AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52548

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52548.t1 MTR_4g059560 93.333 90 6 0 14 103 239 328 1.88e-56 178
MS.gene52548.t1 MTR_4g059560 93.333 90 6 0 14 103 239 328 1.34e-55 178
MS.gene52548.t1 MTR_2g094090 83.333 90 15 0 14 103 241 330 5.42e-49 159
MS.gene52548.t1 MTR_2g094090 83.333 90 15 0 14 103 241 330 4.34e-48 158
MS.gene52548.t1 MTR_1g040875 38.776 98 59 1 19 115 144 241 2.61e-17 76.3
MS.gene52548.t1 MTR_3g072320 42.169 83 46 1 19 99 128 210 1.63e-16 74.3
MS.gene52548.t1 MTR_4g114670 37.037 81 51 0 19 99 130 210 3.99e-16 73.2
MS.gene52548.t1 MTR_8g024600 37.037 81 51 0 19 99 53 133 6.09e-16 72.4
MS.gene52548.t1 MTR_5g067150 43.210 81 46 0 19 99 128 208 6.93e-16 72.4
MS.gene52548.t1 MTR_5g067150 43.210 81 46 0 19 99 128 208 7.45e-16 72.4
MS.gene52548.t1 MTR_8g024590 37.037 81 51 0 19 99 136 216 7.57e-16 72.4
MS.gene52548.t1 MTR_8g024600 37.037 81 51 0 19 99 136 216 7.58e-16 72.4
MS.gene52548.t1 MTR_5g067150 43.210 81 46 0 19 99 128 208 7.67e-16 72.4
MS.gene52548.t1 MTR_4g114670 37.037 81 51 0 19 99 130 210 8.01e-16 72.0
MS.gene52548.t1 MTR_3g466400 39.759 83 48 2 19 99 132 214 1.11e-15 72.0
MS.gene52548.t1 MTR_2g016340 40.964 83 47 1 19 99 130 212 1.72e-15 71.2
MS.gene52548.t1 MTR_2g049790 40.230 87 48 2 19 102 142 227 2.41e-15 70.9
MS.gene52548.t1 MTR_6g012990 43.210 81 45 1 19 99 138 217 3.09e-15 70.5
MS.gene52548.t1 MTR_6g048250 43.210 81 45 1 19 99 138 217 3.16e-15 70.5
MS.gene52548.t1 MTR_6g048250 43.210 81 45 1 19 99 138 217 3.34e-15 70.5
MS.gene52548.t1 MTR_6g012990 43.210 81 45 1 19 99 138 217 3.52e-15 70.5
MS.gene52548.t1 MTR_6g048250 43.210 81 45 1 19 99 138 217 4.36e-15 70.1
MS.gene52548.t1 MTR_4g029020 39.759 83 48 1 19 99 130 212 9.25e-15 69.3
MS.gene52548.t1 MTR_3g099920 39.506 81 48 1 19 99 138 217 1.68e-14 68.6
MS.gene52548.t1 MTR_4g006970 38.372 86 51 1 19 102 138 223 2.23e-14 68.2
MS.gene52548.t1 MTR_4g128820 38.272 81 49 1 19 99 129 208 2.40e-14 68.2
MS.gene52548.t1 MTR_5g088350 37.349 83 50 1 19 99 132 214 3.59e-14 67.4
MS.gene52548.t1 MTR_5g088350 37.349 83 50 1 19 99 132 214 3.63e-14 67.4
MS.gene52548.t1 MTR_5g088350 37.349 83 50 1 19 99 132 214 3.63e-14 67.4
MS.gene52548.t1 MTR_1g013700 39.759 83 48 1 19 99 131 213 4.51e-14 67.4
MS.gene52548.t1 MTR_4g107280 41.414 99 50 3 4 99 161 254 6.00e-14 66.6
MS.gene52548.t1 MTR_4g107280 41.414 99 50 3 4 99 200 293 6.34e-14 66.6
MS.gene52548.t1 MTR_2g105010 36.047 86 53 1 19 102 132 217 7.25e-14 66.6
MS.gene52548.t1 MTR_1g080020 42.529 87 48 2 19 105 128 212 1.08e-13 65.5
MS.gene52548.t1 MTR_7g116390 37.931 87 54 0 17 103 134 220 1.33e-13 65.5
MS.gene52548.t1 MTR_1g048630 36.735 98 61 1 19 116 124 220 1.37e-13 65.9
MS.gene52548.t1 MTR_4g131060 36.782 87 53 1 19 103 136 222 1.68e-13 65.5
MS.gene52548.t1 MTR_7g072575 38.554 83 49 1 19 99 130 212 1.81e-13 65.5
MS.gene52548.t1 MTR_5g075060 37.349 83 50 1 19 99 130 212 1.89e-13 65.5
MS.gene52548.t1 MTR_8g079560 41.379 87 40 3 19 99 138 219 2.37e-13 65.1
MS.gene52548.t1 MTR_1g076370 35.354 99 62 2 19 115 141 239 4.16e-13 64.3
MS.gene52548.t1 MTR_1g034030 40.230 87 41 3 19 99 139 220 4.30e-13 64.3
MS.gene52548.t1 MTR_1g103760 38.554 83 49 1 19 99 130 212 5.00e-13 64.3
MS.gene52548.t1 MTR_3g437510 37.805 82 50 1 19 99 130 211 5.61e-13 63.2
MS.gene52548.t1 MTR_5g075100 35.294 85 53 1 17 99 140 224 7.05e-13 63.9
MS.gene52548.t1 MTR_2g045470 34.653 101 62 2 19 116 59 158 1.18e-12 63.2
MS.gene52548.t1 MTR_2g045470 34.653 101 62 2 19 116 139 238 1.25e-12 63.2
MS.gene52548.t1 MTR_4g086855 40.230 87 41 3 19 99 43 124 1.40e-12 62.4
MS.gene52548.t1 MTR_5g018050 40.909 88 41 3 18 99 132 214 1.49e-12 62.0
MS.gene52548.t1 MTR_5g064540 41.379 87 40 3 19 99 119 200 1.57e-12 62.0
MS.gene52548.t1 MTR_5g018050 40.909 88 41 3 18 99 132 214 1.60e-12 62.8
MS.gene52548.t1 MTR_5g013550 40.909 88 41 3 18 99 120 202 1.71e-12 62.4
MS.gene52548.t1 MTR_5g018050 40.909 88 41 3 18 99 99 181 1.74e-12 62.4
MS.gene52548.t1 MTR_2g016280 33.333 93 57 2 9 99 105 194 1.89e-12 62.8
MS.gene52548.t1 MTR_4g086855 40.230 87 41 3 19 99 138 219 2.20e-12 62.4
MS.gene52548.t1 MTR_5g064540 41.379 87 40 3 19 99 119 200 2.45e-12 62.0
MS.gene52548.t1 MTR_1g034030 39.773 88 42 3 18 99 138 220 2.51e-12 62.0
MS.gene52548.t1 MTR_8g086380 33.735 83 53 1 19 99 144 226 2.58e-12 62.4
MS.gene52548.t1 MTR_3g466480 34.940 83 52 1 19 99 139 221 3.51e-12 62.0
MS.gene52548.t1 MTR_4g099240 39.773 88 42 3 18 99 119 201 3.76e-12 61.6
MS.gene52548.t1 MTR_8g095330 40.230 87 41 3 19 99 120 201 4.03e-12 61.6
MS.gene52548.t1 MTR_3g097320 40.230 87 41 3 19 99 119 200 4.19e-12 61.6
MS.gene52548.t1 MTR_2g006330 39.773 88 42 3 18 99 42 124 9.01e-12 60.1
MS.gene52548.t1 MTR_3g086940 40.909 88 41 3 18 99 119 201 9.22e-12 60.5
MS.gene52548.t1 MTR_8g089975 39.773 88 42 3 18 99 42 124 1.05e-11 60.1
MS.gene52548.t1 MTR_2g006330 39.773 88 42 3 18 99 118 200 1.32e-11 60.1
MS.gene52548.t1 MTR_8g089975 39.773 88 42 3 18 99 118 200 1.56e-11 59.7
MS.gene52548.t1 MTR_7g073520 37.374 99 54 3 6 101 254 347 1.85e-11 59.7
MS.gene52548.t1 MTR_4g019410 35.227 88 52 3 18 102 136 221 4.54e-11 58.5
MS.gene52548.t1 MTR_4g019410 35.227 88 52 3 18 102 136 221 4.67e-11 58.5
MS.gene52548.t1 MTR_6g005210 35.052 97 62 1 19 115 204 299 8.36e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52548.t1 AT3G45240 76.667 90 21 0 14 103 230 319 5.14e-45 150
MS.gene52548.t1 AT3G45240 76.667 90 21 0 14 103 230 319 5.14e-45 150
MS.gene52548.t1 AT3G45240 76.667 90 18 1 14 103 230 316 2.53e-43 145
MS.gene52548.t1 AT5G60550 73.913 92 22 1 14 103 229 320 1.35e-42 144
MS.gene52548.t1 AT3G23000 41.463 82 47 1 19 99 145 226 1.96e-16 73.9
MS.gene52548.t1 AT4G14580 42.169 83 46 1 19 99 141 223 2.32e-16 73.9
MS.gene52548.t1 AT5G35410 39.506 81 49 0 19 99 130 210 2.36e-16 73.6
MS.gene52548.t1 AT5G35410 39.506 81 49 0 19 99 130 210 2.49e-16 73.6
MS.gene52548.t1 AT4G24400 41.975 81 47 0 19 99 128 208 7.20e-16 72.4
MS.gene52548.t1 AT4G24400 41.975 81 47 0 19 99 128 208 7.42e-16 72.4
MS.gene52548.t1 AT3G01090 43.210 81 45 1 19 99 138 217 8.62e-16 72.4
MS.gene52548.t1 AT3G01090 43.210 81 45 1 19 99 138 217 8.62e-16 72.4
MS.gene52548.t1 AT3G01090 43.210 81 45 1 19 99 161 240 8.69e-16 72.4
MS.gene52548.t1 AT2G26980 42.857 84 44 2 19 99 133 215 8.72e-16 72.0
MS.gene52548.t1 AT2G26980 42.857 84 44 2 19 99 143 225 8.81e-16 72.0
MS.gene52548.t1 AT2G26980 40.964 83 47 1 19 99 133 215 9.56e-16 70.9
MS.gene52548.t1 AT2G26980 40.964 83 47 1 19 99 133 215 1.70e-15 71.2
MS.gene52548.t1 AT2G26980 40.964 83 47 1 19 99 133 215 2.02e-15 71.2
MS.gene52548.t1 AT5G57630 40.741 81 47 1 19 99 130 209 3.56e-15 70.5
MS.gene52548.t1 AT5G57630 40.741 81 47 1 19 99 130 209 3.62e-15 70.5
MS.gene52548.t1 AT4G30960 39.080 87 51 1 19 103 142 228 3.81e-15 70.5
MS.gene52548.t1 AT3G29160 41.975 81 46 1 19 99 139 218 3.88e-15 70.1
MS.gene52548.t1 AT3G29160 41.975 81 46 1 19 99 139 218 4.04e-15 70.5
MS.gene52548.t1 AT3G29160 41.975 81 46 1 19 99 139 218 4.04e-15 70.5
MS.gene52548.t1 AT5G01810 39.759 83 48 1 19 99 130 212 5.30e-15 69.7
MS.gene52548.t1 AT5G01810 39.759 83 48 1 19 99 130 212 5.78e-15 69.7
MS.gene52548.t1 AT5G01810 39.759 83 48 1 19 99 130 212 5.78e-15 69.7
MS.gene52548.t1 AT5G57630 40.741 81 47 1 19 99 42 121 7.82e-15 68.9
MS.gene52548.t1 AT5G45820 39.759 83 48 1 19 99 130 212 8.54e-15 69.3
MS.gene52548.t1 AT1G08650 44.318 88 46 3 17 103 134 219 3.40e-14 67.0
MS.gene52548.t1 AT1G08650 44.318 88 46 3 17 103 134 219 3.64e-14 67.0
MS.gene52548.t1 AT5G10930 39.759 83 48 1 19 99 131 213 4.67e-14 67.4
MS.gene52548.t1 AT5G58380 38.554 83 49 1 19 99 130 212 1.24e-13 66.2
MS.gene52548.t1 AT2G25090 34.043 94 53 1 19 103 135 228 1.28e-13 65.9
MS.gene52548.t1 AT1G30270 39.286 84 47 2 19 99 53 135 1.47e-13 65.9
MS.gene52548.t1 AT1G30270 39.286 84 47 2 19 99 150 232 1.58e-13 65.9
MS.gene52548.t1 AT1G30270 39.286 84 47 2 19 99 150 232 1.59e-13 65.9
MS.gene52548.t1 AT5G39440 41.975 81 45 2 19 99 138 216 1.61e-13 65.9
MS.gene52548.t1 AT1G50240 34.234 111 72 1 6 116 110 219 2.07e-13 65.5
MS.gene52548.t1 AT1G50240 34.234 111 72 1 6 116 110 219 2.07e-13 65.5
MS.gene52548.t1 AT5G25110 36.145 83 51 1 19 99 161 243 2.46e-13 65.1
MS.gene52548.t1 AT1G48260 33.333 99 64 1 19 115 130 228 3.54e-13 64.7
MS.gene52548.t1 AT1G48260 33.333 99 64 1 19 115 45 143 3.87e-13 64.3
MS.gene52548.t1 AT1G48260 33.333 99 64 1 19 115 45 143 3.87e-13 64.3
MS.gene52548.t1 AT1G48260 33.333 99 64 1 19 115 45 143 3.87e-13 64.3
MS.gene52548.t1 AT1G48260 33.333 99 64 1 19 115 45 143 3.87e-13 64.3
MS.gene52548.t1 AT1G01140 37.647 85 47 2 19 99 138 220 4.34e-13 64.3
MS.gene52548.t1 AT1G01140 37.647 85 47 2 19 99 138 220 4.35e-13 64.3
MS.gene52548.t1 AT1G01140 37.647 85 47 2 19 99 138 220 4.35e-13 64.3
MS.gene52548.t1 AT2G30360 34.940 83 52 1 19 99 141 223 7.01e-13 63.9
MS.gene52548.t1 AT5G21326 36.145 83 51 1 19 99 132 214 7.38e-13 63.9
MS.gene52548.t1 AT5G66880 41.379 87 40 3 19 99 137 218 7.97e-13 63.5
MS.gene52548.t1 AT5G66880 41.379 87 40 3 19 99 137 218 7.97e-13 63.5
MS.gene52548.t1 AT2G38490 38.554 83 49 1 19 99 146 228 9.19e-13 63.5
MS.gene52548.t1 AT3G08730 36.538 104 64 2 4 107 238 339 1.06e-12 63.5
MS.gene52548.t1 AT3G08730 36.538 104 64 2 4 107 238 339 1.06e-12 63.5
MS.gene52548.t1 AT1G48490 36.697 109 43 2 19 102 948 1055 1.25e-12 63.2
MS.gene52548.t1 AT1G48490 36.697 109 43 2 19 102 947 1054 1.29e-12 63.2
MS.gene52548.t1 AT1G48490 36.697 109 43 2 19 102 947 1054 1.29e-12 63.2
MS.gene52548.t1 AT1G48490 36.697 109 43 2 19 102 947 1054 1.29e-12 63.2
MS.gene52548.t1 AT3G50500 41.379 87 40 3 19 99 138 219 1.48e-12 62.8
MS.gene52548.t1 AT4G33950 40.909 88 41 3 18 99 135 217 1.62e-12 62.8
MS.gene52548.t1 AT4G33950 40.909 88 41 3 18 99 135 217 1.67e-12 62.8
MS.gene52548.t1 AT3G08720 36.538 104 64 2 4 107 244 345 1.69e-12 62.8
MS.gene52548.t1 AT3G08720 36.538 104 64 2 4 107 244 345 1.69e-12 62.8
MS.gene52548.t1 AT3G08720 36.538 104 64 2 4 107 244 345 1.69e-12 62.8
MS.gene52548.t1 AT3G08720 36.538 104 64 2 4 107 244 345 1.69e-12 62.8
MS.gene52548.t1 AT1G60940 40.964 83 46 2 19 99 119 200 2.67e-12 62.0
MS.gene52548.t1 AT1G60940 40.964 83 46 2 19 99 119 200 2.67e-12 62.0
MS.gene52548.t1 AT4G40010 39.773 88 42 3 18 99 118 200 3.54e-12 61.6
MS.gene52548.t1 AT1G78290 40.909 88 41 3 18 99 118 200 3.58e-12 61.6
MS.gene52548.t1 AT1G78290 40.909 88 41 3 18 99 118 200 3.58e-12 61.6
MS.gene52548.t1 AT4G26070 39.506 81 48 1 19 99 185 264 3.70e-12 61.6
MS.gene52548.t1 AT5G40440 35.714 98 62 1 18 115 120 216 4.28e-12 61.6
MS.gene52548.t1 AT5G40440 35.714 98 62 1 18 115 184 280 4.38e-12 61.6
MS.gene52548.t1 AT5G40440 35.714 98 62 1 18 115 184 280 4.38e-12 61.6
MS.gene52548.t1 AT5G40440 35.714 98 62 1 18 115 184 280 4.38e-12 61.6
MS.gene52548.t1 AT5G40440 35.714 98 62 1 18 115 202 298 4.41e-12 61.6
MS.gene52548.t1 AT5G40440 35.714 98 62 1 18 115 202 298 4.41e-12 61.6
MS.gene52548.t1 AT1G29230 34.940 83 52 1 19 99 192 274 4.41e-12 61.6
MS.gene52548.t1 AT1G10940 40.230 87 41 3 19 99 119 200 4.45e-12 61.6
MS.gene52548.t1 AT4G26070 39.506 81 48 1 19 99 186 265 4.47e-12 61.6
MS.gene52548.t1 AT4G26070 39.506 81 48 1 19 99 186 265 4.47e-12 61.6
MS.gene52548.t1 AT1G10940 40.230 87 41 3 19 99 127 208 4.51e-12 61.6
MS.gene52548.t1 AT5G45810 33.735 83 53 1 19 99 146 228 4.80e-12 61.6
MS.gene52548.t1 AT3G50500 40.449 89 45 3 19 99 138 226 5.00e-12 61.2
MS.gene52548.t1 AT4G26070 39.506 81 48 1 19 99 173 252 6.37e-12 60.8
MS.gene52548.t1 AT4G26070 39.506 81 48 1 19 99 186 265 6.74e-12 60.8
MS.gene52548.t1 AT3G04530 41.379 87 47 3 18 103 132 215 9.32e-12 60.5
MS.gene52548.t1 AT3G17510 34.940 83 52 1 19 99 139 221 1.09e-11 60.5
MS.gene52548.t1 AT3G21220 32.520 123 68 3 1 108 158 280 1.22e-11 60.1
MS.gene52548.t1 AT3G21220 32.520 123 68 3 1 108 158 280 1.22e-11 60.1
MS.gene52548.t1 AT1G51660 38.384 99 53 2 18 108 191 289 1.38e-11 60.1
MS.gene52548.t1 AT5G08590 40.230 87 41 3 19 99 119 200 2.25e-11 59.7
MS.gene52548.t1 AT5G63650 40.230 87 41 3 19 99 119 200 2.58e-11 59.3
MS.gene52548.t1 AT3G17510 32.323 99 65 1 19 115 59 157 2.69e-11 59.3
MS.gene52548.t1 AT5G08590 39.773 88 42 3 18 99 42 124 3.66e-11 58.5
MS.gene52548.t1 AT4G29810 36.585 82 51 1 18 99 187 267 5.03e-11 58.5
MS.gene52548.t1 AT4G29810 36.585 82 51 1 18 99 196 276 5.08e-11 58.5
MS.gene52548.t1 AT2G34180 36.145 83 51 1 19 99 175 257 6.64e-11 58.2
MS.gene52548.t1 AT4G29810 36.585 82 51 1 18 99 196 276 8.96e-11 57.8
MS.gene52548.t1 AT1G45160 32.407 108 45 2 19 99 789 895 9.43e-11 57.8
MS.gene52548.t1 AT1G45160 32.407 108 45 2 19 99 789 895 9.44e-11 57.8
MS.gene52548.t1 AT5G56580 36.145 83 52 1 18 100 188 269 9.58e-11 57.8

Find 26 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAACATCATCCTTTGTTT+TGG 0.246990 3.4:-1618816 None:intergenic
TACTTTGTACTGTATGATAT+TGG 0.249189 3.4:+1618748 MS.gene52548:CDS
CGAGTAATCAACAAATTATC+AGG 0.355286 3.4:-1618096 None:intergenic
ACTTTGTACTGTATGATATT+GGG 0.418226 3.4:+1618749 MS.gene52548:CDS
CATTCAGGTGCAGTGAAAAC+AGG 0.428127 3.4:-1618575 None:intergenic
CACCAACCTAAAATACATTC+AGG 0.438538 3.4:-1618590 None:intergenic
GCAGTGAAAACAGGAGTTCC+AGG 0.441173 3.4:-1618566 None:intergenic
GCCCATGTGTCACCAAGAAA+AGG 0.452689 3.4:-1618779 None:intergenic
AAATGAGTTTGTGAAGGTTC+AGG 0.466210 3.4:+1617739 MS.gene52548:CDS
GTTGCGGACACATGGGTTGT+AGG 0.467233 3.4:+1618722 MS.gene52548:CDS
GTCATGGTACAGTGAAGATA+AGG 0.482008 3.4:+1618118 MS.gene52548:CDS
TCATGGTACAGTGAAGATAA+GGG 0.505025 3.4:+1618119 MS.gene52548:CDS
AAGGGATTTCAGTGTCAGCC+AGG 0.505554 3.4:+1618137 MS.gene52548:CDS
GTGGTAAAGTTGCGGACACA+TGG 0.513458 3.4:+1618714 MS.gene52548:CDS
CCCATGTGTCACCAAGAAAA+GGG 0.525928 3.4:-1618778 None:intergenic
GATATGCTTCGACGATCACC+TGG 0.533902 3.4:+1618548 MS.gene52548:CDS
GTTGCATTACCTCACAAGCC+TGG 0.550563 3.4:-1618155 None:intergenic
CAGTGTCAGCCAGGCTTGTG+AGG 0.561168 3.4:+1618146 MS.gene52548:CDS
AATTTGTTGATTACTCGTCA+TGG 0.567037 3.4:+1618102 MS.gene52548:CDS
CCCAAAACAAAGGATGATGT+TGG 0.594242 3.4:+1618815 MS.gene52548:CDS
GAAGACAAATGAGTTTGTGA+AGG 0.637580 3.4:+1617733 MS.gene52548:CDS
TACCTACAGTGGTAAAGTTG+CGG 0.637747 3.4:+1618706 MS.gene52548:CDS
AAGATGCAGACCCAAAACAA+AGG 0.642755 3.4:+1618805 MS.gene52548:CDS
GTAACGCAGAATATAGTACA+TGG 0.644939 3.4:+1618063 MS.gene52548:intron
TGGTAAAGTTGCGGACACAT+GGG 0.652818 3.4:+1618715 MS.gene52548:CDS
GTCCGCAACTTTACCACTGT+AGG 0.722735 3.4:-1618708 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATACTTAAAATATAACAA+AGG + chr3.4:1618200-1618219 MS.gene52548:intron 10.0%
!!! TTTATTTTTTGTATTTTATC+CGG - chr3.4:1617937-1617956 None:intergenic 10.0%
!! AAGTATTTAAATTAACATTC+AGG - chr3.4:1618188-1618207 None:intergenic 15.0%
!! AAAGAAATATTACATGAACA+TGG - chr3.4:1617837-1617856 None:intergenic 20.0%
!! AAATAAGGAATATGATTACT+TGG + chr3.4:1618319-1618338 MS.gene52548:intron 20.0%
!! TACCAAACAAAAAGAAAAAA+TGG - chr3.4:1618430-1618449 None:intergenic 20.0%
!!! GTATTTGTTAATGTGTTTTT+AGG + chr3.4:1618680-1618699 MS.gene52548:intron 20.0%
!!! TACCATTTTTTCTTTTTGTT+TGG + chr3.4:1618425-1618444 MS.gene52548:intron 20.0%
! AACATGATTAAACTATTCCA+AGG - chr3.4:1618015-1618034 None:intergenic 25.0%
! ACTTTGTACTGTATGATATT+GGG + chr3.4:1618749-1618768 MS.gene52548:CDS 25.0%
! CAAATGTATCATGTAAAGAT+TGG - chr3.4:1617861-1617880 None:intergenic 25.0%
! CACACAATGTTTGAAAAATA+AGG + chr3.4:1618304-1618323 MS.gene52548:intron 25.0%
! TACTTTGTACTGTATGATAT+TGG + chr3.4:1618748-1618767 MS.gene52548:CDS 25.0%
! TATGCTTGTAAAATGCATTT+GGG + chr3.4:1618622-1618641 MS.gene52548:intron 25.0%
! TTATGCTTGTAAAATGCATT+TGG + chr3.4:1618621-1618640 MS.gene52548:intron 25.0%
! TTGTATGTTATATATTCTGC+CGG + chr3.4:1617915-1617934 MS.gene52548:intron 25.0%
!! ATGGAACTATTAAAGTTGAT+TGG + chr3.4:1618347-1618366 MS.gene52548:intron 25.0%
!! ATTTTATCATAAACTCTGCA+TGG - chr3.4:1618477-1618496 None:intergenic 25.0%
!! TTAAGTCAATGTTTAGTTTC+AGG - chr3.4:1618388-1618407 None:intergenic 25.0%
ACAATATCATCCAAGTAAAG+TGG - chr3.4:1618228-1618247 None:intergenic 30.0%
ATATGATTACTTGGACGATA+TGG + chr3.4:1618328-1618347 MS.gene52548:intron 30.0%
CGAGTAATCAACAAATTATC+AGG - chr3.4:1618099-1618118 None:intergenic 30.0%
TGTAAAATGCATTTGGGTAA+TGG + chr3.4:1618628-1618647 MS.gene52548:intron 30.0%
! ACACAACTTTTGCATATCAA+TGG + chr3.4:1617888-1617907 MS.gene52548:intron 30.0%
!! AATTTGTTGATTACTCGTCA+TGG + chr3.4:1618102-1618121 MS.gene52548:CDS 30.0%
AAATGAGTTTGTGAAGGTTC+AGG + chr3.4:1617739-1617758 MS.gene52548:CDS 35.0%
CACCAACCTAAAATACATTC+AGG - chr3.4:1618593-1618612 None:intergenic 35.0%
CTGCAAAATGAAAACCATAC+AGG - chr3.4:1618519-1618538 None:intergenic 35.0%
GAAGACAAATGAGTTTGTGA+AGG + chr3.4:1617733-1617752 MS.gene52548:CDS 35.0%
GACTTAATATGAAGCCTGTA+TGG + chr3.4:1618502-1618521 MS.gene52548:intron 35.0%
GTAACGCAGAATATAGTACA+TGG + chr3.4:1618063-1618082 MS.gene52548:intron 35.0%
TAATGGTGTTTATGAAACGC+AGG + chr3.4:1618645-1618664 MS.gene52548:intron 35.0%
TACTTGCGTGATATAGTTTG+TGG + chr3.4:1617799-1617818 MS.gene52548:intron 35.0%
TCATGGTACAGTGAAGATAA+GGG + chr3.4:1618119-1618138 MS.gene52548:CDS 35.0%
! ACTGCACCTGAATGTATTTT+AGG + chr3.4:1618584-1618603 MS.gene52548:CDS 35.0%
! CTGTATGGTTTTCATTTTGC+AGG + chr3.4:1618517-1618536 MS.gene52548:intron 35.0%
!! AACAAAGGTACCACTTTACT+TGG + chr3.4:1618215-1618234 MS.gene52548:intron 35.0%
!! CACCTGAATGTATTTTAGGT+TGG + chr3.4:1618588-1618607 MS.gene52548:intron 35.0%
!! TTGAAGCATCGTACTGTTTA+TGG + chr3.4:1617960-1617979 MS.gene52548:intron 35.0%
!!! CCAACATCATCCTTTGTTTT+GGG - chr3.4:1618818-1618837 None:intergenic 35.0%
!!! TTTTTAGGTGTTACCTACAG+TGG + chr3.4:1618695-1618714 MS.gene52548:intron 35.0%
AAGATGCAGACCCAAAACAA+AGG + chr3.4:1618805-1618824 MS.gene52548:CDS 40.0%
CCCAAAACAAAGGATGATGT+TGG + chr3.4:1618815-1618834 MS.gene52548:CDS 40.0%
CTCTTACTCGTTAAATGCCT+TGG + chr3.4:1617995-1618014 MS.gene52548:intron 40.0%
GTCATGGTACAGTGAAGATA+AGG + chr3.4:1618118-1618137 MS.gene52548:CDS 40.0%
TACCTACAGTGGTAAAGTTG+CGG + chr3.4:1618706-1618725 MS.gene52548:CDS 40.0%
TCTGCATGGAGTATGTCAAA+GGG - chr3.4:1618463-1618482 None:intergenic 40.0%
! TGTATCTTCAACTGTCGCTT+AGG + chr3.4:1618245-1618264 MS.gene52548:intron 40.0%
! TTGGGTGAATACCCTTTTCT+TGG + chr3.4:1618767-1618786 MS.gene52548:CDS 40.0%
!! GCCAACATCATCCTTTGTTT+TGG - chr3.4:1618819-1618838 None:intergenic 40.0%
CATTCAGGTGCAGTGAAAAC+AGG - chr3.4:1618578-1618597 None:intergenic 45.0%
CCCATGTGTCACCAAGAAAA+GGG - chr3.4:1618781-1618800 None:intergenic 45.0%
CTCTGCATGGAGTATGTCAA+AGG - chr3.4:1618464-1618483 None:intergenic 45.0%
CTGCATGGAGTATGTCAAAG+GGG - chr3.4:1618462-1618481 None:intergenic 45.0%
CTTAGCAGTCTCTTCACGTA+AGG - chr3.4:1617776-1617795 None:intergenic 45.0%
TGCATGGAGTATGTCAAAGG+GGG - chr3.4:1618461-1618480 None:intergenic 45.0%
TGGTAAAGTTGCGGACACAT+GGG + chr3.4:1618715-1618734 MS.gene52548:CDS 45.0%
!! ACCCTTTTCTTGGTGACACA+TGG + chr3.4:1618777-1618796 MS.gene52548:CDS 45.0%
!! CCCTTTTCTTGGTGACACAT+GGG + chr3.4:1618778-1618797 MS.gene52548:CDS 45.0%
AAGGGATTTCAGTGTCAGCC+AGG + chr3.4:1618137-1618156 MS.gene52548:CDS 50.0%
ATGGAGTATGTCAAAGGGGG+TGG - chr3.4:1618458-1618477 None:intergenic 50.0%
GATATGCTTCGACGATCACC+TGG + chr3.4:1618548-1618567 MS.gene52548:CDS 50.0%
GCAGTGAAAACAGGAGTTCC+AGG - chr3.4:1618569-1618588 None:intergenic 50.0%
GCCCATGTGTCACCAAGAAA+AGG - chr3.4:1618782-1618801 None:intergenic 50.0%
GTCCGCAACTTTACCACTGT+AGG - chr3.4:1618711-1618730 None:intergenic 50.0%
GTGGTAAAGTTGCGGACACA+TGG + chr3.4:1618714-1618733 MS.gene52548:CDS 50.0%
GTTGCATTACCTCACAAGCC+TGG - chr3.4:1618158-1618177 None:intergenic 50.0%
! GTTGCGGACACATGGGTTGT+AGG + chr3.4:1618722-1618741 MS.gene52548:CDS 55.0%
CAGTGTCAGCCAGGCTTGTG+AGG + chr3.4:1618146-1618165 MS.gene52548:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 1617728 1618841 1617728 ID=MS.gene52548
chr3.4 mRNA 1617728 1618841 1617728 ID=MS.gene52548.t1;Parent=MS.gene52548
chr3.4 exon 1617728 1617778 1617728 ID=MS.gene52548.t1.exon1;Parent=MS.gene52548.t1
chr3.4 CDS 1617728 1617778 1617728 ID=cds.MS.gene52548.t1;Parent=MS.gene52548.t1
chr3.4 exon 1618072 1618167 1618072 ID=MS.gene52548.t1.exon2;Parent=MS.gene52548.t1
chr3.4 CDS 1618072 1618167 1618072 ID=cds.MS.gene52548.t1;Parent=MS.gene52548.t1
chr3.4 exon 1618539 1618605 1618539 ID=MS.gene52548.t1.exon3;Parent=MS.gene52548.t1
chr3.4 CDS 1618539 1618605 1618539 ID=cds.MS.gene52548.t1;Parent=MS.gene52548.t1
chr3.4 exon 1618702 1618841 1618702 ID=MS.gene52548.t1.exon4;Parent=MS.gene52548.t1
chr3.4 CDS 1618702 1618841 1618702 ID=cds.MS.gene52548.t1;Parent=MS.gene52548.t1
Gene Sequence

>MS.gene52548

ATGTGGAAGACAAATGAGTTTGTGAAGGTTCAGGTCGAGCTTGTGCCTTACGTGAAGAGACTGCTAAGAGATACTTGCGTGATATAGTTTGTGGATTAATGTATCTCCATGTTCATGTAATATTTCTTTACCAATCTTTACATGATACATTTGTACACAAACACAACTTTTGCATATCAATGGAAATTTGTATGTTATATATTCTGCCGGATAAAATACAAAAAATAAACTTTTGAAGCATCGTACTGTTTATGGTAAATGCTCATACTCTTACTCGTTAAATGCCTTGGAATAGTTTAATCATGTTACTATAATGTTTAATTATATTTTTATTTGTAACGCAGAATATAGTACATGGAGATATCAAGCCTGATAATTTGTTGATTACTCGTCATGGTACAGTGAAGATAAGGGATTTCAGTGTCAGCCAGGCTTGTGAGGTAATGCAACTACTGAGCCTGAATGTTAATTTAAATACTTAAAATATAACAAAGGTACCACTTTACTTGGATGATATTGTATCTTCAACTGTCGCTTAGGATACATCTTTTTCTTTGTGATACTGCAATATGATTGCACACAATGTTTGAAAAATAAGGAATATGATTACTTGGACGATATGGAACTATTAAAGTTGATTGGTGCACTCTGATAATACCTGAAACTAAACATTGACTTAATCATTTTGCAATATGATTACCATTTTTTCTTTTTGTTTGGTACATAGCCACCCCCTTTGACATACTCCATGCAGAGTTTATGATAAAATCTTATGACTTAATATGAAGCCTGTATGGTTTTCATTTTGCAGGATGATAATGATATGCTTCGACGATCACCTGGAACTCCTGTTTTCACTGCACCTGAATGTATTTTAGGTTGGTGTTTTCATTTTATGCTTGTAAAATGCATTTGGGTAATGGTGTTTATGAAACGCAGGTTCTCACACTTTGTATTTGTTAATGTGTTTTTAGGTGTTACCTACAGTGGTAAAGTTGCGGACACATGGGTTGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCTTTTCTTGGTGACACATGGGCTATAAGATGCAGACCCAAAACAAAGGATGATGTTGGCTGA
Protein sequence

>MS.gene52548.t1

MWKTNEFVKVQVELVPYNIVHGDIKPDNLLITRHGTVKIRDFSVSQACEDDNDMLRRSPGTPVFTAPECILGVTYSGKVADTWVVGVTLYCMILGEYPFLGDTWAIRCRPKTKDDVG