AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52542

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52542.t1 MTR_3g006185 96.000 175 7 0 1 175 1 175 1.28e-113 322
MS.gene52542.t1 MTR_3g006105 85.792 183 25 1 1 182 1 183 1.68e-105 301
MS.gene52542.t1 MTR_3g006125 88.636 176 19 1 1 175 82 257 2.00e-98 286
MS.gene52542.t1 MTR_3g006150 63.415 164 52 2 1 164 1 156 3.38e-62 191
MS.gene52542.t1 MTR_3g006150 44.578 83 42 1 98 180 8 86 5.14e-12 62.0
MS.gene52542.t1 MTR_3g006065 61.494 174 59 2 1 174 1 166 9.35e-62 191
MS.gene52542.t1 MTR_3g006010 76.042 96 23 0 1 96 1 96 1.85e-35 130
MS.gene52542.t1 MTR_3g006010 86.047 43 6 0 175 217 427 469 1.08e-19 87.0
MS.gene52542.t1 MTR_3g006010 38.053 113 40 1 94 176 4 116 2.88e-12 65.5
MS.gene52542.t1 MTR_1g104960 45.679 162 83 4 6 167 11 167 5.38e-33 117
MS.gene52542.t1 MTR_1g104960 44.000 75 41 1 9 83 100 173 4.89e-11 59.7
MS.gene52542.t1 MTR_4g133300 45.614 171 85 4 2 172 83 245 2.79e-31 115
MS.gene52542.t1 MTR_4g133300 40.462 173 89 4 8 180 12 170 2.43e-27 104
MS.gene52542.t1 MTR_4g133470 45.614 171 85 4 2 172 83 245 4.50e-31 114
MS.gene52542.t1 MTR_4g133470 39.306 173 91 4 8 180 12 170 3.08e-25 99.4
MS.gene52542.t1 MTR_1g105955 42.767 159 79 2 9 167 17 163 3.56e-30 110
MS.gene52542.t1 MTR_8g062700 43.750 160 85 3 2 161 36 190 8.10e-28 110
MS.gene52542.t1 MTR_8g062700 51.899 79 37 1 91 169 35 112 1.42e-18 84.3
MS.gene52542.t1 MTR_8g062700 43.750 160 85 3 2 161 36 190 8.50e-28 110
MS.gene52542.t1 MTR_8g062700 51.899 79 37 1 91 169 35 112 1.42e-18 84.3
MS.gene52542.t1 MTR_1g104980 40.491 163 76 4 23 183 13 156 3.76e-25 97.1
MS.gene52542.t1 MTR_3g006180 97.619 42 1 0 175 216 297 338 2.04e-23 96.3
MS.gene52542.t1 MTR_7g013380 35.758 165 99 3 8 170 99 258 2.78e-23 95.1
MS.gene52542.t1 MTR_7g013380 36.471 170 101 3 2 169 7 171 2.25e-21 90.1
MS.gene52542.t1 MTR_7g013380 40.698 86 50 1 8 92 185 270 1.31e-13 68.6
MS.gene52542.t1 MTR_6g008995 39.752 161 88 4 2 161 31 183 2.80e-23 97.1
MS.gene52542.t1 MTR_6g008995 45.205 73 39 1 94 166 33 104 3.47e-12 65.1
MS.gene52542.t1 MTR_6g008970 37.714 175 102 4 2 175 57 225 7.46e-23 96.7
MS.gene52542.t1 MTR_6g008970 46.067 89 43 2 94 182 59 142 9.17e-16 75.9
MS.gene52542.t1 MTR_5g036670 39.130 161 93 3 2 162 37 192 7.76e-23 96.7
MS.gene52542.t1 MTR_5g036670 49.438 89 40 2 94 182 39 122 1.97e-17 80.9
MS.gene52542.t1 MTR_1g104940 47.664 107 43 2 5 98 9 115 4.98e-22 87.4
MS.gene52542.t1 MTR_1g104940 42.169 83 47 1 98 180 14 95 1.97e-11 59.7
MS.gene52542.t1 MTR_3g006120 90.698 43 4 0 175 217 310 352 2.44e-20 87.8
MS.gene52542.t1 MTR_3g006100 85.000 40 6 0 175 214 310 349 7.56e-18 80.9
MS.gene52542.t1 MTR_1g104937 50.538 93 41 2 6 98 10 97 8.32e-18 76.3
MS.gene52542.t1 MTR_6g008995 38.636 132 73 3 31 161 2 126 1.62e-17 80.5
MS.gene52542.t1 MTR_1g109550 36.806 144 76 3 6 149 14 142 3.02e-17 75.5
MS.gene52542.t1 MTR_1g109550 35.398 113 58 2 76 185 1 101 2.04e-14 68.2
MS.gene52542.t1 MTR_8g062350 33.166 199 89 6 2 161 8 201 8.57e-16 73.2
MS.gene52542.t1 MTR_8g062350 46.429 84 42 2 91 174 7 87 2.90e-13 66.2
MS.gene52542.t1 MTR_1g105960 40.476 126 44 3 9 134 2 96 9.16e-16 70.9
MS.gene52542.t1 MTR_1g105960 47.059 85 39 2 99 183 2 80 1.97e-15 69.7
MS.gene52542.t1 MTR_7g013410 33.813 139 83 2 23 161 12 141 1.77e-15 70.9
MS.gene52542.t1 MTR_1g105010 39.286 112 63 2 84 195 2 108 5.53e-14 66.2
MS.gene52542.t1 MTR_1g105010 38.636 88 53 1 1 88 9 95 1.34e-11 60.1
MS.gene52542.t1 MTR_3g006000 51.515 66 31 1 106 170 14 79 5.11e-13 62.8
MS.gene52542.t1 MTR_2g097830 38.739 111 55 2 8 118 70 167 7.56e-13 64.3
MS.gene52542.t1 MTR_1g104950 41.573 89 44 2 32 120 1 81 2.49e-12 60.8
MS.gene52542.t1 MTR_3g006140 65.789 38 13 0 175 212 332 369 9.65e-12 63.5
MS.gene52542.t1 MTR_1g093310 45.570 79 36 3 98 176 9 80 2.89e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52542.t1 AT3G01320 41.875 160 87 3 2 161 51 204 7.62e-25 102
MS.gene52542.t1 AT3G01320 50.000 74 36 1 94 167 53 125 1.14e-15 75.9
MS.gene52542.t1 AT3G01320 41.875 160 87 3 2 161 51 204 8.47e-25 102
MS.gene52542.t1 AT3G01320 50.000 74 36 1 94 167 53 125 1.16e-15 75.9
MS.gene52542.t1 AT1G70030 38.889 162 88 4 2 161 5 157 2.12e-23 92.4
MS.gene52542.t1 AT5G15020 38.509 161 92 3 1 161 45 198 8.65e-23 96.3
MS.gene52542.t1 AT5G15020 45.946 74 39 1 94 167 48 120 7.03e-14 70.5
MS.gene52542.t1 AT5G15020 38.509 161 92 3 1 161 45 198 9.26e-23 96.3
MS.gene52542.t1 AT5G15020 45.946 74 39 1 94 167 48 120 6.97e-14 70.5
MS.gene52542.t1 AT1G70060 39.375 160 93 3 2 161 8 163 9.50e-23 96.3
MS.gene52542.t1 AT1G70060 48.718 78 39 1 90 167 6 82 1.42e-15 75.5
MS.gene52542.t1 AT1G70060 39.375 160 93 3 2 161 8 163 9.50e-23 96.3
MS.gene52542.t1 AT1G70060 48.718 78 39 1 90 167 6 82 1.42e-15 75.5
MS.gene52542.t1 AT1G24190 36.875 160 96 3 2 161 8 162 2.23e-22 95.1
MS.gene52542.t1 AT1G24190 46.753 77 40 1 91 167 7 82 4.62e-15 73.9
MS.gene52542.t1 AT1G24190 36.875 160 96 3 2 161 8 162 2.40e-22 95.1
MS.gene52542.t1 AT1G24190 46.753 77 40 1 91 167 7 82 4.66e-15 73.9
MS.gene52542.t1 AT1G24190 36.875 160 96 3 2 161 8 162 2.48e-22 95.1
MS.gene52542.t1 AT1G24190 46.154 78 41 1 90 167 6 82 4.62e-15 73.9
MS.gene52542.t1 AT1G24230 33.333 168 91 3 4 170 10 157 4.04e-20 85.9
MS.gene52542.t1 AT1G24230 28.667 150 99 2 8 157 86 227 9.03e-13 65.9
MS.gene52542.t1 AT1G10450 37.805 164 93 4 8 170 84 239 6.06e-20 88.2
MS.gene52542.t1 AT1G10450 40.909 110 54 3 96 198 82 187 4.72e-15 73.9
MS.gene52542.t1 AT1G10450 37.805 164 93 4 8 170 33 188 6.94e-20 87.8
MS.gene52542.t1 AT1G10450 40.909 110 54 3 96 198 31 136 5.57e-15 73.6
MS.gene52542.t1 AT1G10450 37.805 164 93 4 8 170 33 188 6.94e-20 87.8
MS.gene52542.t1 AT1G10450 40.909 110 54 3 96 198 31 136 5.57e-15 73.6
MS.gene52542.t1 AT1G24250 29.936 157 93 2 27 167 33 188 3.24e-19 83.6
MS.gene52542.t1 AT1G24200 35.220 159 95 3 3 161 9 159 2.62e-18 79.7
MS.gene52542.t1 AT1G24200 48.052 77 39 1 91 167 7 82 4.78e-14 68.6
MS.gene52542.t1 AT1G59890 37.013 154 90 3 8 161 45 191 3.52e-18 83.2
MS.gene52542.t1 AT1G59890 54.286 70 31 1 98 167 45 113 2.97e-16 77.4
MS.gene52542.t1 AT1G59890 37.013 154 90 3 8 161 45 191 3.59e-18 83.2
MS.gene52542.t1 AT1G59890 54.286 70 31 1 98 167 45 113 2.89e-16 77.4
MS.gene52542.t1 AT1G59890 37.013 154 90 3 8 161 45 191 3.87e-18 82.8
MS.gene52542.t1 AT1G59890 54.286 70 31 1 98 167 45 113 3.00e-16 77.4
MS.gene52542.t1 AT1G59890 37.013 154 90 3 8 161 45 191 3.99e-18 82.8
MS.gene52542.t1 AT1G59890 54.286 70 31 1 98 167 45 113 3.00e-16 77.4
MS.gene52542.t1 AT5G15025 54.054 74 33 1 94 167 43 115 2.73e-17 75.1
MS.gene52542.t1 AT5G15025 47.059 85 39 2 4 88 43 121 1.59e-12 62.4
MS.gene52542.t1 AT1G23810 29.167 168 113 2 5 167 11 177 3.27e-16 75.1
MS.gene52542.t1 AT1G70030 42.609 115 55 4 2 114 16 121 5.90e-16 71.6
MS.gene52542.t1 AT1G70030 35.802 162 61 5 2 161 16 136 2.35e-15 70.5
MS.gene52542.t1 AT1G27260 31.056 161 108 3 6 165 1 159 7.55e-15 71.2
MS.gene52542.t1 AT4G12020 47.222 72 36 1 96 167 306 375 4.41e-13 68.2
MS.gene52542.t1 AT4G12020 41.667 84 46 2 1 84 301 381 1.58e-12 66.6
MS.gene52542.t1 AT4G12020 47.222 72 36 1 96 167 306 375 4.53e-13 68.2
MS.gene52542.t1 AT4G12020 41.667 84 46 2 1 84 301 381 1.62e-12 66.6
MS.gene52542.t1 AT4G12020 47.222 72 36 1 96 167 306 375 4.53e-13 68.2
MS.gene52542.t1 AT4G12020 41.667 84 46 2 1 84 301 381 1.62e-12 66.6
MS.gene52542.t1 AT4G12020 47.222 72 36 1 96 167 306 375 4.55e-13 68.2
MS.gene52542.t1 AT4G12020 41.667 84 46 2 1 84 301 381 1.63e-12 66.6
MS.gene52542.t1 AT4G12020 47.222 72 36 1 96 167 306 375 4.57e-13 68.2
MS.gene52542.t1 AT4G12020 41.667 84 46 2 1 84 301 381 1.63e-12 66.6
MS.gene52542.t1 AT4G12020 47.222 72 36 1 96 167 306 375 4.59e-13 68.2
MS.gene52542.t1 AT4G12020 41.667 84 46 2 1 84 301 381 1.64e-12 66.6
MS.gene52542.t1 AT4G12020 47.222 72 36 1 96 167 306 375 4.67e-13 68.2
MS.gene52542.t1 AT4G12020 41.667 84 46 2 1 84 301 381 1.72e-12 66.6
MS.gene52542.t1 AT4G12020 47.222 72 36 1 96 167 239 308 4.93e-13 68.2
MS.gene52542.t1 AT4G12020 41.667 84 46 2 1 84 234 314 1.82e-12 66.2
MS.gene52542.t1 AT4G12020 47.222 72 36 1 96 167 306 375 4.94e-13 68.2
MS.gene52542.t1 AT4G12020 41.667 84 46 2 1 84 301 381 1.82e-12 66.2
MS.gene52542.t1 AT4G12020 47.222 72 36 1 96 167 306 375 5.02e-13 68.2
MS.gene52542.t1 AT4G12020 41.667 84 46 2 1 84 301 381 1.83e-12 66.2
MS.gene52542.t1 AT4G12020 47.222 72 36 1 96 167 306 375 5.02e-13 68.2
MS.gene52542.t1 AT4G12020 41.667 84 46 2 1 84 301 381 1.83e-12 66.2
MS.gene52542.t1 AT1G27220 45.714 70 37 1 98 167 14 82 7.61e-13 65.1
MS.gene52542.t1 AT1G27220 37.500 112 68 2 3 114 9 118 4.36e-11 60.1
MS.gene52542.t1 AT1G27250 40.964 83 47 2 98 180 21 101 1.99e-11 60.1

Find 39 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATCATGCTTAATGTATTT+TGG 0.196702 3.4:+1563809 None:intergenic
AGGGCATACAGATTTAATTT+TGG 0.197778 3.4:-1564573 MS.gene52542:CDS
ATTTCGAAATTAAATCTTCA+TGG 0.307910 3.4:+1564840 None:intergenic
GGTGTGATTCGATATTTCTT+TGG 0.344227 3.4:+1564533 None:intergenic
AAAGGAAAACGCCTACTTGC+TGG 0.351938 3.4:-1563771 MS.gene52542:CDS
ACAAATTATGAAGGATTTCA+AGG 0.367445 3.4:-1564918 MS.gene52542:CDS
GTAGGTTTGGATTTGAGAAA+AGG 0.371809 3.4:-1564961 MS.gene52542:CDS
ATTAAGAGTGTACGAGTTGT+TGG 0.382597 3.4:-1564867 MS.gene52542:CDS
CAATAACCAGATTACTCAAC+TGG 0.422972 3.4:+1563707 None:intergenic
AAAGTAAAAGATGTGTTTCA+TGG 0.431621 3.4:-1564701 MS.gene52542:CDS
TAGGTTTGGATTTGAGAAAA+GGG 0.438311 3.4:-1564960 MS.gene52542:CDS
TAACCGGTGTCAAGATGAAC+TGG 0.438767 3.4:+1564509 None:intergenic
ATTGTTAAGGATTTCAAGGC+TGG 0.451018 3.4:-1564644 MS.gene52542:CDS
GCAGCAGTAAAACGTAGGTT+TGG 0.457719 3.4:-1564974 MS.gene52542:CDS
TCGATATTTCTTTGGCAAGA+AGG 0.460534 3.4:+1564541 None:intergenic
AAAACGCCTACTTGCTGGAT+TGG 0.477038 3.4:-1563766 MS.gene52542:CDS
AAATTAAATCTGTATGCCCT+TGG 0.494500 3.4:+1564576 None:intergenic
ATATGAAATCAAACTTCCAT+TGG 0.495726 3.4:-1564795 MS.gene52542:CDS
TCATCGTCGTCACGATCCAA+TGG 0.515446 3.4:+1564779 None:intergenic
GGCTGAAAGAATTGATGCTA+GGG 0.533185 3.4:-1564897 MS.gene52542:CDS
AGGCTGAAAGAATTGATGCT+AGG 0.540112 3.4:-1564898 MS.gene52542:CDS
AGTTTGATTTCATATTCAGT+TGG 0.545841 3.4:+1564803 None:intergenic
ATAAGTGTTGCTGCGGCAAG+AGG 0.559399 3.4:-1564611 MS.gene52542:CDS
AGAGGGAATGATCTGGTCCA+AGG 0.570236 3.4:-1564593 MS.gene52542:CDS
TGTGTTTCATGGTAAGAATG+AGG 0.572647 3.4:-1564690 MS.gene52542:CDS
TGCGGCAAGAGGGAATGATC+TGG 0.572764 3.4:-1564600 MS.gene52542:CDS
AAGATGAAGAAGCTCTCAGT+TGG 0.573928 3.4:-1565016 MS.gene52542:CDS
GACGATGATGACGAACTACA+AGG 0.589561 3.4:-1564764 MS.gene52542:CDS
CTTTAGACATCTACACTATG+AGG 0.594856 3.4:-1563741 MS.gene52542:CDS
TAAGTGTTGCTGCGGCAAGA+GGG 0.604842 3.4:-1564610 MS.gene52542:CDS
GAGGGAATGATCTGGTCCAA+GGG 0.617326 3.4:-1564592 MS.gene52542:CDS
AAAGCACCAATCCAGCAAGT+AGG 0.620337 3.4:+1563760 None:intergenic
AGAGTGTACGAGTTGTTGGA+CGG 0.625456 3.4:-1564863 MS.gene52542:CDS
AATTGATATAAGTGTTGCTG+CGG 0.644511 3.4:-1564618 MS.gene52542:CDS
TAGAACTCGAGTTCCTCCAA+AGG 0.651017 3.4:-1563789 MS.gene52542:CDS
TAGACATCTACACTATGAGG+TGG 0.658182 3.4:-1563738 MS.gene52542:CDS
CCTCCAGTTCATCTTGACAC+CGG 0.659824 3.4:-1564512 MS.gene52542:intron
CCGGTGTCAAGATGAACTGG+AGG 0.683241 3.4:+1564512 None:intergenic
TACTCGCAGCAGTAAAACGT+AGG 0.698980 3.4:-1564979 MS.gene52542:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAATATATAAATAA+TGG + chr3.4:1564256-1564275 None:intergenic 0.0%
!! ATAAATATATAAATAATGGT+AGG + chr3.4:1564252-1564271 None:intergenic 10.0%
!!! TGAGTTTTTAAAAATTGTTA+AGG - chr3.4:1564074-1564093 MS.gene52542:intron 15.0%
!! AAAAATTGTTAAGGATTTCA+AGG - chr3.4:1564083-1564102 MS.gene52542:intron 20.0%
!! ATTTCGAAATTAAATCTTCA+TGG + chr3.4:1563894-1563913 None:intergenic 20.0%
!! GCTATAAAGATTCAATAAAT+TGG - chr3.4:1564292-1564311 MS.gene52542:intron 20.0%
!!! ATCTTTTCTACAAATTATGA+AGG - chr3.4:1563804-1563823 MS.gene52542:CDS 20.0%
! AAAGTAAAAGATGTGTTTCA+TGG - chr3.4:1564030-1564049 MS.gene52542:intron 25.0%
! ACAAATTATGAAGGATTTCA+AGG - chr3.4:1563813-1563832 MS.gene52542:CDS 25.0%
! ATATGAAATCAAACTTCCAT+TGG - chr3.4:1563936-1563955 MS.gene52542:intron 25.0%
! GATTAAGTTTAACGATAAGT+TGG - chr3.4:1564357-1564376 MS.gene52542:intron 25.0%
! TTTGAGAAAAGGGAAAAATA+TGG - chr3.4:1563781-1563800 MS.gene52542:CDS 25.0%
!! AGTTTGATTTCATATTCAGT+TGG + chr3.4:1563931-1563950 None:intergenic 25.0%
!! AGTTTTTACAAGTGAACATT+AGG + chr3.4:1564533-1564552 None:intergenic 25.0%
!! ATCTTTGGAGAATTAAAAGT+AGG - chr3.4:1564473-1564492 MS.gene52542:intron 25.0%
!! CTATCATGCTTAATGTATTT+TGG + chr3.4:1564925-1564944 None:intergenic 25.0%
!! TATTTCTTTTCTTCTGAACA+TGG - chr3.4:1564790-1564809 MS.gene52542:CDS 25.0%
!! TCTTTGGAGAATTAAAAGTA+GGG - chr3.4:1564474-1564493 MS.gene52542:intron 25.0%
!! TTCATGCATTTTATGTCTAT+AGG - chr3.4:1564505-1564524 MS.gene52542:intron 25.0%
AAACTAAAAAACACACAGAG+TGG + chr3.4:1564761-1564780 None:intergenic 30.0%
AAATTAAATCTGTATGCCCT+TGG + chr3.4:1564158-1564177 None:intergenic 30.0%
AACATGTAAAGTGTGTTTAG+GGG - chr3.4:1564885-1564904 MS.gene52542:CDS 30.0%
ACAACATGTAAAGTGTGTTT+AGG - chr3.4:1564883-1564902 MS.gene52542:CDS 30.0%
AGAAGTGAGTGTAAGATTAA+GGG - chr3.4:1564335-1564354 MS.gene52542:intron 30.0%
ATATGACATGTATCAACCTT+AGG - chr3.4:1564632-1564651 MS.gene52542:CDS 30.0%
CAACATGTAAAGTGTGTTTA+GGG - chr3.4:1564884-1564903 MS.gene52542:CDS 30.0%
CAGGTTTACAAAATATTGTC+TGG + chr3.4:1564595-1564614 None:intergenic 30.0%
TAAACACACTTTACATGTTG+TGG + chr3.4:1564884-1564903 None:intergenic 30.0%
TAGGTTTGGATTTGAGAAAA+GGG - chr3.4:1563771-1563790 MS.gene52542:CDS 30.0%
TTCATGTATCAAACAGATGA+AGG - chr3.4:1564446-1564465 MS.gene52542:intron 30.0%
TTCTCTCAATACAATAACGA+TGG + chr3.4:1564319-1564338 None:intergenic 30.0%
! AATTGATATAAGTGTTGCTG+CGG - chr3.4:1564113-1564132 MS.gene52542:intron 30.0%
! CTTTGGAGAATTAAAAGTAG+GGG - chr3.4:1564475-1564494 MS.gene52542:intron 30.0%
!! AAGTTTAACGATAAGTTGGT+AGG - chr3.4:1564361-1564380 MS.gene52542:intron 30.0%
!! AGGGCATACAGATTTAATTT+TGG - chr3.4:1564158-1564177 MS.gene52542:intron 30.0%
!! AGTTTAACGATAAGTTGGTA+GGG - chr3.4:1564362-1564381 MS.gene52542:intron 30.0%
!! GGCATACAGATTTAATTTTG+GGG - chr3.4:1564160-1564179 MS.gene52542:intron 30.0%
!! GGGCATACAGATTTAATTTT+GGG - chr3.4:1564159-1564178 MS.gene52542:intron 30.0%
!! TTTTATTCTAGAGACAGCAA+GGG + chr3.4:1564688-1564707 None:intergenic 30.0%
!! TTTTTATTCTAGAGACAGCA+AGG + chr3.4:1564689-1564708 None:intergenic 30.0%
AATAATGGTAGGCTACTAAC+CGG + chr3.4:1564241-1564260 None:intergenic 35.0%
ACAGATGAAGGCTATATCTT+TGG - chr3.4:1564458-1564477 MS.gene52542:intron 35.0%
ATATTTCCCCTAAACCTTGA+AGG + chr3.4:1564389-1564408 None:intergenic 35.0%
ATGATAATTCCTTCGATTGC+AGG + chr3.4:1564614-1564633 None:intergenic 35.0%
ATTGTTAAGGATTTCAAGGC+TGG - chr3.4:1564087-1564106 MS.gene52542:intron 35.0%
CAAAATATTGTCTGGATGCA+AGG + chr3.4:1564587-1564606 None:intergenic 35.0%
CTTTAGACATCTACACTATG+AGG - chr3.4:1564990-1565009 MS.gene52542:CDS 35.0%
GAGAAGTGAGTGTAAGATTA+AGG - chr3.4:1564334-1564353 MS.gene52542:intron 35.0%
GGTGTGATTCGATATTTCTT+TGG + chr3.4:1564201-1564220 None:intergenic 35.0%
GTAGGTTTGGATTTGAGAAA+AGG - chr3.4:1563770-1563789 MS.gene52542:CDS 35.0%
TCGATATTTCTTTGGCAAGA+AGG + chr3.4:1564193-1564212 None:intergenic 35.0%
TGAGTGTCAAATGAATCCTA+AGG + chr3.4:1564651-1564670 None:intergenic 35.0%
TGTGTTTCATGGTAAGAATG+AGG - chr3.4:1564041-1564060 MS.gene52542:intron 35.0%
TGTTGTGGATGAAAGATTGA+TGG + chr3.4:1564869-1564888 None:intergenic 35.0%
! ATTAAGAGTGTACGAGTTGT+TGG - chr3.4:1563864-1563883 MS.gene52542:intron 35.0%
! TTTTGTAAACCTGCAATCGA+AGG - chr3.4:1564602-1564621 MS.gene52542:CDS 35.0%
AGGCTGAAAGAATTGATGCT+AGG - chr3.4:1563833-1563852 MS.gene52542:intron 40.0%
GGCTGAAAGAATTGATGCTA+GGG - chr3.4:1563834-1563853 MS.gene52542:intron 40.0%
TAGACATCTACACTATGAGG+TGG - chr3.4:1564993-1565012 MS.gene52542:CDS 40.0%
TTTGTTCAAACAACCCGAGA+AGG - chr3.4:1564815-1564834 MS.gene52542:CDS 40.0%
AAAGGAAAACGCCTACTTGC+TGG - chr3.4:1564960-1564979 MS.gene52542:CDS 45.0%
AGAGACAGCAAGGGAGAAAT+TGG + chr3.4:1564679-1564698 None:intergenic 45.0%
AGAGTGTACGAGTTGTTGGA+CGG - chr3.4:1563868-1563887 MS.gene52542:intron 45.0%
CTTTCAAAACCCCACCTTCT+CGG + chr3.4:1564832-1564851 None:intergenic 45.0%
GCAGCAGTAAAACGTAGGTT+TGG - chr3.4:1563757-1563776 MS.gene52542:CDS 45.0%
GTAGGGTCCTTCAAGGTTTA+GGG - chr3.4:1564379-1564398 MS.gene52542:intron 45.0%
TACTCGCAGCAGTAAAACGT+AGG - chr3.4:1563752-1563771 MS.gene52542:CDS 45.0%
TAGAACTCGAGTTCCTCCAA+AGG - chr3.4:1564942-1564961 MS.gene52542:CDS 45.0%
TAGGGTCCTTCAAGGTTTAG+GGG - chr3.4:1564380-1564399 MS.gene52542:intron 45.0%
TTCAAACAACCCGAGAAGGT+GGG - chr3.4:1564819-1564838 MS.gene52542:CDS 45.0%
TTTCAAAACCCCACCTTCTC+GGG + chr3.4:1564831-1564850 None:intergenic 45.0%
! AAAACGCCTACTTGCTGGAT+TGG - chr3.4:1564965-1564984 MS.gene52542:CDS 45.0%
! AAAGCACCAATCCAGCAAGT+AGG + chr3.4:1564974-1564993 None:intergenic 45.0%
! AAGTAGGCGTTTTCCTTTGG+AGG + chr3.4:1564958-1564977 None:intergenic 45.0%
! AGCAAGTAGGCGTTTTCCTT+TGG + chr3.4:1564961-1564980 None:intergenic 45.0%
! GACGATGATGACGAACTACA+AGG - chr3.4:1563967-1563986 MS.gene52542:intron 45.0%
! TAACCGGTGTCAAGATGAAC+TGG + chr3.4:1564225-1564244 None:intergenic 45.0%
!! TAAGTTGGTAGGGTCCTTCA+AGG - chr3.4:1564372-1564391 MS.gene52542:intron 45.0%
AGAGGGAATGATCTGGTCCA+AGG - chr3.4:1564138-1564157 MS.gene52542:intron 50.0%
CCTCCAGTTCATCTTGACAC+CGG - chr3.4:1564219-1564238 MS.gene52542:intron 50.0%
GAGGGAATGATCTGGTCCAA+GGG - chr3.4:1564139-1564158 MS.gene52542:intron 50.0%
GGTAGGGTCCTTCAAGGTTT+AGG - chr3.4:1564378-1564397 MS.gene52542:intron 50.0%
GTTCAAACAACCCGAGAAGG+TGG - chr3.4:1564818-1564837 MS.gene52542:CDS 50.0%
TCAAACAACCCGAGAAGGTG+GGG - chr3.4:1564820-1564839 MS.gene52542:CDS 50.0%
TCATCGTCGTCACGATCCAA+TGG + chr3.4:1563955-1563974 None:intergenic 50.0%
! ATAAGTGTTGCTGCGGCAAG+AGG - chr3.4:1564120-1564139 MS.gene52542:intron 50.0%
! TAAGTGTTGCTGCGGCAAGA+GGG - chr3.4:1564121-1564140 MS.gene52542:intron 50.0%
TGCGGCAAGAGGGAATGATC+TGG - chr3.4:1564131-1564150 MS.gene52542:intron 55.0%
! CCGGTGTCAAGATGAACTGG+AGG + chr3.4:1564222-1564241 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 1563718 1565035 1563718 ID=MS.gene52542
chr3.4 mRNA 1563718 1565035 1563718 ID=MS.gene52542.t1;Parent=MS.gene52542
chr3.4 exon 1564513 1565035 1564513 ID=MS.gene52542.t1.exon1;Parent=MS.gene52542.t1
chr3.4 CDS 1564513 1565035 1564513 ID=cds.MS.gene52542.t1;Parent=MS.gene52542.t1
chr3.4 exon 1563718 1563848 1563718 ID=MS.gene52542.t1.exon2;Parent=MS.gene52542.t1
chr3.4 CDS 1563718 1563848 1563718 ID=cds.MS.gene52542.t1;Parent=MS.gene52542.t1
Gene Sequence

>MS.gene52542

ATGAAGAAGCTCTCAGTTGGTGATGCATTATCGTTACTCGCAGCAGTAAAACGTAGGTTTGGATTTGAGAAAAGGGAAAAATATGGATCTTTTCTACAAATTATGAAGGATTTCAAGGCTGAAAGAATTGATGCTAGGGATGTCAAATTAAGAGTGTACGAGTTGTTGGACGGCCATGAAGATTTAATTTCGAAATTCAACATCTTCTTGCCAACTGAATATGAAATCAAACTTCCATTGGATCGTGACGACGATGATGACGAACTACAAGGTCATATGTTAGAGACAAAAGATGCATTTGCATTTCTCGAGAAAGTAAAAGATGTGTTTCATGGTAAGAATGAGGAAAAGTATAATGAGTTTTTAAAAATTGTTAAGGATTTCAAGGCTGGAAGAATTGATATAAGTGTTGCTGCGGCAAGAGGGAATGATCTGGTCCAAGGGCATACAGATTTAATTTTGGGGTTCAACGCCTTCTTGCCAAAGAAATATCGAATCACACCTCCAGTTCATCTTGACACCGGTTAGTAGCCTACCATTATTTATATATTTATTTTTATTTATGCAGTTTTTTGCTATAAAGATTCAATAAATTGGTCCATCGTTATTGTATTGAGAGAAGTGAGTGTAAGATTAAGGGATTAAGTTTAACGATAAGTTGGTAGGGTCCTTCAAGGTTTAGGGGAAATATTTTCTTTTGTACAAGTTGATGATAGAATAGAAATATTTTCATGTATCAAACAGATGAAGGCTATATCTTTGGAGAATTAAAAGTAGGGGTTTGCAGTTCATGCATTTTATGTCTATAGGAACCTAATGTTCACTTGTAAAAACTGTCTTGATTAAAAGAAAATATAGCAGAAGCTCCTTGCATCCAGACAATATTTTGTAAACCTGCAATCGAAGGAATTATCATATGACATGTATCAACCTTAGGATTCATTTGACACTCATATCTCCAATTTCTCCCTTGCTGTCTCTAGAATAAAAACAAGTTGTAATCTGTAAGTCTAAGCTTGAAATCAAATAAAAGAAAGCATCCACTCTGTGTGTTTTTTAGTTTGTGTTTTCATATTTCTTTTCTTCTGAACATGGCTTTTGTTCAAACAACCCGAGAAGGTGGGGTTTTGAAAGCAACTCTTTGTATGCCATCAATCTTTCATCCACAACATGTAAAGTGTGTTTAGGGGATGATAACGAACTGCCAAAATACATTAAGCATGATAGAACTCGAGTTCCTCCAAAGGAAAACGCCTACTTGCTGGATTGGTGCTTTAGACATCTACACTATGAGGTGGATCTTTCTCCAGTTGAGTAA
Protein sequence

>MS.gene52542.t1

MKKLSVGDALSLLAAVKRRFGFEKREKYGSFLQIMKDFKAERIDARDVKLRVYELLDGHEDLISKFNIFLPTEYEIKLPLDRDDDDDELQGHMLETKDAFAFLEKVKDVFHGKNEEKYNEFLKIVKDFKAGRIDISVAAARGNDLVQGHTDLILGFNAFLPKKYRITPPVHLDTGDDNELPKYIKHDRTRVPPKENAYLLDWCFRHLHYEVDLSPVE