AlfalfaGEDB | MS.gene52436

M. sativa cultivar XinJiangDaYe / MS.gene52436

KEGG: K08065
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00808.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52436.t1	KEH15995.1	98.6	138	2	0	1	138	1	138	1.90E-70	275

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52436.t1	O82248	82.5	97	17	0	18	114	51	147	1.3e-40	167.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52436.t1	A0A072TR10	98.6	138	2	0	1	138	1	138	1.4e-70	275.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene52436.t1	TF	NF-YB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52436.t1	MTR_0392s0020	98.551	138	2	0	1	138	1	138	4.94e-100	283
MS.gene52436.t1	MTR_4g119500	86.614	127	12	4	1	122	2	128	2.76e-72	212
MS.gene52436.t1	MTR_1g088860	79.208	101	21	0	12	112	30	130	1.12e-58	180
MS.gene52436.t1	MTR_4g133938	62.698	126	43	2	3	128	6	127	1.53e-51	160
MS.gene52436.t1	MTR_1g072790	60.317	126	42	2	7	132	22	139	6.91e-51	160
MS.gene52436.t1	MTR_2g026710	66.667	108	32	1	9	112	4	111	3.02e-50	158
MS.gene52436.t1	MTR_7g061270	60.000	115	42	1	16	130	24	134	4.22e-50	157
MS.gene52436.t1	MTR_7g100650	60.000	115	42	1	16	130	24	134	6.92e-50	157
MS.gene52436.t1	MTR_8g093920	66.019	103	35	0	17	119	39	141	1.18e-49	158
MS.gene52436.t1	MTR_1g083070	69.697	99	30	0	18	116	4	102	1.12e-48	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52436.t1	AT2G47810	67.176	131	25	1	4	116	19	149	8.12e-58	177
MS.gene52436.t1	AT4G14540	61.404	114	44	0	6	119	9	122	1.23e-51	161
MS.gene52436.t1	AT2G38880	58.594	128	47	1	7	128	10	137	2.42e-51	160
MS.gene52436.t1	AT2G38880	58.594	128	47	1	7	128	10	137	2.88e-51	159
MS.gene52436.t1	AT2G38880	58.594	128	47	1	7	128	10	137	2.88e-51	159
MS.gene52436.t1	AT2G38880	58.594	128	47	1	7	128	10	137	2.88e-51	159
MS.gene52436.t1	AT3G53340	62.609	115	39	1	16	130	27	137	1.22e-50	159
MS.gene52436.t1	AT3G53340	62.609	115	39	1	16	130	27	137	1.22e-50	159
MS.gene52436.t1	AT5G47640	61.207	116	45	0	17	132	26	141	3.56e-50	158
MS.gene52436.t1	AT2G37060	55.639	133	47	2	6	130	10	138	7.22e-50	157

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Find 31 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTTGATAACTTTGG+AGG	0.516859	2.3:-54318622	MS.gene52436:CDS
AATAATCAAGAAATTAGAGG+AGG	0.649585	2.3:-54318274	MS.gene52436:CDS
ACTAATAATCAAGAAATTAG+AGG	0.408687	2.3:-54318277	MS.gene52436:CDS
AGCTTCGGAGAAATGCAGGA+AGG	0.709567	2.3:-54318428	MS.gene52436:CDS
AGTTCCTCTAACGACAATGG+CGG	0.733992	2.3:-54318598	MS.gene52436:CDS
ATCCGACCAACATTGGCTAT+TGG	0.352636	2.3:+54318550	None:intergenic
ATGAAATTTATAGAGGTGTT+AGG	0.374658	2.3:-54318231	MS.gene52436:CDS
ATTATGCCGAGCCAATGAGA+AGG	0.662962	2.3:-54318342	MS.gene52436:CDS
CAAGTACCTTCTCATTGGCT+CGG	0.563177	2.3:+54318336	None:intergenic
CAATGAGAAGGTACTTGCAT+AGG	0.552859	2.3:-54318330	MS.gene52436:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAGAGATGAAATTTATAG+AGG	-	chr2.3:54318606-54318625	MS.gene52436:CDS	30.0%
TAAATTTCATCTCTCTCTTG+AGG	+	chr2.3:54318603-54318622	None:intergenic	30.0%
CGTTACGAAGCTTATGAACT+CGG	+	chr2.3:54318391-54318410	None:intergenic	40.0%
CTATGCAAGTACCTTCTCAT+TGG	+	chr2.3:54318516-54318535	None:intergenic	40.0%
CTTCATTATCCGACCAACAT+TGG	+	chr2.3:54318304-54318323	None:intergenic	40.0%
GAAAGGAGAAAGACTGTGAA+TGG	-	chr2.3:54318438-54318457	MS.gene52436:CDS	40.0%
TTCCAATAGCCAATGTTGGT+CGG	-	chr2.3:54318292-54318311	MS.gene52436:CDS	40.0%
TTCGATACTTTCGCATTCTG+AGG	+	chr2.3:54318336-54318355	None:intergenic	40.0%
TTGCTTCCAATAGCCAATGT+TGG	-	chr2.3:54318288-54318307	MS.gene52436:CDS	40.0%
AGTTCCTCTAACGACAATGG+CGG	-	chr2.3:54318246-54318265	MS.gene52436:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	54318225	54318641	54318225	ID=MS.gene52436
chr2.3	mRNA	54318225	54318641	54318225	ID=MS.gene52436.t1;Parent=MS.gene52436
chr2.3	exon	54318225	54318641	54318225	ID=MS.gene52436.t1.exon1;Parent=MS.gene52436.t1
chr2.3	CDS	54318225	54318641	54318225	ID=cds.MS.gene52436.t1;Parent=MS.gene52436.t1

Gene Sequence

>MS.gene52436

ATGGTTGATAACTTTGGAGGTAGTTCCTCTAACGACAATGGCGGTATCAAGGAACAAGACAGGTTGCTTCCAATAGCCAATGTTGGTCGGATAATGAAGCAGATTTTGCCTCAGAATGCGAAAGTATCGAAGGAAGCAAAGGAAACAATGCAAGAATGTGTGTCCGAGTTCATAAGCTTCGTAACGAGTGAAGCTTCGGAGAAATGCAGGAAGGAAAGGAGAAAGACTGTGAATGGTGATGATATTTGTTGGGCTTTAGCAACACTTGGTTTTGATGATTATGCCGAGCCAATGAGAAGGTACTTGCATAGGTATAGAGAGTTAGAAGTTGATAAAATTAATACTAATAATCAAGAAATTAGAGGAGGAAATAGTCCTCAAGAGAGAGATGAAATTTATAGAGGTGTTAGGCTGTAA

Protein sequence

>MS.gene52436.t1

MVDNFGGSSSNDNGGIKEQDRLLPIANVGRIMKQILPQNAKVSKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYRELEVDKINTNNQEIRGGNSPQERDEIYRGVRL