AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52462

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52462.t1 MTR_0558s0020 86.486 296 39 1 1 295 1 296 0.0 540
MS.gene52462.t1 MTR_1g083640 83.099 284 32 1 1 268 1 284 9.70e-172 492
MS.gene52462.t1 MTR_8g446020 73.898 295 38 1 1 295 1 256 5.39e-152 441
MS.gene52462.t1 MTR_2g014100 82.449 245 34 1 1 236 1 245 1.29e-142 417
MS.gene52462.t1 MTR_6g090505 82.700 237 41 0 65 301 1 237 6.85e-140 414
MS.gene52462.t1 MTR_6g090505 66.667 102 7 2 396 495 230 306 2.89e-33 132
MS.gene52462.t1 MTR_6g090505 77.551 49 11 0 567 615 314 362 1.95e-11 66.6
MS.gene52462.t1 MTR_0337s0040 72.692 260 31 2 1 259 1 221 9.37e-125 370
MS.gene52462.t1 MTR_3g008240 83.251 203 33 1 1 202 1 203 5.97e-117 349
MS.gene52462.t1 MTR_4g040430 83.168 202 30 1 1 202 1 198 3.97e-116 347
MS.gene52462.t1 MTR_5g071590 73.889 180 34 2 1 167 1 180 2.18e-89 277
MS.gene52462.t1 MTR_1g055240 88.028 142 17 0 91 232 3 144 2.22e-86 268
MS.gene52462.t1 MTR_0019s0290 82.237 152 27 0 82 233 9 160 1.49e-85 266
MS.gene52462.t1 MTR_0337s0060 59.664 238 22 2 447 684 21 184 7.22e-85 267
MS.gene52462.t1 MTR_1281s0010 79.817 109 22 0 19 127 1 109 1.21e-55 185
MS.gene52462.t1 MTR_4g133495 73.554 121 29 1 576 693 88 208 1.26e-54 189
MS.gene52462.t1 MTR_4g133340 73.554 121 29 1 576 693 88 208 1.26e-54 189
MS.gene52462.t1 MTR_3g028680 84.211 76 12 0 618 693 1 76 1.41e-37 139
MS.gene52462.t1 MTR_6g051425 30.818 318 189 6 40 341 22 324 2.59e-37 142
MS.gene52462.t1 MTR_2g067090 80.556 72 14 0 621 692 99 170 1.36e-32 128
MS.gene52462.t1 MTR_8g046060 77.273 88 11 2 1 79 91 178 4.77e-31 121
MS.gene52462.t1 MTR_4g008820 68.000 100 31 1 1 99 125 224 5.70e-31 129
MS.gene52462.t1 MTR_1g070355 27.888 251 162 4 41 291 80 311 2.01e-18 89.7
MS.gene52462.t1 MTR_0402s0040 25.946 185 118 4 49 233 40 205 8.49e-15 78.2
MS.gene52462.t1 MTR_4g035820 22.759 290 191 7 17 299 61 324 1.25e-12 71.6
MS.gene52462.t1 MTR_0337s0050 72.222 36 10 0 259 294 14 49 1.52e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52462.t1 AT4G38180 27.201 636 393 13 32 665 70 637 4.35e-69 241
MS.gene52462.t1 AT4G15090 25.116 645 402 14 50 690 66 633 7.26e-56 204
MS.gene52462.t1 AT4G15090 25.116 645 402 14 50 690 66 633 7.26e-56 204
MS.gene52462.t1 AT4G15090 25.116 645 402 14 50 690 66 633 7.26e-56 204
MS.gene52462.t1 AT4G15090 25.116 645 402 14 50 690 66 633 7.26e-56 204
MS.gene52462.t1 AT4G15090 25.116 645 402 14 50 690 66 633 7.26e-56 204
MS.gene52462.t1 AT3G06250 24.645 633 354 16 34 661 189 703 1.39e-50 189
MS.gene52462.t1 AT3G06250 24.645 633 354 16 34 661 189 703 1.39e-50 189
MS.gene52462.t1 AT3G06250 24.645 633 354 16 34 661 189 703 1.39e-50 189
MS.gene52462.t1 AT2G27110 25.573 567 348 15 127 689 108 604 3.80e-49 185
MS.gene52462.t1 AT2G27110 25.573 567 348 15 127 689 108 604 3.80e-49 185
MS.gene52462.t1 AT2G27110 26.722 479 294 11 213 689 36 459 9.16e-49 182
MS.gene52462.t1 AT1G76320 25.040 619 372 16 50 662 12 544 1.86e-48 181
MS.gene52462.t1 AT1G76320 25.040 619 372 16 50 662 12 544 6.98e-48 181
MS.gene52462.t1 AT1G76320 25.040 619 372 16 50 662 12 544 6.98e-48 181
MS.gene52462.t1 AT1G76320 25.040 619 372 16 50 662 12 544 8.06e-48 180
MS.gene52462.t1 AT3G22170 22.956 636 397 15 34 662 69 618 1.88e-46 177
MS.gene52462.t1 AT3G22170 22.956 636 397 15 34 662 69 618 1.88e-46 177
MS.gene52462.t1 AT5G18960 23.411 645 370 17 24 661 200 727 3.27e-45 173
MS.gene52462.t1 AT5G18960 23.411 645 370 17 24 661 200 727 3.27e-45 173
MS.gene52462.t1 AT4G38170 24.362 431 268 8 235 662 24 399 1.21e-43 166
MS.gene52462.t1 AT5G28530 23.944 639 389 17 40 660 60 619 6.04e-42 162
MS.gene52462.t1 AT5G28530 23.787 639 386 18 40 660 60 615 3.40e-41 160
MS.gene52462.t1 AT5G28530 23.787 639 386 18 40 660 60 615 3.40e-41 160
MS.gene52462.t1 AT2G32250 23.294 674 387 20 1 667 8 558 7.38e-38 151
MS.gene52462.t1 AT2G32250 23.294 674 387 20 1 667 8 558 8.79e-38 151
MS.gene52462.t1 AT2G32250 23.294 674 387 20 1 667 8 558 8.79e-38 151
MS.gene52462.t1 AT2G32250 23.294 674 387 20 1 667 8 558 9.02e-38 151
MS.gene52462.t1 AT2G32250 23.294 674 387 20 1 667 8 558 9.02e-38 151
MS.gene52462.t1 AT2G32250 23.294 674 387 20 1 667 8 558 9.02e-38 151
MS.gene52462.t1 AT2G32250 23.502 634 359 18 41 667 3 517 2.10e-37 149
MS.gene52462.t1 AT2G32250 23.520 625 352 18 50 667 12 517 2.58e-37 149
MS.gene52462.t1 AT1G80010 24.100 639 390 21 41 662 101 661 2.70e-37 149
MS.gene52462.t1 AT1G10240 25.651 499 332 15 49 536 62 532 5.78e-37 147
MS.gene52462.t1 AT1G10240 25.651 499 332 15 49 536 62 532 5.78e-37 147
MS.gene52462.t1 AT1G52520 22.627 632 395 19 41 662 91 638 2.56e-32 134
MS.gene52462.t1 AT4G19990 28.358 268 185 4 219 483 106 369 1.34e-26 116
MS.gene52462.t1 AT4G19990 38.614 101 48 3 591 689 438 526 7.10e-13 72.4
MS.gene52462.t1 AT4G19990 28.358 268 185 4 219 483 163 426 1.44e-26 116
MS.gene52462.t1 AT4G19990 38.614 101 48 3 591 689 495 583 6.80e-13 72.8
MS.gene52462.t1 AT4G19990 28.358 268 185 4 219 483 177 440 1.57e-26 116
MS.gene52462.t1 AT4G19990 38.614 101 48 3 591 689 509 597 7.44e-13 72.4
MS.gene52462.t1 AT4G19990 28.358 268 185 4 219 483 163 426 1.59e-26 115
MS.gene52462.t1 AT4G19990 38.614 101 48 3 591 689 495 583 7.05e-13 72.4
MS.gene52462.t1 AT4G19990 28.358 268 185 4 219 483 163 426 1.59e-26 115
MS.gene52462.t1 AT4G19990 38.614 101 48 3 591 689 495 583 7.05e-13 72.4
MS.gene52462.t1 AT4G19990 28.358 268 185 4 219 483 163 426 1.77e-26 115
MS.gene52462.t1 AT4G19990 38.614 101 48 3 591 689 495 583 7.24e-13 72.4
MS.gene52462.t1 AT4G19990 28.358 268 185 4 219 483 163 426 1.77e-26 115
MS.gene52462.t1 AT4G19990 38.614 101 48 3 591 689 495 583 7.24e-13 72.4
MS.gene52462.t1 AT5G28530 21.781 629 352 20 40 660 60 556 1.82e-23 105
MS.gene52462.t1 AT5G28530 21.622 629 349 21 40 660 60 552 1.04e-22 103

Find 100 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGATGAGTTAACTAATT+TGG 0.156761 7.2:+61031168 MS.gene52462:CDS
CTTTAGTCATTTCAACATTA+TGG 0.194287 7.2:+61031435 MS.gene52462:CDS
TACATTTCAGCTGCCTTTCT+TGG 0.197151 7.2:+61030887 MS.gene52462:intron
GCAACAAGATTATGCTCTAT+TGG 0.240243 7.2:+61030376 MS.gene52462:CDS
CATCGTAAGAGTGTGTTATT+TGG 0.276792 7.2:+61030920 MS.gene52462:CDS
TATGGTTTGAGGTTTCTTAT+TGG 0.280533 7.2:-61031014 None:intergenic
ATAACACTGGATTCGCTATT+AGG 0.304430 7.2:+61029739 MS.gene52462:CDS
AATCAGATTTCGACTACAAT+TGG 0.318540 7.2:+61031209 MS.gene52462:CDS
TGGTCTTTGCTCATGGCATA+TGG 0.321670 7.2:+61031099 MS.gene52462:CDS
GAGGGATAATCATGTTGATT+TGG 0.335640 7.2:+61031468 MS.gene52462:CDS
ACCAGCCTGGTCTGTGTATA+TGG 0.341000 7.2:-61031032 None:intergenic
GCCGATATTTATTGTTTGTT+CGG 0.341758 7.2:-61030427 None:intergenic
GGTTTCGAATGTTGATGTTT+TGG 0.354913 7.2:+61031732 MS.gene52462:CDS
TCATGTTGATTTGGACTTCA+AGG 0.359475 7.2:+61031477 MS.gene52462:CDS
GTCTTTAGTGCCAACATTCA+TGG 0.367086 7.2:-61032025 None:intergenic
TATGCATTGGTCTTCAGTTT+GGG 0.370760 7.2:+61031309 MS.gene52462:CDS
CAACAAGATTATGCTCTATT+GGG 0.384417 7.2:+61030377 MS.gene52462:CDS
AACAATAAATATCGGCCATT+AGG 0.388497 7.2:+61030434 MS.gene52462:CDS
ACCGAACAAACAATAAATAT+CGG 0.389395 7.2:+61030426 MS.gene52462:CDS
GTATGCATTGGTCTTCAGTT+TGG 0.392120 7.2:+61031308 MS.gene52462:CDS
TTCTCATACTCAACAAGAAC+TGG 0.395633 7.2:-61029897 None:intergenic
TTCCTTCAAATACTATTATG+AGG 0.399583 7.2:+61031609 MS.gene52462:CDS
CCATGATTCTTTATCACTAA+AGG 0.406174 7.2:-61029658 None:intergenic
TAAAGAATCATGGAAGTCTT+TGG 0.408500 7.2:+61029668 MS.gene52462:CDS
CATGTCGTATGTTTGAGAAC+CGG 0.411671 7.2:+61031857 MS.gene52462:CDS
GATTATGATCTTCAAACCTT+GGG 0.413114 7.2:-61031780 None:intergenic
CGATTATGATCTTCAAACCT+TGG 0.425681 7.2:-61031781 None:intergenic
TGGTTGTCACAGTCGACATT+AGG 0.425833 7.2:+61031815 MS.gene52462:CDS
CGAGAAGTAAATGAAGTTCA+AGG 0.430014 7.2:+61030074 MS.gene52462:CDS
AGCTGGAATATATTTGAAGT+TGG 0.433136 7.2:+61029956 MS.gene52462:CDS
TCATAATCGACTTGATGAAA+TGG 0.438098 7.2:+61031795 MS.gene52462:CDS
TGAATGTCTATAAGATATAT+AGG 0.445219 7.2:+61029988 MS.gene52462:CDS
TGGTCTGTGTATATGGTTTG+AGG 0.447350 7.2:-61031025 None:intergenic
GAAAGGGTTGGTTGTAAAGC+TGG 0.447509 7.2:+61029939 MS.gene52462:CDS
CGCTTTAAAACATATTGTGC+AGG 0.447633 7.2:-61031958 None:intergenic
CGTTATGCTTGTAACAAAGA+AGG 0.449439 7.2:+61029822 MS.gene52462:CDS
GCTTTAATAAATTCTAAAGC+TGG 0.450264 7.2:+61030104 MS.gene52462:CDS
GGCCTACTTCGGACTTTAAG+TGG 0.458978 7.2:+61031263 MS.gene52462:CDS
CTCAAGTAGCGCAAATGCTC+TGG 0.460440 7.2:-61030044 None:intergenic
ATGTCGTATGTTTGAGAACC+GGG 0.461344 7.2:+61031858 MS.gene52462:CDS
ATCCGAGAGTGGACAATTGA+CGG 0.474201 7.2:+61029593 MS.gene52462:CDS
ACAAAATAAGAAATCGCATA+AGG 0.482825 7.2:+61029788 MS.gene52462:CDS
GAAGTGATGGGTCAAGGAGT+TGG 0.484292 7.2:+61030149 MS.gene52462:CDS
CTCCTCATAATAGTATTTGA+AGG 0.485089 7.2:-61031611 None:intergenic
TTACAACCAACCCTTTCCTC+TGG 0.485330 7.2:-61029933 None:intergenic
TTTAATTATGCATATAACAC+TGG 0.485542 7.2:+61029726 MS.gene52462:CDS
TCTAATGACAACTCGTCAAA+AGG 0.488137 7.2:+61030217 MS.gene52462:CDS
TATGAGGAGGACACAACAAA+AGG 0.490908 7.2:+61031625 MS.gene52462:CDS
ATGATTGTCAAAACCAAGAA+AGG 0.491378 7.2:-61030900 None:intergenic
ATCAGATTTCGACTACAATT+GGG 0.491708 7.2:+61031210 MS.gene52462:CDS
CGTCAAAAGGAGATGGTGGC+TGG 0.492100 7.2:+61030230 MS.gene52462:CDS
ACATTATGGTTCAGAGAATG+AGG 0.494022 7.2:+61031449 MS.gene52462:CDS
GACCGCATAAGCTGACTGTT+GGG 0.496307 7.2:-61031529 None:intergenic
GAGAACATCTTATGAAGTGA+TGG 0.499875 7.2:+61030136 MS.gene52462:CDS
TGTCTTCTGCAGCATCAACT+TGG 0.502977 7.2:-61030322 None:intergenic
AACCGTCAATTGTCCACTCT+CGG 0.506734 7.2:-61029595 None:intergenic
CTCATTCAAATCGTATGCAT+TGG 0.507227 7.2:+61031296 MS.gene52462:CDS
TTTAAGTCCGAAAATCGAAA+AGG 0.508080 7.2:-61030188 None:intergenic
ATTGGTCTTCAGTTTGGGTG+AGG 0.509410 7.2:+61031314 MS.gene52462:CDS
GATCTTCAAACCTTGGGGAA+AGG 0.519004 7.2:-61031774 None:intergenic
GGTCTTTGCTCATGGCATAT+GGG 0.519436 7.2:+61031100 MS.gene52462:CDS
TAAAGAATCGAACAAGTGAA+TGG 0.519618 7.2:-61031417 None:intergenic
TGTCTATAAGATATATAGGT+GGG 0.523740 7.2:+61029992 MS.gene52462:CDS
CATAATAGTATTTGAAGGAA+AGG 0.529686 7.2:-61031606 None:intergenic
CTGAAATCTACCATGAATGT+TGG 0.534154 7.2:+61032015 MS.gene52462:CDS
TAACAAAGAAGGTTTCAAGA+AGG 0.538422 7.2:+61029833 MS.gene52462:CDS
AATCGAACAAGTGAATGGTC+TGG 0.540971 7.2:-61031412 None:intergenic
ATGAGGAGGACACAACAAAA+GGG 0.542065 7.2:+61031626 MS.gene52462:CDS
CCTTTAGTGATAAAGAATCA+TGG 0.543522 7.2:+61029658 MS.gene52462:CDS
AACAAAGAAGGTTTCAAGAA+GGG 0.545537 7.2:+61029834 MS.gene52462:CDS
AAATGCTCTGGTTTATGTAA+TGG 0.552634 7.2:-61030032 None:intergenic
ACTTCAACAACGCACCAGCC+TGG 0.557139 7.2:-61031045 None:intergenic
AATGAAGCTCTCTCGAAACC+AGG 0.565261 7.2:+61030284 MS.gene52462:CDS
TGAAAATTCAGTTATTGATG+CGG 0.565546 7.2:+61029617 MS.gene52462:CDS
GTGATGGGTCAAGGAGTTGG+AGG 0.568802 7.2:+61030152 MS.gene52462:CDS
GGACCGCATAAGCTGACTGT+TGG 0.579264 7.2:-61031530 None:intergenic
TTGAAGAAAACCTTTCCCCA+AGG 0.580876 7.2:+61031764 MS.gene52462:CDS
TGGTGTATACTTGTTTACTA+CGG 0.585960 7.2:-61031551 None:intergenic
TCTTATGAAGTGATGGGTCA+AGG 0.589029 7.2:+61030143 MS.gene52462:CDS
ACCATATACACAGACCAGGC+TGG 0.590176 7.2:+61031031 MS.gene52462:CDS
GACAACTCGTCAAAAGGAGA+TGG 0.599038 7.2:+61030223 MS.gene52462:CDS
TTGATATCGTTGTGCTTGAG+TGG 0.601464 7.2:-61032049 None:intergenic
AGAACATCTTATGAAGTGAT+GGG 0.601988 7.2:+61030137 MS.gene52462:CDS
AACTCGTCAAAAGGAGATGG+TGG 0.603142 7.2:+61030226 MS.gene52462:CDS
ATCCCAACAGTCAGCTTATG+CGG 0.606153 7.2:+61031527 MS.gene52462:CDS
CTTCAAATACTATTATGAGG+AGG 0.607664 7.2:+61031612 MS.gene52462:CDS
ATATCAACTTCATCCGAGAG+TGG 0.612216 7.2:+61029582 MS.gene52462:CDS
AGAACTGGACTGTCACATGT+TGG 0.620791 7.2:-61029882 None:intergenic
AGCCACTTAAAGTCCGAAGT+AGG 0.621799 7.2:-61031265 None:intergenic
GGGTCAAGGAGTTGGAGGCA+CGG 0.621882 7.2:+61030157 MS.gene52462:CDS
ATTATGATCTTCAAACCTTG+GGG 0.630358 7.2:-61031779 None:intergenic
CATTATGGTTCAGAGAATGA+GGG 0.643278 7.2:+61031450 MS.gene52462:CDS
ATGTCTATAAGATATATAGG+TGG 0.643489 7.2:+61029991 MS.gene52462:CDS
GATTTCAGCTTATCGACAGA+CGG 0.644926 7.2:-61032000 None:intergenic
TGAATAAATGAAAAGCAAGA+TGG 0.655697 7.2:-61031571 None:intergenic
CATGTCGACATAAGAAACCC+CGG 0.663279 7.2:-61031876 None:intergenic
TCAAACCATATACACAGACC+AGG 0.671057 7.2:+61031027 MS.gene52462:CDS
TGTCGTATGTTTGAGAACCG+GGG 0.673760 7.2:+61031859 MS.gene52462:CDS
ATGTTGATAATGATAATGAG+AGG 0.683310 7.2:+61031710 MS.gene52462:CDS
TGTTGATAATGATAATGAGA+GGG 0.689129 7.2:+61031711 MS.gene52462:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATGTCTATAAGATATAT+AGG + chr7.2:61029988-61030007 MS.gene52462:CDS 20.0%
!! TTTAATTATGCATATAACAC+TGG + chr7.2:61029726-61029745 MS.gene52462:CDS 20.0%
!!! AAGTTTAGAATTTAATGTTC+TGG + chr7.2:61030600-61030619 MS.gene52462:intron 20.0%
!!! AATTTAATGTTCTGGTTTAT+GGG + chr7.2:61030608-61030627 MS.gene52462:intron 20.0%
!!! ATGATGAAAAACTGTTTTAA+TGG + chr7.2:61031238-61031257 MS.gene52462:CDS 20.0%
! AAAACACCTTGAAAAACATT+CGG - chr7.2:61031076-61031095 None:intergenic 25.0%
! ACAAAATAAGAAATCGCATA+AGG + chr7.2:61029788-61029807 MS.gene52462:CDS 25.0%
! ACCGAACAAACAATAAATAT+CGG + chr7.2:61030426-61030445 MS.gene52462:CDS 25.0%
! AGTACAAAATACTAACCTAA+TGG - chr7.2:61030452-61030471 None:intergenic 25.0%
! ATGTCTATAAGATATATAGG+TGG + chr7.2:61029991-61030010 MS.gene52462:CDS 25.0%
! CATAATAGTATTTGAAGGAA+AGG - chr7.2:61031609-61031628 None:intergenic 25.0%
! CTTTAGTCATTTCAACATTA+TGG + chr7.2:61031435-61031454 MS.gene52462:CDS 25.0%
! TGAAAATTCAGTTATTGATG+CGG + chr7.2:61029617-61029636 MS.gene52462:CDS 25.0%
! TGAAATTTGAATGAATGTTC+TGG + chr7.2:61030499-61030518 MS.gene52462:intron 25.0%
! TGAATAAATGAAAAGCAAGA+TGG - chr7.2:61031574-61031593 None:intergenic 25.0%
! TGTCTATAAGATATATAGGT+GGG + chr7.2:61029992-61030011 MS.gene52462:CDS 25.0%
! TTCCTTCAAATACTATTATG+AGG + chr7.2:61031609-61031628 MS.gene52462:CDS 25.0%
! TTTCGATGAGTTAACTAATT+TGG + chr7.2:61031168-61031187 MS.gene52462:CDS 25.0%
! TTTCTATTTACACAACACAA+TGG + chr7.2:61030817-61030836 MS.gene52462:intron 25.0%
!! TGTTGTATTTTGTTCTGATT+TGG + chr7.2:61030858-61030877 MS.gene52462:intron 25.0%
!!! AAGACATAGCTAGTATTTTT+TGG + chr7.2:61030339-61030358 MS.gene52462:CDS 25.0%
!!! AGACATAGCTAGTATTTTTT+GGG + chr7.2:61030340-61030359 MS.gene52462:CDS 25.0%
!!! ATGTTGATAATGATAATGAG+AGG + chr7.2:61031710-61031729 MS.gene52462:CDS 25.0%
!!! CTTATTTTGTGAATTGTTCT+TGG - chr7.2:61029778-61029797 None:intergenic 25.0%
!!! GAATTTAATGTTCTGGTTTA+TGG + chr7.2:61030607-61030626 MS.gene52462:intron 25.0%
!!! GCTTTAATAAATTCTAAAGC+TGG + chr7.2:61030104-61030123 MS.gene52462:CDS 25.0%
!!! TGAAAAACTGTTTTAATGGA+AGG + chr7.2:61031242-61031261 MS.gene52462:CDS 25.0%
!!! TGTTGATAATGATAATGAGA+GGG + chr7.2:61031711-61031730 MS.gene52462:CDS 25.0%
AAAAACACATGATCTTTCCA+TGG - chr7.2:61030671-61030690 None:intergenic 30.0%
AACAAAGAAGGTTTCAAGAA+GGG + chr7.2:61029834-61029853 MS.gene52462:CDS 30.0%
AACAATAAATATCGGCCATT+AGG + chr7.2:61030434-61030453 MS.gene52462:CDS 30.0%
AATCAGATTTCGACTACAAT+TGG + chr7.2:61031209-61031228 MS.gene52462:CDS 30.0%
AGAACATCTTATGAAGTGAT+GGG + chr7.2:61030137-61030156 MS.gene52462:CDS 30.0%
ATCAGATTTCGACTACAATT+GGG + chr7.2:61031210-61031229 MS.gene52462:CDS 30.0%
ATGATTGTCAAAACCAAGAA+AGG - chr7.2:61030903-61030922 None:intergenic 30.0%
ATTATGATCTTCAAACCTTG+GGG - chr7.2:61031782-61031801 None:intergenic 30.0%
CAACAAGATTATGCTCTATT+GGG + chr7.2:61030377-61030396 MS.gene52462:CDS 30.0%
CCATGATTCTTTATCACTAA+AGG - chr7.2:61029661-61029680 None:intergenic 30.0%
CCTTTAGTGATAAAGAATCA+TGG + chr7.2:61029658-61029677 MS.gene52462:CDS 30.0%
CTCCTCATAATAGTATTTGA+AGG - chr7.2:61031614-61031633 None:intergenic 30.0%
CTGGTATATGTGTGTTAATT+TGG + chr7.2:61030538-61030557 MS.gene52462:intron 30.0%
CTTCAAATACTATTATGAGG+AGG + chr7.2:61031612-61031631 MS.gene52462:CDS 30.0%
GAGAATGCAAAGAAAAATCT+CGG + chr7.2:61031124-61031143 MS.gene52462:CDS 30.0%
GATTATGATCTTCAAACCTT+GGG - chr7.2:61031783-61031802 None:intergenic 30.0%
GCCGATATTTATTGTTTGTT+CGG - chr7.2:61030430-61030449 None:intergenic 30.0%
TAAAGAAAAACCAGAGGAAA+GGG + chr7.2:61029923-61029942 MS.gene52462:CDS 30.0%
TAAAGAATCATGGAAGTCTT+TGG + chr7.2:61029668-61029687 MS.gene52462:CDS 30.0%
TAAAGAATCGAACAAGTGAA+TGG - chr7.2:61031420-61031439 None:intergenic 30.0%
TAACAAAGAAGGTTTCAAGA+AGG + chr7.2:61029833-61029852 MS.gene52462:CDS 30.0%
TGGATATCATAGTAAAAACC+TGG - chr7.2:61030305-61030324 None:intergenic 30.0%
TGGTGTATACTTGTTTACTA+CGG - chr7.2:61031554-61031573 None:intergenic 30.0%
TGTACATAGCACAAATTCTA+AGG - chr7.2:61030647-61030666 None:intergenic 30.0%
TTTAAGTCCGAAAATCGAAA+AGG - chr7.2:61030191-61030210 None:intergenic 30.0%
! AAATGCTCTGGTTTATGTAA+TGG - chr7.2:61030035-61030054 None:intergenic 30.0%
! AGCTGGAATATATTTGAAGT+TGG + chr7.2:61029956-61029975 MS.gene52462:CDS 30.0%
! CAAAGTTTTCACAATTGAGA+AGG + chr7.2:61031669-61031688 MS.gene52462:CDS 30.0%
! GAATCTTCCTTTTCGATTTT+CGG + chr7.2:61030181-61030200 MS.gene52462:CDS 30.0%
! TATGGTTTGAGGTTTCTTAT+TGG - chr7.2:61031017-61031036 None:intergenic 30.0%
! TCAATTCCGAATGTTTTTCA+AGG + chr7.2:61031067-61031086 MS.gene52462:CDS 30.0%
!! ACATGTTTTCAAGATTTTGG+AGG + chr7.2:61031894-61031913 MS.gene52462:CDS 30.0%
!! ATGTTCTGGTTTAGAATTGA+AGG + chr7.2:61030513-61030532 MS.gene52462:intron 30.0%
!! TCATAATCGACTTGATGAAA+TGG + chr7.2:61031795-61031814 MS.gene52462:CDS 30.0%
!! TCGACATGTTTTCAAGATTT+TGG + chr7.2:61031891-61031910 MS.gene52462:CDS 30.0%
!!! CTGCACAATATGTTTTAAAG+CGG + chr7.2:61031959-61031978 MS.gene52462:CDS 30.0%
!!! GTTTTTCAAGGTGTTTTTCA+TGG + chr7.2:61031079-61031098 MS.gene52462:CDS 30.0%
ACATTATGGTTCAGAGAATG+AGG + chr7.2:61031449-61031468 MS.gene52462:CDS 35.0%
ATAACACTGGATTCGCTATT+AGG + chr7.2:61029739-61029758 MS.gene52462:CDS 35.0%
CATTATGGTTCAGAGAATGA+GGG + chr7.2:61031450-61031469 MS.gene52462:CDS 35.0%
CGAGAAGTAAATGAAGTTCA+AGG + chr7.2:61030074-61030093 MS.gene52462:CDS 35.0%
CGATTATGATCTTCAAACCT+TGG - chr7.2:61031784-61031803 None:intergenic 35.0%
CGTTATGCTTGTAACAAAGA+AGG + chr7.2:61029822-61029841 MS.gene52462:CDS 35.0%
CTAAAGAAAAACCAGAGGAA+AGG + chr7.2:61029922-61029941 MS.gene52462:CDS 35.0%
CTCATTCAAATCGTATGCAT+TGG + chr7.2:61031296-61031315 MS.gene52462:CDS 35.0%
CTGAAATCTACCATGAATGT+TGG + chr7.2:61032015-61032034 MS.gene52462:CDS 35.0%
GAAAGCTAAAGAAAAACCAG+AGG + chr7.2:61029917-61029936 MS.gene52462:CDS 35.0%
GAGAACATCTTATGAAGTGA+TGG + chr7.2:61030136-61030155 MS.gene52462:CDS 35.0%
GCAACAAGATTATGCTCTAT+TGG + chr7.2:61030376-61030395 MS.gene52462:CDS 35.0%
GTCTGCTTAATCCTAAAAAC+AGG + chr7.2:61029859-61029878 MS.gene52462:CDS 35.0%
TCTAATGACAACTCGTCAAA+AGG + chr7.2:61030217-61030236 MS.gene52462:CDS 35.0%
TTCTCATACTCAACAAGAAC+TGG - chr7.2:61029900-61029919 None:intergenic 35.0%
! CATCGTAAGAGTGTGTTATT+TGG + chr7.2:61030920-61030939 MS.gene52462:CDS 35.0%
! GAGGGATAATCATGTTGATT+TGG + chr7.2:61031468-61031487 MS.gene52462:CDS 35.0%
! GGTTTCGAATGTTGATGTTT+TGG + chr7.2:61031732-61031751 MS.gene52462:CDS 35.0%
! TCTTTCAATGCTTTTCTTCG+TGG + chr7.2:61031379-61031398 MS.gene52462:CDS 35.0%
! TGGTTTAGAATTGAAGGTTC+TGG + chr7.2:61030519-61030538 MS.gene52462:intron 35.0%
! TTTTAATGGAAGGCCTACTT+CGG + chr7.2:61031252-61031271 MS.gene52462:CDS 35.0%
! TTTTTCATGGTCTTTGCTCA+TGG + chr7.2:61031092-61031111 MS.gene52462:CDS 35.0%
!! CACAAATTCTAAGGCAAGAT+AGG - chr7.2:61030638-61030657 None:intergenic 35.0%
!! CGCTTTAAAACATATTGTGC+AGG - chr7.2:61031961-61031980 None:intergenic 35.0%
!! TATGCATTGGTCTTCAGTTT+GGG + chr7.2:61031309-61031328 MS.gene52462:CDS 35.0%
!! TCATGTTGATTTGGACTTCA+AGG + chr7.2:61031477-61031496 MS.gene52462:CDS 35.0%
!! TTCAAGATTTTGGAGGTCTT+AGG + chr7.2:61031901-61031920 MS.gene52462:CDS 35.0%
!!! AGACATCAGCTACTTTTGAT+TGG + chr7.2:61030963-61030982 MS.gene52462:CDS 35.0%
!!! CACAATATGTTTTAAAGCGG+TGG + chr7.2:61031962-61031981 MS.gene52462:CDS 35.0%
AATCGAACAAGTGAATGGTC+TGG - chr7.2:61031415-61031434 None:intergenic 40.0%
ACCTATGATCTTTGCATAGC+TGG - chr7.2:61030767-61030786 None:intergenic 40.0%
ATATCAACTTCATCCGAGAG+TGG + chr7.2:61029582-61029601 MS.gene52462:CDS 40.0%
ATGAGGAGGACACAACAAAA+GGG + chr7.2:61031626-61031645 MS.gene52462:CDS 40.0%
ATGTCGTATGTTTGAGAACC+GGG + chr7.2:61031858-61031877 MS.gene52462:CDS 40.0%
ATTTGTGCTATGTACAGCCA+TGG + chr7.2:61030651-61030670 MS.gene52462:intron 40.0%
CATGTCGTATGTTTGAGAAC+CGG + chr7.2:61031857-61031876 MS.gene52462:CDS 40.0%
GATTTCAGCTTATCGACAGA+CGG - chr7.2:61032003-61032022 None:intergenic 40.0%
GTCTTTAGTGCCAACATTCA+TGG - chr7.2:61032028-61032047 None:intergenic 40.0%
TACATTTCAGCTGCCTTTCT+TGG + chr7.2:61030887-61030906 MS.gene52462:intron 40.0%
TATGAGGAGGACACAACAAA+AGG + chr7.2:61031625-61031644 MS.gene52462:CDS 40.0%
TCAAACCATATACACAGACC+AGG + chr7.2:61031027-61031046 MS.gene52462:CDS 40.0%
TCCAGCTATGCAAAGATCAT+AGG + chr7.2:61030763-61030782 MS.gene52462:intron 40.0%
TGGTCTGTGTATATGGTTTG+AGG - chr7.2:61031028-61031047 None:intergenic 40.0%
TTGAAGAAAACCTTTCCCCA+AGG + chr7.2:61031764-61031783 MS.gene52462:CDS 40.0%
TTGATATCGTTGTGCTTGAG+TGG - chr7.2:61032052-61032071 None:intergenic 40.0%
!! AAGATTTTGGAGGTCTTAGG+TGG + chr7.2:61031904-61031923 MS.gene52462:CDS 40.0%
!! GTATGCATTGGTCTTCAGTT+TGG + chr7.2:61031308-61031327 MS.gene52462:CDS 40.0%
!! TCACATGTTGGCCTGTTTTT+AGG - chr7.2:61029873-61029892 None:intergenic 40.0%
!! TCTTATGAAGTGATGGGTCA+AGG + chr7.2:61030143-61030162 MS.gene52462:CDS 40.0%
!!! GCTAGTATTTTTTGGGCAGA+TGG + chr7.2:61030347-61030366 MS.gene52462:CDS 40.0%
AACCGTCAATTGTCCACTCT+CGG - chr7.2:61029598-61029617 None:intergenic 45.0%
AACTCGTCAAAAGGAGATGG+TGG + chr7.2:61030226-61030245 MS.gene52462:CDS 45.0%
AATGAAGCTCTCTCGAAACC+AGG + chr7.2:61030284-61030303 MS.gene52462:CDS 45.0%
AGAACTGGACTGTCACATGT+TGG - chr7.2:61029885-61029904 None:intergenic 45.0%
AGCCACTTAAAGTCCGAAGT+AGG - chr7.2:61031268-61031287 None:intergenic 45.0%
ATCCCAACAGTCAGCTTATG+CGG + chr7.2:61031527-61031546 MS.gene52462:CDS 45.0%
ATCCGAGAGTGGACAATTGA+CGG + chr7.2:61029593-61029612 MS.gene52462:CDS 45.0%
CATGTCGACATAAGAAACCC+CGG - chr7.2:61031879-61031898 None:intergenic 45.0%
GAAAAACCAGAGGAAAGGGT+TGG + chr7.2:61029927-61029946 MS.gene52462:CDS 45.0%
GACAACTCGTCAAAAGGAGA+TGG + chr7.2:61030223-61030242 MS.gene52462:CDS 45.0%
GATCTTCAAACCTTGGGGAA+AGG - chr7.2:61031777-61031796 None:intergenic 45.0%
GGTCTTTGCTCATGGCATAT+GGG + chr7.2:61031100-61031119 MS.gene52462:CDS 45.0%
TGGTCTTTGCTCATGGCATA+TGG + chr7.2:61031099-61031118 MS.gene52462:CDS 45.0%
TGGTTGTCACAGTCGACATT+AGG + chr7.2:61031815-61031834 MS.gene52462:CDS 45.0%
TGTCGTATGTTTGAGAACCG+GGG + chr7.2:61031859-61031878 MS.gene52462:CDS 45.0%
TGTCTTCTGCAGCATCAACT+TGG - chr7.2:61030325-61030344 None:intergenic 45.0%
TTACAACCAACCCTTTCCTC+TGG - chr7.2:61029936-61029955 None:intergenic 45.0%
! GTGAGGTCACATTTTACAGC+TGG + chr7.2:61031331-61031350 MS.gene52462:CDS 45.0%
!! ATTGGTCTTCAGTTTGGGTG+AGG + chr7.2:61031314-61031333 MS.gene52462:CDS 45.0%
!! GAAAGGGTTGGTTGTAAAGC+TGG + chr7.2:61029939-61029958 MS.gene52462:CDS 45.0%
ACCAGCCTGGTCTGTGTATA+TGG - chr7.2:61031035-61031054 None:intergenic 50.0%
ACCATATACACAGACCAGGC+TGG + chr7.2:61031031-61031050 MS.gene52462:CDS 50.0%
CTCAAGTAGCGCAAATGCTC+TGG - chr7.2:61030047-61030066 None:intergenic 50.0%
GACCGCATAAGCTGACTGTT+GGG - chr7.2:61031532-61031551 None:intergenic 50.0%
GGCCTACTTCGGACTTTAAG+TGG + chr7.2:61031263-61031282 MS.gene52462:CDS 50.0%
!! GAAGTGATGGGTCAAGGAGT+TGG + chr7.2:61030149-61030168 MS.gene52462:CDS 50.0%
ACTTCAACAACGCACCAGCC+TGG - chr7.2:61031048-61031067 None:intergenic 55.0%
GGACCGCATAAGCTGACTGT+TGG - chr7.2:61031533-61031552 None:intergenic 55.0%
! CGTCAAAAGGAGATGGTGGC+TGG + chr7.2:61030230-61030249 MS.gene52462:CDS 55.0%
!! GTGATGGGTCAAGGAGTTGG+AGG + chr7.2:61030152-61030171 MS.gene52462:CDS 55.0%
GGGTCAAGGAGTTGGAGGCA+CGG + chr7.2:61030157-61030176 MS.gene52462:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 61029573 61032095 61029573 ID=MS.gene52462
chr7.2 mRNA 61029573 61032095 61029573 ID=MS.gene52462.t1;Parent=MS.gene52462
chr7.2 exon 61029573 61030455 61029573 ID=MS.gene52462.t1.exon1;Parent=MS.gene52462.t1
chr7.2 CDS 61029573 61030455 61029573 ID=cds.MS.gene52462.t1;Parent=MS.gene52462.t1
chr7.2 exon 61030897 61032095 61030897 ID=MS.gene52462.t1.exon2;Parent=MS.gene52462.t1
chr7.2 CDS 61030897 61032095 61030897 ID=cds.MS.gene52462.t1;Parent=MS.gene52462.t1
Gene Sequence

>MS.gene52462

ATGGATTTGATATCAACTTCATCCGAGAGTGGACAATTGACGGTTGAAAATTCAGTTATTGATGCGGATAGTTCTCAATGTTACTCCTTTAGTGATAAAGAATCATGGAAGTCTTTGGTCTTTAAATCTATAAAAGAGATTGAAGATTTTTATTTTAATTATGCATATAACACTGGATTCGCTATTAGGAGTATGTTGAAGTCCAAGAACAATTCACAAAATAAGAAATCGCATAAGGTACATTATGTGCGTTATGCTTGTAACAAAGAAGGTTTCAAGAAGGGAAGTCTGCTTAATCCTAAAAACAGGCCAACATGTGACAGTCCAGTTCTTGTTGAGTATGAGAAAGCTAAAGAAAAACCAGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGTTGGATGAAGCGTTGAATGTCTATAAGATATATAGGTGGGAAGTTGATCACTGTCATCCATTACATAAACCAGAGCATTTGCGCTACTTGAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTTGCTTTAATAAATTCTAAAGCTGGAATGTCGATGAGAACATCTTATGAAGTGATGGGTCAAGGAGTTGGAGGCACGGAGAATCTTCCTTTTCGATTTTCGGACTTAAAGAACTATCTAATGACAACTCGTCAAAAGGAGATGGTGGCTGGTGAAGCAACTGTTATTCAAGAATTCTTTAGAAATGAAGCTCTCTCGAAACCAGGTTTTTACTATGATATCCAAGTTGATGCTGCAGAAGACATAGCTAGTATTTTTTGGGCAGATGGAATTATGCAACAAGATTATGCTCTATTGGGTGATGTTGTCAGTTTTGATACAACTTACCGAACAAACAATAAATATCGGCCATTAGGTTAGTATTTTGTACTTCTCACAGTTTTTAATTCTTATATTCTTGAAATTTGAATGAATGTTCTGGTTTAGAATTGAAGGTTCTGGTATATGTGTGTTAATTTGGCTCTTGTGTGTGTTTAAAATTGAATGTTTATATTGATTGAAGTTTAGAATTTAATGTTCTGGTTTATGGGTGATCCTATCTTGCCTTAGAATTTGTGCTATGTACAGCCATGGAAAGATCATGTGTTTTTTTATCGATGATAAATAAATAGCTCTTTCTGTGTTTGCGAGTTTAGACATCTCGCTTGAGAAGTTGTGCTATGTCCAGCTATGCAAAGATCATAGGTGTTTTTTTACAGTTGTTAAATGAATAGCTTTTTCTATTTACACAACACAATGGTTTTATATTTTTTAAATATGTTGTATTTTGTTCTGATTTGGTTCATTTACATTTCAGCTGCCTTTCTTGGTTTTGACAATCATCGTAAGAGTGTGTTATTTGGTGTTGCGCTACTGTATGATGAGACATCAGCTACTTTTGATTGGTTGTTTACAACTTTTTTGAAGTGTATGTCCAATAAGAAACCTCAAACCATATACACAGACCAGGCTGGTGCGTTGTTGAAGTCAATTCCGAATGTTTTTCAAGGTGTTTTTCATGGTCTTTGCTCATGGCATATGGGAGAGAATGCAAAGAAAAATCTCGGCTCTCGTGCAAACAGTGCATTTTTCGATGAGTTAACTAATTTGGTTTCAAATGTCGAAGATGAATCAGATTTCGACTACAATTGGGATCAGATGATGAAAAACTGTTTTAATGGAAGGCCTACTTCGGACTTTAAGTGGCTTGTTCAAACTCATTCAAATCGTATGCATTGGTCTTCAGTTTGGGTGAGGTCACATTTTACAGCTGGTTTGAAAACGACTCAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTTTGCAGCCAGACCATTCACTTGTTCGATTCTTTAGTCATTTCAACATTATGGTTCAGAGAATGAGGGATAATCATGTTGATTTGGACTTCAAGGCTGCAAACACTAGAACAAAAAATAATTATCCCAACAGTCAGCTTATGCGGTCCGTAGTAAACAAGTATACACCATCTTGCTTTTCATTTATTCACAGTCAGTATGACCTTTCCTTCAAATACTATTATGAGGAGGACACAACAAAAGGGTCTGAATTGAACAAGTTCTTCAAAGTTTTCACAATTGAGAAGGTTGATTATAATTACGATGATGTTGATAATGATAATGAGAGGGTTTCGAATGTTGATGTTTTGGATGCAGAACTTGAAGAAAACCTTTCCCCAAGGTTTGAAGATCATAATCGACTTGATGAAATGGTTGTCACAGTCGACATTAGGAGCAAAAGTTTTACTTGTTCATGTCGTATGTTTGAGAACCGGGGTTTCTTATGTCGACATGTTTTCAAGATTTTGGAGGTCTTAGGTGGTCATGTGCAATATCATTTTTTGAAGACTATACCTGCACAATATGTTTTAAAGCGGTGGACTAGAGATGTGCGTCCGTCTGTCGATAAGCTGAAATCTACCATGAATGTTGGCACTAAAGACACCACTCAAGCACAACGATATCAACAAATTTGTGCTGTTACAGTTTAG
Protein sequence

>MS.gene52462.t1

MDLISTSSESGQLTVENSVIDADSSQCYSFSDKESWKSLVFKSIKEIEDFYFNYAYNTGFAIRSMLKSKNNSQNKKSHKVHYVRYACNKEGFKKGSLLNPKNRPTCDSPVLVEYEKAKEKPEERVGCKAGIYLKLDEALNVYKIYRWEVDHCHPLHKPEHLRYLRSFREVNEVQGQLALINSKAGMSMRTSYEVMGQGVGGTENLPFRFSDLKNYLMTTRQKEMVAGEATVIQEFFRNEALSKPGFYYDIQVDAAEDIASIFWADGIMQQDYALLGDVVSFDTTYRTNNKYRPLAAFLGFDNHRKSVLFGVALLYDETSATFDWLFTTFLKCMSNKKPQTIYTDQAGALLKSIPNVFQGVFHGLCSWHMGENAKKNLGSRANSAFFDELTNLVSNVEDESDFDYNWDQMMKNCFNGRPTSDFKWLVQTHSNRMHWSSVWVRSHFTAGLKTTQLSESFNAFLRGFLQPDHSLVRFFSHFNIMVQRMRDNHVDLDFKAANTRTKNNYPNSQLMRSVVNKYTPSCFSFIHSQYDLSFKYYYEEDTTKGSELNKFFKVFTIEKVDYNYDDVDNDNERVSNVDVLDAELEENLSPRFEDHNRLDEMVVTVDIRSKSFTCSCRMFENRGFLCRHVFKILEVLGGHVQYHFLKTIPAQYVLKRWTRDVRPSVDKLKSTMNVGTKDTTQAQRYQQICAVTV