e-104 | 300 |
| MS.gene52210.t1 | AT2G39900 | 64.286 | 182 | 62 | 1 | 1 | 179 | 1 | 182 | 4.03e-90 | 263 |
| MS.gene52210.t1 | AT3G55770 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.40e-89 | 261 |
| MS.gene52210.t1 | AT3G55770 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.40e-89 | 261 |
| MS.gene52210.t1 | AT3G55770 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.40e-89 | 261 |
| MS.gene52210.t1 | AT3G55770 | 64.286 | 182 | 63 | 1 | 1 | 180 | 1 | 182 | 3.40e-89 | 261 |
| MS.gene52210.t1 | AT3G55770 | 54.167 | 216 | 63 | 2 | 1 | 180 | 1 | 216 | 3.21e-81 | 242 |
| MS.gene52210.t1 | AT2G45800 | 66.258 | 163 | 55 | 0 | 46 | 208 | 15 | 177 | 4.99e-75 | 225 |
| MS.gene52210.t1 | AT2G45800 | 50.617 | 81 | 40 | 0 | 3 | 83 | 68 | 148 | 3.70e-22 | 89.7 |
| MS.gene52210.t1 | AT1G10200 | 50.276 | 181 | 86 | 2 | 1 | 177 | 1 | 181 | 2.09e-61 | 190 |
| MS.gene52210.t1 | AT3G55770 | 67.769 | 121 | 37 | 1 | 1 | 119 | 1 | 121 | 2.67e-56 | 175 |
| MS.gene52210.t1 | AT3G55770 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 5.82e-23 | 90.5 |
| MS.gene52210.t1 | AT3G55770 | 63.780 | 127 | 42 | 2 | 1 | 123 | 1 | 127 | 1.97e-53 | 168 |
| MS.gene52210.t1 | AT3G55770 | 47.674 | 86 | 45 | 0 | 99 | 184 | 3 | 88 | 3.21e-23 | 90.9 |
| MS.gene52210.t1 | AT1G10200 | 47.059 | 136 | 68 | 2 | 46 | 177 | 4 | 139 | 3.81e-40 | 134 |
| MS.gene52210.t1 | AT1G10200 | 50.000 | 72 | 36 | 0 | 3 | 74 | 61 | 132 | 1.21e-17 | 76.6 |
Find 44 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGAAAAGTTGTTCAAAA+TGG | 0.152912 | 7.4:-28960814 | None:intergenic |
| GCCTGTTCCTCAGTTTCTTC+TGG | 0.236294 | 7.4:-28962040 | None:intergenic |
| CTTGAAAAGTTGTTCAAAAT+GGG | 0.287191 | 7.4:-28960813 | None:intergenic |
| TCATCCTCATCAGCTGGTTC+AGG | 0.337166 | 7.4:-28962007 | None:intergenic |
| TGAGAAGATAAATGAGTTGA+TGG | 0.377988 | 7.4:+28961035 | MS.gene52210:CDS |
| TCTTCCTATGCTGCACTAGA+TGG | 0.380773 | 7.4:+28961881 | MS.gene52210:CDS |
| CAAAATGGGGCTTGCAATAG+AGG | 0.393896 | 7.4:-28960799 | None:intergenic |
| ACCAGAAGAAACTGAGGAAC+AGG | 0.395424 | 7.4:+28962039 | MS.gene52210:CDS |
| GTTACCACAAGACTTGCTTT+AGG | 0.406861 | 7.4:+28961828 | MS.gene52210:CDS |
| TCATCAGCTGGTTCAGGTGG+TGG | 0.409594 | 7.4:-28962001 | None:intergenic |
| AACTGTTTATCCTTTGGAAA+AGG | 0.417247 | 7.4:+28961381 | MS.gene52210:CDS |
| GATGCCTCATCCTCATCAGC+TGG | 0.427885 | 7.4:-28962013 | None:intergenic |
| GAAAATGATGCTTGCAATAG+AGG | 0.440602 | 7.4:-28961907 | None:intergenic |
| GTTGATTTGTTAACTCTTGA+AGG | 0.447636 | 7.4:+28960204 | MS.gene52210:CDS |
| AATTTCAGCAAGAACTTTCA+AGG | 0.447985 | 7.4:+28960845 | MS.gene52210:CDS |
| GAACATAGAGGAAAGTCTAC+TGG | 0.452881 | 7.4:-28961323 | None:intergenic |
| CTTTGTGAAATAGATGTCAT+TGG | 0.477228 | 7.4:+28961796 | MS.gene52210:intron |
| ACTTGCTTTAGGTGTGCTCA+TGG | 0.497010 | 7.4:+28961839 | MS.gene52210:CDS |
| GATGAGTACTTACTCGTCAA+TGG | 0.501960 | 7.4:+28960769 | MS.gene52210:intron |
| CTTAAAATGCACTCACTGCA+AGG | 0.503886 | 7.4:+28960248 | MS.gene52210:CDS |
| TCCTCATCAGCTGGTTCAGG+TGG | 0.506548 | 7.4:-28962004 | None:intergenic |
| GAAATAGATGTCATTGGAAG+GGG | 0.521645 | 7.4:+28961802 | MS.gene52210:intron |
| GACACCATCTAGTGCAGCAT+AGG | 0.529057 | 7.4:-28961885 | None:intergenic |
| CAGCATAGGAAGAATGTGTA+AGG | 0.533785 | 7.4:-28961871 | None:intergenic |
| GTGAAATAGATGTCATTGGA+AGG | 0.534845 | 7.4:+28961800 | MS.gene52210:intron |
| TGAAATAGATGTCATTGGAA+GGG | 0.539587 | 7.4:+28961801 | MS.gene52210:intron |
| TTGAAAAGTTGTTCAAAATG+GGG | 0.540325 | 7.4:-28960812 | None:intergenic |
| AACAACAAAATGTCATTCAC+AGG | 0.544997 | 7.4:+28960138 | None:intergenic |
| TCACTGCAAGGGAAATCTTA+CGG | 0.550486 | 7.4:+28960260 | MS.gene52210:CDS |
| AGCTGGTTCAGGTGGTGGAG+TGG | 0.554754 | 7.4:-28961996 | None:intergenic |
| TTGTGACAAGACTGTTTATG+TGG | 0.560240 | 7.4:+28960182 | MS.gene52210:CDS |
| ACCACCTGAACCAGCTGATG+AGG | 0.566047 | 7.4:+28962003 | MS.gene52210:CDS |
| TGAACCAGCTGATGAGGATG+AGG | 0.566240 | 7.4:+28962009 | MS.gene52210:CDS |
| AACATAGAGGAAAGTCTACT+GGG | 0.579515 | 7.4:-28961322 | None:intergenic |
| AGACTTTCCTCTATGTTCAG+TGG | 0.586469 | 7.4:+28961328 | MS.gene52210:CDS |
| TAGAGTTCCACTGAACATAG+AGG | 0.599123 | 7.4:-28961335 | None:intergenic |
| TTAAAATGCACTCACTGCAA+GGG | 0.603835 | 7.4:+28960249 | MS.gene52210:CDS |
| AGTACTTACTCGTCAATGGA+TGG | 0.612038 | 7.4:+28960773 | MS.gene52210:CDS |
| TGCTTTAGGTGTGCTCATGG+AGG | 0.614156 | 7.4:+28961842 | MS.gene52210:CDS |
| AGGAACTCTTGATAAATGCA+AGG | 0.635782 | 7.4:+28960158 | MS.gene52210:CDS |
| ACAGGCAGAAGAAAAGTCTG+AGG | 0.636569 | 7.4:+28962057 | MS.gene52210:CDS |
| ATCAAAACCAGAAGAAACTG+AGG | 0.663705 | 7.4:+28962033 | MS.gene52210:CDS |
| CATAGGAAGAATGTGTAAGG+TGG | 0.667933 | 7.4:-28961868 | None:intergenic |
| CACACCTAAAGCAAGTCTTG+TGG | 0.697099 | 7.4:-28961832 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTAGTTGAAATTTAAA+TGG | - | chr7.4:28961545-28961564 | None:intergenic | 10.0% |
| !! | TCATTACAAAAATTAAATTA+TGG | - | chr7.4:28960648-28960667 | None:intergenic | 10.0% |
| !!! | AAAATCATGATTTTTAATTT+TGG | - | chr7.4:28961227-28961246 | None:intergenic | 10.0% |
| !! | ATTTGATATAAAGTGAAATA+TGG | + | chr7.4:28960407-28960426 | MS.gene52210:intron | 15.0% |
| !!! | ACAGCAAATTTTTATATTAT+CGG | + | chr7.4:28961128-28961147 | MS.gene52210:intron | 15.0% |
| !! | AAAAATTAAATTATGGCACT+AGG | - | chr7.4:28960641-28960660 | None:intergenic | 20.0% |
| !! | CCTTAAAATACTTTATATTG+CGG | + | chr7.4:28961201-28961220 | MS.gene52210:intron | 20.0% |
| !!! | AAAATAGTAACACTTTGTTT+AGG | - | chr7.4:28961077-28961096 | None:intergenic | 20.0% |
| !!! | CATATGATATGTTATTTTCA+TGG | + | chr7.4:28960988-28961007 | MS.gene52210:intron | 20.0% |
| !!! | CTATTTTATTTTGGATAAAC+CGG | + | chr7.4:28960436-28960455 | MS.gene52210:intron | 20.0% |
| !!! | CTTTGTTTTCTACTTTTATT+CGG | + | chr7.4:28960907-28960926 | MS.gene52210:intron | 20.0% |
| !!! | TGGTTATGACTATTTTATTT+TGG | + | chr7.4:28960427-28960446 | MS.gene52210:intron | 20.0% |
| ! | AAAGTAAGTTTCTACTTTAG+AGG | - | chr7.4:28961472-28961491 | None:intergenic | 25.0% |
| ! | AAAGTAGACAAGAATACTTA+AGG | - | chr7.4:28961256-28961275 | None:intergenic | 25.0% |
| ! | ATATCCTTTATACACAAGTT+TGG | + | chr7.4:28960459-28960478 | MS.gene52210:intron | 25.0% |
| ! | CTTGAAAAGTTGTTCAAAAT+GGG | - | chr7.4:28960816-28960835 | None:intergenic | 25.0% |
| ! | TGAGTCATTATGATTGAATT+TGG | + | chr7.4:28960330-28960349 | MS.gene52210:intron | 25.0% |
| ! | TTGAAAAGTTGTTCAAAATG+GGG | - | chr7.4:28960815-28960834 | None:intergenic | 25.0% |
| !! | TGCATTTTAAGCAACTTTTA+TGG | - | chr7.4:28960239-28960258 | None:intergenic | 25.0% |
| !! | TTATTTTCATGGCTTAATTC+TGG | + | chr7.4:28960999-28961018 | MS.gene52210:intron | 25.0% |
| !! | TTTAAGCAACTTTTATGGTA+AGG | - | chr7.4:28960234-28960253 | None:intergenic | 25.0% |
| !!! | AAGTGTTACTATTTTGAACA+TGG | + | chr7.4:28961082-28961101 | MS.gene52210:intron | 25.0% |
| !!! | CCGCAATATAAAGTATTTTA+AGG | - | chr7.4:28961204-28961223 | None:intergenic | 25.0% |
| AATTTCAGCAAGAACTTTCA+AGG | + | chr7.4:28960845-28960864 | MS.gene52210:CDS | 30.0% | |
| ACTCGATTGAAAATAGTGTT+AGG | + | chr7.4:28961569-28961588 | MS.gene52210:intron | 30.0% | |
| ACTTGTGTATAAAGGATATC+CGG | - | chr7.4:28960458-28960477 | None:intergenic | 30.0% | |
| AGTAATCTCAACCATTCATA+AGG | + | chr7.4:28961505-28961524 | MS.gene52210:intron | 30.0% | |
| CACAAAAACTGTTTATCCTT+TGG | + | chr7.4:28961375-28961394 | MS.gene52210:CDS | 30.0% | |
| CCTTGAAAAGTTGTTCAAAA+TGG | - | chr7.4:28960817-28960836 | None:intergenic | 30.0% | |
| CTCGATTGAAAATAGTGTTA+GGG | + | chr7.4:28961570-28961589 | MS.gene52210:intron | 30.0% | |
| CTTTATACACAAGTTTGGTA+GGG | + | chr7.4:28960464-28960483 | MS.gene52210:intron | 30.0% | |
| CTTTGTGAAATAGATGTCAT+TGG | + | chr7.4:28961796-28961815 | MS.gene52210:intron | 30.0% | |
| TCTAAACTTGTGTCTAAGTT+GGG | + | chr7.4:28960728-28960747 | MS.gene52210:intron | 30.0% | |
| TGAAATAGATGTCATTGGAA+GGG | + | chr7.4:28961801-28961820 | MS.gene52210:intron | 30.0% | |
| ! | AACTGTTTATCCTTTGGAAA+AGG | + | chr7.4:28961381-28961400 | MS.gene52210:CDS | 30.0% |
| ! | ACATTTTAAATGTGGAGAAG+TGG | + | chr7.4:28961666-28961685 | MS.gene52210:intron | 30.0% |
| ! | ATATTACAGACCTTTTCCAA+AGG | - | chr7.4:28961394-28961413 | None:intergenic | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | + | chr7.4:28961668-28961687 | MS.gene52210:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | + | chr7.4:28961667-28961686 | MS.gene52210:intron | 30.0% |
| ! | CCATTTTGAACAACTTTTCA+AGG | + | chr7.4:28960814-28960833 | MS.gene52210:CDS | 30.0% |
| ! | GAACTCACACATTTTAAATG+TGG | + | chr7.4:28961658-28961677 | MS.gene52210:intron | 30.0% |
| ! | TAGTAACACTTTGTTTAGGT+TGG | - | chr7.4:28961073-28961092 | None:intergenic | 30.0% |
| ! | TCATTTTCAACAGCTTTTCA+TGG | + | chr7.4:28961922-28961941 | MS.gene52210:CDS | 30.0% |
| ! | TCGATTGATTTCCTTATGAA+TGG | - | chr7.4:28961519-28961538 | None:intergenic | 30.0% |
| ! | TGAGAAGATAAATGAGTTGA+TGG | + | chr7.4:28961035-28961054 | MS.gene52210:CDS | 30.0% |
| !! | ACTTGCACTTTGTATTGATT+TGG | + | chr7.4:28960961-28960980 | MS.gene52210:intron | 30.0% |
| !! | GTTGATTTGTTAACTCTTGA+AGG | + | chr7.4:28960204-28960223 | MS.gene52210:CDS | 30.0% |
| !!! | TCAACGCTCTTTATTTTTTG+TGG | + | chr7.4:28961616-28961635 | MS.gene52210:intron | 30.0% |
| AACATAGAGGAAAGTCTACT+GGG | - | chr7.4:28961325-28961344 | None:intergenic | 35.0% | |
| AAGTTGGGTTTCATGTATGT+TGG | + | chr7.4:28960743-28960762 | MS.gene52210:intron | 35.0% | |
| ACATTGCGTAATTTATGCAG+GGG | - | chr7.4:28961716-28961735 | None:intergenic | 35.0% | |
| AGGAACTCTTGATAAATGCA+AGG | + | chr7.4:28960158-28960177 | MS.gene52210:CDS | 35.0% | |
| ATCAAAACCAGAAGAAACTG+AGG | + | chr7.4:28962033-28962052 | MS.gene52210:CDS | 35.0% | |
| CCTACCAAACTTGTGTATAA+AGG | - | chr7.4:28960466-28960485 | None:intergenic | 35.0% | |
| CCTTTATACACAAGTTTGGT+AGG | + | chr7.4:28960463-28960482 | MS.gene52210:intron | 35.0% | |
| GAAAATGATGCTTGCAATAG+AGG | - | chr7.4:28961910-28961929 | None:intergenic | 35.0% | |
| GAAATAGATGTCATTGGAAG+GGG | + | chr7.4:28961802-28961821 | MS.gene52210:intron | 35.0% | |
| GACATTGCGTAATTTATGCA+GGG | - | chr7.4:28961717-28961736 | None:intergenic | 35.0% | |
| GTCTAAACTTGTGTCTAAGT+TGG | + | chr7.4:28960727-28960746 | MS.gene52210:intron | 35.0% | |
| GTGAAATAGATGTCATTGGA+AGG | + | chr7.4:28961800-28961819 | MS.gene52210:intron | 35.0% | |
| TGACATTGCGTAATTTATGC+AGG | - | chr7.4:28961718-28961737 | None:intergenic | 35.0% | |
| TTAAAATGCACTCACTGCAA+GGG | + | chr7.4:28960249-28960268 | MS.gene52210:CDS | 35.0% | |
| TTAACTTTGCTGCGTTCTTA+AGG | + | chr7.4:28960524-28960543 | MS.gene52210:intron | 35.0% | |
| TTGTGACAAGACTGTTTATG+TGG | + | chr7.4:28960182-28960201 | MS.gene52210:CDS | 35.0% | |
| TTGTTCTTCCTTTACAGAAC+AGG | + | chr7.4:28961296-28961315 | MS.gene52210:intron | 35.0% | |
| ! | TAAGGTTCGATTTGCACATA+GGG | + | chr7.4:28960542-28960561 | MS.gene52210:intron | 35.0% |
| ! | TTAAGGTTCGATTTGCACAT+AGG | + | chr7.4:28960541-28960560 | MS.gene52210:intron | 35.0% |
| !! | GAACAACTTTTCAAGGAATC+TGG | + | chr7.4:28960821-28960840 | MS.gene52210:CDS | 35.0% |
| !! | GTTATAAAGAGCGTTGATAG+CGG | - | chr7.4:28961756-28961775 | None:intergenic | 35.0% |
| !! | TAAAGAGCGTTGATAGTGAA+TGG | - | chr7.4:28961609-28961628 | None:intergenic | 35.0% |
| AGACTTTCCTCTATGTTCAG+TGG | + | chr7.4:28961328-28961347 | MS.gene52210:CDS | 40.0% | |
| AGTACTTACTCGTCAATGGA+TGG | + | chr7.4:28960773-28960792 | MS.gene52210:CDS | 40.0% | |
| AGTTTGGTAGGGTCATAGTA+TGG | + | chr7.4:28960475-28960494 | MS.gene52210:intron | 40.0% | |
| CAGCATAGGAAGAATGTGTA+AGG | - | chr7.4:28961874-28961893 | None:intergenic | 40.0% | |
| CATAGGAAGAATGTGTAAGG+TGG | - | chr7.4:28961871-28961890 | None:intergenic | 40.0% | |
| CTTAAAATGCACTCACTGCA+AGG | + | chr7.4:28960248-28960267 | MS.gene52210:CDS | 40.0% | |
| GAACATAGAGGAAAGTCTAC+TGG | - | chr7.4:28961326-28961345 | None:intergenic | 40.0% | |
| GATGAGTACTTACTCGTCAA+TGG | + | chr7.4:28960769-28960788 | MS.gene52210:intron | 40.0% | |
| TAGAGTTCCACTGAACATAG+AGG | - | chr7.4:28961338-28961357 | None:intergenic | 40.0% | |
| TCACTGCAAGGGAAATCTTA+CGG | + | chr7.4:28960260-28960279 | MS.gene52210:CDS | 40.0% | |
| ! | CAACAGCTTTTCATGGAGAA+AGG | + | chr7.4:28961929-28961948 | MS.gene52210:CDS | 40.0% |
| ! | GTTACCACAAGACTTGCTTT+AGG | + | chr7.4:28961828-28961847 | MS.gene52210:CDS | 40.0% |
| ACAGGCAGAAGAAAAGTCTG+AGG | + | chr7.4:28962057-28962076 | MS.gene52210:CDS | 45.0% | |
| ACCAGAAGAAACTGAGGAAC+AGG | + | chr7.4:28962039-28962058 | MS.gene52210:CDS | 45.0% | |
| ATGTGTGAGTTCCAGCAACT+AGG | - | chr7.4:28961650-28961669 | None:intergenic | 45.0% | |
| CAAAATGGGGCTTGCAATAG+AGG | - | chr7.4:28960802-28960821 | None:intergenic | 45.0% | |
| CACACCTAAAGCAAGTCTTG+TGG | - | chr7.4:28961835-28961854 | None:intergenic | 45.0% | |
| CGTAATTTATGCAGGGGCAA+GGG | - | chr7.4:28961710-28961729 | None:intergenic | 45.0% | |
| GTAATTTATGCAGGGGCAAG+GGG | - | chr7.4:28961709-28961728 | None:intergenic | 45.0% | |
| TCTTCCTATGCTGCACTAGA+TGG | + | chr7.4:28961881-28961900 | MS.gene52210:CDS | 45.0% | |
| ! | ACTTGCTTTAGGTGTGCTCA+TGG | + | chr7.4:28961839-28961858 | MS.gene52210:CDS | 45.0% |
| CAATGTCAGCTAAGCTCACG+GGG | + | chr7.4:28961730-28961749 | MS.gene52210:intron | 50.0% | |
| CGCAATGTCAGCTAAGCTCA+CGG | + | chr7.4:28961728-28961747 | MS.gene52210:intron | 50.0% | |
| CTGGGTGTCCTGTTCTGTAA+AGG | - | chr7.4:28961307-28961326 | None:intergenic | 50.0% | |
| GACACCATCTAGTGCAGCAT+AGG | - | chr7.4:28961888-28961907 | None:intergenic | 50.0% | |
| GCAATGTCAGCTAAGCTCAC+GGG | + | chr7.4:28961729-28961748 | MS.gene52210:intron | 50.0% | |
| GCCTGTTCCTCAGTTTCTTC+TGG | - | chr7.4:28962043-28962062 | None:intergenic | 50.0% | |
| GCGTAATTTATGCAGGGGCA+AGG | - | chr7.4:28961711-28961730 | None:intergenic | 50.0% | |
| TGAACCAGCTGATGAGGATG+AGG | + | chr7.4:28962009-28962028 | MS.gene52210:CDS | 50.0% | |
| TGGTCAAGTAGCCTAGTTGC+TGG | + | chr7.4:28961636-28961655 | MS.gene52210:intron | 50.0% | |
| ! | ATGTGGAGAAGTGGGGTGTT+AGG | + | chr7.4:28961675-28961694 | MS.gene52210:intron | 50.0% |
| ! | TCATCCTCATCAGCTGGTTC+AGG | - | chr7.4:28962010-28962029 | None:intergenic | 50.0% |
| ! | TGCTTTAGGTGTGCTCATGG+AGG | + | chr7.4:28961842-28961861 | MS.gene52210:CDS | 50.0% |
| ! | TGTGGAGAAGTGGGGTGTTA+GGG | + | chr7.4:28961676-28961695 | MS.gene52210:intron | 50.0% |
| ACCACCTGAACCAGCTGATG+AGG | + | chr7.4:28962003-28962022 | MS.gene52210:CDS | 55.0% | |
| CCACAACAACACCGCATCTG+CGG | - | chr7.4:28961178-28961197 | None:intergenic | 55.0% | |
| GATGCCTCATCCTCATCAGC+TGG | - | chr7.4:28962016-28962035 | None:intergenic | 55.0% | |
| TGCAGCCAAAACCGCAGATG+CGG | + | chr7.4:28961164-28961183 | MS.gene52210:intron | 55.0% | |
| ! | CAACACCGCATCTGCGGTTT+TGG | - | chr7.4:28961172-28961191 | None:intergenic | 55.0% |
| ! | GTGGAGAAGTGGGGTGTTAG+GGG | + | chr7.4:28961677-28961696 | MS.gene52210:intron | 55.0% |
| ! | TCATCAGCTGGTTCAGGTGG+TGG | - | chr7.4:28962004-28962023 | None:intergenic | 55.0% |
| ! | TCCTCATCAGCTGGTTCAGG+TGG | - | chr7.4:28962007-28962026 | None:intergenic | 55.0% |
| !! | AGCTGGTTCAGGTGGTGGAG+TGG | - | chr7.4:28961999-28962018 | None:intergenic | 60.0% |
| !! | CCGCAGATGCGGTGTTGTTG+TGG | + | chr7.4:28961175-28961194 | MS.gene52210:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 28960147 | 28962093 | 28960147 | ID=MS.gene52210 |
| chr7.4 | mRNA | 28960147 | 28962093 | 28960147 | ID=MS.gene52210.t1;Parent=MS.gene52210 |
| chr7.4 | exon | 28960147 | 28960281 | 28960147 | ID=MS.gene52210.t1.exon1;Parent=MS.gene52210.t1 |
| chr7.4 | CDS | 28960147 | 28960281 | 28960147 | ID=cds.MS.gene52210.t1;Parent=MS.gene52210.t1 |
| chr7.4 | exon | 28960770 | 28960866 | 28960770 | ID=MS.gene52210.t1.exon2;Parent=MS.gene52210.t1 |
| chr7.4 | CDS | 28960770 | 28960866 | 28960770 | ID=cds.MS.gene52210.t1;Parent=MS.gene52210.t1 |
| chr7.4 | exon | 28961025 | 28961056 | 28961025 | ID=MS.gene52210.t1.exon3;Parent=MS.gene52210.t1 |
| chr7.4 | CDS | 28961025 | 28961056 | 28961025 | ID=cds.MS.gene52210.t1;Parent=MS.gene52210.t1 |
| chr7.4 | exon | 28961313 | 28961402 | 28961313 | ID=MS.gene52210.t1.exon4;Parent=MS.gene52210.t1 |
| chr7.4 | CDS | 28961313 | 28961402 | 28961313 | ID=cds.MS.gene52210.t1;Parent=MS.gene52210.t1 |
| chr7.4 | exon | 28961809 | 28962093 | 28961809 | ID=MS.gene52210.t1.exon5;Parent=MS.gene52210.t1 |
| chr7.4 | CDS | 28961809 | 28962093 | 28961809 | ID=cds.MS.gene52210.t1;Parent=MS.gene52210.t1 |
| Gene Sequence |
| Protein sequence |
