AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52430.t1 MTR_2g437150 73.615 379 90 3 1 371 1 377 0.0 557
MS.gene52430.t1 MTR_2g437170 71.867 391 96 4 1 389 1 379 0.0 552
MS.gene52430.t1 MTR_2g437100 72.798 386 96 3 1 382 7 387 0.0 535
MS.gene52430.t1 MTR_2g438010 70.977 348 94 2 1 348 21 361 6.41e-177 499
MS.gene52430.t1 MTR_2g437120 72.701 348 88 2 1 348 1 341 2.48e-173 490
MS.gene52430.t1 MTR_2g437160 66.400 375 114 4 1 369 12 380 2.71e-171 484
MS.gene52430.t1 MTR_2g437960 71.839 348 94 2 1 348 1 344 1.49e-167 475
MS.gene52430.t1 MTR_2g437960 66.838 389 115 4 1 389 1 375 2.91e-167 475
MS.gene52430.t1 MTR_2g437180 65.508 374 116 2 1 374 1 361 3.34e-167 474
MS.gene52430.t1 MTR_2g076320 69.253 348 100 2 1 348 1 341 6.28e-165 468
MS.gene52430.t1 MTR_2g437990 69.253 348 99 3 1 348 1 340 7.89e-165 469
MS.gene52430.t1 MTR_2g437940 67.241 348 78 2 1 348 1 312 1.46e-156 446
MS.gene52430.t1 MTR_2g437200 59.312 349 105 2 35 348 10 356 2.56e-132 385
MS.gene52430.t1 MTR_2g437240 55.968 377 115 4 36 371 19 385 2.14e-129 379
MS.gene52430.t1 MTR_2g438020 53.388 369 135 2 56 389 70 436 7.95e-127 375
MS.gene52430.t1 MTR_2g437130 56.395 344 141 3 31 374 21 355 8.71e-122 358
MS.gene52430.t1 MTR_2g437020 50.000 354 164 5 14 365 4 346 1.05e-107 322
MS.gene52430.t1 MTR_2g437080 53.376 311 135 3 36 346 26 326 3.50e-107 320
MS.gene52430.t1 MTR_2g436440 47.397 365 182 3 27 391 23 377 1.96e-106 319
MS.gene52430.t1 MTR_2g436400 48.680 341 162 3 25 363 21 350 1.14e-104 314
MS.gene52430.t1 MTR_2g437060 51.746 315 142 4 32 346 37 341 5.13e-104 313
MS.gene52430.t1 MTR_2g437030 48.968 339 159 3 34 372 114 438 5.71e-99 302
MS.gene52430.t1 MTR_2g437040 49.074 324 155 3 43 365 32 346 1.93e-95 290
MS.gene52430.t1 MTR_2g437260 47.041 338 167 6 39 374 23 350 4.97e-94 287
MS.gene52430.t1 MTR_4g119550 44.720 322 172 3 52 372 46 362 1.21e-90 278
MS.gene52430.t1 MTR_4g120380 46.865 303 152 3 46 348 37 330 7.42e-86 266
MS.gene52430.t1 MTR_4g119580 44.444 324 170 4 43 365 34 348 4.41e-85 264
MS.gene52430.t1 MTR_4g120380 46.865 303 152 3 46 348 37 330 1.12e-84 264
MS.gene52430.t1 MTR_2g436460 48.333 300 149 3 50 348 40 334 1.64e-84 262
MS.gene52430.t1 MTR_2g019840 37.879 330 189 5 22 345 8 327 3.75e-65 213
MS.gene52430.t1 MTR_2g019810 42.424 297 153 6 59 348 33 318 7.18e-65 211
MS.gene52430.t1 MTR_2g437160 60.897 156 55 1 220 369 134 289 2.49e-57 190
MS.gene52430.t1 MTR_2g437160 68.992 129 35 2 1 129 12 135 1.18e-50 173
MS.gene52430.t1 MTR_4g049400 61.146 157 54 2 1 157 1 150 1.66e-54 180
MS.gene52430.t1 MTR_3g450500 30.189 318 217 3 31 345 12 327 1.62e-45 161
MS.gene52430.t1 MTR_4g007490 30.721 319 209 6 30 345 16 325 8.46e-41 148
MS.gene52430.t1 MTR_2g436370 49.032 155 72 2 43 197 38 185 1.77e-39 140
MS.gene52430.t1 MTR_2g437090 47.143 140 74 0 233 372 1 140 5.48e-39 137
MS.gene52430.t1 MTR_4g119570 39.234 209 91 3 140 348 17 189 2.22e-38 138
MS.gene52430.t1 MTR_8g080990 29.730 259 178 2 89 345 73 329 7.58e-27 110
MS.gene52430.t1 MTR_8g081000 29.231 260 180 2 88 345 85 342 1.29e-26 110
MS.gene52430.t1 MTR_8g081000 29.231 260 180 2 88 345 85 342 1.38e-26 110
MS.gene52430.t1 MTR_8g081000 29.231 260 180 2 88 345 85 342 1.48e-26 110
MS.gene52430.t1 MTR_3g085240 58.750 80 22 1 290 369 174 242 4.08e-20 89.4
MS.gene52430.t1 MTR_3g085240 40.690 145 69 3 36 180 44 171 1.20e-16 79.3
MS.gene52430.t1 MTR_2g436380 60.656 61 24 0 233 293 1 61 1.32e-18 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52430.t1 AT5G07900 30.625 320 215 4 30 346 43 358 2.79e-50 174
MS.gene52430.t1 AT1G21150 32.479 351 225 7 40 381 33 380 1.08e-45 162
MS.gene52430.t1 AT1G21150 32.479 351 225 7 40 381 97 444 3.06e-45 162
MS.gene52430.t1 AT1G21150 33.433 335 214 6 53 381 13 344 5.91e-45 159
MS.gene52430.t1 AT5G64950 27.647 340 224 7 47 367 28 364 6.16e-31 122
MS.gene52430.t1 AT1G61990 28.834 326 184 7 59 348 53 366 2.18e-30 121
MS.gene52430.t1 AT1G61990 28.834 326 184 7 59 348 53 366 2.18e-30 121
MS.gene52430.t1 AT1G61970 27.492 331 193 8 57 348 51 373 5.00e-29 117
MS.gene52430.t1 AT1G61970 27.492 331 193 8 57 348 51 373 5.00e-29 117
MS.gene52430.t1 AT1G61970 27.492 331 193 8 57 348 51 373 5.00e-29 117
MS.gene52430.t1 AT1G61970 27.492 331 193 8 57 348 51 373 5.00e-29 117
MS.gene52430.t1 AT1G61970 27.492 331 193 8 57 348 51 373 5.00e-29 117
MS.gene52430.t1 AT1G61970 27.492 331 193 8 57 348 51 373 5.00e-29 117
MS.gene52430.t1 AT1G61970 27.492 331 193 8 57 348 51 373 5.00e-29 117
MS.gene52430.t1 AT1G61980 27.744 328 192 6 59 348 53 373 4.89e-28 114
MS.gene52430.t1 AT1G61980 27.744 328 192 6 59 348 53 373 4.89e-28 114
MS.gene52430.t1 AT1G61980 27.744 328 192 6 59 348 53 373 4.89e-28 114
MS.gene52430.t1 AT1G62120 27.042 355 202 8 59 362 57 405 5.91e-26 108
MS.gene52430.t1 AT3G46950 28.253 269 182 4 35 302 30 288 6.24e-26 108
MS.gene52430.t1 AT1G61960 30.242 248 166 5 57 302 51 293 2.17e-22 99.0
MS.gene52430.t1 AT1G62110 29.278 263 173 7 45 302 40 294 5.09e-22 97.8
MS.gene52430.t1 AT5G23930 28.519 270 180 6 27 293 22 281 3.30e-20 92.4
MS.gene52430.t1 AT1G62150 28.000 250 170 5 57 302 57 300 8.48e-20 91.3
MS.gene52430.t1 AT1G62085 28.629 248 167 5 59 302 56 297 1.09e-19 90.9
MS.gene52430.t1 AT1G62085 28.629 248 167 5 59 302 56 297 1.09e-19 90.9
MS.gene52430.t1 AT1G62010 25.868 317 182 6 94 362 72 383 8.98e-19 87.8

Find 70 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTTGACGACTGATTT+TGG 0.089239 2.3:-54415403 MS.gene52430:CDS
CAAACAAGACCATCTATATT+TGG 0.180790 2.3:-54415349 MS.gene52430:CDS
TGATTCCTACAACAACTTTC+TGG 0.183403 2.3:+54415989 None:intergenic
TCGTATCTCATCAATAATTT+TGG 0.189747 2.3:-54415829 MS.gene52430:CDS
CAGAAGCTTCTGAGTGAAAT+TGG 0.201963 2.3:+54415904 None:intergenic
TTGGAGGAAGTTAAGGGTTT+AGG 0.213631 2.3:-54415304 MS.gene52430:CDS
AAGCTACTTCGTAAAATTCT+AGG 0.214273 2.3:+54415556 None:intergenic
CTCAGTTATGCAATTTCTTT+TGG 0.217186 2.3:-54414996 MS.gene52430:CDS
ATAACAGAAGCAGGCTTATC+TGG 0.236242 2.3:+54415748 None:intergenic
TGGAGGAAGTTAAGGGTTTA+GGG 0.236533 2.3:-54415303 MS.gene52430:CDS
CATCCTTCAACAACTACTTT+TGG 0.271023 2.3:-54415277 MS.gene52430:CDS
AAAGATTTGATAGCTGATTC+AGG 0.315111 2.3:+54415799 None:intergenic
TAACTCATTGGAGGAAGTTA+AGG 0.330911 2.3:-54415311 MS.gene52430:CDS
GAAGCTTTGAGTGCGAATTT+AGG 0.334811 2.3:+54414683 None:intergenic
AGAAAACATTTGTGACAGTT+TGG 0.337519 2.3:+54415051 None:intergenic
ATTGAAGTCAGCATCAAATA+AGG 0.342231 2.3:+54415139 None:intergenic
ATGTACTCCAATATCGAATT+AGG 0.344018 2.3:+54415461 None:intergenic
AAAGGATTTGATTAACTCAT+TGG 0.346872 2.3:-54415323 MS.gene52430:CDS
TTGTTTGCCTAATTCGATAT+TGG 0.351222 2.3:-54415468 MS.gene52430:CDS
AAGATGTTATTCATGCATTT+CGG 0.356695 2.3:-54415168 MS.gene52430:CDS
TCCTTTGAAAGGACGTTGTT+TGG 0.367637 2.3:+54414661 None:intergenic
GAGAAGTGTTGGTTCAAAAC+AGG 0.368609 2.3:+54415931 None:intergenic
AAGTTGACGTCTTTAAGAAA+TGG 0.368639 2.3:-54415204 MS.gene52430:CDS
AGTTGACGTCTTTAAGAAAT+GGG 0.373920 2.3:-54415203 MS.gene52430:CDS
TCGAAGCCATGTTGAAGAAA+TGG 0.385554 2.3:-54416020 None:intergenic
TCTTATCTCATCGACAAATT+CGG 0.391895 2.3:-54414713 MS.gene52430:CDS
GATTCCTACAACAACTTTCT+GGG 0.392173 2.3:+54415990 None:intergenic
AATTGATATTAGACACAATA+AGG 0.406184 2.3:+54415419 None:intergenic
TTTCTTATAGTTTGGAGAAA+AGG 0.411421 2.3:-54415033 MS.gene52430:CDS
ACCATCTATATTTGGTTCAA+AGG 0.427799 2.3:-54415341 MS.gene52430:CDS
GCAAACAATGACATCCTTGT+TGG 0.429184 2.3:+54415483 None:intergenic
TCAATTGGGTTGGAATTCCT+TGG 0.440659 2.3:-54415080 MS.gene52430:CDS
TCCTTTGAACCAAATATAGA+TGG 0.443491 2.3:+54415340 None:intergenic
AACTCATTGGAGGAAGTTAA+GGG 0.448139 2.3:-54415310 MS.gene52430:CDS
AATTGCACAAAAGCTGCTCT+TGG 0.453065 2.3:+54414633 None:intergenic
ATTCCAAAAGTAGTTGTTGA+AGG 0.457781 2.3:+54415274 None:intergenic
AGCTACTTCGTAAAATTCTA+GGG 0.494414 2.3:+54415557 None:intergenic
TAACAGAAGCAGGCTTATCT+GGG 0.497510 2.3:+54415749 None:intergenic
AGAAGCTTCTGAGTGAAATT+GGG 0.502779 2.3:+54415905 None:intergenic
ATGAGTGTGAAGTGGTGGTA+TGG 0.504331 2.3:+54414744 None:intergenic
TTTGGGTCAATCAATTGGGT+TGG 0.506924 2.3:-54415090 MS.gene52430:CDS
CAAATCTTTCAACTACAAGC+AGG 0.525391 2.3:-54415785 MS.gene52430:CDS
TCCAAACAACGTCCTTTCAA+AGG 0.527373 2.3:-54414662 MS.gene52430:CDS
AAGAAGGTGATAACAGAAGC+AGG 0.527708 2.3:+54415739 None:intergenic
ATTGCTTTGATGGCCAAGAA+AGG 0.530580 2.3:-54415253 MS.gene52430:CDS
CTACTTAATAATTCAAAACA+AGG 0.538944 2.3:+54415517 None:intergenic
ATGAGATACGATGCAGCGAA+TGG 0.541068 2.3:+54415841 None:intergenic
ATCAGAAGAGGAAGCACCGT+TGG 0.542723 2.3:+54415603 None:intergenic
ATTAGACACAATAAGGCGAT+AGG 0.545180 2.3:+54415426 None:intergenic
TGATTCAGATTCAGATGTTG+TGG 0.559545 2.3:+54415879 None:intergenic
TGACAGTTTGGTAAGTGCCA+AGG 0.560015 2.3:+54415063 None:intergenic
TCTTGGAATGATCCTTTGAA+AGG 0.565475 2.3:+54414650 None:intergenic
AAATTGGGAACGAGAAGTGT+TGG 0.565661 2.3:+54415920 None:intergenic
GGATTTGATTAACTCATTGG+AGG 0.570633 2.3:-54415320 MS.gene52430:CDS
AGAAGTGTTGGTTCAAAACA+GGG 0.575132 2.3:+54415932 None:intergenic
CTAGGGTATGCAGTTAACAA+TGG 0.602093 2.3:+54415574 None:intergenic
CAATGGAACAATATCAGAAG+AGG 0.605003 2.3:+54415591 None:intergenic
TTAGACACAATAAGGCGATA+GGG 0.612715 2.3:+54415427 None:intergenic
GTTGACGTCTTTAAGAAATG+GGG 0.614153 2.3:-54415202 MS.gene52430:CDS
TACTTAATAATTCAAAACAA+GGG 0.615001 2.3:+54415518 None:intergenic
AATTGCATAACTGAGGCCCT+CGG 0.616992 2.3:+54415004 None:intergenic
ACGTCTTTAAGAAATGGGGT+TGG 0.618032 2.3:-54415198 MS.gene52430:CDS
GGAGAAAAGGATCATTCCGA+GGG 0.628812 2.3:-54415020 MS.gene52430:CDS
TGGAGAAAAGGATCATTCCG+AGG 0.630921 2.3:-54415021 MS.gene52430:CDS
CAAAAGAAATTGCATAACTG+AGG 0.658684 2.3:+54414997 None:intergenic
CACAGTGAATGAGTGTGAAG+TGG 0.671564 2.3:+54414736 None:intergenic
TAGGTTCTTGAAAACCAACA+AGG 0.701717 2.3:-54415497 MS.gene52430:CDS
AACAGAAGCAGGCTTATCTG+GGG 0.702520 2.3:+54415750 None:intergenic
AGTGAATGAGTGTGAAGTGG+TGG 0.703795 2.3:+54414739 None:intergenic
GGTTGGGAAGAAAGTAACCA+AGG 0.719556 2.3:+54415664 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTAATAATTCAAAACAA+GGG + chr2.3:54415122-54415141 None:intergenic 15.0%
!! AATTGATATTAGACACAATA+AGG + chr2.3:54415221-54415240 None:intergenic 20.0%
!! CTACTTAATAATTCAAAACA+AGG + chr2.3:54415123-54415142 None:intergenic 20.0%
!!! ACAAATGTTTTCTTATAGTT+TGG - chr2.3:54415596-54415615 MS.gene52430:CDS 20.0%
!!! CTTGTTTTGAATTATTAAGT+AGG - chr2.3:54415121-54415140 MS.gene52430:CDS 20.0%
! AAAGGATTTGATTAACTCAT+TGG - chr2.3:54415314-54415333 MS.gene52430:CDS 25.0%
! AAATTCCGCTAATTAATGAA+TGG + chr2.3:54415835-54415854 None:intergenic 25.0%
! AAGATGTTATTCATGCATTT+CGG - chr2.3:54415469-54415488 MS.gene52430:CDS 25.0%
! AAGGTATGAGTAAAAAACTT+TGG - chr2.3:54415403-54415422 MS.gene52430:CDS 25.0%
! AATGAAAATTGCATACACAA+TGG - chr2.3:54415795-54415814 MS.gene52430:CDS 25.0%
! AGGTATGAGTAAAAAACTTT+GGG - chr2.3:54415404-54415423 MS.gene52430:CDS 25.0%
! GATAGAAAAAATTGGAACTT+TGG + chr2.3:54415015-54415034 None:intergenic 25.0%
! TTTCTTATAGTTTGGAGAAA+AGG - chr2.3:54415604-54415623 MS.gene52430:CDS 25.0%
!! ATTTTCTCAGAATAAGCAAA+TGG + chr2.3:54415705-54415724 None:intergenic 25.0%
!! TCGTATCTCATCAATAATTT+TGG - chr2.3:54414808-54414827 MS.gene52430:intron 25.0%
!! TGATTCGTTAATGAGTTTTT+GGG - chr2.3:54415530-54415549 MS.gene52430:CDS 25.0%
!!! CAAGTTTGTTTTCAGATTTA+AGG - chr2.3:54415734-54415753 MS.gene52430:CDS 25.0%
!!! TTCCAATTTTTTCTATCCAA+CGG - chr2.3:54415018-54415037 MS.gene52430:CDS 25.0%
!!! TTGATTCGTTAATGAGTTTT+TGG - chr2.3:54415529-54415548 MS.gene52430:CDS 25.0%
!!! TTTTTTACTCATACCTTTCT+TGG + chr2.3:54415400-54415419 None:intergenic 25.0%
AAGCTACTTCGTAAAATTCT+AGG + chr2.3:54415084-54415103 None:intergenic 30.0%
AGAAAACATTTGTGACAGTT+TGG + chr2.3:54415589-54415608 None:intergenic 30.0%
AGCTACTTCGTAAAATTCTA+GGG + chr2.3:54415083-54415102 None:intergenic 30.0%
ATGTACTCCAATATCGAATT+AGG + chr2.3:54415179-54415198 None:intergenic 30.0%
ATTCCAAAAGTAGTTGTTGA+AGG + chr2.3:54415366-54415385 None:intergenic 30.0%
ATTGAAGTCAGCATCAAATA+AGG + chr2.3:54415501-54415520 None:intergenic 30.0%
CAAAAGAAATTGCATAACTG+AGG + chr2.3:54415643-54415662 None:intergenic 30.0%
CAAACAAGACCATCTATATT+TGG - chr2.3:54415288-54415307 MS.gene52430:CDS 30.0%
TCCTTTGAACCAAATATAGA+TGG + chr2.3:54415300-54415319 None:intergenic 30.0%
TCTTATCTCATCGACAAATT+CGG - chr2.3:54415924-54415943 MS.gene52430:CDS 30.0%
TTGTTTGCCTAATTCGATAT+TGG - chr2.3:54415169-54415188 MS.gene52430:CDS 30.0%
! AAACAGGGTTGTTGAATTTT+AGG + chr2.3:54414693-54414712 None:intergenic 30.0%
! AAAGATTTGATAGCTGATTC+AGG + chr2.3:54414841-54414860 None:intergenic 30.0%
! AACAGGGTTGTTGAATTTTA+GGG + chr2.3:54414692-54414711 None:intergenic 30.0%
! AAGTTGACGTCTTTAAGAAA+TGG - chr2.3:54415433-54415452 MS.gene52430:CDS 30.0%
! ACCATCTATATTTGGTTCAA+AGG - chr2.3:54415296-54415315 MS.gene52430:CDS 30.0%
! ACTTTGGCAATAACATTTTG+TGG + chr2.3:54414999-54415018 None:intergenic 30.0%
! AGTTGACGTCTTTAAGAAAT+GGG - chr2.3:54415434-54415453 MS.gene52430:CDS 30.0%
! ATGCAATTTCTTTTGGTGAA+AGG - chr2.3:54415648-54415667 MS.gene52430:CDS 30.0%
! CTCAGTTATGCAATTTCTTT+TGG - chr2.3:54415641-54415660 MS.gene52430:CDS 30.0%
! CTTTGGCAATAACATTTTGT+GGG + chr2.3:54414998-54415017 None:intergenic 30.0%
! TTTGGCAATAACATTTTGTG+GGG + chr2.3:54414997-54415016 None:intergenic 30.0%
!! AAAACCATGGTTTTTGAAGA+AGG + chr2.3:54414917-54414936 None:intergenic 30.0%
!! ATCAATTTGACGACTGATTT+TGG - chr2.3:54415234-54415253 MS.gene52430:CDS 30.0%
!! GTTTGTTTTCAGATTTAAGG+AGG - chr2.3:54415737-54415756 MS.gene52430:CDS 30.0%
!!! AGTTTTTGGGTCAATCAATT+GGG - chr2.3:54415543-54415562 MS.gene52430:CDS 30.0%
!!! TACTTTTGGAATTGCTTTGA+TGG - chr2.3:54415374-54415393 MS.gene52430:CDS 30.0%
AACTCATTGGAGGAAGTTAA+GGG - chr2.3:54415327-54415346 MS.gene52430:CDS 35.0%
AGAAGCTTCTGAGTGAAATT+GGG + chr2.3:54414735-54414754 None:intergenic 35.0%
ATCACCTTCTTCAAAAACCA+TGG - chr2.3:54414910-54414929 MS.gene52430:intron 35.0%
ATTAGACACAATAAGGCGAT+AGG + chr2.3:54415214-54415233 None:intergenic 35.0%
CAAATCTTTCAACTACAAGC+AGG - chr2.3:54414852-54414871 MS.gene52430:intron 35.0%
CAATGGAACAATATCAGAAG+AGG + chr2.3:54415049-54415068 None:intergenic 35.0%
CACCGTTGGATAGAAAAAAT+TGG + chr2.3:54415023-54415042 None:intergenic 35.0%
GATTCCTACAACAACTTTCT+GGG + chr2.3:54414650-54414669 None:intergenic 35.0%
GCATACACAATGGAAAACAA+TGG - chr2.3:54415805-54415824 MS.gene52430:CDS 35.0%
GCATGCCATTCATTAATTAG+CGG - chr2.3:54415827-54415846 MS.gene52430:CDS 35.0%
GGATTTGATTAACTCATTGG+AGG - chr2.3:54415317-54415336 MS.gene52430:CDS 35.0%
TAACTCATTGGAGGAAGTTA+AGG - chr2.3:54415326-54415345 MS.gene52430:CDS 35.0%
TAGGTTCTTGAAAACCAACA+AGG - chr2.3:54415140-54415159 MS.gene52430:CDS 35.0%
TCTTGGAATGATCCTTTGAA+AGG + chr2.3:54415990-54416009 None:intergenic 35.0%
TGATTCAGATTCAGATGTTG+TGG + chr2.3:54414761-54414780 None:intergenic 35.0%
TGATTCCTACAACAACTTTC+TGG + chr2.3:54414651-54414670 None:intergenic 35.0%
TTAGACACAATAAGGCGATA+GGG + chr2.3:54415213-54415232 None:intergenic 35.0%
! CAATAACATTTTGTGGGGTT+GGG + chr2.3:54414992-54415011 None:intergenic 35.0%
! CATCCTTCAACAACTACTTT+TGG - chr2.3:54415360-54415379 MS.gene52430:CDS 35.0%
! GTTGACGTCTTTAAGAAATG+GGG - chr2.3:54415435-54415454 MS.gene52430:CDS 35.0%
! TTTTCCCAGAAAGTTGTTGT+AGG - chr2.3:54414643-54414662 MS.gene52430:CDS 35.0%
!! AGAAGTGTTGGTTCAAAACA+GGG + chr2.3:54414708-54414727 None:intergenic 35.0%
!! TCATCATCAAAAAAGCACCT+TGG - chr2.3:54414956-54414975 MS.gene52430:intron 35.0%
!!! GAGTTTTTGGGTCAATCAAT+TGG - chr2.3:54415542-54415561 MS.gene52430:CDS 35.0%
AAGAAGGTGATAACAGAAGC+AGG + chr2.3:54414901-54414920 None:intergenic 40.0%
AATTGCACAAAAGCTGCTCT+TGG + chr2.3:54416007-54416026 None:intergenic 40.0%
ATAACAGAAGCAGGCTTATC+TGG + chr2.3:54414892-54414911 None:intergenic 40.0%
CAGAAGCTTCTGAGTGAAAT+TGG + chr2.3:54414736-54414755 None:intergenic 40.0%
CTAGGGTATGCAGTTAACAA+TGG + chr2.3:54415066-54415085 None:intergenic 40.0%
GCAAACAATGACATCCTTGT+TGG + chr2.3:54415157-54415176 None:intergenic 40.0%
TAACAGAAGCAGGCTTATCT+GGG + chr2.3:54414891-54414910 None:intergenic 40.0%
TCCAAACAACGTCCTTTCAA+AGG - chr2.3:54415975-54415994 MS.gene52430:CDS 40.0%
TGGAGGAAGTTAAGGGTTTA+GGG - chr2.3:54415334-54415353 MS.gene52430:CDS 40.0%
TGTTGTCGTGTGAAAAACCA+TGG + chr2.3:54414930-54414949 None:intergenic 40.0%
TTGGAGGAAGTTAAGGGTTT+AGG - chr2.3:54415333-54415352 MS.gene52430:CDS 40.0%
TTTGGGTCAATCAATTGGGT+TGG - chr2.3:54415547-54415566 MS.gene52430:CDS 40.0%
! AAATTGGGAACGAGAAGTGT+TGG + chr2.3:54414720-54414739 None:intergenic 40.0%
! ACGTCTTTAAGAAATGGGGT+TGG - chr2.3:54415439-54415458 MS.gene52430:CDS 40.0%
! ATTGCTTTGATGGCCAAGAA+AGG - chr2.3:54415384-54415403 MS.gene52430:CDS 40.0%
! GCAATAACATTTTGTGGGGT+TGG + chr2.3:54414993-54415012 None:intergenic 40.0%
! TCCTTTGAAAGGACGTTGTT+TGG + chr2.3:54415979-54415998 None:intergenic 40.0%
! TGGTATGGACTAACAAGCTA+AGG + chr2.3:54415881-54415900 None:intergenic 40.0%
!! GAAGCTTTGAGTGCGAATTT+AGG + chr2.3:54415957-54415976 None:intergenic 40.0%
!! GAGAAGTGTTGGTTCAAAAC+AGG + chr2.3:54414709-54414728 None:intergenic 40.0%
!! TCAATTGGGTTGGAATTCCT+TGG - chr2.3:54415557-54415576 MS.gene52430:CDS 40.0%
AACAGAAGCAGGCTTATCTG+GGG + chr2.3:54414890-54414909 None:intergenic 45.0%
AATTGCATAACTGAGGCCCT+CGG + chr2.3:54415636-54415655 None:intergenic 45.0%
AGTGAATGAGTGTGAAGTGG+TGG + chr2.3:54415901-54415920 None:intergenic 45.0%
ATGAGATACGATGCAGCGAA+TGG + chr2.3:54414799-54414818 None:intergenic 45.0%
ATGAGTGTGAAGTGGTGGTA+TGG + chr2.3:54415896-54415915 None:intergenic 45.0%
CACAGTGAATGAGTGTGAAG+TGG + chr2.3:54415904-54415923 None:intergenic 45.0%
GGAGAAAAGGATCATTCCGA+GGG - chr2.3:54415617-54415636 MS.gene52430:CDS 45.0%
GGTTGGGAAGAAAGTAACCA+AGG + chr2.3:54414976-54414995 None:intergenic 45.0%
TGACAGTTTGGTAAGTGCCA+AGG + chr2.3:54415577-54415596 None:intergenic 45.0%
TGGAGAAAAGGATCATTCCG+AGG - chr2.3:54415616-54415635 MS.gene52430:CDS 45.0%
!! ATCAGAAGAGGAAGCACCGT+TGG + chr2.3:54415037-54415056 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 54414625 54416034 54414625 ID=MS.gene52430
chr2.3 mRNA 54414625 54416034 54414625 ID=MS.gene52430.t1;Parent=MS.gene52430
chr2.3 exon 54414990 54416034 54414990 ID=MS.gene52430.t1.exon1;Parent=MS.gene52430.t1
chr2.3 CDS 54414990 54416034 54414990 ID=cds.MS.gene52430.t1;Parent=MS.gene52430.t1
chr2.3 exon 54414625 54414767 54414625 ID=MS.gene52430.t1.exon2;Parent=MS.gene52430.t1
chr2.3 CDS 54414625 54414767 54414625 ID=cds.MS.gene52430.t1;Parent=MS.gene52430.t1
Gene Sequence

>MS.gene52430

ATGTTGAAGAAATGGTTTTTTTCCCAGAAAGTTGTTGTAGGAATCATCACAGCAAAATCAACAACCCTAAAATTCAACAACCCTGTTTTGAACCAACACTTCTCGTTCCCAATTTCACTCAGAAGCTTCTGCACCACAACATCTGAATCTGAATCAGAATCAGTCACAAATCCATTCGCTGCATCGTATCTCATCAATAATTTTGGTTTCACTCCTGAATCAGCTATCAAATCTTTCAACTACAAGCAGGTTCGTTTCAATACCCCAGATAAGCCTGCTTCTGTTATCACCTTCTTCAAAAACCATGGTTTTTCACACGACAACATACGCATCATCATCAAAAAAGCACCTTGGTTACTTTCTTCCCAACCCCACAAAATGTTATTGCCAAAGTTCCAATTTTTTCTATCCAACGGTGCTTCCTCTTCTGATATTGTTCCATTGTTAACTGCATACCCTAGAATTTTACGAAGTAGCTTGAAGAAACTAATAATCCCTTGTTTTGAATTATTAAGTAGGTTCTTGAAAACCAACAAGGATGTCATTGTTTGCCTAATTCGATATTGGAGTACATTTTCTACTAATCCCTATCGCCTTATTGTGTCTAATATCAATTTGACGACTGATTTTGGAGTTTCTGATTCTATCATCGCTAATTTGCTTCAAACAAGACCATCTATATTTGGTTCAAAGGATTTGATTAACTCATTGGAGGAAGTTAAGGGTTTAGGGTTTCATCCTTCAACAACTACTTTTGGAATTGCTTTGATGGCCAAGAAAGGTATGAGTAAAAAACTTTGGGATGAGAAAGTTGACGTCTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTATTCATGCATTTCGGATGCAGCCTTATTTGATGCTGACTTCAATTGATAAGATTGATTCGTTAATGAGTTTTTGGGTCAATCAATTGGGTTGGAATTCCTTGGCACTTACCAAACTGTCACAAATGTTTTCTTATAGTTTGGAGAAAAGGATCATTCCGAGGGCCTCAGTTATGCAATTTCTTTTGGTGAAAGGTTTGCGAGAAAAAAATGCAAGCTTAGTTGCACCATTTGCTTATTCTGAGAAAATATTCTTAAGCAAGTTTGTTTTCAGATTTAAGGAGGAGTCTGATTATCTATTAAAGCTATATGAGAGAAAAAATGAAAATTGCATACACAATGGAAAACAATGGCATGCCATTCATTAATTAGCGGAATTTCATAATCTTCTCTTGAAATGTAACCTTAGCTTGTTAGTCCATACCACCACTTCACACTCATTCACTGTGTCTTATCTCATCGACAAATTCGGATTCTCGCCTAAATTCGCACTCAAAGCTTCCAAACAACGTCCTTTCAAAGGATCATTCCAAGAGCAGCTTTTGTGCAATTTCTTCTGA
Protein sequence

>MS.gene52430.t1

MLKKWFFSQKVVVGIITAKSTTLKFNNPVLNQHFSFPISLRSFCTTTSESESESVTNPFAASYLINNFGFTPESAIKSFNYKQVRFNTPDKPASVITFFKNHGFSHDNIRIIIKKAPWLLSSQPHKMLLPKFQFFLSNGASSSDIVPLLTAYPRILRSSLKKLIIPCFELLSRFLKTNKDVIVCLIRYWSTFSTNPYRLIVSNINLTTDFGVSDSIIANLLQTRPSIFGSKDLINSLEEVKGLGFHPSTTTFGIALMAKKGMSKKLWDEKVDVFKKWGWSDEDVIHAFRMQPYLMLTSIDKIDSLMSFWVNQLGWNSLALTKLSQMFSYSLEKRIIPRASVMQFLLVKVHTTTSHSFTVSYLIDKFGFSPKFALKASKQRPFKGSFQEQLLCNFF