Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52394.t1 | XP_013463217.1 | 81.8 | 280 | 51 | 0 | 1 | 280 | 102 | 381 | 1.50E-119 | 439.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52394.t1 | Q9C6A1 | 29.2 | 106 | 75 | 0 | 154 | 259 | 286 | 391 | 5.7e-06 | 53.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52394.t1 | A0A072V6I2 | 81.8 | 280 | 51 | 0 | 1 | 280 | 102 | 381 | 1.1e-119 | 439.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene52394.t1 | TR | mTERF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52394.t1 | MTR_2g436400 | 92.857 | 280 | 20 | 0 | 1 | 280 | 102 | 381 | 0.0 | 530 |
MS.gene52394.t1 | MTR_2g437060 | 79.570 | 279 | 57 | 0 | 2 | 280 | 111 | 389 | 7.65e-161 | 452 |
MS.gene52394.t1 | MTR_2g437080 | 70.357 | 280 | 83 | 0 | 1 | 280 | 95 | 374 | 3.12e-140 | 400 |
MS.gene52394.t1 | MTR_2g437030 | 69.286 | 280 | 86 | 0 | 1 | 280 | 181 | 460 | 1.41e-133 | 386 |
MS.gene52394.t1 | MTR_2g436440 | 67.143 | 280 | 92 | 0 | 1 | 280 | 101 | 380 | 1.60e-130 | 375 |
MS.gene52394.t1 | MTR_2g437020 | 65.480 | 281 | 94 | 2 | 2 | 280 | 95 | 374 | 6.05e-127 | 366 |
MS.gene52394.t1 | MTR_2g437040 | 63.214 | 280 | 103 | 0 | 1 | 280 | 95 | 374 | 2.67e-123 | 357 |
MS.gene52394.t1 | MTR_4g119550 | 53.025 | 281 | 131 | 1 | 1 | 280 | 104 | 384 | 6.08e-105 | 310 |
MS.gene52394.t1 | MTR_2g437170 | 52.281 | 285 | 131 | 3 | 1 | 280 | 110 | 394 | 1.75e-98 | 295 |
MS.gene52394.t1 | MTR_2g437960 | 51.237 | 283 | 135 | 2 | 1 | 280 | 108 | 390 | 5.54e-98 | 293 |
MS.gene52394.t1 | MTR_2g437960 | 51.237 | 283 | 135 | 2 | 1 | 280 | 108 | 390 | 1.31e-97 | 293 |
MS.gene52394.t1 | MTR_2g438010 | 50.877 | 285 | 133 | 3 | 1 | 280 | 125 | 407 | 7.45e-97 | 291 |
MS.gene52394.t1 | MTR_2g437150 | 52.143 | 280 | 129 | 3 | 1 | 275 | 110 | 389 | 1.75e-96 | 290 |
MS.gene52394.t1 | MTR_2g437180 | 50.896 | 279 | 132 | 2 | 1 | 276 | 104 | 380 | 2.22e-95 | 286 |
MS.gene52394.t1 | MTR_2g437160 | 51.064 | 282 | 136 | 1 | 1 | 280 | 118 | 399 | 5.41e-95 | 286 |
MS.gene52394.t1 | MTR_2g437100 | 53.025 | 281 | 127 | 3 | 1 | 276 | 115 | 395 | 1.18e-94 | 285 |
MS.gene52394.t1 | MTR_2g437120 | 52.688 | 279 | 128 | 2 | 1 | 276 | 106 | 383 | 1.50e-94 | 285 |
MS.gene52394.t1 | MTR_2g437130 | 49.643 | 280 | 141 | 0 | 1 | 280 | 96 | 375 | 4.79e-93 | 280 |
MS.gene52394.t1 | MTR_2g437200 | 46.178 | 314 | 131 | 2 | 1 | 276 | 85 | 398 | 1.68e-92 | 279 |
MS.gene52394.t1 | MTR_2g437990 | 48.582 | 282 | 143 | 1 | 1 | 280 | 105 | 386 | 4.84e-92 | 279 |
MS.gene52394.t1 | MTR_2g076320 | 48.780 | 287 | 134 | 2 | 2 | 280 | 106 | 387 | 1.56e-90 | 274 |
MS.gene52394.t1 | MTR_2g437260 | 46.570 | 277 | 146 | 1 | 1 | 275 | 89 | 365 | 7.98e-89 | 270 |
MS.gene52394.t1 | MTR_2g437240 | 44.025 | 318 | 140 | 2 | 1 | 280 | 85 | 402 | 1.10e-88 | 270 |
MS.gene52394.t1 | MTR_2g438020 | 45.541 | 314 | 133 | 2 | 1 | 276 | 124 | 437 | 1.35e-88 | 272 |
MS.gene52394.t1 | MTR_2g436460 | 46.570 | 277 | 147 | 1 | 1 | 276 | 100 | 376 | 3.28e-85 | 260 |
MS.gene52394.t1 | MTR_2g019840 | 48.592 | 284 | 138 | 4 | 1 | 280 | 96 | 375 | 2.59e-84 | 258 |
MS.gene52394.t1 | MTR_2g437940 | 47.857 | 280 | 121 | 3 | 1 | 280 | 104 | 358 | 5.88e-80 | 246 |
MS.gene52394.t1 | MTR_2g019810 | 46.071 | 280 | 147 | 3 | 1 | 278 | 84 | 361 | 1.80e-79 | 244 |
MS.gene52394.t1 | MTR_2g437090 | 69.753 | 162 | 49 | 0 | 119 | 280 | 1 | 162 | 2.60e-78 | 235 |
MS.gene52394.t1 | MTR_4g120380 | 42.701 | 274 | 157 | 0 | 1 | 274 | 97 | 370 | 1.44e-72 | 227 |
MS.gene52394.t1 | MTR_4g119580 | 41.971 | 274 | 159 | 0 | 1 | 274 | 97 | 370 | 2.02e-71 | 224 |
MS.gene52394.t1 | MTR_4g120380 | 42.913 | 254 | 145 | 0 | 1 | 254 | 97 | 350 | 8.44e-67 | 214 |
MS.gene52394.t1 | MTR_2g437160 | 54.082 | 196 | 87 | 1 | 88 | 280 | 113 | 308 | 3.62e-66 | 209 |
MS.gene52394.t1 | MTR_4g119570 | 36.842 | 247 | 123 | 2 | 26 | 272 | 14 | 227 | 3.11e-47 | 157 |
MS.gene52394.t1 | MTR_3g450500 | 32.509 | 283 | 181 | 4 | 2 | 276 | 92 | 372 | 7.95e-45 | 155 |
MS.gene52394.t1 | MTR_2g436370 | 77.895 | 95 | 21 | 0 | 1 | 95 | 101 | 195 | 1.22e-41 | 142 |
MS.gene52394.t1 | MTR_4g007490 | 30.070 | 286 | 189 | 4 | 1 | 278 | 90 | 372 | 4.03e-36 | 132 |
MS.gene52394.t1 | MTR_8g080990 | 29.259 | 270 | 187 | 3 | 4 | 270 | 100 | 368 | 9.01e-31 | 118 |
MS.gene52394.t1 | MTR_2g436380 | 55.752 | 113 | 43 | 3 | 119 | 231 | 1 | 106 | 1.48e-30 | 116 |
MS.gene52394.t1 | MTR_8g081000 | 26.259 | 278 | 200 | 3 | 1 | 274 | 109 | 385 | 9.21e-28 | 110 |
MS.gene52394.t1 | MTR_8g081000 | 26.259 | 278 | 200 | 3 | 1 | 274 | 109 | 385 | 9.78e-28 | 110 |
MS.gene52394.t1 | MTR_8g081000 | 26.259 | 278 | 200 | 3 | 1 | 274 | 109 | 385 | 1.34e-27 | 110 |
MS.gene52394.t1 | MTR_3g085240 | 60.377 | 53 | 21 | 0 | 178 | 230 | 176 | 228 | 1.14e-15 | 75.1 |
MS.gene52394.t1 | MTR_4g119615 | 60.000 | 50 | 20 | 0 | 218 | 267 | 26 | 75 | 3.56e-14 | 67.4 |
MS.gene52394.t1 | MTR_2g019830 | 52.857 | 70 | 32 | 1 | 207 | 276 | 131 | 199 | 1.55e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52394.t1 | AT5G07900 | 35.842 | 279 | 173 | 3 | 1 | 273 | 121 | 399 | 9.74e-55 | 182 |
MS.gene52394.t1 | AT1G21150 | 30.282 | 284 | 190 | 4 | 1 | 277 | 72 | 354 | 8.57e-37 | 134 |
MS.gene52394.t1 | AT1G21150 | 30.282 | 284 | 190 | 4 | 1 | 277 | 108 | 390 | 2.24e-36 | 134 |
MS.gene52394.t1 | AT1G21150 | 30.282 | 284 | 190 | 4 | 1 | 277 | 172 | 454 | 4.64e-36 | 134 |
MS.gene52394.t1 | AT1G61980 | 26.861 | 309 | 175 | 6 | 1 | 265 | 104 | 405 | 1.86e-26 | 107 |
MS.gene52394.t1 | AT1G61980 | 26.861 | 309 | 175 | 6 | 1 | 265 | 104 | 405 | 1.86e-26 | 107 |
MS.gene52394.t1 | AT1G61980 | 26.861 | 309 | 175 | 6 | 1 | 265 | 104 | 405 | 1.86e-26 | 107 |
MS.gene52394.t1 | AT5G64950 | 30.175 | 285 | 179 | 6 | 6 | 274 | 96 | 376 | 1.14e-24 | 102 |
MS.gene52394.t1 | AT1G62010 | 25.442 | 283 | 172 | 5 | 20 | 265 | 109 | 389 | 5.24e-24 | 100 |
MS.gene52394.t1 | AT3G46950 | 24.928 | 349 | 186 | 8 | 1 | 277 | 104 | 448 | 4.30e-23 | 98.6 |
MS.gene52394.t1 | AT1G61970 | 25.753 | 299 | 179 | 6 | 1 | 259 | 104 | 399 | 3.45e-22 | 95.5 |
MS.gene52394.t1 | AT1G61970 | 25.753 | 299 | 179 | 6 | 1 | 259 | 104 | 399 | 3.45e-22 | 95.5 |
MS.gene52394.t1 | AT1G61970 | 25.753 | 299 | 179 | 6 | 1 | 259 | 104 | 399 | 3.45e-22 | 95.5 |
MS.gene52394.t1 | AT1G61970 | 25.753 | 299 | 179 | 6 | 1 | 259 | 104 | 399 | 3.45e-22 | 95.5 |
MS.gene52394.t1 | AT1G61970 | 25.753 | 299 | 179 | 6 | 1 | 259 | 104 | 399 | 3.45e-22 | 95.5 |
MS.gene52394.t1 | AT1G61970 | 25.753 | 299 | 179 | 6 | 1 | 259 | 104 | 399 | 3.45e-22 | 95.5 |
MS.gene52394.t1 | AT1G61970 | 25.753 | 299 | 179 | 6 | 1 | 259 | 104 | 399 | 3.45e-22 | 95.5 |
MS.gene52394.t1 | AT1G62120 | 24.510 | 306 | 188 | 6 | 1 | 265 | 108 | 411 | 2.10e-21 | 93.6 |
MS.gene52394.t1 | AT1G61990 | 25.321 | 312 | 187 | 5 | 1 | 273 | 104 | 408 | 6.61e-21 | 92.0 |
MS.gene52394.t1 | AT1G61990 | 25.321 | 312 | 187 | 5 | 1 | 273 | 104 | 408 | 6.61e-21 | 92.0 |
MS.gene52394.t1 | AT1G62085 | 25.217 | 345 | 172 | 10 | 1 | 265 | 107 | 445 | 9.10e-20 | 89.0 |
MS.gene52394.t1 | AT1G62085 | 25.217 | 345 | 172 | 10 | 1 | 265 | 107 | 445 | 9.10e-20 | 89.0 |
MS.gene52394.t1 | AT1G61960 | 23.782 | 349 | 189 | 8 | 1 | 273 | 104 | 451 | 3.31e-17 | 81.6 |
MS.gene52394.t1 | AT1G62110 | 27.835 | 194 | 133 | 3 | 1 | 189 | 104 | 295 | 5.91e-15 | 74.7 |
MS.gene52394.t1 | AT5G23930 | 22.985 | 335 | 182 | 8 | 1 | 264 | 107 | 436 | 6.25e-15 | 74.7 |
Find 48 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAATCTGACAAGGAAATTT+TGG | 0.119034 | 2.3:-54834578 | MS.gene52394:CDS |
TAAATTTAGTGATGAACTTT+TGG | 0.199642 | 2.3:-54834207 | MS.gene52394:CDS |
GTGAAGGAATTAAAGGATTT+GGG | 0.230293 | 2.3:-54834403 | MS.gene52394:CDS |
AGACCAACCCCATTTCTTAA+AGG | 0.251996 | 2.3:+54834294 | None:intergenic |
GGTATTGATTACTGTTGTTT+TGG | 0.274832 | 2.3:+54834339 | None:intergenic |
AAACTTAATGACAAAATATA+AGG | 0.279924 | 2.3:+54834142 | None:intergenic |
GGTGAAGGAATTAAAGGATT+TGG | 0.282534 | 2.3:-54834404 | MS.gene52394:CDS |
ATGGATGTTAACATACAATA+AGG | 0.292032 | 2.3:+54834238 | None:intergenic |
AGGTTGGGACTATTTGATTC+TGG | 0.292547 | 2.3:+54834623 | None:intergenic |
TGACAAAATATAAGGTTGTT+TGG | 0.318444 | 2.3:+54834150 | None:intergenic |
AAACTTTGGCAACACCGTTT+TGG | 0.327649 | 2.3:+54834729 | None:intergenic |
AAGTTGATACCTTTAAGAAA+TGG | 0.365182 | 2.3:-54834303 | MS.gene52394:CDS |
AGTTGATACCTTTAAGAAAT+GGG | 0.365271 | 2.3:-54834302 | MS.gene52394:CDS |
TTGGGTCAATCAGTTGGGTT+GGG | 0.365374 | 2.3:-54834188 | MS.gene52394:CDS |
CAAACATTAAAACTTTGCTT+AGG | 0.367331 | 2.3:-54834468 | MS.gene52394:CDS |
CAAGTCGGTGAAGGAATTAA+AGG | 0.378802 | 2.3:-54834410 | MS.gene52394:CDS |
AACTTATCAGTCACTACAAA+TGG | 0.416436 | 2.3:+54834034 | None:intergenic |
GTCAGAGGTAGAAGCACCTT+TGG | 0.417863 | 2.3:+54834693 | None:intergenic |
AATAGTCCCAACCTATGAAT+TGG | 0.421560 | 2.3:-54834614 | MS.gene52394:CDS |
TATCAACTTTCTCTTTCCAT+AGG | 0.439630 | 2.3:+54834317 | None:intergenic |
GGTTTGCAGGAAAGCAGCTC+TGG | 0.441213 | 2.3:+54834754 | None:intergenic |
AAACATTAAAACTTTGCTTA+GGG | 0.450947 | 2.3:-54834467 | MS.gene52394:CDS |
ATCACAATGCTGATTGAGAA+TGG | 0.457142 | 2.3:-54834502 | MS.gene52394:CDS |
GGAAAGCAGCTCTGGCATCT+TGG | 0.471973 | 2.3:+54834762 | None:intergenic |
GAATCTGTACACCAATTCAT+AGG | 0.478001 | 2.3:+54834603 | None:intergenic |
TTTGGGTCAATCAGTTGGGT+TGG | 0.480856 | 2.3:-54834189 | MS.gene52394:CDS |
CTGTACACCAATTCATAGGT+TGG | 0.484595 | 2.3:+54834607 | None:intergenic |
AGGCTTGCATACAAAACTCT+AGG | 0.506576 | 2.3:+54834646 | None:intergenic |
TCAGTTGGGTTGGGATGCTA+TGG | 0.506950 | 2.3:-54834179 | MS.gene52394:CDS |
TGTACACCAATTCATAGGTT+GGG | 0.507173 | 2.3:+54834608 | None:intergenic |
TCACAATGCTGATTGAGAAT+GGG | 0.508211 | 2.3:-54834501 | MS.gene52394:CDS |
AATATAAGGTTGTTTGGCAA+TGG | 0.508469 | 2.3:+54834156 | None:intergenic |
CAACAGTAATCAATACCCTA+TGG | 0.513109 | 2.3:-54834333 | MS.gene52394:CDS |
ATCAACTTTCTCTTTCCATA+GGG | 0.529759 | 2.3:+54834318 | None:intergenic |
GTGCAATTTCTTCTCAACAA+AGG | 0.536369 | 2.3:-54834088 | MS.gene52394:CDS |
TTCCTGCAAACCCTCCAAAA+CGG | 0.545667 | 2.3:-54834743 | MS.gene52394:CDS |
GTTGATACCTTTAAGAAATG+GGG | 0.553181 | 2.3:-54834301 | MS.gene52394:CDS |
TTGGGACTATTTGATTCTGG+AGG | 0.560239 | 2.3:+54834626 | None:intergenic |
AATTGCACAACAGCGGCCCT+CGG | 0.562081 | 2.3:+54834103 | None:intergenic |
CAGATTCTTGCAATCTGACA+AGG | 0.575407 | 2.3:-54834587 | MS.gene52394:CDS |
GGCTTGCATACAAAACTCTA+GGG | 0.581368 | 2.3:+54834647 | None:intergenic |
ATACCTTTAAGAAATGGGGT+TGG | 0.587688 | 2.3:-54834297 | MS.gene52394:CDS |
TGAAGGAATTAAAGGATTTG+GGG | 0.597102 | 2.3:-54834402 | MS.gene52394:CDS |
TGACATGCTCAAGTCGGTGA+AGG | 0.598383 | 2.3:-54834419 | MS.gene52394:CDS |
GACAATGTTAACAATGTCAG+AGG | 0.618058 | 2.3:+54834678 | None:intergenic |
CACAATGCTGATTGAGAATG+GGG | 0.632348 | 2.3:-54834500 | MS.gene52394:CDS |
GAGAAGAAATTGCACAACAG+CGG | 0.635644 | 2.3:+54834096 | None:intergenic |
GAGACGTGACATGCTCAAGT+CGG | 0.666473 | 2.3:-54834425 | MS.gene52394:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACTTAATGACAAAATATA+AGG | + | chr2.3:54834579-54834598 | None:intergenic | 15.0% |
!!! | CACTAAATTTATTTTTTCAA+TGG | + | chr2.3:54834502-54834521 | None:intergenic | 15.0% |
!!! | TTATATTTTGTCATTAAGTT+TGG | - | chr2.3:54834578-54834597 | MS.gene52394:CDS | 15.0% |
!! | AAACATTAAAACTTTGCTTA+GGG | - | chr2.3:54834251-54834270 | MS.gene52394:CDS | 20.0% |
!!! | AAATTTAGTGATGAACTTTT+GGG | - | chr2.3:54834512-54834531 | MS.gene52394:CDS | 20.0% |
!!! | TAAATTTAGTGATGAACTTT+TGG | - | chr2.3:54834511-54834530 | MS.gene52394:CDS | 20.0% |
!!! | TTATCTTTTAAAGTTGTATG+AGG | - | chr2.3:54834749-54834768 | MS.gene52394:CDS | 20.0% |
! | ATGGATGTTAACATACAATA+AGG | + | chr2.3:54834483-54834502 | None:intergenic | 25.0% |
! | CAAACATTAAAACTTTGCTT+AGG | - | chr2.3:54834250-54834269 | MS.gene52394:CDS | 25.0% |
! | GAGAGAAAAAATTGAAACTT+TGG | + | chr2.3:54834006-54834025 | None:intergenic | 25.0% |
! | TGACAAAATATAAGGTTGTT+TGG | + | chr2.3:54834571-54834590 | None:intergenic | 25.0% |
! | TGTCATTAAGTTTGGAAAAA+AGG | - | chr2.3:54834586-54834605 | MS.gene52394:CDS | 25.0% |
!! | AATCCTTCAAAAACAACTTT+TGG | - | chr2.3:54834342-54834361 | MS.gene52394:CDS | 25.0% |
!! | AGTTGATACCTTTAAGAAAT+GGG | - | chr2.3:54834416-54834435 | MS.gene52394:CDS | 25.0% |
!!! | AAGTTGATACCTTTAAGAAA+TGG | - | chr2.3:54834415-54834434 | MS.gene52394:CDS | 25.0% |
!!! | TATAAAACGTTTTGAGAATG+AGG | - | chr2.3:54834722-54834741 | MS.gene52394:CDS | 25.0% |
!!! | TTTCAATTTTTTCTCTCCAA+AGG | - | chr2.3:54834009-54834028 | MS.gene52394:CDS | 25.0% |
AACTTATCAGTCACTACAAA+TGG | + | chr2.3:54834687-54834706 | None:intergenic | 30.0% | |
AATATAAGGTTGTTTGGCAA+TGG | + | chr2.3:54834565-54834584 | None:intergenic | 30.0% | |
ATCAACTTTCTCTTTCCATA+GGG | + | chr2.3:54834403-54834422 | None:intergenic | 30.0% | |
GTGAAGGAATTAAAGGATTT+GGG | - | chr2.3:54834315-54834334 | MS.gene52394:CDS | 30.0% | |
TATCAACTTTCTCTTTCCAT+AGG | + | chr2.3:54834404-54834423 | None:intergenic | 30.0% | |
TGAAGGAATTAAAGGATTTG+GGG | - | chr2.3:54834316-54834335 | MS.gene52394:CDS | 30.0% | |
! | GTTGATACCTTTAAGAAATG+GGG | - | chr2.3:54834417-54834436 | MS.gene52394:CDS | 30.0% |
!!! | GGTATTGATTACTGTTGTTT+TGG | + | chr2.3:54834382-54834401 | None:intergenic | 30.0% |
AATAGTCCCAACCTATGAAT+TGG | - | chr2.3:54834104-54834123 | MS.gene52394:CDS | 35.0% | |
CAACAGTAATCAATACCCTA+TGG | - | chr2.3:54834385-54834404 | MS.gene52394:CDS | 35.0% | |
GAATCTGTACACCAATTCAT+AGG | + | chr2.3:54834118-54834137 | None:intergenic | 35.0% | |
GACAATGTTAACAATGTCAG+AGG | + | chr2.3:54834043-54834062 | None:intergenic | 35.0% | |
GGTGAAGGAATTAAAGGATT+TGG | - | chr2.3:54834314-54834333 | MS.gene52394:CDS | 35.0% | |
GTGCAATTTCTTCTCAACAA+AGG | - | chr2.3:54834630-54834649 | MS.gene52394:CDS | 35.0% | |
TATGAGGAAAAACGCAATCT+AGG | - | chr2.3:54834765-54834784 | MS.gene52394:CDS | 35.0% | |
TGTACACCAATTCATAGGTT+GGG | + | chr2.3:54834113-54834132 | None:intergenic | 35.0% | |
! | ATACCTTTAAGAAATGGGGT+TGG | - | chr2.3:54834421-54834440 | MS.gene52394:CDS | 35.0% |
! | ATCACAATGCTGATTGAGAA+TGG | - | chr2.3:54834216-54834235 | MS.gene52394:CDS | 35.0% |
! | GCAATCTGACAAGGAAATTT+TGG | - | chr2.3:54834140-54834159 | MS.gene52394:CDS | 35.0% |
! | TCACAATGCTGATTGAGAAT+GGG | - | chr2.3:54834217-54834236 | MS.gene52394:CDS | 35.0% |
!! | AACTTTTGGGTCAATCAGTT+GGG | - | chr2.3:54834525-54834544 | MS.gene52394:CDS | 35.0% |
!!! | GCACCAAAAGTTGTTTTTGA+AGG | + | chr2.3:54834348-54834367 | None:intergenic | 35.0% |
AGACCAACCCCATTTCTTAA+AGG | + | chr2.3:54834427-54834446 | None:intergenic | 40.0% | |
AGGCTTGCATACAAAACTCT+AGG | + | chr2.3:54834075-54834094 | None:intergenic | 40.0% | |
AGGTTGGGACTATTTGATTC+TGG | + | chr2.3:54834098-54834117 | None:intergenic | 40.0% | |
CAAGTCGGTGAAGGAATTAA+AGG | - | chr2.3:54834308-54834327 | MS.gene52394:CDS | 40.0% | |
CAGATTCTTGCAATCTGACA+AGG | - | chr2.3:54834131-54834150 | MS.gene52394:CDS | 40.0% | |
CTGTACACCAATTCATAGGT+TGG | + | chr2.3:54834114-54834133 | None:intergenic | 40.0% | |
GAGAAGAAATTGCACAACAG+CGG | + | chr2.3:54834625-54834644 | None:intergenic | 40.0% | |
GGAAAAAAGGATCATTCCGA+GGG | - | chr2.3:54834599-54834618 | MS.gene52394:CDS | 40.0% | |
GGCTTGCATACAAAACTCTA+GGG | + | chr2.3:54834074-54834093 | None:intergenic | 40.0% | |
TGGAAAAAAGGATCATTCCG+AGG | - | chr2.3:54834598-54834617 | MS.gene52394:CDS | 40.0% | |
TTGGGACTATTTGATTCTGG+AGG | + | chr2.3:54834095-54834114 | None:intergenic | 40.0% | |
! | AAACTTTGGCAACACCGTTT+TGG | + | chr2.3:54833992-54834011 | None:intergenic | 40.0% |
! | CACAATGCTGATTGAGAATG+GGG | - | chr2.3:54834218-54834237 | MS.gene52394:CDS | 40.0% |
!! | GAACTTTTGGGTCAATCAGT+TGG | - | chr2.3:54834524-54834543 | MS.gene52394:CDS | 40.0% |
TTCCTGCAAACCCTCCAAAA+CGG | - | chr2.3:54833975-54833994 | MS.gene52394:CDS | 45.0% | |
TTGGGTCAATCAGTTGGGTT+GGG | - | chr2.3:54834530-54834549 | MS.gene52394:CDS | 45.0% | |
TTTGGGTCAATCAGTTGGGT+TGG | - | chr2.3:54834529-54834548 | MS.gene52394:CDS | 45.0% | |
!! | TTTGGCAACACCGTTTTGGA+GGG | + | chr2.3:54833988-54834007 | None:intergenic | 45.0% |
GAGACGTGACATGCTCAAGT+CGG | - | chr2.3:54834293-54834312 | MS.gene52394:CDS | 50.0% | |
TGACATGCTCAAGTCGGTGA+AGG | - | chr2.3:54834299-54834318 | MS.gene52394:CDS | 50.0% | |
! | CTTTGGCAACACCGTTTTGG+AGG | + | chr2.3:54833989-54834008 | None:intergenic | 50.0% |
!! | GTCAGAGGTAGAAGCACCTT+TGG | + | chr2.3:54834028-54834047 | None:intergenic | 50.0% |
!! | TCAGTTGGGTTGGGATGCTA+TGG | - | chr2.3:54834539-54834558 | MS.gene52394:CDS | 50.0% |
AATTGCACAACAGCGGCCCT+CGG | + | chr2.3:54834618-54834637 | None:intergenic | 55.0% | |
GGTTTGCAGGAAAGCAGCTC+TGG | + | chr2.3:54833967-54833986 | None:intergenic | 55.0% | |
! | GGAAAGCAGCTCTGGCATCT+TGG | + | chr2.3:54833959-54833978 | None:intergenic | 55.0% |
!!! | CACCGTTTTGGAGGGTTTGC+AGG | + | chr2.3:54833980-54833999 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 54833949 | 54834791 | 54833949 | ID=MS.gene52394 |
chr2.3 | mRNA | 54833949 | 54834791 | 54833949 | ID=MS.gene52394.t1;Parent=MS.gene52394 |
chr2.3 | exon | 54833949 | 54834791 | 54833949 | ID=MS.gene52394.t1.exon1;Parent=MS.gene52394.t1 |
chr2.3 | CDS | 54833949 | 54834791 | 54833949 | ID=cds.MS.gene52394.t1;Parent=MS.gene52394.t1 |
Gene Sequence |
Protein sequence |