Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52383.t1 | XP_024632961.1 | 84.7 | 793 | 93 | 4 | 1 | 765 | 1 | 793 | 0.00E+00 | 1343.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52383.t1 | Q9SZL8 | 27.0 | 636 | 394 | 11 | 32 | 665 | 70 | 637 | 3.3e-64 | 248.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52383.t1 | D3YBB9 | 76.9 | 774 | 159 | 4 | 1 | 764 | 49 | 812 | 0.0e+00 | 1192.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene52383.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52383.t1 | MTR_0558s0020 | 87.838 | 296 | 35 | 1 | 1 | 295 | 1 | 296 | 0.0 | 549 |
| MS.gene52383.t1 | MTR_1g083640 | 83.451 | 284 | 31 | 1 | 1 | 268 | 1 | 284 | 1.02e-172 | 498 |
| MS.gene52383.t1 | MTR_8g446020 | 73.898 | 295 | 38 | 1 | 1 | 295 | 1 | 256 | 4.96e-152 | 443 |
| MS.gene52383.t1 | MTR_2g014100 | 82.857 | 245 | 33 | 1 | 1 | 236 | 1 | 245 | 1.20e-142 | 419 |
| MS.gene52383.t1 | MTR_6g090505 | 83.966 | 237 | 38 | 0 | 65 | 301 | 1 | 237 | 2.02e-142 | 423 |
| MS.gene52383.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 396 | 495 | 230 | 306 | 4.12e-34 | 134 |
| MS.gene52383.t1 | MTR_6g090505 | 75.510 | 49 | 12 | 0 | 567 | 615 | 314 | 362 | 9.30e-11 | 64.7 |
| MS.gene52383.t1 | MTR_0337s0040 | 72.308 | 260 | 32 | 2 | 1 | 259 | 1 | 221 | 1.28e-123 | 369 |
| MS.gene52383.t1 | MTR_3g008240 | 84.729 | 203 | 30 | 1 | 1 | 202 | 1 | 203 | 2.09e-118 | 355 |
| MS.gene52383.t1 | MTR_4g040430 | 84.158 | 202 | 28 | 1 | 1 | 202 | 1 | 198 | 7.39e-118 | 353 |
| MS.gene52383.t1 | MTR_0337s0060 | 58.544 | 316 | 31 | 4 | 447 | 759 | 21 | 239 | 6.00e-108 | 329 |
| MS.gene52383.t1 | MTR_5g071590 | 73.889 | 180 | 34 | 2 | 1 | 167 | 1 | 180 | 6.25e-90 | 280 |
| MS.gene52383.t1 | MTR_1g055240 | 88.732 | 142 | 16 | 0 | 91 | 232 | 3 | 144 | 1.93e-87 | 273 |
| MS.gene52383.t1 | MTR_0019s0290 | 82.895 | 152 | 26 | 0 | 82 | 233 | 9 | 160 | 1.53e-86 | 270 |
| MS.gene52383.t1 | MTR_3g028680 | 80.795 | 151 | 26 | 1 | 618 | 765 | 1 | 151 | 1.61e-79 | 253 |
| MS.gene52383.t1 | MTR_2g067090 | 77.027 | 148 | 31 | 1 | 621 | 765 | 99 | 246 | 4.52e-70 | 232 |
| MS.gene52383.t1 | MTR_4g133495 | 60.204 | 196 | 50 | 4 | 576 | 768 | 88 | 258 | 2.53e-65 | 219 |
| MS.gene52383.t1 | MTR_4g133340 | 60.204 | 196 | 50 | 4 | 576 | 768 | 88 | 258 | 2.53e-65 | 219 |
| MS.gene52383.t1 | MTR_1281s0010 | 81.651 | 109 | 20 | 0 | 19 | 127 | 1 | 109 | 7.60e-57 | 189 |
| MS.gene52383.t1 | MTR_6g051425 | 32.075 | 318 | 185 | 6 | 40 | 341 | 22 | 324 | 3.63e-38 | 145 |
| MS.gene52383.t1 | MTR_4g008820 | 83.750 | 80 | 12 | 1 | 1 | 79 | 125 | 204 | 2.05e-31 | 131 |
| MS.gene52383.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 3.75e-31 | 122 |
| MS.gene52383.t1 | MTR_1g070355 | 26.852 | 324 | 216 | 6 | 41 | 362 | 80 | 384 | 5.84e-19 | 91.7 |
| MS.gene52383.t1 | MTR_2g067130 | 60.811 | 74 | 23 | 2 | 695 | 765 | 46 | 116 | 1.28e-17 | 81.3 |
| MS.gene52383.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 1.54e-14 | 77.4 |
| MS.gene52383.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.94e-13 | 66.6 |
| MS.gene52383.t1 | MTR_1g013060 | 29.545 | 220 | 134 | 8 | 40 | 256 | 29 | 230 | 9.46e-13 | 68.9 |
| MS.gene52383.t1 | MTR_4g035820 | 22.414 | 290 | 192 | 7 | 17 | 299 | 61 | 324 | 1.05e-12 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52383.t1 | AT4G38180 | 27.769 | 641 | 383 | 13 | 32 | 665 | 70 | 637 | 7.70e-71 | 248 |
| MS.gene52383.t1 | AT4G15090 | 25.260 | 673 | 422 | 14 | 50 | 718 | 66 | 661 | 1.13e-59 | 217 |
| MS.gene52383.t1 | AT4G15090 | 25.260 | 673 | 422 | 14 | 50 | 718 | 66 | 661 | 1.13e-59 | 217 |
| MS.gene52383.t1 | AT4G15090 | 25.260 | 673 | 422 | 14 | 50 | 718 | 66 | 661 | 1.13e-59 | 217 |
| MS.gene52383.t1 | AT4G15090 | 25.260 | 673 | 422 | 14 | 50 | 718 | 66 | 661 | 1.13e-59 | 217 |
| MS.gene52383.t1 | AT4G15090 | 25.260 | 673 | 422 | 14 | 50 | 718 | 66 | 661 | 1.13e-59 | 217 |
| MS.gene52383.t1 | AT2G27110 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 1.38e-53 | 199 |
| MS.gene52383.t1 | AT2G27110 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 1.38e-53 | 199 |
| MS.gene52383.t1 | AT2G27110 | 27.308 | 509 | 313 | 11 | 213 | 719 | 36 | 489 | 5.42e-53 | 196 |
| MS.gene52383.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 7.97e-52 | 193 |
| MS.gene52383.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 7.97e-52 | 193 |
| MS.gene52383.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 7.97e-52 | 193 |
| MS.gene52383.t1 | AT1G76320 | 24.296 | 675 | 419 | 17 | 50 | 720 | 12 | 598 | 1.52e-50 | 188 |
| MS.gene52383.t1 | AT1G76320 | 24.332 | 674 | 418 | 17 | 50 | 719 | 12 | 597 | 5.04e-50 | 188 |
| MS.gene52383.t1 | AT1G76320 | 24.332 | 674 | 418 | 17 | 50 | 719 | 12 | 597 | 5.04e-50 | 188 |
| MS.gene52383.t1 | AT1G76320 | 24.332 | 674 | 418 | 17 | 50 | 719 | 12 | 597 | 5.22e-50 | 187 |
| MS.gene52383.t1 | AT3G22170 | 22.794 | 680 | 431 | 15 | 34 | 708 | 69 | 659 | 6.88e-49 | 186 |
| MS.gene52383.t1 | AT3G22170 | 22.794 | 680 | 431 | 15 | 34 | 708 | 69 | 659 | 6.88e-49 | 186 |
| MS.gene52383.t1 | AT5G18960 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.76e-46 | 177 |
| MS.gene52383.t1 | AT5G18960 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.76e-46 | 177 |
| MS.gene52383.t1 | AT4G38170 | 24.532 | 481 | 295 | 13 | 235 | 703 | 24 | 448 | 8.20e-44 | 167 |
| MS.gene52383.t1 | AT5G28530 | 24.100 | 639 | 388 | 17 | 40 | 660 | 60 | 619 | 6.52e-42 | 163 |
| MS.gene52383.t1 | AT5G28530 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 4.23e-41 | 160 |
| MS.gene52383.t1 | AT5G28530 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 4.23e-41 | 160 |
| MS.gene52383.t1 | AT1G10240 | 24.640 | 625 | 375 | 20 | 49 | 659 | 62 | 604 | 4.27e-41 | 160 |
| MS.gene52383.t1 | AT1G10240 | 24.640 | 625 | 375 | 20 | 49 | 659 | 62 | 604 | 4.27e-41 | 160 |
| MS.gene52383.t1 | AT2G32250 | 23.758 | 745 | 431 | 21 | 4 | 743 | 10 | 622 | 1.60e-39 | 157 |
| MS.gene52383.t1 | AT2G32250 | 23.758 | 745 | 431 | 21 | 4 | 743 | 10 | 622 | 1.82e-39 | 157 |
| MS.gene52383.t1 | AT2G32250 | 23.758 | 745 | 431 | 21 | 4 | 743 | 10 | 622 | 1.82e-39 | 157 |
| MS.gene52383.t1 | AT2G32250 | 23.758 | 745 | 431 | 21 | 4 | 743 | 10 | 622 | 1.82e-39 | 157 |
| MS.gene52383.t1 | AT2G32250 | 23.758 | 745 | 431 | 21 | 4 | 743 | 10 | 622 | 1.90e-39 | 157 |
| MS.gene52383.t1 | AT2G32250 | 23.758 | 745 | 431 | 21 | 4 | 743 | 10 | 622 | 1.90e-39 | 157 |
| MS.gene52383.t1 | AT2G32250 | 23.729 | 708 | 406 | 19 | 41 | 743 | 3 | 581 | 1.07e-38 | 154 |
| MS.gene52383.t1 | AT2G32250 | 23.729 | 708 | 406 | 19 | 41 | 743 | 3 | 581 | 1.20e-38 | 154 |
| MS.gene52383.t1 | AT1G80010 | 23.913 | 644 | 385 | 23 | 41 | 662 | 101 | 661 | 5.56e-37 | 149 |
| MS.gene52383.t1 | AT1G52520 | 22.240 | 625 | 406 | 16 | 41 | 662 | 91 | 638 | 2.00e-34 | 140 |
| MS.gene52383.t1 | AT4G19990 | 29.615 | 260 | 176 | 4 | 227 | 483 | 171 | 426 | 2.13e-27 | 119 |
| MS.gene52383.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.20e-12 | 71.2 |
| MS.gene52383.t1 | AT4G19990 | 29.615 | 260 | 176 | 4 | 227 | 483 | 114 | 369 | 2.22e-27 | 119 |
| MS.gene52383.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.11e-12 | 71.2 |
| MS.gene52383.t1 | AT4G19990 | 29.615 | 260 | 176 | 4 | 227 | 483 | 171 | 426 | 2.33e-27 | 119 |
| MS.gene52383.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.20e-12 | 71.2 |
| MS.gene52383.t1 | AT4G19990 | 29.615 | 260 | 176 | 4 | 227 | 483 | 171 | 426 | 2.33e-27 | 119 |
| MS.gene52383.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.20e-12 | 71.2 |
| MS.gene52383.t1 | AT4G19990 | 29.615 | 260 | 176 | 4 | 227 | 483 | 185 | 440 | 2.37e-27 | 119 |
| MS.gene52383.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.21e-12 | 71.2 |
| MS.gene52383.t1 | AT4G19990 | 29.615 | 260 | 176 | 4 | 227 | 483 | 171 | 426 | 3.11e-27 | 118 |
| MS.gene52383.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.09e-12 | 71.2 |
| MS.gene52383.t1 | AT4G19990 | 29.615 | 260 | 176 | 4 | 227 | 483 | 171 | 426 | 3.11e-27 | 118 |
| MS.gene52383.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.09e-12 | 71.2 |
| MS.gene52383.t1 | AT5G28530 | 21.429 | 630 | 353 | 19 | 40 | 660 | 60 | 556 | 6.14e-24 | 107 |
| MS.gene52383.t1 | AT5G28530 | 21.270 | 630 | 350 | 20 | 40 | 660 | 60 | 552 | 3.74e-23 | 105 |
Find 0 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACCATAATTATAGTTTAA+TGG | + | 24327:39448-39467 | None:intergenic | 15.0% |
| !! | AAACCATTAAACTATAATTA+TGG | - | 24327:39442-39461 | MS.gene52383:CDS | 15.0% |
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | 24327:39236-39255 | MS.gene52383:CDS | 15.0% |
| !! | ATGTCTATAAGATATATAAG+TGG | - | 24327:36805-36824 | MS.gene52383:intron | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | 24327:36596-36615 | MS.gene52383:intron | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | - | 24327:36806-36825 | MS.gene52383:intron | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | 24327:36540-36559 | MS.gene52383:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | 24327:37423-37442 | MS.gene52383:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | 24327:38045-38064 | MS.gene52383:CDS | 20.0% |
| !!! | CTATACATTTTCACATTTTT+TGG | - | 24327:39379-39398 | MS.gene52383:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | 24327:37395-37414 | MS.gene52383:CDS | 20.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | 24327:37883-37902 | None:intergenic | 25.0% |
| ! | AATTCTTGATTGTTATGCAT+TGG | - | 24327:39334-39353 | MS.gene52383:CDS | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | 24327:36602-36621 | MS.gene52383:intron | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | 24327:37240-37259 | MS.gene52383:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | 24327:37266-37285 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | 24327:38416-38435 | None:intergenic | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | - | 24327:36472-36491 | MS.gene52383:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | 24327:38242-38261 | MS.gene52383:CDS | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | 24327:36431-36450 | MS.gene52383:intron | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | 24327:37313-37332 | MS.gene52383:CDS | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | 24327:38381-38400 | None:intergenic | 25.0% |
| ! | TGATGCTTTAACTAAAAAAG+CGG | - | 24327:39267-39286 | MS.gene52383:CDS | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | 24327:38416-38435 | MS.gene52383:intron | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | 24327:37975-37994 | MS.gene52383:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | 24327:37415-37434 | MS.gene52383:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | 24327:37671-37690 | MS.gene52383:CDS | 25.0% |
| !! | TTGGTTTGAATATTATCTTC+TGG | - | 24327:39353-39372 | MS.gene52383:CDS | 25.0% |
| !! | TTTTCAATTACTGAGTTAAG+TGG | - | 24327:39476-39495 | MS.gene52383:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | 24327:38517-38536 | MS.gene52383:intron | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | 24327:36592-36611 | None:intergenic | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | 24327:37422-37441 | MS.gene52383:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | 24327:36918-36937 | MS.gene52383:intron | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | 24327:38049-38068 | MS.gene52383:CDS | 25.0% |
| !!! | TGGTTTTAACGCATTTAATT+TGG | - | 24327:39399-39418 | MS.gene52383:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | 24327:38518-38537 | MS.gene52383:intron | 25.0% |
| AAACACATATGATCTTTCCA+TGG | + | 24327:37486-37505 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | 24327:36648-36667 | MS.gene52383:intron | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | 24327:37248-37267 | MS.gene52383:CDS | 30.0% | |
| AAGAAAGACCAAATCCAATT+AGG | - | 24327:39096-39115 | MS.gene52383:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | 24327:38016-38035 | MS.gene52383:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | 24327:36951-36970 | MS.gene52383:intron | 30.0% | |
| ATATTAACTTCATCTGAGAG+TGG | - | 24327:36396-36415 | MS.gene52383:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | 24327:38017-38036 | MS.gene52383:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | 24327:37710-37729 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | + | 24327:38589-38608 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | 24327:37191-37210 | MS.gene52383:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | - | 24327:36636-36655 | MS.gene52383:intron | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | 24327:38421-38440 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | - | 24327:37352-37371 | MS.gene52383:CDS | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | 24327:38419-38438 | MS.gene52383:intron | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | - | 24327:37931-37950 | MS.gene52383:CDS | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | 24327:38590-38609 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | 24327:37244-37263 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | 24327:36737-36756 | MS.gene52383:intron | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | 24327:36482-36501 | MS.gene52383:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | 24327:38227-38246 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | 24327:36647-36666 | MS.gene52383:intron | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | 24327:37119-37138 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | 24327:38361-38380 | None:intergenic | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | 24327:39107-39126 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | + | 24327:37005-37024 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | 24327:37630-37649 | MS.gene52383:CDS | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | 24327:36849-36868 | None:intergenic | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | 24327:36770-36789 | MS.gene52383:intron | 30.0% |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | 24327:38476-38495 | MS.gene52383:intron | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | 24327:36995-37014 | MS.gene52383:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | 24327:37824-37843 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | 24327:37874-37893 | MS.gene52383:CDS | 30.0% |
| ! | TCAGTTTTCAATTCAATGAG+TGG | + | 24327:39620-39639 | None:intergenic | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | 24327:39089-39108 | None:intergenic | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | 24327:38701-38720 | MS.gene52383:intron | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | - | 24327:38601-38620 | MS.gene52383:intron | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | 24327:37327-37346 | MS.gene52383:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | 24327:38981-39000 | MS.gene52383:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | 24327:38602-38621 | MS.gene52383:intron | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | 24327:38698-38717 | MS.gene52383:intron | 30.0% |
| !!! | AAGACATAGCCAGTATTTTT+TGG | - | 24327:37153-37172 | MS.gene52383:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | - | 24327:37154-37173 | MS.gene52383:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | 24327:38766-38785 | MS.gene52383:intron | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | 24327:37886-37905 | MS.gene52383:CDS | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | 24327:38256-38275 | MS.gene52383:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | 24327:36553-36572 | MS.gene52383:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | 24327:38257-38276 | MS.gene52383:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | 24327:36888-36907 | MS.gene52383:intron | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | + | 24327:38591-38610 | None:intergenic | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | 24327:36736-36755 | MS.gene52383:intron | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | - | 24327:38103-38122 | MS.gene52383:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | 24327:36731-36750 | MS.gene52383:intron | 35.0% | |
| GACAGAAATTCCTTATAGCT+CGG | - | 24327:39162-39181 | MS.gene52383:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | 24327:36950-36969 | MS.gene52383:intron | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | 24327:36673-36692 | MS.gene52383:intron | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | 24327:37031-37050 | MS.gene52383:CDS | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | + | 24327:37462-37481 | None:intergenic | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | 24327:36714-36733 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | 24327:37727-37746 | MS.gene52383:CDS | 35.0% |
| ! | CGAGGCTTTAACAAATTAAG+CGG | - | 24327:39205-39224 | MS.gene52383:CDS | 35.0% |
| ! | GAGGCTTTAACAAATTAAGC+GGG | - | 24327:39206-39225 | MS.gene52383:CDS | 35.0% |
| ! | GCATCTGAAATATTCCTCAA+CGG | - | 24327:38933-38952 | MS.gene52383:CDS | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | 24327:38539-38558 | MS.gene52383:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | 24327:38186-38205 | MS.gene52383:CDS | 35.0% |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | 24327:37333-37352 | MS.gene52383:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | 24327:38059-38078 | MS.gene52383:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | 24327:37899-37918 | MS.gene52383:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | 24327:39035-39054 | None:intergenic | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | 24327:38768-38787 | None:intergenic | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | 24327:38116-38135 | MS.gene52383:CDS | 35.0% |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | 24327:38708-38727 | MS.gene52383:intron | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | 24327:37770-37789 | MS.gene52383:CDS | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | 24327:38769-38788 | MS.gene52383:intron | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | 24327:38222-38241 | None:intergenic | 40.0% | |
| AATGAAGCTCTTTCGAAACC+AGG | - | 24327:37098-37117 | MS.gene52383:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | 24327:37580-37599 | None:intergenic | 40.0% | |
| AGTCGCTTCTTTGACCTAAT+TGG | + | 24327:39113-39132 | None:intergenic | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | - | 24327:36407-36426 | MS.gene52383:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | 24327:38433-38452 | MS.gene52383:intron | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | 24327:38665-38684 | MS.gene52383:intron | 40.0% | |
| ATGTCTGTGAACCATCTGTT+GGG | - | 24327:39057-39076 | MS.gene52383:CDS | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | - | 24327:37466-37485 | MS.gene52383:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | 24327:38664-38683 | MS.gene52383:intron | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | - | 24327:38822-38841 | MS.gene52383:CDS | 40.0% | |
| GAAGCAAAAGAAAGATGACG+AGG | - | 24327:39187-39206 | MS.gene52383:CDS | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | + | 24327:38810-38829 | None:intergenic | 40.0% | |
| GTCAATTCTGATGTAATGCG+CGG | - | 24327:39563-39582 | MS.gene52383:CDS | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | 24327:38835-38854 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | 24327:38432-38451 | MS.gene52383:intron | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | 24327:37834-37853 | MS.gene52383:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | 24327:37576-37595 | MS.gene52383:CDS | 40.0% | |
| TCCATCTGCCCAAAAAATAC+TGG | + | 24327:37165-37184 | None:intergenic | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | 24327:37835-37854 | None:intergenic | 40.0% | |
| TGTCTTCTGCATCATCAACT+TGG | + | 24327:37139-37158 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | 24327:37694-37713 | MS.gene52383:CDS | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | 24327:38571-38590 | MS.gene52383:intron | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | + | 24327:38832-38851 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | 24327:39175-39194 | None:intergenic | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | 24327:38284-38303 | MS.gene52383:CDS | 40.0% |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | 24327:39027-39046 | None:intergenic | 40.0% |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | 24327:38711-38730 | MS.gene52383:intron | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | 24327:38115-38134 | MS.gene52383:CDS | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | 24327:36687-36706 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | 24327:36957-36976 | MS.gene52383:intron | 40.0% |
| AACTCGTCAAAAGGAGATGG+TGG | - | 24327:37040-37059 | MS.gene52383:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | 24327:36699-36718 | None:intergenic | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | + | 24327:38075-38094 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | 24327:38334-38353 | MS.gene52383:CDS | 45.0% | |
| ATTCCTCAACGGTGTTCTTG+AGG | - | 24327:38944-38963 | MS.gene52383:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | 24327:38686-38705 | None:intergenic | 45.0% | |
| CTCAAGTAGCACAAATGCTC+TGG | + | 24327:36861-36880 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | 24327:36741-36760 | MS.gene52383:intron | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | 24327:37037-37056 | MS.gene52383:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | - | 24327:38275-38294 | MS.gene52383:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | 24327:38584-38603 | None:intergenic | 45.0% | |
| GATGTCTGTGAACCATCTGT+TGG | - | 24327:39056-39075 | MS.gene52383:CDS | 45.0% | |
| TGGGTGATTCTATCTTGCCT+TGG | - | 24327:37442-37461 | MS.gene52383:CDS | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | 24327:38666-38685 | MS.gene52383:intron | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | 24327:38956-38975 | MS.gene52383:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | 24327:36750-36769 | None:intergenic | 45.0% | |
| TTGATATCGTTGCGCTTCAG+TGG | + | 24327:38859-38878 | None:intergenic | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | 24327:38138-38157 | MS.gene52383:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | 24327:38121-38140 | MS.gene52383:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | 24327:36753-36772 | MS.gene52383:intron | 45.0% |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | - | 24327:37161-37180 | MS.gene52383:CDS | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | + | 24327:37842-37861 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | 24327:37838-37857 | MS.gene52383:CDS | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | - | 24327:38621-38640 | MS.gene52383:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | 24327:38339-38358 | None:intergenic | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | 24327:38070-38089 | MS.gene52383:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | - | 24327:38622-38641 | MS.gene52383:intron | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | 24327:37907-37926 | MS.gene52383:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | 24327:38908-38927 | MS.gene52383:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | 24327:38949-38968 | MS.gene52383:CDS | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | 24327:37906-37925 | MS.gene52383:CDS | 50.0% | |
| ! | CGTCAAAAGGAGATGGTGGT+TGG | - | 24327:37044-37063 | MS.gene52383:CDS | 50.0% |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | 24327:39071-39090 | None:intergenic | 50.0% |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | 24327:36963-36982 | MS.gene52383:intron | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | 24327:37855-37874 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | 24327:38948-38967 | MS.gene52383:CDS | 55.0% | |
| CTGCCTCAAGAACACCGTTG+AGG | + | 24327:38950-38969 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | 24327:38340-38359 | None:intergenic | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | 24327:38962-38981 | MS.gene52383:CDS | 55.0% | |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | 24327:36966-36985 | MS.gene52383:intron | 55.0% |
| ACGTGTTTGCGCAGATGCGG+AGG | - | 24327:38911-38930 | MS.gene52383:CDS | 60.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | 24327:36971-36990 | MS.gene52383:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 24327 | gene | 36387 | 39702 | 36387 | ID=MS.gene52383 |
| 24327 | mRNA | 36387 | 39702 | 36387 | ID=MS.gene52383.t1;Parent=MS.gene52383 |
| 24327 | exon | 38820 | 39702 | 38820 | ID=MS.gene52383.t1.exon1;Parent=MS.gene52383.t1 |
| 24327 | CDS | 38820 | 39702 | 38820 | ID=cds.MS.gene52383.t1;Parent=MS.gene52383.t1 |
| 24327 | exon | 36972 | 38385 | 36972 | ID=MS.gene52383.t1.exon2;Parent=MS.gene52383.t1 |
| 24327 | CDS | 36972 | 38385 | 36972 | ID=cds.MS.gene52383.t1;Parent=MS.gene52383.t1 |
| 24327 | exon | 36387 | 36402 | 36387 | ID=MS.gene52383.t1.exon3;Parent=MS.gene52383.t1 |
| 24327 | CDS | 36387 | 36402 | 36387 | ID=cds.MS.gene52383.t1;Parent=MS.gene52383.t1 |
| Gene Sequence |
| Protein sequence |
