AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52418

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52418.t1 MTR_8g040560 55.556 207 90 1 216 420 735 941 2.67e-61 226
MS.gene52418.t1 MTR_8g040560 43.902 246 90 2 541 786 744 941 6.54e-50 191
MS.gene52418.t1 MTR_8g040560 63.504 137 50 0 781 917 744 880 2.66e-47 183
MS.gene52418.t1 MTR_8g040560 41.485 229 104 7 5 213 428 646 6.48e-39 157
MS.gene52418.t1 MTR_8g040560 67.213 61 20 0 415 475 744 804 5.53e-16 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52418.t1 AT3G12280 48.077 208 93 4 216 420 726 921 3.30e-47 183
MS.gene52418.t1 AT3G12280 44.700 217 90 6 11 207 426 632 3.91e-42 167
MS.gene52418.t1 AT3G12280 39.837 246 89 5 541 786 735 921 1.53e-38 155
MS.gene52418.t1 AT3G12280 57.463 134 53 2 781 914 735 864 1.70e-37 152
MS.gene52418.t1 AT3G12280 60.656 61 24 0 415 475 735 795 2.69e-13 74.7
MS.gene52418.t1 AT3G12280 48.077 208 93 4 216 420 726 921 3.31e-47 183
MS.gene52418.t1 AT3G12280 44.700 217 90 6 11 207 426 632 3.91e-42 167
MS.gene52418.t1 AT3G12280 39.837 246 89 5 541 786 735 921 1.54e-38 155
MS.gene52418.t1 AT3G12280 57.463 134 53 2 781 914 735 864 1.70e-37 152
MS.gene52418.t1 AT3G12280 60.656 61 24 0 415 475 735 795 2.69e-13 74.7

Find 201 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAACTGAACCTGAGTTTC+TGG 0.137982 2.3:+54549318 MS.gene52418:CDS
CTTGGGAAAGTTAATATTTC+AGG 0.148410 2.3:-54550693 None:intergenic
CTCTGTAGAGCCACTGCTTT+TGG 0.167941 2.3:+54553869 MS.gene52418:CDS
CTCTGTAGAGCCACTGCTTT+TGG 0.167941 2.3:+54556829 MS.gene52418:CDS
CCAGAATCTAGTAAAATAAT+AGG 0.219822 2.3:+54553798 MS.gene52418:CDS
GGAGAGCATGGCATGGAAAA+AGG 0.224771 2.3:+54548480 MS.gene52418:CDS
TTCATTCAAAGAACAACTTT+TGG 0.245558 2.3:+54548459 MS.gene52418:CDS
AGTATTTCATGTAGTGTTTC+GGG 0.247285 2.3:-54548220 None:intergenic
AGACTATATTTCCTGATAAT+TGG 0.248972 2.3:+54548113 MS.gene52418:CDS
AATCAACAACTTCAGCTAAT+TGG 0.265538 2.3:-54549553 None:intergenic
TGTTTCGGGCTCCTTCTTCT+TGG 0.285142 2.3:-54548206 None:intergenic
TTTCTATTCAGCCAATTATC+AGG 0.299835 2.3:-54548124 None:intergenic
TGTTGGGTGAAGTCAGAATT+AGG 0.300929 2.3:+54556390 MS.gene52418:CDS
TATGAAAATCGGAGAAGATA+TGG 0.312395 2.3:-54550136 None:intergenic
AGAGGTGTGTCCGCTGGTTT+AGG 0.315056 2.3:-54549154 None:intergenic
TTGGGAGCAGTCAGAATAAA+TGG 0.315321 2.3:+54550032 MS.gene52418:CDS
TTGGGAGCAGTCAGAATAAA+TGG 0.323657 2.3:+54555601 MS.gene52418:CDS
ATACGTCCTCCCTTGTCCTT+TGG 0.323788 2.3:-54549112 None:intergenic
TAGTATTTCATGTAGTGTTT+CGG 0.335939 2.3:-54548221 None:intergenic
TGCTGCTGGTGCGAGTTATT+TGG 0.349200 2.3:-54548300 None:intergenic
CACATGCAAGCAAACATCTA+TGG 0.358139 2.3:-54548258 None:intergenic
TACGTCCTCCCTTGTCCTTT+GGG 0.358218 2.3:-54549111 None:intergenic
GCTCGGAACATTGAGTTAAA+TGG 0.362997 2.3:-54556074 None:intergenic
TTTCTCCTAGATCATTATGT+TGG 0.375290 2.3:+54556373 MS.gene52418:intron
AGATATGGGGTCGTAGAGTT+AGG 0.375966 2.3:-54550121 None:intergenic
AGTACCTCAGATGATGAAAA+TGG 0.376291 2.3:-54549798 None:intergenic
TCTGATGATGTAGGATTCTC+TGG 0.386395 2.3:-54552618 None:intergenic
CCCGTGTTTCCTAGATCTGT+TGG 0.388071 2.3:+54555582 MS.gene52418:intron
GAATGTATACCATCTCTTCC+AGG 0.390572 2.3:+54550094 MS.gene52418:CDS
CGTATTTGTTGATTGGTCAT+TGG 0.390654 2.3:+54553764 MS.gene52418:CDS
CGTATTTGTTGATTGGTCAT+TGG 0.390654 2.3:+54556724 MS.gene52418:CDS
TTGATAGCGTATTTGTTGAT+TGG 0.394006 2.3:+54553757 MS.gene52418:CDS
TTGATAGCGTATTTGTTGAT+TGG 0.394006 2.3:+54556717 MS.gene52418:CDS
TTCATAGTGAATTTGTTGAT+TGG 0.400565 2.3:+54555921 MS.gene52418:CDS
AAGATTTCCTGTTATGCATT+GGG 0.406154 2.3:+54549740 MS.gene52418:CDS
CTACATTTCGTTGTGAAGTT+GGG 0.407614 2.3:-54548012 None:intergenic
GGCCATTGGCACGCATGGAC+TGG 0.408428 2.3:+54555942 MS.gene52418:CDS
GGAAGCAACACAAAATGATT+TGG 0.411763 2.3:-54550163 None:intergenic
CCGTGTTTCCTAGATCTGTT+GGG 0.411781 2.3:+54555583 MS.gene52418:intron
AAAACTGAACCTGAGTTTCT+GGG 0.413033 2.3:+54549319 MS.gene52418:CDS
CATCTTTGTCACAGTGCTGC+TGG 0.413867 2.3:-54548314 None:intergenic
CAATGCATAACAGGAAATCT+TGG 0.415525 2.3:-54549738 None:intergenic
TCTGTGGCTTATCATCATTA+TGG 0.417278 2.3:-54549430 None:intergenic
TACTTTATACTATACAGTAT+TGG 0.418535 2.3:+54548168 MS.gene52418:CDS
TGTTTCTCAGATCAGTATGT+TGG 0.421499 2.3:+54549046 MS.gene52418:intron
TCTACATTTCGTTGTGAAGT+TGG 0.424113 2.3:-54548013 None:intergenic
TTCTCCTAGATCATTATGTT+GGG 0.426785 2.3:+54556374 MS.gene52418:intron
TCAGCATCTGGTAAAACAAT+AGG 0.429570 2.3:+54556758 MS.gene52418:CDS
GATTTGGTCAATATGAAAAT+CGG 0.430588 2.3:-54550147 None:intergenic
TATGGCCCGCGCCCGCCAAT+GGG 0.433969 2.3:-54549412 None:intergenic
CTGCACTATATTATGTGCTC+TGG 0.435506 2.3:-54548092 None:intergenic
TGTCTCCTAGATCATTATGT+TGG 0.439372 2.3:+54552519 MS.gene52418:intron
TATGCATGTGTCTCTCCAAT+AGG 0.440195 2.3:+54550756 MS.gene52418:CDS
CAAGATTTCCTGTTATGCAT+TGG 0.442326 2.3:+54549739 MS.gene52418:CDS
AGAAGTCGACTGAAGTATCC+TGG 0.442610 2.3:-54548433 None:intergenic
GCTCAGGACATTGAGCTAGA+TGG 0.442938 2.3:-54550668 None:intergenic
GTTAATATTTCAGGAGGCTC+AGG 0.444282 2.3:-54550684 None:intergenic
TCTTGAAATCATACGCATCA+TGG 0.444821 2.3:+54548041 MS.gene52418:CDS
CAGAATCTAGTAAAATAATA+GGG 0.447373 2.3:+54553799 MS.gene52418:CDS
GATTGCCCATTGGCGGGCGC+GGG 0.447736 2.3:+54549407 MS.gene52418:CDS
GTTTCTCAGATCAGTATGTT+GGG 0.449448 2.3:+54549047 MS.gene52418:intron
ATGAAAATCGGAGAAGATAT+GGG 0.451100 2.3:-54550135 None:intergenic
GCATGCCAGGACTCAGCATC+TGG 0.452002 2.3:+54556746 MS.gene52418:CDS
CGGGCTCCTTCTTCTTGGCT+CGG 0.455002 2.3:-54548201 None:intergenic
TGATTGCCCATTGGCGGGCG+CGG 0.456069 2.3:+54549406 MS.gene52418:CDS
ATCTGTATGGCCACTGGTGA+TGG 0.459470 2.3:+54549496 MS.gene52418:CDS
AGCTGAAGTTGTTGATTCAA+AGG 0.461689 2.3:+54549559 MS.gene52418:CDS
TCTGTCGATGAAGAATTATC+TGG 0.461758 2.3:-54556472 None:intergenic
CTCTCCAATACATCATCAGC+AGG 0.462992 2.3:-54548340 None:intergenic
ACACAAGACATTGAGCTAGA+TGG 0.464043 2.3:-54549695 None:intergenic
CTGTGGTTGCATTCTATAGC+TGG 0.465799 2.3:-54555882 None:intergenic
GCACGCATGGACTGGCCATA+TGG 0.467219 2.3:+54555950 MS.gene52418:CDS
AAGTAAGTGTATCAAATCTT+CGG 0.469338 2.3:-54548150 None:intergenic
AGTACCTCAGATGATCCTAT+TGG 0.469550 2.3:-54550771 None:intergenic
TGTTTCCTAGATCATTATGT+TGG 0.470021 2.3:+54550013 MS.gene52418:intron
GACGGTTGATTTCCTCTGAA+AGG 0.471928 2.3:-54548543 None:intergenic
GTTTCCTAGATCATTATGTT+GGG 0.473365 2.3:+54550014 MS.gene52418:intron
GTCTCCTAGATCATTATGTT+GGG 0.480218 2.3:+54552520 MS.gene52418:intron
TAGGGTTATCTCAGGAGATA+AGG 0.480996 2.3:+54552575 MS.gene52418:CDS
TTATGGCCCGCGCCCGCCAA+TGG 0.482127 2.3:-54549413 None:intergenic
TGATTGGTCATTGGCATGCC+AGG 0.482497 2.3:+54553773 MS.gene52418:CDS
TGATTGGTCATTGGCATGCC+AGG 0.482497 2.3:+54556733 MS.gene52418:CDS
TTATAACCTCCTTAAAAGTC+AGG 0.483868 2.3:-54556655 None:intergenic
CGCTCCATCTGTATGGCCAC+TGG 0.485239 2.3:+54549490 MS.gene52418:CDS
ACGGTTGATTTCCTCTGAAA+GGG 0.485458 2.3:-54548542 None:intergenic
ACACATGAAGACTCTTTCCC+AGG 0.486510 2.3:+54548415 MS.gene52418:CDS
TTTGTTGATTGCCCATTGGC+GGG 0.491247 2.3:+54549401 MS.gene52418:CDS
TCATAGTTTCTGCTGCCTCC+AGG 0.491389 2.3:-54548615 None:intergenic
AGAATAGTTTCATTGAATGA+TGG 0.491623 2.3:-54548589 None:intergenic
ACATATTCGCTCCATCTGTA+TGG 0.497154 2.3:+54549483 MS.gene52418:CDS
AGGAGCGTGGTTGAAATGCT+AGG 0.502214 2.3:+54556410 MS.gene52418:CDS
CAATATGACGATTGAAGAAG+AGG 0.503895 2.3:-54549172 None:intergenic
GTCGTAGAGTTAGGATTCCC+TGG 0.506048 2.3:-54550112 None:intergenic
CTATAATCTCTCGATAAGTT+AGG 0.506862 2.3:-54555859 None:intergenic
GGCCAGTCCATGCGTGCCAA+TGG 0.508439 2.3:-54555944 None:intergenic
AAGAGCATGGTTGAAATGCT+AGG 0.508698 2.3:+54552556 MS.gene52418:CDS
GTTCCCTGCTGATGATGTAT+TGG 0.508997 2.3:+54548336 MS.gene52418:CDS
AGAGAGATGTCTGATGATGT+AGG 0.509767 2.3:-54552627 None:intergenic
GAGATAAGGGAGAATGTATA+CGG 0.509906 2.3:+54552589 MS.gene52418:CDS
AGAATTATCTCACAAGATAG+AGG 0.512835 2.3:+54555639 MS.gene52418:CDS
TCAGAGGAAATCAACCGTCT+TGG 0.513122 2.3:+54548547 MS.gene52418:CDS
AATGCATAACAGGAAATCTT+GGG 0.514779 2.3:-54549737 None:intergenic
GATGATGTATTGGAGAGCTC+TGG 0.517279 2.3:+54548346 MS.gene52418:CDS
GAAGTTGTTGATTCAAAGGA+TGG 0.517332 2.3:+54549563 MS.gene52418:CDS
AGGGTTATCTCAGGAGATAA+GGG 0.517484 2.3:+54552576 MS.gene52418:CDS
TGAAGAAGAGGTGTGTCCGC+TGG 0.517765 2.3:-54549160 None:intergenic
TAGGGTTATCTCAGCAGATA+AGG 0.519446 2.3:+54556429 MS.gene52418:CDS
TGATTGGCCATTGGCACGCA+TGG 0.524304 2.3:+54555937 MS.gene52418:CDS
ATTTGTTGATTGCCCATTGG+CGG 0.524796 2.3:+54549400 MS.gene52418:CDS
CTATAATCTCCTTAAAACTC+AGG 0.530245 2.3:-54553695 None:intergenic
TGAAATGCTAGGGTTATCTC+AGG 0.532115 2.3:+54552567 MS.gene52418:CDS
CTATGCATGTGTCTCTCCAA+TGG 0.533378 2.3:+54556161 MS.gene52418:CDS
CTTGAAATCATACGCATCAT+GGG 0.533418 2.3:+54548042 MS.gene52418:CDS
TATGCATGTGTCTCTCCAAT+GGG 0.533482 2.3:+54556162 MS.gene52418:CDS
TACAATTATCCCAAAGGACA+AGG 0.539877 2.3:+54549102 MS.gene52418:CDS
TTGCTTCTATGTAGTCGCAC+AGG 0.540096 2.3:+54549211 MS.gene52418:CDS
CAGACATAACAGGAAGGCTT+GGG 0.541418 2.3:-54550710 None:intergenic
ACCTCCTTAAAAGTCAGGCT+CGG 0.541985 2.3:-54556650 None:intergenic
ATCACCAGTGGCCATACAGA+TGG 0.542017 2.3:-54549494 None:intergenic
ACAGACATAACAGGAAGGCT+TGG 0.546125 2.3:-54550711 None:intergenic
ATCTCCTTAAAACTCAGGCT+CGG 0.548102 2.3:-54553690 None:intergenic
AGGGTTATCTCAGCAGATAA+GGG 0.550907 2.3:+54556430 MS.gene52418:CDS
CAAAAGCAGTGGCTCTACAG+AGG 0.551471 2.3:-54553868 None:intergenic
CAAAAGCAGTGGCTCTACAG+AGG 0.551471 2.3:-54556828 None:intergenic
AAGCCTTCCTGTTATGTCTG+TGG 0.553212 2.3:+54550713 MS.gene52418:CDS
TCCCACATCAATGTCTTACC+AGG 0.554424 2.3:-54547986 None:intergenic
TTAGGATTCCCTGGAAGAGA+TGG 0.561052 2.3:-54550103 None:intergenic
TGAATTTGTTGATTGGCCAT+TGG 0.561366 2.3:+54555928 MS.gene52418:CDS
AAGCCTTTCTGTTATGTCTG+TGG 0.562011 2.3:+54556119 MS.gene52418:CDS
ATCATACGCATCATGGGGCG+AGG 0.568090 2.3:+54548048 MS.gene52418:CDS
AAAACGGGTGACCTGCACTC+TGG 0.568545 2.3:-54549368 None:intergenic
AATGTATACCATCTCTTCCA+GGG 0.569069 2.3:+54550095 MS.gene52418:CDS
TGTATTTGTTGATTGCCCAT+TGG 0.569139 2.3:+54549397 MS.gene52418:CDS
CTATGTAAAGCCGCTGCTGT+CGG 0.569655 2.3:+54550477 MS.gene52418:intron
GGAGCGTGGTTGAAATGCTA+GGG 0.571354 2.3:+54556411 MS.gene52418:CDS
TGCTAGACCGTCCCTTTCAG+AGG 0.571805 2.3:+54548531 MS.gene52418:CDS
ACAAACAGCAACCAGAGTGC+AGG 0.572144 2.3:+54549357 MS.gene52418:CDS
GTTTCATTGAATGATGGCAT+TGG 0.572221 2.3:-54548583 None:intergenic
CAATGAAACTATTCTCGACC+TGG 0.573458 2.3:+54548597 MS.gene52418:CDS
TTTGGAACTTGGCGCTGAAG+GGG 0.574775 2.3:+54553887 MS.gene52418:CDS
AGTTATTTGGAGTACTTGAT+CGG 0.575426 2.3:-54548287 None:intergenic
CTTCCACAGACATAACAGAA+AGG 0.576860 2.3:-54556122 None:intergenic
TCAGATCAGTATGTTGGGAG+CGG 0.579103 2.3:+54549052 MS.gene52418:intron
TTGCTTCCGTGCAGTTGCAA+AGG 0.581575 2.3:+54550178 MS.gene52418:CDS
TTTGGAACTTGGCGTTGAAG+GGG 0.582633 2.3:+54556847 MS.gene52418:CDS
ATAATTCCAACACGCTTCTG+TGG 0.584901 2.3:-54549446 None:intergenic
GATAAGCCACAGAAGCGTGT+TGG 0.585393 2.3:+54549440 MS.gene52418:CDS
GGGAAAGTTAATATTTCAGG+AGG 0.586410 2.3:-54550690 None:intergenic
GAATACGCGGCATGGCTGAA+AGG 0.587007 2.3:+54549078 MS.gene52418:CDS
AGAGCATGGTTGAAATGCTA+GGG 0.588393 2.3:+54552557 MS.gene52418:CDS
GTACAATCTCCCAGAAACTC+AGG 0.592499 2.3:-54549328 None:intergenic
TGTAATGAAACTTGTGGTGA+TGG 0.594107 2.3:-54548395 None:intergenic
CAAGAACCTTTGCAACTGCA+CGG 0.594438 2.3:-54550184 None:intergenic
TGTGTGCCGAGCCAAGAAGA+AGG 0.595093 2.3:+54548195 MS.gene52418:CDS
CTACAACTATCTCAGCAGAC+AGG 0.595751 2.3:+54550068 MS.gene52418:CDS
AGCGGTCAGAATACGCGGCA+TGG 0.598188 2.3:+54549070 MS.gene52418:CDS
AAAAGCAGTGGCTCTACAGA+GGG 0.599947 2.3:-54553867 None:intergenic
AAAAGCAGTGGCTCTACAGA+GGG 0.599947 2.3:-54556827 None:intergenic
TTGATTTCCTCTGAAAGGGA+CGG 0.607373 2.3:-54548538 None:intergenic
AGTACCTCGGATGATCCCAT+TGG 0.608676 2.3:-54556177 None:intergenic
TGCAATCAGAATCAAGAGCA+TGG 0.611351 2.3:+54552543 MS.gene52418:CDS
GAAGTCGACTGAAGTATCCT+GGG 0.612687 2.3:-54548432 None:intergenic
ATAACAGGAAATCTTGGGAA+AGG 0.622579 2.3:-54549732 None:intergenic
TTGCTTCTGTGCAGTCACAA+AGG 0.625881 2.3:+54556538 MS.gene52418:CDS
CTCTCCAATGGGATCATCCG+AGG 0.629524 2.3:+54556173 MS.gene52418:CDS
AGCAGTCAGAATAAATGGCA+TGG 0.631825 2.3:+54555606 MS.gene52418:CDS
AAAACTCGTGGGTTGCATTG+CGG 0.634698 2.3:-54556695 None:intergenic
CTTCCACAGACATAACAGGA+AGG 0.636074 2.3:-54550716 None:intergenic
TTGCTTCTATGCAGTCACAA+AGG 0.637898 2.3:+54552684 MS.gene52418:CDS
AGCAGTCAGAATAAATGGCA+TGG 0.640293 2.3:+54550037 MS.gene52418:CDS
AAAGGCTACAATTATCCCAA+AGG 0.645341 2.3:+54549096 MS.gene52418:CDS
TGAAAATCGGAGAAGATATG+GGG 0.645893 2.3:-54550134 None:intergenic
ACGCCAAGTTCCAAAAGCAG+TGG 0.646767 2.3:-54556839 None:intergenic
GCGCCAAGTTCCAAAAGCAG+TGG 0.653587 2.3:-54553879 None:intergenic
GTTGAGCAAACAGTCCAAGA+CGG 0.655365 2.3:-54548561 None:intergenic
GAATTCATTAACAAAGCCGA+TGG 0.655551 2.3:+54550544 MS.gene52418:CDS
TGACAAAGAGTTATACAATG+AGG 0.657399 2.3:-54548506 None:intergenic
CTCTCCAATAGGATCATCTG+AGG 0.660685 2.3:+54550767 MS.gene52418:CDS
ACAATTATCCCAAAGGACAA+GGG 0.662029 2.3:+54549103 MS.gene52418:CDS
TTGGGAGCGGTCAGAATACG+CGG 0.673382 2.3:+54549065 MS.gene52418:CDS
ACCTGGTAAGACATTGATGT+GGG 0.674272 2.3:+54547985 MS.gene52418:CDS
AGAAGCAACACACAATGATG+TGG 0.674691 2.3:-54556523 None:intergenic
GTGTAAAGTTCCGACAGCAG+CGG 0.675258 2.3:-54550487 None:intergenic
TTCAGCGAATCCTAAACCAG+CGG 0.676523 2.3:+54549144 MS.gene52418:CDS
CAATGATGTGGTCAATATGA+CGG 0.678181 2.3:-54552657 None:intergenic
CAATGATGTGGTCAATATGA+CGG 0.678181 2.3:-54556511 None:intergenic
AGAAGCAACACACAATGATG+TGG 0.679428 2.3:-54552669 None:intergenic
TTGAAATCATACGCATCATG+GGG 0.681522 2.3:+54548043 MS.gene52418:CDS
GTGATAAGTTCCATCACCAG+TGG 0.684233 2.3:-54549506 None:intergenic
TGAAACTATTCTCGACCTGG+AGG 0.688326 2.3:+54548600 MS.gene52418:CDS
TGAAGTCAGAATTAGGAGCG+TGG 0.693278 2.3:+54556397 MS.gene52418:CDS
CACCTGGTAAGACATTGATG+TGG 0.697380 2.3:+54547984 MS.gene52418:CDS
AAAACACGTGGGTTGCACCG+TGG 0.697661 2.3:-54553735 None:intergenic
ACACTGTTGTGACACCTGCG+AGG 0.699379 2.3:+54550506 MS.gene52418:CDS
AGAGACACATGCATAGTGTG+CGG 0.699537 2.3:-54550748 None:intergenic
ATTATCCCAAAGGACAAGGG+AGG 0.714855 2.3:+54549106 MS.gene52418:CDS
TCTCCAATACATCATCAGCA+GGG 0.719122 2.3:-54548339 None:intergenic
GCAGCTATAAGAAGCAACCA+CGG 0.739982 2.3:+54553718 MS.gene52418:CDS
TTCATGTGTAATGAAACTTG+TGG 0.753409 2.3:-54548401 None:intergenic
AGAGACACATGCATAGTGTG+TGG 0.766106 2.3:-54556154 None:intergenic
AAAACTGGTGGTGTGCACTG+TGG 0.770580 2.3:-54555899 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr2.3 gene 54547980 54556880 54547980 ID=MS.gene52418
chr2.3 mRNA 54547980 54556880 54547980 ID=MS.gene52418.t1;Parent=MS.gene52418
chr2.3 exon 54547980 54548657 54547980 ID=MS.gene52418.t1.exon1;Parent=MS.gene52418.t1
chr2.3 CDS 54547980 54548657 54547980 ID=cds.MS.gene52418.t1;Parent=MS.gene52418.t1
chr2.3 exon 54549056 54549232 54549056 ID=MS.gene52418.t1.exon2;Parent=MS.gene52418.t1
chr2.3 CDS 54549056 54549232 54549056 ID=cds.MS.gene52418.t1;Parent=MS.gene52418.t1
chr2.3 exon 54549314 54549584 54549314 ID=MS.gene52418.t1.exon3;Parent=MS.gene52418.t1
chr2.3 CDS 54549314 54549584 54549314 ID=cds.MS.gene52418.t1;Parent=MS.gene52418.t1
chr2.3 exon 54549694 54549815 54549694 ID=MS.gene52418.t1.exon4;Parent=MS.gene52418.t1
chr2.3 CDS 54549694 54549815 54549694 ID=cds.MS.gene52418.t1;Parent=MS.gene52418.t1
chr2.3 exon 54550023 54550199 54550023 ID=MS.gene52418.t1.exon5;Parent=MS.gene52418.t1
chr2.3 CDS 54550023 54550199 54550023 ID=cds.MS.gene52418.t1;Parent=MS.gene52418.t1
chr2.3 exon 54550487 54550565 54550487 ID=MS.gene52418.t1.exon6;Parent=MS.gene52418.t1
chr2.3 CDS 54550487 54550565 54550487 ID=cds.MS.gene52418.t1;Parent=MS.gene52418.t1
chr2.3 exon 54550667 54550788 54550667 ID=MS.gene52418.t1.exon7;Parent=MS.gene52418.t1
chr2.3 CDS 54550667 54550788 54550667 ID=cds.MS.gene52418.t1;Parent=MS.gene52418.t1
chr2.3 exon 54552529 54552705 54552529 ID=MS.gene52418.t1.exon8;Parent=MS.gene52418.t1
chr2.3 CDS 54552529 54552705 54552529 ID=cds.MS.gene52418.t1;Parent=MS.gene52418.t1
chr2.3 exon 54553681 54553921 54553681 ID=MS.gene52418.t1.exon9;Parent=MS.gene52418.t1
chr2.3 CDS 54553681 54553921 54553681 ID=cds.MS.gene52418.t1;Parent=MS.gene52418.t1
chr2.3 exon 54555596 54555660 54555596 ID=MS.gene52418.t1.exon10;Parent=MS.gene52418.t1
chr2.3 CDS 54555596 54555660 54555596 ID=cds.MS.gene52418.t1;Parent=MS.gene52418.t1
chr2.3 exon 54555857 54555971 54555857 ID=MS.gene52418.t1.exon11;Parent=MS.gene52418.t1
chr2.3 CDS 54555857 54555971 54555857 ID=cds.MS.gene52418.t1;Parent=MS.gene52418.t1
chr2.3 exon 54556073 54556194 54556073 ID=MS.gene52418.t1.exon12;Parent=MS.gene52418.t1
chr2.3 CDS 54556073 54556194 54556073 ID=cds.MS.gene52418.t1;Parent=MS.gene52418.t1
chr2.3 exon 54556383 54556559 54556383 ID=MS.gene52418.t1.exon13;Parent=MS.gene52418.t1
chr2.3 CDS 54556383 54556559 54556383 ID=cds.MS.gene52418.t1;Parent=MS.gene52418.t1
chr2.3 exon 54556641 54556880 54556641 ID=MS.gene52418.t1.exon14;Parent=MS.gene52418.t1
chr2.3 CDS 54556641 54556880 54556641 ID=cds.MS.gene52418.t1;Parent=MS.gene52418.t1
Gene Sequence

>MS.gene52418

ATGGCACCTGGTAAGACATTGATGTGGGAAATCCCAACTTCACAACGAAATGTAGATTACTTCTTGAAATCATACGCATCATGGGGCGAGGATGTTACAGATGTTTTGAGTTCCAGAGCACATAATATAGTGCAGACTATATTTCCTGATAATTGGCTGAATAGAAAGATCCGAAGATTTGATACACTTACTTTATACTATACAGTATTGGAACGTGTGTGCCGAGCCAAGAAGAAGGAGCCCGAAACACTACATGAAATACTAACTTCTGATATCTTCCATAGATGTTTGCTTGCATGTGCTGCTGCCGATCAAGTACTCCAAATAACTCGCACCAGCAGCACTGTGACAAAGATGTTCCCTGCTGATGATGTATTGGAGAGCTCTGGAATTACAGCTTTTGATCTTAGTCATACCATCACCACAAGTTTCATTACACATGAAGACTCTTTCCCAGGATACTTCAGTCGACTTCTCAATTCATTCAAAGAACAACTTTTGGAGAGCATGGCATGGAAAAAGGGTTCCTCATTGTATAACTCTTTGTCACTTGCTAGACCGTCCCTTTCAGAGGAAATCAACCGTCTTGGACTGTTTGCTCAACCAATGCCATCATTCAATGAAACTATTCTCGACCTGGAGGCAGCAGAAACTATGATTGACCTATTTTTCCGTGAGGTAATAATACTGTTTGTTATACCAACCCCCTTGTAGAACAGGAATTGCAAGCTGTATATGAATGAAATAGCTGTTGATAATACTTCTTTTCATAACTGATATTTACTCTCCAAATTCCATTTACATCCTTTTTTTTATTGTGGCAAGACATCAATCTGTTAGTCTGAAGCTCCATCTTAATCATGTTCAACAACTATTGGATGTGTTTGGATTTTATGTTAAGAATTCAAGTTTCCTTTCAAATTGGATTCTTATATCACTTCCATTTTGCTTGTTTCCTTCTGAAACTTATGGGACATTTTTTTTGGTTCGCCTGTTTCTTTTTGATTTCGTTCTTTTGCTGCTTCCCTAAGTCACTTTAAGCATTCCATATTGTTTGCACTTCTTGTGTTTCTCAGATCAGTATGTTGGGAGCGGTCAGAATACGCGGCATGGCTGAAAGGCTACAATTATCCCAAAGGACAAGGGAGGACGTATACAGTCTTTTTCAGCGAATCCTAAACCAGCGGACACACCTCTTCTTCAATCGTCATATTGATCAAATCATGTTGTGTTGCTTCTATGTAGTCGCACAGGTTTCTCTTTTAACTTTGAAAACATGAGAGTGCATTGTGCTTCATTTACCATTTTCTCATTCTATTCTTTTTTATTTGCAGTTTTCAAAACTGAACCTGAGTTTCTGGGAGATTGTACACAGCTACAAACAGCAACCAGAGTGCAGGTCACCCGTTTTTCGCAGTGTATTTGTTGATTGCCCATTGGCGGGCGCGGGCCATAATGATGATAAGCCACAGAAGCGTGTTGGAATTATTACATTTTACAATGACATATTCGCTCCATCTGTATGGCCACTGGTGATGGAACTTATCACTGATGAAGAAACTGTGAAAAGTGACCAATTAGCTGAAGTTGTTGATTCAAAGGATGGTACTTACCTCTTTGTTTGCCTGGCTAAGTTTGCTTTCAATTGTTTGCCCGACTTCCATTGCTATGCCAGTTCTGCAACCCTTTGACTTGTGTGATTTTCTATTCACAGGCCATCTAGCTCAATGTCTTGTGTCTCCAAAAATAGTACCTTTCCCAAGATTTCCTGTTATGCATTGGGAAAAACGATACCCCACAAAAAACTTACGCGTCTCTCCATTTTCATCATCTGAGGTACTAAGTTTCATGTCTGGCTTTCTTTTGACTATTTCTCTTTTCCTACTATGTTTCATGTTTGGCTTTTTTTTTGTTACCATTTTTGGCTTTCTTGTGCTGTAATATTTTCACGGTCCATATTTTTAAATTTAATTATTTTTTTGCTTCACTAAGTCATTTTGAGCATTACATTTTTTTTTTTGTTGCACTTCCGGTGTTTCCTAGATCATTATGTTGGGAGCAGTCAGAATAAATGGCATGGTTGAAAAGCTACAACTATCTCAGCAGACAGGAGAGAATGTATACCATCTCTTCCAGGGAATCCTAACTCTACGACCCCATATCTTCTCCGATTTTCATATTGACCAAATCATTTTGTGTTGCTTCCGTGCAGTTGCAAAGGTTCTTGTAAATCTGAGAGTTGTTTCTCTTTAAGTTTTAGTAATCTGAGAGTGTAATGTGATTCCATTGCTGTTTTCTCTTTTTTTTTTTTTTTGCAGGACCTAACTTTTCCAGGGATTATAGCCAGCTATAAACTGCAACCACAGTACACACCACCAGTTTTTCATAGTGAATTTGCTGATTGGCCATTGGCATGCCTAGACCCGTCATATGGGAAAACAAAGGGACTGACACATATCACTAACATTGTAAAATATTACAATGATATATTCTTTCCCTATGTAAAGCCGCTGCTGTCGGAACTTTACACTGTTGTGACACCTGCGAGGAGTTACAAAATAGCTGAATTCATTAACAAAGCCGATGGTACTAGTTTATCTGCCTAGCTAAGTTACTTTCAATTGTTTTCCTGACTTCCATTGCTATGCAAGTCCTGCAATCCATTGACTTGTATGCTCCATTTATAGGCCATCTAGCTCAATGTCCTGAGCCTCCTGAAATATTAACTTTCCCAAGCCTTCCTGTTATGTCTGTGGAAGAAAAGTCTGCCGCACACTATGCATGTGTCTCTCCAATAGGATCATCTGAGGTACTAAGTTTCTAGTATGGCTTTCCATGGACTATTATATTTTTCCCATATTCTATTTCTTGTTGGTCAAAACATTCAACTGGCATTTTCTTGGGAAAAGAAGCACATGACGCTGTGACTCGTGCAGTTATAGATAAGTTTATGTCAAATGTTGACATTTACAAGGTCAATGTTTTCAATTTTGTACAAAGACTTTAAATTTTGTTCTCCCTCCGTTTCAAGATGAATGTTGTTGAAGGTTTTTACACATATATGAAGAAATGCAATGATTAGAAGAATGAGAATTGTTATTTTACCCACCAACTAATCCTTTTTAACTATTGGTTTGTTTTCTGCTAAAGTAAAAAAAAATGCTTTGGGAGTAATGTACATAGGAGTATTAATTGGAGGGTTCAGTTGGAGGAAAAAAAAAAGTTAACATTGCATTGGAAGCTGAAAATGACCTTCATTTTTAAACAATTTTTTATTTATTTTTTGCTAAAATGACACTCATTTTGAAATGGAGGCAGCGATTTTTAAACTTTTGATTTCTAGTAGAGACAAATTTGTATCTGCAATAAAATTGTTGACTTAGAGAACCAAACCAACTATTTGTTTCGTTGATCGAGAAATTTCTGCAATGCGTCATTGATGTAACCACCATTTTTCTTGATTGAGAATCTCTCACTGTTATATGATGCTAGCTGGAACTGTAACATTTCTGTTGGGCACTGATTCTGCAACTCCTGTGGGAACTTGATTTGAATTGTGTGATAATTTAAGCCCTATTCCCACTTGATGAACCTCAGCCCACAACCGAAATTGATTTTTCTTGGGCCACTACATTTTCTTTACCCTGTAGAAATTAATGAAGGCTTTGCAAGTCTTATCCGTGTTTTAATCGGTCGAATGCAGAGTCCAAAGGGAATAGGATAGAAACTAGCTGGTACTAGAGAAGAAGTGAAGGAATTCACTATTGAACCAAGTAAATGATACACTCAGGTTGTTCGACCTGAACTCTTCGAGCCCAAATCTGATTCATTAACCGAATGCCTCTATTTCCCTCCCTGTAGTCAAACCGCTACAATTTCCTACTAGCAGACCTATAACAGTGGCCATTAAAGCAAATTTGAAACAATGTAAGCACAGTCAACTAATGTTTCCATTTATGTTAAGGGGAATTGTGTTTCTATTGCTTCTTACCACTAGACAGTGGTTTCTTTTTGCTTTGCTGCAAGATTGAAAAATCGTGAAAGTGCAGTTATATAGTAATGTTGTTTGAAACCATTAAATAGAACCCGTTAACAGACTGAATACAGTGCTTTAAGATGGCCGATGACATTAGCGAAGGCTAATCATGTTTGCCCAGCAGTCTATGTTATTATGGAATATTGAATGACCAGTACATATGTATATATATGCAATGCATGATGTTTGCAGCGATTGCCTGCCCTTATTCCCTTTGGGTCATTACAATTTGTACATCCTATTTGTTCAATGTGGCAAGACATCTATCTGTGAATTTGAAGCTGTTCAACATGATTTCAGGAACTATTAGATGTGTTTGTCTTTTAAACTAAGAATTTAAGTTTCCTATTGAATTGAATTGGATTGTCACATCACTTCCGTTTGACTTATTTCGTTGTGATACTTGTGGGGCTGCTTTTCTGGTTCATGTGTTTCTTTAAGTTTTGATCATTTTGTTGCTTCCCTAAGTCATTCTAAGCATTGCATTTTGTTTGCATTTCTTGTGTCTCCTAGATCATTATGTTGGGTGCAATCAGAATCAAGAGCATGGTTGAAATGCTAGGGTTATCTCAGGAGATAAGGGAGAATGTATACGGTCTGTTCCAGAGAATCCTACATCATCAGACATCTCTCTTCTTCAACCGTCATATTGACCACATCATTGTGTGTTGCTTCTATGCAGTCACAAAGGTTTTTGTTTAAATTGAGATACTTGGGAGTATAATTTTTTTTTTTTGATTCAGCAAATATTATTAAACGTCATCCCCGCAAGACGCGAGGTATGGACGAAACAAGATACAAATGGTGCCGCATATAGACGGTACACCATAACCACCAAACAAAGCCTCTAAAAATAAACCCACCATAACACAGTATCCACAAACATCCATCGTCACTTCTCACCCCTAGAGAACACCCCTAGAAAAACTCCTAGACTTCTACACCCAAGCTGAGCCACATTCGAAAAGCTCCTAACCTAATGAGCAAGCAGCTTTCACAACCTCTCGACCTCCGGACTACCGAAAGAGCATAAAACAAAAGCCCAAAAACCAAACTTGAGTCTAAGAGCTAACTCCCGATCTCGAATCAAAAGTGATCGGCCCACCAGACTTTAGAACCAAATCAGCAGGACACCCCTCGCCCCCGGTACACCAGAGAACACCAAATCAAGTCAAACAGAATTGCAGCTAGACACCAACTCCCGATCTCGAAGCAAAATAACCGGCCCACCGGACACCAACACACAAAATGTAAGACGATAGACATGATATGTGATTGGTGCAAACAACAAACCAGTCCCAAGGAAAAGGCTCAAACACAACGGGACATGCACCCTCCAAACACCATAAACACCTAAACAACCCAAAAGCGCCAACAAGAGAAAATGACGACAAACATGGACCCGTGAATCAAAGGCTGCCTCCAAAGGTAAAACACCCCAACAAGAACTCACCTCCTCACCTAAACACCACCTGCCACCCCCTTAGGTAACTCCCGTCTGCAAACCGACCCGCCACCAAAAAACGTAAGTAAAAAAAACCACGTCCAAACCTCCAAACCTCCAAGCCTCACCAAGACCGCCCCACAAACCCCACTCAAAGCCACCGACACCACCTCAATTAATGTGCTTCAATACCCGTTTTCTCATTCTATTCTTTCTTGCAGATTTCAAAACCGAGCCTGAGTTTTAAGGAGATTATAGGCAGCTATAAGAAGCAACCACGGTGCAACCCACGTGTTTTTGATAGCGTATTTGTTGATTGGTCATTGGCATGCCAGGACCCAGAATCTAGTAAAATAATAGGGCATGAGAATGTCTACATTGTTACATTCTGCAATGATATATTTGTTCCCTCTGTAGAGCCACTGCTTTTGGAACTTGGCGCTGAAGGGGAAGCTGTGAAAAGTTGCTGAAAGAGAGTATTTGATTAACTTGATTAACTATTAGTAAGGAAAACTAAATTAATTAGCCTTCTTAAATATTGTAAATTATTTCAAAACTCCTATCAACAGTGATAGAGGGAGTATTTGATTTAGTCAGGGAAATATAAGCATTCAATATTCTTTTTATTAAATAAGTTTTGTATCAATACATAAAAAATAGAAAAAAAGAGATCATTGAAGAAGGTTAGTTTCTGAATTTTCTTGTATTATCTCAAATATGGATGATCCTACAACTCCAATGGTGGATCATATGCTTCCAGTAGTAGATCTTATACGTCCAGTGGTGGATTGTATTGATCAACGCCCACATTTCACGACTGTTCTCAAACTTAAATCATGAGATGAGTTGTTACCATGGGTTCAGTGTGAAGCATTTAAGCTAGGGTTTAATGTTGTTATTGGCAAATCAGATAATGGATAGAGTAATCGAAAGACATTTATTTTAAAAAATTAATATAGCCTTTTTTTGGTAGATCAATGATTAAACCGACTCTTAATTAATAAAGATCACATCATTTATGAGAGAATTTTTGACAAATTTGGTTCTCTCTAGACATGGGATGTATACTTTAGTTTGGACTTTGCGAGATTTCTTAAAAACATAAAGATAATTAGATAATTTTACTGGTCGATAATAGTTTTCATATACGAAGATATTAGACTTTATAGGTTGTTTCCTTCATTCTTGCTTCATAGTTTCAACTGCTTTCCTTTCTATATCTCATTCACATACCTTTGAGCGAATATTTTTTTTTTTTTGAAAGAACCTTTGAGCGAATAATGAATTGCAATGTTTCCAATTTGTTAAATAAAATAAGCACATCTTGTAGAGTAGAAGAGTACAAGGGAAAACTTCTGAACAATGAATTTGTATAGGTAGAATTCTTTTTTTTTTTTTTTGTTATAAGTAGAATTCATTGACACTTGCATGATTTAAGTTTATTATAAATTTATCTTGTTTCATGGCATAAGCATTTAGCAATATGCAAGTTTGTTTTCCTACATTGTTTTTGCTTTTCTTGTTCACTAAGAAAATGGTATTGTTTCGTTGAAATGTTCACACATGTATCTGGACAAAACATTTCAATCAGTAATAATACATAATTTATGTCTAGACTATATATAGCCAACTATCACTTACTGAATAATTGGATATCTGATAAAAACTTATACTTATGAGTGCCACACTTAAAGTAATGCGATATGATTTAGAATGGTGTTAACTTGAAGAAAATATTTGCTTATGTAATGCTGCAGATTAAAAGTGAATTTAATTCCTTGGCAACAAAATGTCGACACACAAAATTTGACATGTGAAATAGGACGGTTCTTGTTATGCAGCAGCAGTTTACAACCTTCATAATGAATCAATGATGCTCAGTATTTAACTGAAGATTGGACAATTATACCTTACAGTGTTGTTTTCCTAGGATCATATTGTAAAGTGTGTGTCCAAATTACACTTTTCCTGGAAAGTGATTCTTGTGCAGTAATAGACGATGTTATCAATGGTTGCGTCAAATATTTACATTTTCACAAACAATATTTATAAAATTAATTATTTTGTTGCTTCGCTTATAAGTCATAATTTGGAGCATTACCGTTCTCTTTTTTTTGCACTTCCCGTGTTTCCTAGATCTGTTGGGAGCAGTCAGAATAAATGGCATGGCTGAAAAGCTAGAATTATCTCACAAGATAGAGGTGAATGTAGGGGAGAATGTATACTATATTTTCCAGCGAATCCTAACTCAACAGCCCCATCTCTTCTCCGATTTTCATATTGACCTAATTATTTTGTGTTGCTTCCATGGAGTTGCAAAGGTTTCTCTTTCAGTTTTAGTAATTTGAGAGGGTAATGTTCTACAGTTGCCGTTTTCTCATTCTTTTTATATTGCAGGGCCTAACTTATCGAGAGATTATAGCCAGCTATAGAATGCAACCACAGTGCACACCACCAGTTTTTCATAGTGAATTTGTTGATTGGCCATTGGCACGCATGGACTGGCCATATGGTACTTGTTCATTTGCCTAGCTAAGTTACTTTCAATTGTTTTCCTGACTTCCATTTCTATGCAAGTCCTGCAATCCATTGACTTGTGTGCTCCATTTACAGACCATTTAACTCAATGTTCCGAGCCTCCTAAAATATTAACTTTCACAAGCCTTTCTGTTATGTCTGTGGAAGAAGTGTCTGCCACACACTATGCATGTGTCTCTCCAATGGGATCATCCGAGGTACTATGTTTTTAGTATGTCTTTCCTTGGACTTTTTCATTTTGCCCATATACTATTTCTAGTTGGTGCAAAACACTCAACTGGCATTTTCCTGGCAAAAGAAGTACACGAGGCTGTGACTCTCGTGCGCTTATAGATAATTTTATGTCAAAGGTTTACATTTTGGTTGCATTTCTTATTTCTCCTAGATCATTATGTTGGGTGAAGTCAGAATTAGGAGCGTGGTTGAAATGCTAGGGTTATCTCAGCAGATAAGGGAGAATGTATACAGTCTGTTCCAGATAATTCTTCATCGACAGACATCTCTCTTCTTCAACCGTCATATTGACCACATCATTGTGTGTTGCTTCTGTGCAGTCACAAAGGTTTTTGTTTAAATTGAGAAACTTGGGAGTATAAGTTTATGTGCCTCAATTCCCGTTTTCTCATCCTATTCTTTCTTGCAGATTTCAAAACCGAGCCTGACTTTTAAGGAGGTTATAAGCATCTATAAGAAGCAACCGCAATGCAACCCACGAGTTTTTGATAGCGTATTTGTTGATTGGTCATTGGCATGCCAGGACTCAGCATCTGGTAAAACAATAGGAAATGAGCATCTCGACATTATTACATTCTGCAATGATATATTTGTTCCCTCTGTAGAGCCACTGCTTTTGGAACTTGGCGTTGAAGGGGAGAAGCTGTGA
Protein sequence

>MS.gene52418.t1

MAPGKTLMWEIPTSQRNVDYFLKSYASWGEDVTDVLSSRAHNIVQTIFPDNWLNRKIRRFDTLTLYYTVLERVCRAKKKEPETLHEILTSDIFHRCLLACAAADQVLQITRTSSTVTKMFPADDVLESSGITAFDLSHTITTSFITHEDSFPGYFSRLLNSFKEQLLESMAWKKGSSLYNSLSLARPSLSEEINRLGLFAQPMPSFNETILDLEAAETMIDLFFREISMLGAVRIRGMAERLQLSQRTREDVYSLFQRILNQRTHLFFNRHIDQIMLCCFYVVAQFSKLNLSFWEIVHSYKQQPECRSPVFRSVFVDCPLAGAGHNDDKPQKRVGIITFYNDIFAPSVWPLVMELITDEETVKSDQLAEVVDSKDGHLAQCLVSPKIVPFPRFPVMHWEKRYPTKNLRVSPFSSSEIIMLGAVRINGMVEKLQLSQQTGENVYHLFQGILTLRPHIFSDFHIDQIILCCFRAVAKPLLSELYTVVTPARSYKIAEFINKADGHLAQCPEPPEILTFPSLPVMSVEEKSAAHYACVSPIGSSEIIMLGAIRIKSMVEMLGLSQEIRENVYGLFQRILHHQTSLFFNRHIDHIIVCCFYAVTKISKPSLSFKEIIGSYKKQPRCNPRVFDSVFVDWSLACQDPESSKIIGHENVYIVTFCNDIFVPSVEPLLLELGAEGEAVKNLLGAVRINGMAEKLELSHKIEGLTYREIIASYRMQPQCTPPVFHSEFVDWPLARMDWPYDHLTQCSEPPKILTFTSLSVMSVEEVSATHYACVSPMGSSEIIMLGEVRIRSVVEMLGLSQQIRENVYSLFQIILHRQTSLFFNRHIDHIIVCCFCAVTKISKPSLTFKEVISIYKKQPQCNPRVFDSVFVDWSLACQDSASGKTIGNEHLDIITFCNDIFVPSVEPLLLELGVEGEKL