AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52428

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52428.t1 MTR_2g437060 89.367 395 40 1 1 393 1 395 0.0 717
MS.gene52428.t1 MTR_2g437080 76.042 384 82 2 9 392 6 379 0.0 585
MS.gene52428.t1 MTR_2g436400 76.093 389 83 3 1 387 1 381 0.0 585
MS.gene52428.t1 MTR_2g437020 67.089 395 113 4 1 393 1 380 0.0 523
MS.gene52428.t1 MTR_2g436440 65.903 393 125 4 1 392 1 385 0.0 509
MS.gene52428.t1 MTR_2g437030 66.839 386 124 2 9 393 84 466 6.23e-179 506
MS.gene52428.t1 MTR_2g437040 64.888 356 125 0 38 393 25 380 5.14e-166 470
MS.gene52428.t1 MTR_2g437160 52.044 367 169 3 31 391 38 403 9.51e-127 371
MS.gene52428.t1 MTR_2g437170 51.169 385 177 6 18 391 14 398 1.91e-126 370
MS.gene52428.t1 MTR_2g437120 53.279 366 165 4 31 391 27 391 8.95e-126 369
MS.gene52428.t1 MTR_4g119550 52.174 345 162 2 49 392 47 389 6.24e-125 366
MS.gene52428.t1 MTR_2g437150 50.785 382 177 6 18 388 14 395 5.29e-124 364
MS.gene52428.t1 MTR_2g437200 50.131 383 149 4 41 383 18 398 1.10e-122 360
MS.gene52428.t1 MTR_2g437960 51.754 342 162 2 55 393 55 396 4.84e-121 357
MS.gene52428.t1 MTR_2g437960 51.754 342 162 2 55 393 55 396 1.20e-120 357
MS.gene52428.t1 MTR_2g437260 49.288 351 172 4 41 387 22 370 2.92e-119 352
MS.gene52428.t1 MTR_2g437990 50.000 364 173 3 36 391 28 390 3.05e-119 353
MS.gene52428.t1 MTR_2g438010 50.829 362 166 5 36 387 48 407 2.36e-118 350
MS.gene52428.t1 MTR_2g076320 49.727 366 164 4 36 387 28 387 4.42e-118 349
MS.gene52428.t1 MTR_2g437180 48.429 382 189 5 14 391 11 388 2.41e-117 347
MS.gene52428.t1 MTR_2g437130 49.311 363 180 2 29 391 21 379 7.08e-117 345
MS.gene52428.t1 MTR_2g437100 51.902 368 162 6 31 383 28 395 5.44e-116 344
MS.gene52428.t1 MTR_2g437240 46.154 403 171 5 27 391 12 406 5.84e-114 339
MS.gene52428.t1 MTR_2g438020 46.825 378 161 3 52 391 70 445 1.37e-109 330
MS.gene52428.t1 MTR_2g437940 49.041 365 153 6 31 391 27 362 3.95e-109 325
MS.gene52428.t1 MTR_2g436460 46.512 344 181 2 44 386 38 379 8.93e-104 311
MS.gene52428.t1 MTR_2g436370 71.078 204 48 4 1 202 1 195 1.60e-91 274
MS.gene52428.t1 MTR_4g120380 42.049 371 206 3 11 381 9 370 2.20e-91 280
MS.gene52428.t1 MTR_4g119580 42.522 341 192 2 43 381 32 370 9.49e-90 276
MS.gene52428.t1 MTR_2g019840 46.386 332 172 4 54 383 44 371 1.33e-89 275
MS.gene52428.t1 MTR_4g120380 43.020 351 191 3 11 361 9 350 8.31e-87 270
MS.gene52428.t1 MTR_2g019810 44.578 332 178 4 54 383 32 359 1.11e-86 267
MS.gene52428.t1 MTR_2g437090 64.881 168 59 0 226 393 1 168 1.97e-76 234
MS.gene52428.t1 MTR_2g437160 55.721 201 86 1 194 391 112 312 1.37e-71 227
MS.gene52428.t1 MTR_3g450500 32.635 334 217 3 54 381 39 370 3.33e-52 178
MS.gene52428.t1 MTR_4g007490 32.303 356 231 7 33 381 16 368 1.43e-45 161
MS.gene52428.t1 MTR_4g119570 35.743 249 127 1 133 381 14 229 2.09e-45 156
MS.gene52428.t1 MTR_8g080990 29.831 295 204 2 86 377 74 368 5.62e-34 130
MS.gene52428.t1 MTR_8g081000 26.409 337 244 3 48 381 50 385 9.38e-29 116
MS.gene52428.t1 MTR_8g081000 26.409 337 244 3 48 381 50 385 1.42e-28 115
MS.gene52428.t1 MTR_8g081000 26.409 337 244 3 48 381 50 385 1.55e-28 115
MS.gene52428.t1 MTR_2g436380 53.535 99 43 2 226 324 1 96 6.04e-24 100
MS.gene52428.t1 MTR_4g049400 43.307 127 67 2 33 154 25 151 2.00e-23 98.2
MS.gene52428.t1 MTR_3g085240 37.584 149 83 3 27 175 32 170 2.78e-20 89.7
MS.gene52428.t1 MTR_3g085240 46.067 89 31 1 285 373 176 247 9.87e-17 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52428.t1 AT5G07900 36.637 333 203 4 54 380 69 399 5.58e-69 223
MS.gene52428.t1 AT1G21150 29.912 341 231 4 44 378 10 348 2.14e-48 168
MS.gene52428.t1 AT1G21150 30.816 331 221 4 54 378 56 384 2.97e-48 168
MS.gene52428.t1 AT1G21150 30.816 331 221 4 54 378 120 448 9.56e-48 169
MS.gene52428.t1 AT1G61980 28.455 369 219 8 54 381 52 416 1.85e-34 132
MS.gene52428.t1 AT1G61980 28.455 369 219 8 54 381 52 416 1.85e-34 132
MS.gene52428.t1 AT1G61980 28.455 369 219 8 54 381 52 416 1.85e-34 132
MS.gene52428.t1 AT1G61970 26.685 356 208 7 55 366 53 399 1.37e-31 124
MS.gene52428.t1 AT1G61970 26.685 356 208 7 55 366 53 399 1.37e-31 124
MS.gene52428.t1 AT1G61970 26.685 356 208 7 55 366 53 399 1.37e-31 124
MS.gene52428.t1 AT1G61970 26.685 356 208 7 55 366 53 399 1.37e-31 124
MS.gene52428.t1 AT1G61970 26.685 356 208 7 55 366 53 399 1.37e-31 124
MS.gene52428.t1 AT1G61970 26.685 356 208 7 55 366 53 399 1.37e-31 124
MS.gene52428.t1 AT1G61970 26.685 356 208 7 55 366 53 399 1.37e-31 124
MS.gene52428.t1 AT1G62120 28.134 359 205 9 55 368 57 407 4.11e-31 123
MS.gene52428.t1 AT5G64950 28.691 359 233 8 44 388 26 375 4.96e-31 122
MS.gene52428.t1 AT1G61990 27.324 355 206 7 55 368 53 396 1.39e-30 121
MS.gene52428.t1 AT1G61990 27.324 355 206 7 55 368 53 396 1.39e-30 121
MS.gene52428.t1 AT1G62085 27.543 403 196 12 27 342 21 414 1.72e-29 119
MS.gene52428.t1 AT1G62085 27.543 403 196 12 27 342 21 414 1.72e-29 119
MS.gene52428.t1 AT3G46950 31.086 267 173 5 37 298 31 291 3.63e-28 115
MS.gene52428.t1 AT5G23930 27.110 391 203 10 54 371 55 436 1.78e-26 110
MS.gene52428.t1 AT1G62110 27.211 294 194 5 8 296 17 295 4.32e-23 100
MS.gene52428.t1 AT1G61960 29.600 250 160 4 55 296 53 294 2.35e-22 99.0
MS.gene52428.t1 AT1G62010 24.232 293 184 3 87 343 69 359 1.45e-21 96.3
MS.gene52428.t1 AT1G62150 23.733 375 199 9 48 343 52 418 1.32e-20 93.6

Find 85 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACCTCATTCACAATTT+TGG 0.061494 2.3:-54431966 MS.gene52428:CDS
GCAATCTGACAAGGAAATTT+TGG 0.125855 2.3:-54431625 MS.gene52428:CDS
CGACCAACCCCATTTCTTAA+AGG 0.171385 2.3:+54431341 None:intergenic
GGAAAAGAGGGTTAGGGTTT+AGG 0.191466 2.3:+54432057 None:intergenic
GTGAAGGAATTAAAGGATTT+GGG 0.210460 2.3:-54431450 MS.gene52428:CDS
GAAAAGAGGGTTAGGGTTTA+GGG 0.220235 2.3:+54432058 None:intergenic
GGTGAAGGAATTAAAGGATT+TGG 0.236355 2.3:-54431451 MS.gene52428:CDS
TTAATTTAGTGATGAGCTTT+TGG 0.242008 2.3:-54431254 MS.gene52428:CDS
TGACAAAATATCAGGTGTTT+TGG 0.255478 2.3:+54431197 None:intergenic
GTGCAATTTCTTCTCAATAA+TGG 0.259750 2.3:-54431135 MS.gene52428:CDS
TAATCCCTTGAGATAGATTA+AGG 0.266032 2.3:+54432103 None:intergenic
CAAGTTGGTGAAGGAATTAA+AGG 0.289341 2.3:-54431457 MS.gene52428:CDS
TTTCTCATTCCACAAGGTTT+TGG 0.304420 2.3:+54431371 None:intergenic
TTATCTTATAAAGTTGTATC+AGG 0.309342 2.3:-54431016 MS.gene52428:CDS
TGAGAACTGAATCAGGGTTT+TGG 0.309396 2.3:+54431883 None:intergenic
CTTGTAACTGGAGCAAAGTT+TGG 0.321987 2.3:+54431923 None:intergenic
AAGAAATTGAGAACTGAATC+AGG 0.327189 2.3:+54431876 None:intergenic
AAACTTTGGTAACACCCTTT+TGG 0.336536 2.3:+54431776 None:intergenic
CTTGAAACGGAGCTTGTAAC+TGG 0.364053 2.3:+54431911 None:intergenic
TTGGGTCAATCAGTTGGGTT+GGG 0.365374 2.3:-54431235 MS.gene52428:CDS
AAGTTGATGCCTTTAAGAAA+TGG 0.366199 2.3:-54431350 MS.gene52428:CDS
AGTTGATGCCTTTAAGAAAT+GGG 0.371481 2.3:-54431349 MS.gene52428:CDS
AAACTTAATGACAAAATATC+AGG 0.378240 2.3:+54431189 None:intergenic
AAATGGAGAGAAAAGAGAAA+TGG 0.389921 2.3:+54432026 None:intergenic
CAGAAGCGTTGGTGCAGAAA+TGG 0.394609 2.3:+54432009 None:intergenic
GCTTAATTTATCCATTCTTA+AGG 0.397953 2.3:-54431092 MS.gene52428:CDS
CAAACATTAAAAGATTGCTT+AGG 0.402903 2.3:-54431515 MS.gene52428:CDS
GTCAGAAGTAGAAGCGCCTT+TGG 0.405353 2.3:+54431740 None:intergenic
AATGGAGAGAAAAGAGAAAT+GGG 0.410398 2.3:+54432027 None:intergenic
AAAAGAGAAATGGGTAATGT+TGG 0.413194 2.3:+54432036 None:intergenic
AATAGTCCCAACCTATGAAT+TGG 0.421560 2.3:-54431661 MS.gene52428:CDS
TAATGTTGGAAAAGAGGGTT+AGG 0.425634 2.3:+54432050 None:intergenic
TTTGGGTCAATCAGTTGGGT+TGG 0.429067 2.3:-54431236 MS.gene52428:CDS
GGAAGTAGCCATGGTGCCTT+GGG 0.435586 2.3:+54431810 None:intergenic
TTCCCTGCGACCCCACCAAA+AGG 0.439725 2.3:-54431791 MS.gene52428:CDS
GGGAAGTAGCCATGGTGCCT+TGG 0.446977 2.3:+54431809 None:intergenic
AAACATTAAAAGATTGCTTA+GGG 0.465201 2.3:-54431514 MS.gene52428:CDS
CTCAATTTCTTTAGAAACCA+TGG 0.466986 2.3:-54431864 MS.gene52428:CDS
GGGAATGATACGACGTAGTT+GGG 0.467688 2.3:+54431830 None:intergenic
AGGCTTACAGACAAGACGCC+AGG 0.474816 2.3:+54431693 None:intergenic
GAATCTGTACACCAATTCAT+AGG 0.478001 2.3:+54431650 None:intergenic
CTGTACACCAATTCATAGGT+TGG 0.484595 2.3:+54431654 None:intergenic
ATCACAATGCTGATTGAGAA+TGG 0.486666 2.3:-54431549 MS.gene52428:CDS
TGGGAATGATACGACGTAGT+TGG 0.489187 2.3:+54431829 None:intergenic
CAAAGTTTGGAAGCAGATTG+TGG 0.492532 2.3:+54431936 None:intergenic
GATTGCTTAGGGAACATACT+CGG 0.497604 2.3:-54431503 MS.gene52428:CDS
ATGGGTAATGTTGGAAAAGA+GGG 0.501669 2.3:+54432045 None:intergenic
TCAGTTGGGTTGGGATGCTA+TGG 0.506950 2.3:-54431226 MS.gene52428:CDS
TGTACACCAATTCATAGGTT+GGG 0.507173 2.3:+54431655 None:intergenic
TTGGGACTATTTGATTCTTG+AGG 0.509547 2.3:+54431673 None:intergenic
AAAGTTTGGAAGCAGATTGT+GGG 0.511078 2.3:+54431937 None:intergenic
AATGGGTAATGTTGGAAAAG+AGG 0.520798 2.3:+54432044 None:intergenic
AACTTCTCAGACCTTAAGAA+TGG 0.523239 2.3:+54431081 None:intergenic
GGGTCGCAGGGAAGTAGCCA+TGG 0.525873 2.3:+54431801 None:intergenic
TCCCTGCGACCCCACCAAAA+GGG 0.532744 2.3:-54431790 MS.gene52428:CDS
AACTCAAGCTTGCATACACC+AGG 0.537467 2.3:-54430990 MS.gene52428:CDS
GAGGTATGAGACAGCAAAAG+AGG 0.548116 2.3:+54431980 None:intergenic
AGAGGTTGAATCAGAAGCGT+TGG 0.556682 2.3:+54431998 None:intergenic
CGCCAGGGTTCTTACACACA+AGG 0.557000 2.3:+54431709 None:intergenic
ATTGCTTAGGGAACATACTC+GGG 0.568007 2.3:-54431502 MS.gene52428:CDS
CGAGCCCAAAATTGTGAATG+AGG 0.569173 2.3:+54431961 None:intergenic
GTTGATGCCTTTAAGAAATG+GGG 0.573670 2.3:-54431348 MS.gene52428:CDS
CAGATTCTTGCAATCTGACA+AGG 0.575407 2.3:-54431634 MS.gene52428:CDS
TGTTCAAGTTCAACAATACA+TGG 0.576396 2.3:-54432136 MS.gene52428:CDS
CAGAACCTTAATCTATCTCA+AGG 0.578893 2.3:-54432108 MS.gene52428:CDS
TGAAGGAATTAAAGGATTTG+GGG 0.584499 2.3:-54431449 MS.gene52428:CDS
TGACAATCATGTCTTGTCCC+TGG 0.585106 2.3:+54430972 None:intergenic
GACACGAGACATGCTCAAGT+TGG 0.588113 2.3:-54431472 MS.gene52428:CDS
AGAAATTGAGAACTGAATCA+GGG 0.588690 2.3:+54431877 None:intergenic
AATTGCACAACAGTGGCTCG+TGG 0.602758 2.3:+54431150 None:intergenic
ATGCCTTTAAGAAATGGGGT+TGG 0.606718 2.3:-54431344 MS.gene52428:CDS
TGAGATAGATTAAGGTTCTG+TGG 0.615734 2.3:+54432111 None:intergenic
GTTGGGAGTTAGAGAAACCA+TGG 0.615746 2.3:+54431847 None:intergenic
CATCAACAACCAAAACCTTG+TGG 0.615914 2.3:-54431380 MS.gene52428:CDS
AGACATGCTCAAGTTGGTGA+AGG 0.618045 2.3:-54431466 MS.gene52428:CDS
AATGTTGGAAAAGAGGGTTA+GGG 0.620954 2.3:+54432051 None:intergenic
GGCTTACAGACAAGACGCCA+GGG 0.643701 2.3:+54431694 None:intergenic
ATCAACTTTCTCATTCCACA+AGG 0.645223 2.3:+54431365 None:intergenic
GAGAAGAAATTGCACAACAG+TGG 0.646434 2.3:+54431143 None:intergenic
AGAACCTTAATCTATCTCAA+GGG 0.657921 2.3:-54432107 MS.gene52428:CDS
AACCTTGTGTGTAAGAACCC+TGG 0.659854 2.3:-54431711 MS.gene52428:CDS
ACTACGTCGTATCATTCCCA+AGG 0.661929 2.3:-54431826 MS.gene52428:CDS
GTATCATTCCCAAGGCACCA+TGG 0.712393 2.3:-54431818 MS.gene52428:CDS
ATGGATGTTATCATACAGTG+AGG 0.724940 2.3:+54431285 None:intergenic
ACTCAAGCTTGCATACACCA+GGG 0.735651 2.3:-54430989 MS.gene52428:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CACTAAATTAATTTTATCTA+TGG + chr2.3:54431852-54431871 None:intergenic 15.0%
!! AAACATTAAAAGATTGCTTA+GGG - chr2.3:54431601-54431620 MS.gene52428:CDS 20.0%
!! AAACTTAATGACAAAATATC+AGG + chr2.3:54431929-54431948 None:intergenic 20.0%
!! TTATCTTATAAAGTTGTATC+AGG - chr2.3:54432099-54432118 MS.gene52428:CDS 20.0%
!!! AATCATTCAAAAACAACTTT+TGG - chr2.3:54431692-54431711 MS.gene52428:CDS 20.0%
!!! TGATATTTTGTCATTAAGTT+TGG - chr2.3:54431928-54431947 MS.gene52428:CDS 20.0%
! CAAACATTAAAAGATTGCTT+AGG - chr2.3:54431600-54431619 MS.gene52428:CDS 25.0%
! GAGAGAAAAAATTGAAACTT+TGG + chr2.3:54431356-54431375 None:intergenic 25.0%
! GCTTAATTTATCCATTCTTA+AGG - chr2.3:54432023-54432042 MS.gene52428:CDS 25.0%
! TGTCATTAAGTTTGGAAAAA+AGG - chr2.3:54431936-54431955 MS.gene52428:CDS 25.0%
!! CAATCTTTTAATGTTTGAGT+GGG + chr2.3:54431597-54431616 None:intergenic 25.0%
!! TAATTTAGTGATGAGCTTTT+GGG - chr2.3:54431862-54431881 MS.gene52428:CDS 25.0%
!! TTAATTTAGTGATGAGCTTT+TGG - chr2.3:54431861-54431880 MS.gene52428:CDS 25.0%
!!! TTTCAATTTTTTCTCTCCAA+AGG - chr2.3:54431359-54431378 MS.gene52428:CDS 25.0%
AAAAGAGAAATGGGTAATGT+TGG + chr2.3:54431082-54431101 None:intergenic 30.0%
AAATGGAGAGAAAAGAGAAA+TGG + chr2.3:54431092-54431111 None:intergenic 30.0%
AAGAAATTGAGAACTGAATC+AGG + chr2.3:54431242-54431261 None:intergenic 30.0%
AATGGAGAGAAAAGAGAAAT+GGG + chr2.3:54431091-54431110 None:intergenic 30.0%
AGAAATTGAGAACTGAATCA+GGG + chr2.3:54431241-54431260 None:intergenic 30.0%
AGAACCTTAATCTATCTCAA+GGG - chr2.3:54431008-54431027 MS.gene52428:CDS 30.0%
GTGAAGGAATTAAAGGATTT+GGG - chr2.3:54431665-54431684 MS.gene52428:CDS 30.0%
GTGCAATTTCTTCTCAATAA+TGG - chr2.3:54431980-54431999 MS.gene52428:CDS 30.0%
TAATCCCTTGAGATAGATTA+AGG + chr2.3:54431015-54431034 None:intergenic 30.0%
TGAAGGAATTAAAGGATTTG+GGG - chr2.3:54431666-54431685 MS.gene52428:CDS 30.0%
! AGTTGATGCCTTTAAGAAAT+GGG - chr2.3:54431766-54431785 MS.gene52428:CDS 30.0%
! CATACCTCATTCACAATTTT+GGG - chr2.3:54431150-54431169 MS.gene52428:CDS 30.0%
! CTCAATTTCTTTAGAAACCA+TGG - chr2.3:54431251-54431270 MS.gene52428:CDS 30.0%
! GCAATCTTTTAATGTTTGAG+TGG + chr2.3:54431598-54431617 None:intergenic 30.0%
! GTTTAGGGATTGTGATTTTT+GGG + chr2.3:54431045-54431064 None:intergenic 30.0%
! TCATACCTCATTCACAATTT+TGG - chr2.3:54431149-54431168 MS.gene52428:CDS 30.0%
! TGACAAAATATCAGGTGTTT+TGG + chr2.3:54431921-54431940 None:intergenic 30.0%
! TGTTCAAGTTCAACAATACA+TGG - chr2.3:54430979-54430998 MS.gene52428:CDS 30.0%
! TTTAGGGATTGTGATTTTTG+GGG + chr2.3:54431044-54431063 None:intergenic 30.0%
!! AAGTTGATGCCTTTAAGAAA+TGG - chr2.3:54431765-54431784 MS.gene52428:CDS 30.0%
AAAGTTTGGAAGCAGATTGT+GGG + chr2.3:54431181-54431200 None:intergenic 35.0%
AACTTCTCAGACCTTAAGAA+TGG + chr2.3:54432037-54432056 None:intergenic 35.0%
AATAGTCCCAACCTATGAAT+TGG - chr2.3:54431454-54431473 MS.gene52428:CDS 35.0%
AATGGGTAATGTTGGAAAAG+AGG + chr2.3:54431074-54431093 None:intergenic 35.0%
AATGTTGGAAAAGAGGGTTA+GGG + chr2.3:54431067-54431086 None:intergenic 35.0%
ATCAACTTTCTCATTCCACA+AGG + chr2.3:54431753-54431772 None:intergenic 35.0%
ATGGATGTTATCATACAGTG+AGG + chr2.3:54431833-54431852 None:intergenic 35.0%
ATGGGTAATGTTGGAAAAGA+GGG + chr2.3:54431073-54431092 None:intergenic 35.0%
CAGAACCTTAATCTATCTCA+AGG - chr2.3:54431007-54431026 MS.gene52428:CDS 35.0%
GAATCTGTACACCAATTCAT+AGG + chr2.3:54431468-54431487 None:intergenic 35.0%
GGTGAAGGAATTAAAGGATT+TGG - chr2.3:54431664-54431683 MS.gene52428:CDS 35.0%
TAATGTTGGAAAAGAGGGTT+AGG + chr2.3:54431068-54431087 None:intergenic 35.0%
TGAGATAGATTAAGGTTCTG+TGG + chr2.3:54431007-54431026 None:intergenic 35.0%
TGTACACCAATTCATAGGTT+GGG + chr2.3:54431463-54431482 None:intergenic 35.0%
TTGGGACTATTTGATTCTTG+AGG + chr2.3:54431445-54431464 None:intergenic 35.0%
! ATCACAATGCTGATTGAGAA+TGG - chr2.3:54431566-54431585 MS.gene52428:CDS 35.0%
! GCAATCTGACAAGGAAATTT+TGG - chr2.3:54431490-54431509 MS.gene52428:CDS 35.0%
! GGTTTAGGGATTGTGATTTT+TGG + chr2.3:54431046-54431065 None:intergenic 35.0%
! GTTGATGCCTTTAAGAAATG+GGG - chr2.3:54431767-54431786 MS.gene52428:CDS 35.0%
! TTTCTCATTCCACAAGGTTT+TGG + chr2.3:54431747-54431766 None:intergenic 35.0%
!! AAACTTTGGTAACACCCTTT+TGG + chr2.3:54431342-54431361 None:intergenic 35.0%
!! CAAGTTGGTGAAGGAATTAA+AGG - chr2.3:54431658-54431677 MS.gene52428:CDS 35.0%
!! TTAGGGATTGTGATTTTTGG+GGG + chr2.3:54431043-54431062 None:intergenic 35.0%
!!! AATATCAGGTGTTTTGGCAA+TGG + chr2.3:54431915-54431934 None:intergenic 35.0%
ATTGCTTAGGGAACATACTC+GGG - chr2.3:54431613-54431632 MS.gene52428:CDS 40.0%
CAAAGTTTGGAAGCAGATTG+TGG + chr2.3:54431182-54431201 None:intergenic 40.0%
CAGATTCTTGCAATCTGACA+AGG - chr2.3:54431481-54431500 MS.gene52428:CDS 40.0%
CATCAACAACCAAAACCTTG+TGG - chr2.3:54431735-54431754 MS.gene52428:CDS 40.0%
CTGTACACCAATTCATAGGT+TGG + chr2.3:54431464-54431483 None:intergenic 40.0%
CTTGTAACTGGAGCAAAGTT+TGG + chr2.3:54431195-54431214 None:intergenic 40.0%
GAAAAGAGGGTTAGGGTTTA+GGG + chr2.3:54431060-54431079 None:intergenic 40.0%
GAGAAGAAATTGCACAACAG+TGG + chr2.3:54431975-54431994 None:intergenic 40.0%
GATTGCTTAGGGAACATACT+CGG - chr2.3:54431612-54431631 MS.gene52428:CDS 40.0%
! ATGCCTTTAAGAAATGGGGT+TGG - chr2.3:54431771-54431790 MS.gene52428:CDS 40.0%
! TGAGAACTGAATCAGGGTTT+TGG + chr2.3:54431235-54431254 None:intergenic 40.0%
!! AGCTTTTGGGTCAATCAGTT+GGG - chr2.3:54431875-54431894 MS.gene52428:CDS 40.0%
!! GGTTTTGGTGAGTCTTGAAA+CGG + chr2.3:54431220-54431239 None:intergenic 40.0%
!! TTTGGTAACACCCTTTTGGT+GGG + chr2.3:54431338-54431357 None:intergenic 40.0%
AACCTTGTGTGTAAGAACCC+TGG - chr2.3:54431404-54431423 MS.gene52428:CDS 45.0%
AACTCAAGCTTGCATACACC+AGG - chr2.3:54432125-54432144 MS.gene52428:CDS 45.0%
ACTACGTCGTATCATTCCCA+AGG - chr2.3:54431289-54431308 MS.gene52428:CDS 45.0%
ACTCAAGCTTGCATACACCA+GGG - chr2.3:54432126-54432145 MS.gene52428:CDS 45.0%
CGACCAACCCCATTTCTTAA+AGG + chr2.3:54431777-54431796 None:intergenic 45.0%
CGAGCCCAAAATTGTGAATG+AGG + chr2.3:54431157-54431176 None:intergenic 45.0%
CTTGAAACGGAGCTTGTAAC+TGG + chr2.3:54431207-54431226 None:intergenic 45.0%
GAGGTATGAGACAGCAAAAG+AGG + chr2.3:54431138-54431157 None:intergenic 45.0%
GGAAAAGAGGGTTAGGGTTT+AGG + chr2.3:54431061-54431080 None:intergenic 45.0%
GGGAATGATACGACGTAGTT+GGG + chr2.3:54431288-54431307 None:intergenic 45.0%
GTTGGGAGTTAGAGAAACCA+TGG + chr2.3:54431271-54431290 None:intergenic 45.0%
TGGGAATGATACGACGTAGT+TGG + chr2.3:54431289-54431308 None:intergenic 45.0%
TTGGGTCAATCAGTTGGGTT+GGG - chr2.3:54431880-54431899 MS.gene52428:CDS 45.0%
TTTGGGTCAATCAGTTGGGT+TGG - chr2.3:54431879-54431898 MS.gene52428:CDS 45.0%
! AGAGGTTGAATCAGAAGCGT+TGG + chr2.3:54431120-54431139 None:intergenic 45.0%
!! AGACATGCTCAAGTTGGTGA+AGG - chr2.3:54431649-54431668 MS.gene52428:CDS 45.0%
!! CTTTGGTAACACCCTTTTGG+TGG + chr2.3:54431339-54431358 None:intergenic 45.0%
!! GAGCTTTTGGGTCAATCAGT+TGG - chr2.3:54431874-54431893 MS.gene52428:CDS 45.0%
!! TTGGTAACACCCTTTTGGTG+GGG + chr2.3:54431337-54431356 None:intergenic 45.0%
AATTGCACAACAGTGGCTCG+TGG + chr2.3:54431968-54431987 None:intergenic 50.0%
GACACGAGACATGCTCAAGT+TGG - chr2.3:54431643-54431662 MS.gene52428:CDS 50.0%
! GTATCATTCCCAAGGCACCA+TGG - chr2.3:54431297-54431316 MS.gene52428:CDS 50.0%
!! CAGAAGCGTTGGTGCAGAAA+TGG + chr2.3:54431109-54431128 None:intergenic 50.0%
!! GTCAGAAGTAGAAGCGCCTT+TGG + chr2.3:54431378-54431397 None:intergenic 50.0%
!! TCAGTTGGGTTGGGATGCTA+TGG - chr2.3:54431889-54431908 MS.gene52428:CDS 50.0%
AGGCTTACAGACAAGACGCC+AGG + chr2.3:54431425-54431444 None:intergenic 55.0%
CGCCAGGGTTCTTACACACA+AGG + chr2.3:54431409-54431428 None:intergenic 55.0%
GGAAGTAGCCATGGTGCCTT+GGG + chr2.3:54431308-54431327 None:intergenic 55.0%
GGCTTACAGACAAGACGCCA+GGG + chr2.3:54431424-54431443 None:intergenic 55.0%
GGGAAGTAGCCATGGTGCCT+TGG + chr2.3:54431309-54431328 None:intergenic 60.0%
TCCCTGCGACCCCACCAAAA+GGG - chr2.3:54431325-54431344 MS.gene52428:CDS 60.0%
TTCCCTGCGACCCCACCAAA+AGG - chr2.3:54431324-54431343 MS.gene52428:CDS 60.0%
! ACCCTTTTGGTGGGGTCGCA+GGG + chr2.3:54431329-54431348 None:intergenic 60.0%
GGGTCGCAGGGAAGTAGCCA+TGG + chr2.3:54431317-54431336 None:intergenic 65.0%
! CACCCTTTTGGTGGGGTCGC+AGG + chr2.3:54431330-54431349 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 54430978 54432159 54430978 ID=MS.gene52428
chr2.3 mRNA 54430978 54432159 54430978 ID=MS.gene52428.t1;Parent=MS.gene52428
chr2.3 exon 54430978 54432159 54430978 ID=MS.gene52428.t1.exon1;Parent=MS.gene52428.t1
chr2.3 CDS 54430978 54432159 54430978 ID=cds.MS.gene52428.t1;Parent=MS.gene52428.t1
Gene Sequence

>MS.gene52428

ATGTTCAAGTTCAACAATACATGGCGCCACAGAACCTTAATCTATCTCAAGGGATTAACTTACCCCCAAAAATCACAATCCCTAAACCCTAACCCTCTTTTCCAACATTACCCATTTCTCTTTTCTCTCCATTTCTGCACCAACGCTTCTGATTCAACCTCTTTTGCTGTCTCATACCTCATTCACAATTTTGGGCTCGACCCACAATCTGCTTCCAAACTTTGCTCCAGTTACAAGCTCCGTTTCAAGACTCACCAAAACCCTGATTCAGTTCTCAATTTCTTTAGAAACCATGGTTTCTCTAACTCCCAACTACGTCGTATCATTCCCAAGGCACCATGGCTACTTCCCTGCGACCCCACCAAAAGGGTGTTACCAAAGTTTCAATTTTTTCTCTCCAAAGGCGCTTCTACTTCTGACATTGTTAACCTTGTGTGTAAGAACCCTGGCGTCTTGTCTGTAAGCCTCAAGAATCAAATAGTCCCAACCTATGAATTGGTGTACAGATTCTTGCAATCTGACAAGGAAATTTTGGCATTGTTGAATTACAATACAAATTTACTTTGTGATCGTACTGTGCATAATAACATCACAATGCTGATTGAGAATGGAGTGTCCCACTCAAACATTAAAAGATTGCTTAGGGAACATACTCGGGCATTCAAGACACGAGACATGCTCAAGTTGGTGAAGGAATTAAAGGATTTGGGGTTTAATCATTCAAAAACAACTTTTGGAGTAGCATTGATAGCAAAATCATCAACAACCAAAACCTTGTGGAATGAGAAAGTTGATGCCTTTAAGAAATGGGGTTGGTCGAATGAAGATGTTCTTCAAGCATTTAGAAAGCAGCCTCACTGTATGATAACATCCATAGATAAAATTAATTTAGTGATGAGCTTTTGGGTCAATCAGTTGGGTTGGGATGCTATGGCCATTGCCAAAACACCTGATATTTTGTCATTAAGTTTGGAAAAAAGGATCATTCCACGAGCCACTGTTGTGCAATTTCTTCTCAATAATGGTTTGCGAAGTAAGAATTCAAGCTTAATTTATCCATTCTTAAGGTCTGAGAAGTTGTTTCTTGATATGTTTATAAAACGTTTTAAGAATGAGTCTTCTTATCTTATAAAGTTGTATCAGGAAAAACTCAAGCTTGCATACACCAGGGACAAGACATGA
Protein sequence

>MS.gene52428.t1

MFKFNNTWRHRTLIYLKGLTYPQKSQSLNPNPLFQHYPFLFSLHFCTNASDSTSFAVSYLIHNFGLDPQSASKLCSSYKLRFKTHQNPDSVLNFFRNHGFSNSQLRRIIPKAPWLLPCDPTKRVLPKFQFFLSKGASTSDIVNLVCKNPGVLSVSLKNQIVPTYELVYRFLQSDKEILALLNYNTNLLCDRTVHNNITMLIENGVSHSNIKRLLREHTRAFKTRDMLKLVKELKDLGFNHSKTTFGVALIAKSSTTKTLWNEKVDAFKKWGWSNEDVLQAFRKQPHCMITSIDKINLVMSFWVNQLGWDAMAIAKTPDILSLSLEKRIIPRATVVQFLLNNGLRSKNSSLIYPFLRSEKLFLDMFIKRFKNESSYLIKLYQEKLKLAYTRDKT