Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52429.t1 | KEH37286.1 | 96.6 | 238 | 8 | 0 | 1 | 238 | 1 | 238 | 2.70E-85 | 325.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52429.t1 | A0A072V6P3 | 96.6 | 238 | 8 | 0 | 1 | 238 | 1 | 238 | 2.0e-85 | 325.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene52429.t1 | TR | mTERF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52429.t1 | MTR_2g437080 | 96.639 | 238 | 8 | 0 | 1 | 238 | 1 | 238 | 4.34e-169 | 471 |
MS.gene52429.t1 | MTR_2g437060 | 68.163 | 245 | 66 | 2 | 6 | 238 | 9 | 253 | 3.37e-109 | 320 |
MS.gene52429.t1 | MTR_2g437020 | 63.900 | 241 | 76 | 3 | 3 | 238 | 5 | 239 | 3.57e-101 | 299 |
MS.gene52429.t1 | MTR_2g436440 | 66.667 | 219 | 73 | 0 | 20 | 238 | 26 | 244 | 2.97e-99 | 294 |
MS.gene52429.t1 | MTR_2g436400 | 64.831 | 236 | 81 | 1 | 5 | 238 | 10 | 245 | 6.31e-99 | 293 |
MS.gene52429.t1 | MTR_2g437030 | 63.158 | 247 | 81 | 2 | 1 | 238 | 79 | 324 | 1.73e-97 | 292 |
MS.gene52429.t1 | MTR_2g437040 | 62.185 | 238 | 90 | 0 | 1 | 238 | 1 | 238 | 8.83e-96 | 285 |
MS.gene52429.t1 | MTR_2g437120 | 51.389 | 216 | 101 | 2 | 27 | 238 | 37 | 252 | 2.68e-71 | 224 |
MS.gene52429.t1 | MTR_2g436370 | 59.893 | 187 | 73 | 1 | 5 | 189 | 9 | 195 | 3.71e-69 | 211 |
MS.gene52429.t1 | MTR_2g437180 | 50.926 | 216 | 100 | 4 | 27 | 238 | 37 | 250 | 5.10e-63 | 202 |
MS.gene52429.t1 | MTR_2g437260 | 47.032 | 219 | 110 | 3 | 24 | 238 | 18 | 234 | 1.68e-62 | 200 |
MS.gene52429.t1 | MTR_2g437150 | 49.099 | 222 | 103 | 4 | 27 | 238 | 37 | 258 | 2.38e-62 | 200 |
MS.gene52429.t1 | MTR_2g437160 | 47.273 | 220 | 114 | 1 | 21 | 238 | 44 | 263 | 3.53e-62 | 200 |
MS.gene52429.t1 | MTR_2g437990 | 49.091 | 220 | 103 | 3 | 27 | 238 | 32 | 250 | 6.05e-62 | 200 |
MS.gene52429.t1 | MTR_2g437960 | 48.500 | 200 | 100 | 1 | 42 | 238 | 55 | 254 | 4.71e-61 | 197 |
MS.gene52429.t1 | MTR_2g437170 | 48.611 | 216 | 102 | 3 | 32 | 238 | 43 | 258 | 4.96e-61 | 197 |
MS.gene52429.t1 | MTR_2g437960 | 48.500 | 200 | 100 | 1 | 42 | 238 | 55 | 254 | 7.39e-61 | 197 |
MS.gene52429.t1 | MTR_2g437200 | 42.481 | 266 | 110 | 5 | 14 | 238 | 3 | 266 | 1.36e-60 | 196 |
MS.gene52429.t1 | MTR_2g076320 | 46.606 | 221 | 108 | 3 | 27 | 238 | 32 | 251 | 2.19e-59 | 192 |
MS.gene52429.t1 | MTR_2g437130 | 47.465 | 217 | 110 | 2 | 22 | 238 | 27 | 239 | 1.14e-57 | 187 |
MS.gene52429.t1 | MTR_2g438010 | 45.259 | 232 | 109 | 4 | 24 | 238 | 41 | 271 | 1.46e-57 | 188 |
MS.gene52429.t1 | MTR_2g437100 | 49.010 | 202 | 98 | 2 | 42 | 238 | 62 | 263 | 6.16e-57 | 186 |
MS.gene52429.t1 | MTR_4g119550 | 49.020 | 204 | 101 | 2 | 36 | 238 | 47 | 248 | 1.91e-56 | 184 |
MS.gene52429.t1 | MTR_2g437240 | 40.824 | 267 | 113 | 6 | 14 | 238 | 3 | 266 | 5.72e-55 | 181 |
MS.gene52429.t1 | MTR_2g438020 | 40.756 | 238 | 101 | 3 | 39 | 238 | 70 | 305 | 1.18e-51 | 175 |
MS.gene52429.t1 | MTR_2g436460 | 40.909 | 242 | 127 | 3 | 11 | 238 | 5 | 244 | 9.07e-50 | 167 |
MS.gene52429.t1 | MTR_2g019840 | 43.443 | 244 | 129 | 6 | 1 | 238 | 1 | 241 | 1.25e-46 | 159 |
MS.gene52429.t1 | MTR_4g119580 | 42.654 | 211 | 117 | 2 | 30 | 238 | 32 | 240 | 7.28e-46 | 157 |
MS.gene52429.t1 | MTR_4g120380 | 43.902 | 205 | 113 | 1 | 34 | 238 | 38 | 240 | 1.07e-45 | 156 |
MS.gene52429.t1 | MTR_4g120380 | 43.902 | 205 | 113 | 1 | 34 | 238 | 38 | 240 | 4.03e-45 | 156 |
MS.gene52429.t1 | MTR_2g019810 | 44.500 | 200 | 107 | 2 | 41 | 238 | 32 | 229 | 2.24e-44 | 152 |
MS.gene52429.t1 | MTR_2g437940 | 41.667 | 216 | 92 | 4 | 27 | 238 | 37 | 222 | 7.75e-42 | 146 |
MS.gene52429.t1 | MTR_4g049400 | 46.281 | 121 | 60 | 2 | 26 | 141 | 31 | 151 | 2.57e-26 | 102 |
MS.gene52429.t1 | MTR_2g437160 | 43.860 | 114 | 60 | 1 | 21 | 134 | 44 | 153 | 4.05e-22 | 92.8 |
MS.gene52429.t1 | MTR_3g085240 | 38.462 | 143 | 78 | 3 | 21 | 163 | 39 | 171 | 7.21e-22 | 91.3 |
MS.gene52429.t1 | MTR_3g450500 | 29.524 | 210 | 124 | 5 | 41 | 236 | 39 | 238 | 4.98e-21 | 90.9 |
MS.gene52429.t1 | MTR_4g119570 | 39.496 | 119 | 72 | 0 | 120 | 238 | 14 | 132 | 3.00e-20 | 86.3 |
MS.gene52429.t1 | MTR_4g007490 | 27.869 | 244 | 146 | 7 | 5 | 236 | 11 | 236 | 7.45e-20 | 87.4 |
MS.gene52429.t1 | MTR_8g080990 | 32.308 | 195 | 126 | 4 | 35 | 225 | 37 | 229 | 2.34e-16 | 77.4 |
MS.gene52429.t1 | MTR_8g081000 | 30.769 | 156 | 105 | 2 | 73 | 225 | 87 | 242 | 1.45e-13 | 69.7 |
MS.gene52429.t1 | MTR_8g081000 | 30.233 | 172 | 113 | 3 | 57 | 225 | 75 | 242 | 1.50e-13 | 69.7 |
MS.gene52429.t1 | MTR_8g081000 | 30.769 | 156 | 105 | 2 | 73 | 225 | 87 | 242 | 1.63e-13 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52429.t1 | AT5G07900 | 30.542 | 203 | 134 | 4 | 41 | 238 | 69 | 269 | 4.17e-25 | 102 |
MS.gene52429.t1 | AT1G21150 | 29.108 | 213 | 144 | 3 | 31 | 238 | 10 | 220 | 1.30e-24 | 100 |
MS.gene52429.t1 | AT1G21150 | 30.542 | 203 | 134 | 3 | 41 | 238 | 56 | 256 | 1.54e-24 | 100 |
MS.gene52429.t1 | AT3G46950 | 32.727 | 220 | 136 | 6 | 21 | 236 | 31 | 242 | 2.47e-24 | 100 |
MS.gene52429.t1 | AT1G21150 | 30.542 | 203 | 134 | 3 | 41 | 238 | 120 | 320 | 3.69e-24 | 100 |
MS.gene52429.t1 | AT1G62085 | 29.084 | 251 | 159 | 7 | 2 | 236 | 4 | 251 | 2.56e-21 | 92.4 |
MS.gene52429.t1 | AT1G62085 | 29.084 | 251 | 159 | 7 | 2 | 236 | 4 | 251 | 2.56e-21 | 92.4 |
MS.gene52429.t1 | AT1G61980 | 29.439 | 214 | 118 | 6 | 39 | 236 | 50 | 246 | 4.58e-20 | 88.6 |
MS.gene52429.t1 | AT1G61980 | 29.439 | 214 | 118 | 6 | 39 | 236 | 50 | 246 | 4.58e-20 | 88.6 |
MS.gene52429.t1 | AT1G61980 | 29.439 | 214 | 118 | 6 | 39 | 236 | 50 | 246 | 4.58e-20 | 88.6 |
MS.gene52429.t1 | AT1G62150 | 32.308 | 130 | 86 | 1 | 35 | 164 | 52 | 179 | 1.96e-18 | 84.0 |
MS.gene52429.t1 | AT1G61970 | 31.500 | 200 | 126 | 6 | 42 | 236 | 53 | 246 | 2.79e-18 | 83.2 |
MS.gene52429.t1 | AT1G61970 | 31.500 | 200 | 126 | 6 | 42 | 236 | 53 | 246 | 2.79e-18 | 83.2 |
MS.gene52429.t1 | AT1G61970 | 31.500 | 200 | 126 | 6 | 42 | 236 | 53 | 246 | 2.79e-18 | 83.2 |
MS.gene52429.t1 | AT1G61970 | 31.500 | 200 | 126 | 6 | 42 | 236 | 53 | 246 | 2.79e-18 | 83.2 |
MS.gene52429.t1 | AT1G61970 | 31.500 | 200 | 126 | 6 | 42 | 236 | 53 | 246 | 2.79e-18 | 83.2 |
MS.gene52429.t1 | AT1G61970 | 31.500 | 200 | 126 | 6 | 42 | 236 | 53 | 246 | 2.79e-18 | 83.2 |
MS.gene52429.t1 | AT1G61970 | 31.500 | 200 | 126 | 6 | 42 | 236 | 53 | 246 | 2.79e-18 | 83.2 |
MS.gene52429.t1 | AT1G62120 | 30.500 | 200 | 130 | 4 | 42 | 236 | 57 | 252 | 7.31e-18 | 82.4 |
MS.gene52429.t1 | AT1G61990 | 31.527 | 203 | 115 | 6 | 42 | 236 | 53 | 239 | 1.41e-17 | 81.3 |
MS.gene52429.t1 | AT1G61990 | 31.527 | 203 | 115 | 6 | 42 | 236 | 53 | 239 | 1.41e-17 | 81.3 |
MS.gene52429.t1 | AT1G62110 | 27.500 | 200 | 140 | 3 | 42 | 238 | 53 | 250 | 1.49e-17 | 81.6 |
MS.gene52429.t1 | AT1G61960 | 28.000 | 250 | 158 | 8 | 3 | 236 | 4 | 247 | 1.69e-17 | 81.3 |
MS.gene52429.t1 | AT5G23930 | 35.537 | 121 | 76 | 1 | 41 | 161 | 55 | 173 | 3.04e-15 | 74.7 |
MS.gene52429.t1 | AT5G64950 | 25.714 | 210 | 136 | 6 | 31 | 226 | 26 | 229 | 3.55e-11 | 62.8 |
MS.gene52429.t1 | AT1G56380 | 30.088 | 113 | 77 | 1 | 42 | 154 | 28 | 138 | 7.42e-11 | 61.6 |
MS.gene52429.t1 | AT1G56380 | 30.088 | 113 | 77 | 1 | 42 | 154 | 17 | 127 | 7.76e-11 | 61.6 |
Find 56 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATACCTCATCAACAATTT+TGG | 0.080401 | 2.3:-54426097 | MS.gene52429:CDS |
TGAAGGTGGTGGATGAATTA+AGG | 0.202555 | 2.3:-54425589 | MS.gene52429:CDS |
AAAGGGTTTGAGATTGAAAA+TGG | 0.228978 | 2.3:+54426204 | None:intergenic |
GAAAATGGTAATGGGGTTAT+TGG | 0.243519 | 2.3:+54426166 | None:intergenic |
TTTCCTGCGACCCCTCTAAA+AGG | 0.248958 | 2.3:-54425922 | MS.gene52429:CDS |
GTGGATGAATTAAGGGATTT+GGG | 0.278480 | 2.3:-54425581 | MS.gene52429:CDS |
TGAGAACAGAATCAGGGTTT+TGG | 0.311835 | 2.3:+54426014 | None:intergenic |
GGTGGATGAATTAAGGGATT+TGG | 0.320429 | 2.3:-54425582 | MS.gene52429:CDS |
AAGAAATTGAGAACAGAATC+AGG | 0.329672 | 2.3:+54426007 | None:intergenic |
TGAGATTGAAAATGGATCTA+TGG | 0.333993 | 2.3:+54426212 | None:intergenic |
AATGAAGAGAAAATGGTAAT+GGG | 0.355617 | 2.3:+54426158 | None:intergenic |
TATCGTTCCAATCTATGAAT+TGG | 0.356154 | 2.3:-54425792 | MS.gene52429:CDS |
GTGCAGAAATGAAGAGAAAA+TGG | 0.357192 | 2.3:+54426151 | None:intergenic |
CAAATATTTCTAGATTGCTT+AGG | 0.360863 | 2.3:-54425646 | MS.gene52429:CDS |
GAAGGTGGTGGATGAATTAA+GGG | 0.364635 | 2.3:-54425588 | MS.gene52429:CDS |
AAAATGGTAATGGGGTTATT+GGG | 0.394325 | 2.3:+54426167 | None:intergenic |
GGGTATGGTGAGAAAGTAAA+GGG | 0.406633 | 2.3:+54426187 | None:intergenic |
CTATAAACCAATTCATAGAT+TGG | 0.415060 | 2.3:+54425785 | None:intergenic |
GTCAGAGGTAGAAGCACCTT+TGG | 0.417863 | 2.3:+54425871 | None:intergenic |
GAAAGTAGCCACGGTGCCTT+GGG | 0.421775 | 2.3:+54425941 | None:intergenic |
GGAAAGTAGCCACGGTGCCT+TGG | 0.424368 | 2.3:+54425940 | None:intergenic |
AAATATTTCTAGATTGCTTA+GGG | 0.430507 | 2.3:-54425645 | MS.gene52429:CDS |
ATTACATTGTTGCTTCAGAA+TGG | 0.447044 | 2.3:-54425680 | MS.gene52429:CDS |
CTCAATTTCTTTAGAAACCA+TGG | 0.463335 | 2.3:-54425995 | MS.gene52429:CDS |
GGGAATGATACGACGTAGTT+GGG | 0.467688 | 2.3:+54425961 | None:intergenic |
AGATGGTCACTAAATAAAAC+AGG | 0.477887 | 2.3:+54425716 | None:intergenic |
AAATGAAGAGAAAATGGTAA+TGG | 0.484200 | 2.3:+54426157 | None:intergenic |
TGGGAATGATACGACGTAGT+TGG | 0.489187 | 2.3:+54425960 | None:intergenic |
TGGGTATGGTGAGAAAGTAA+AGG | 0.497840 | 2.3:+54426186 | None:intergenic |
GGTAATGGGGTTATTGGGTA+TGG | 0.511895 | 2.3:+54426172 | None:intergenic |
TTTATTTAGTGACCATCTTG+TGG | 0.528406 | 2.3:-54425711 | MS.gene52429:CDS |
CAAAGCTTAGAAGCAAATTG+TGG | 0.530033 | 2.3:+54426067 | None:intergenic |
CAAGCTTACAGACAAGATCC+TGG | 0.534656 | 2.3:+54425823 | None:intergenic |
AAGCTTACAGACAAGATCCT+GGG | 0.540938 | 2.3:+54425824 | None:intergenic |
TTCCTGCGACCCCTCTAAAA+GGG | 0.542437 | 2.3:-54425921 | MS.gene52429:CDS |
CTTGAAACGGAGCTTGTAAG+TGG | 0.546088 | 2.3:+54426042 | None:intergenic |
AAAGCTTAGAAGCAAATTGT+GGG | 0.556435 | 2.3:+54426068 | None:intergenic |
ACTTTATGAGTAAGAACCCC+AGG | 0.563877 | 2.3:-54425841 | MS.gene52429:CDS |
CAAACCCAAAATTGTTGATG+AGG | 0.572702 | 2.3:+54426092 | None:intergenic |
TAGATTCTTGCAATCGCACA+AGG | 0.582615 | 2.3:-54425765 | MS.gene52429:CDS |
CAATCTAGAAATATTTGAGT+CGG | 0.585031 | 2.3:+54425652 | None:intergenic |
AGAAATTGAGAACAGAATCA+GGG | 0.591173 | 2.3:+54426008 | None:intergenic |
ATGAAGAGAAAATGGTAATG+GGG | 0.595101 | 2.3:+54426159 | None:intergenic |
GAGGTATGAAACTGCAAATG+AGG | 0.601875 | 2.3:+54426111 | None:intergenic |
TGGATGAATTAAGGGATTTG+GGG | 0.606794 | 2.3:-54425580 | MS.gene52429:CDS |
TAATGTTATGTGCCACAAGA+TGG | 0.610046 | 2.3:+54425699 | None:intergenic |
CACATGTGTGCAATGTCCTA+CGG | 0.613554 | 2.3:+54425618 | None:intergenic |
GTTGGGAGTTAGAGAAACCA+TGG | 0.615746 | 2.3:+54425978 | None:intergenic |
GGGTCGCAGGAAAGTAGCCA+CGG | 0.625027 | 2.3:+54425932 | None:intergenic |
TGAGGTTGAATCTGAAGTGT+TGG | 0.626308 | 2.3:+54426129 | None:intergenic |
CATAAAGTTAACCATGTCAG+AGG | 0.632724 | 2.3:+54425856 | None:intergenic |
AGGTGCTTCTACCTCTGACA+TGG | 0.645076 | 2.3:-54425867 | MS.gene52429:CDS |
ACTACGTCGTATCATTCCCA+AGG | 0.661929 | 2.3:-54425957 | MS.gene52429:CDS |
AGCTTACAGACAAGATCCTG+GGG | 0.666533 | 2.3:+54425825 | None:intergenic |
GATTGCTTAGGGAACACCGT+AGG | 0.718101 | 2.3:-54425634 | MS.gene52429:CDS |
GTATCATTCCCAAGGCACCG+TGG | 0.787154 | 2.3:-54425949 | MS.gene52429:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATATTTCTAGATTGCTTA+GGG | - | chr2.3:54426119-54426138 | MS.gene52429:CDS | 20.0% |
! | AAATGAAGAGAAAATGGTAA+TGG | + | chr2.3:54425610-54425629 | None:intergenic | 25.0% |
! | AATGAAGAGAAAATGGTAAT+GGG | + | chr2.3:54425609-54425628 | None:intergenic | 25.0% |
! | CAATCTAGAAATATTTGAGT+CGG | + | chr2.3:54426115-54426134 | None:intergenic | 25.0% |
! | CTATAAACCAATTCATAGAT+TGG | + | chr2.3:54425982-54426001 | None:intergenic | 25.0% |
! | GAGAGAAAAAATTGAAACTT+TGG | + | chr2.3:54425874-54425893 | None:intergenic | 25.0% |
!! | AATCCTTCAAAAACAACTTT+TGG | - | chr2.3:54426210-54426229 | MS.gene52429:CDS | 25.0% |
!!! | CAAATATTTCTAGATTGCTT+AGG | - | chr2.3:54426118-54426137 | MS.gene52429:CDS | 25.0% |
!!! | TTTCAATTTTTTCTCTCCAA+AGG | - | chr2.3:54425877-54425896 | MS.gene52429:CDS | 25.0% |
AAAGCTTAGAAGCAAATTGT+GGG | + | chr2.3:54425699-54425718 | None:intergenic | 30.0% | |
AAGAAATTGAGAACAGAATC+AGG | + | chr2.3:54425760-54425779 | None:intergenic | 30.0% | |
AGAAATTGAGAACAGAATCA+GGG | + | chr2.3:54425759-54425778 | None:intergenic | 30.0% | |
AGATGGTCACTAAATAAAAC+AGG | + | chr2.3:54426051-54426070 | None:intergenic | 30.0% | |
TATCGTTCCAATCTATGAAT+TGG | - | chr2.3:54425972-54425991 | MS.gene52429:CDS | 30.0% | |
TGAGATTGAAAATGGATCTA+TGG | + | chr2.3:54425555-54425574 | None:intergenic | 30.0% | |
TTTATTTAGTGACCATCTTG+TGG | - | chr2.3:54426053-54426072 | MS.gene52429:CDS | 30.0% | |
! | AAAGGGTTTGAGATTGAAAA+TGG | + | chr2.3:54425563-54425582 | None:intergenic | 30.0% |
! | ATGAAGAGAAAATGGTAATG+GGG | + | chr2.3:54425608-54425627 | None:intergenic | 30.0% |
! | ATTACATTGTTGCTTCAGAA+TGG | - | chr2.3:54426084-54426103 | MS.gene52429:CDS | 30.0% |
! | CATACCTCATCAACAATTTT+GGG | - | chr2.3:54425668-54425687 | MS.gene52429:CDS | 30.0% |
! | CTCAATTTCTTTAGAAACCA+TGG | - | chr2.3:54425769-54425788 | MS.gene52429:CDS | 30.0% |
! | TCATACCTCATCAACAATTT+TGG | - | chr2.3:54425667-54425686 | MS.gene52429:CDS | 30.0% |
!! | AAAATGGTAATGGGGTTATT+GGG | + | chr2.3:54425600-54425619 | None:intergenic | 30.0% |
!!! | ACACCAAAAGTTGTTTTTGA+AGG | + | chr2.3:54426216-54426235 | None:intergenic | 30.0% |
CAAACCCAAAATTGTTGATG+AGG | + | chr2.3:54425675-54425694 | None:intergenic | 35.0% | |
CAAAGCTTAGAAGCAAATTG+TGG | + | chr2.3:54425700-54425719 | None:intergenic | 35.0% | |
CATAAAGTTAACCATGTCAG+AGG | + | chr2.3:54425911-54425930 | None:intergenic | 35.0% | |
GTGCAGAAATGAAGAGAAAA+TGG | + | chr2.3:54425616-54425635 | None:intergenic | 35.0% | |
GTGGATGAATTAAGGGATTT+GGG | - | chr2.3:54426183-54426202 | MS.gene52429:CDS | 35.0% | |
TAATGTTATGTGCCACAAGA+TGG | + | chr2.3:54426068-54426087 | None:intergenic | 35.0% | |
TGGATGAATTAAGGGATTTG+GGG | - | chr2.3:54426184-54426203 | MS.gene52429:CDS | 35.0% | |
!! | GAAAATGGTAATGGGGTTAT+TGG | + | chr2.3:54425601-54425620 | None:intergenic | 35.0% |
AAGCTTACAGACAAGATCCT+GGG | + | chr2.3:54425943-54425962 | None:intergenic | 40.0% | |
ACTTTATGAGTAAGAACCCC+AGG | - | chr2.3:54425923-54425942 | MS.gene52429:CDS | 40.0% | |
GAGGTATGAAACTGCAAATG+AGG | + | chr2.3:54425656-54425675 | None:intergenic | 40.0% | |
GGGTATGGTGAGAAAGTAAA+GGG | + | chr2.3:54425580-54425599 | None:intergenic | 40.0% | |
GGTGGATGAATTAAGGGATT+TGG | - | chr2.3:54426182-54426201 | MS.gene52429:CDS | 40.0% | |
TAGATTCTTGCAATCGCACA+AGG | - | chr2.3:54425999-54426018 | MS.gene52429:CDS | 40.0% | |
TGGGTATGGTGAGAAAGTAA+AGG | + | chr2.3:54425581-54425600 | None:intergenic | 40.0% | |
! | GCACACATGTGACATTTTGA+AGG | - | chr2.3:54426158-54426177 | MS.gene52429:CDS | 40.0% |
! | TGAGAACAGAATCAGGGTTT+TGG | + | chr2.3:54425753-54425772 | None:intergenic | 40.0% |
! | TGAGGTTGAATCTGAAGTGT+TGG | + | chr2.3:54425638-54425657 | None:intergenic | 40.0% |
! | TTTGGCAACACCCTTTTAGA+GGG | + | chr2.3:54425856-54425875 | None:intergenic | 40.0% |
!! | ATGTGACATTTTGAAGGTGG+TGG | - | chr2.3:54426164-54426183 | MS.gene52429:CDS | 40.0% |
!! | CACATGTGACATTTTGAAGG+TGG | - | chr2.3:54426161-54426180 | MS.gene52429:CDS | 40.0% |
!! | GAAGGTGGTGGATGAATTAA+GGG | - | chr2.3:54426176-54426195 | MS.gene52429:CDS | 40.0% |
!! | GGTTTTGGTCAGTCTTGAAA+CGG | + | chr2.3:54425738-54425757 | None:intergenic | 40.0% |
!! | TGAAGGTGGTGGATGAATTA+AGG | - | chr2.3:54426175-54426194 | MS.gene52429:CDS | 40.0% |
ACTACGTCGTATCATTCCCA+AGG | - | chr2.3:54425807-54425826 | MS.gene52429:CDS | 45.0% | |
AGCTTACAGACAAGATCCTG+GGG | + | chr2.3:54425942-54425961 | None:intergenic | 45.0% | |
CAAGCTTACAGACAAGATCC+TGG | + | chr2.3:54425944-54425963 | None:intergenic | 45.0% | |
CACATGTGTGCAATGTCCTA+CGG | + | chr2.3:54426149-54426168 | None:intergenic | 45.0% | |
CTTGAAACGGAGCTTGTAAG+TGG | + | chr2.3:54425725-54425744 | None:intergenic | 45.0% | |
GGGAATGATACGACGTAGTT+GGG | + | chr2.3:54425806-54425825 | None:intergenic | 45.0% | |
GTTGGGAGTTAGAGAAACCA+TGG | + | chr2.3:54425789-54425808 | None:intergenic | 45.0% | |
TGGGAATGATACGACGTAGT+TGG | + | chr2.3:54425807-54425826 | None:intergenic | 45.0% | |
! | CTTTGGCAACACCCTTTTAG+AGG | + | chr2.3:54425857-54425876 | None:intergenic | 45.0% |
!! | GGTAATGGGGTTATTGGGTA+TGG | + | chr2.3:54425595-54425614 | None:intergenic | 45.0% |
!! | TTGGCAACACCCTTTTAGAG+GGG | + | chr2.3:54425855-54425874 | None:intergenic | 45.0% |
AGGTGCTTCTACCTCTGACA+TGG | - | chr2.3:54425897-54425916 | MS.gene52429:CDS | 50.0% | |
GATTGCTTAGGGAACACCGT+AGG | - | chr2.3:54426130-54426149 | MS.gene52429:CDS | 50.0% | |
TTTCCTGCGACCCCTCTAAA+AGG | - | chr2.3:54425842-54425861 | MS.gene52429:CDS | 50.0% | |
! | TTCCTGCGACCCCTCTAAAA+GGG | - | chr2.3:54425843-54425862 | MS.gene52429:CDS | 50.0% |
!! | GTCAGAGGTAGAAGCACCTT+TGG | + | chr2.3:54425896-54425915 | None:intergenic | 50.0% |
GAAAGTAGCCACGGTGCCTT+GGG | + | chr2.3:54425826-54425845 | None:intergenic | 55.0% | |
!! | GTATCATTCCCAAGGCACCG+TGG | - | chr2.3:54425815-54425834 | MS.gene52429:CDS | 55.0% |
GGAAAGTAGCCACGGTGCCT+TGG | + | chr2.3:54425827-54425846 | None:intergenic | 60.0% | |
GGGTCGCAGGAAAGTAGCCA+CGG | + | chr2.3:54425835-54425854 | None:intergenic | 60.0% | |
!! | CACCCTTTTAGAGGGGTCGC+AGG | + | chr2.3:54425848-54425867 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 54425535 | 54426251 | 54425535 | ID=MS.gene52429 |
chr2.3 | mRNA | 54425535 | 54426251 | 54425535 | ID=MS.gene52429.t1;Parent=MS.gene52429 |
chr2.3 | exon | 54425535 | 54426251 | 54425535 | ID=MS.gene52429.t1.exon1;Parent=MS.gene52429.t1 |
chr2.3 | CDS | 54425535 | 54426251 | 54425535 | ID=cds.MS.gene52429.t1;Parent=MS.gene52429.t1 |
Gene Sequence |
Protein sequence |