Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52645.t1 | XP_024625249.1 | 96.5 | 426 | 15 | 0 | 1 | 426 | 146 | 571 | 9.10E-233 | 815.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52645.t1 | Q9M219 | 23.2 | 426 | 297 | 8 | 7 | 416 | 135 | 546 | 7.3e-29 | 129.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52645.t1 | G7KVB8 | 96.5 | 426 | 15 | 0 | 1 | 426 | 146 | 571 | 6.6e-233 | 815.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene52645.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52645.t1 | MTR_7g093000 | 96.479 | 426 | 15 | 0 | 1 | 426 | 146 | 571 | 0.0 | 845 |
| MS.gene52645.t1 | MTR_5g084810 | 34.053 | 417 | 266 | 3 | 3 | 418 | 171 | 579 | 3.96e-77 | 251 |
| MS.gene52645.t1 | MTR_7g080620 | 22.171 | 433 | 297 | 13 | 7 | 416 | 159 | 574 | 5.77e-22 | 99.0 |
| MS.gene52645.t1 | MTR_8g005155 | 20.000 | 430 | 307 | 11 | 7 | 416 | 142 | 554 | 1.52e-18 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52645.t1 | AT5G06811 | 46.081 | 421 | 218 | 3 | 1 | 419 | 163 | 576 | 6.21e-123 | 369 |
| MS.gene52645.t1 | AT5G06810 | 42.280 | 421 | 230 | 5 | 1 | 419 | 171 | 580 | 6.90e-112 | 341 |
| MS.gene52645.t1 | AT4G19650 | 38.756 | 418 | 246 | 4 | 3 | 419 | 164 | 572 | 2.12e-96 | 300 |
| MS.gene52645.t1 | AT4G19650 | 38.756 | 418 | 246 | 4 | 3 | 419 | 181 | 589 | 2.52e-96 | 301 |
| MS.gene52645.t1 | AT5G45113 | 34.597 | 422 | 257 | 5 | 3 | 419 | 4 | 411 | 7.23e-83 | 260 |
| MS.gene52645.t1 | AT3G60400 | 23.185 | 427 | 298 | 8 | 6 | 416 | 134 | 546 | 2.54e-32 | 129 |
Find 90 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATGAGGTTTCTTGTAAT+TGG | 0.139207 | 7.2:+16301431 | MS.gene52645:CDS |
| CTTAACTCTTGGAGATTTAT+AGG | 0.169215 | 7.2:-16302211 | None:intergenic |
| AGAAATGGATTGGGCGTTTA+AGG | 0.191927 | 7.2:+16301984 | MS.gene52645:CDS |
| ATCCGTCTGGCCTTCAAGTT+TGG | 0.231486 | 7.2:+16302352 | MS.gene52645:CDS |
| GGATGAGGTTTCTTGTAATT+GGG | 0.245427 | 7.2:+16301432 | MS.gene52645:CDS |
| TGGTGTTCCTCGATCCAAAA+TGG | 0.255150 | 7.2:+16301162 | MS.gene52645:CDS |
| TGCTGTAAGTCCAGGGATTT+TGG | 0.261038 | 7.2:+16301300 | MS.gene52645:CDS |
| TAAATTTGAAAATGGGGTTT+TGG | 0.276379 | 7.2:+16301216 | MS.gene52645:CDS |
| GATTAAGGCTTATGAAGATT+TGG | 0.277999 | 7.2:+16301246 | MS.gene52645:CDS |
| GAAATGAAGAACTGGGTTCT+TGG | 0.309862 | 7.2:+16301856 | MS.gene52645:CDS |
| ATTAAGGCTTATGAAGATTT+GGG | 0.321396 | 7.2:+16301247 | MS.gene52645:CDS |
| AGGTAAGGGAGCTGAGCTTC+AGG | 0.325160 | 7.2:+16302014 | MS.gene52645:CDS |
| TTAAGCCTATGGTTGGCTTA+AGG | 0.351833 | 7.2:+16301887 | MS.gene52645:CDS |
| ATCCTCTTGAAATGAAGAAC+TGG | 0.352452 | 7.2:+16301848 | MS.gene52645:CDS |
| TTAGGTTGTCAATGTATAAC+TGG | 0.352925 | 7.2:+16302235 | MS.gene52645:CDS |
| TAAGCCTATGGTTGGCTTAA+GGG | 0.353016 | 7.2:+16301888 | MS.gene52645:CDS |
| TCCGTCTGGCCTTCAAGTTT+GGG | 0.365084 | 7.2:+16302353 | MS.gene52645:CDS |
| TACCACACTCTGTGTAACTA+TGG | 0.367026 | 7.2:+16301142 | MS.gene52645:CDS |
| ATTATCTGTGCATGCGATAA+TGG | 0.370221 | 7.2:-16302301 | None:intergenic |
| GCAACTCTTCCCAAACTTGA+AGG | 0.394707 | 7.2:-16302362 | None:intergenic |
| GGCAAGACACTGTCGATGAT+TGG | 0.415205 | 7.2:+16301562 | MS.gene52645:CDS |
| ATTGAGTATCTTGTAAAGAA+AGG | 0.421238 | 7.2:+16302147 | MS.gene52645:CDS |
| GACCATGGGGCTGTAAATCC+CGG | 0.423219 | 7.2:+16302264 | MS.gene52645:CDS |
| CGAGTTTCCACAGATTTCAA+TGG | 0.436698 | 7.2:+16301636 | MS.gene52645:CDS |
| GGTGTTCCTCGATCCAAAAT+GGG | 0.437198 | 7.2:+16301163 | MS.gene52645:CDS |
| TTCTTAATCAGAACACAGAT+AGG | 0.440115 | 7.2:+16302112 | MS.gene52645:CDS |
| CAGTCTCACACAGTACTTGC+GGG | 0.440618 | 7.2:+16301742 | MS.gene52645:CDS |
| TGTTAATGTTGAATTTGTTA+AGG | 0.441686 | 7.2:+16301330 | MS.gene52645:CDS |
| TATGGTTGGCTTAAGGGATC+TGG | 0.446200 | 7.2:+16301894 | MS.gene52645:CDS |
| GATGAGGTTTCTTGTAATTG+GGG | 0.448648 | 7.2:+16301433 | MS.gene52645:CDS |
| TGTGGAAAACACGAAAGAAA+TGG | 0.448745 | 7.2:+16301969 | MS.gene52645:CDS |
| CTTGTTGCGCTTAGGTTATG+TGG | 0.449939 | 7.2:+16301951 | MS.gene52645:CDS |
| TTGTGCTTGCTTTCGAATGT+TGG | 0.450865 | 7.2:+16301472 | MS.gene52645:CDS |
| GAGATGGAAGCTAAAGAGAT+TGG | 0.461660 | 7.2:+16301709 | MS.gene52645:CDS |
| CCGCAAGTACTGTGTGAGAC+TGG | 0.465962 | 7.2:-16301741 | None:intergenic |
| GTTGCTTGAATGTAGGTAAG+AGG | 0.469865 | 7.2:+16301800 | MS.gene52645:CDS |
| CGAGAAACAAGAGGGCAATC+TGG | 0.474907 | 7.2:-16301615 | None:intergenic |
| AAGACAACTAAGAGTTTGCT+TGG | 0.477982 | 7.2:+16301778 | MS.gene52645:CDS |
| TATGTAAAACGCCATCCGTC+TGG | 0.479613 | 7.2:+16302339 | MS.gene52645:CDS |
| GACAACCTAAGCTTAACTCT+TGG | 0.480332 | 7.2:-16302222 | None:intergenic |
| AATCTCCAAGAGTTAAGCTT+AGG | 0.484339 | 7.2:+16302217 | MS.gene52645:CDS |
| AAAACACGAAAGAAATGGAT+TGG | 0.486098 | 7.2:+16301974 | MS.gene52645:CDS |
| GTTTAAGGCATTCAGAGGTA+AGG | 0.491148 | 7.2:+16301999 | MS.gene52645:CDS |
| TTGCTTGGTTGCTTGAATGT+AGG | 0.497867 | 7.2:+16301793 | MS.gene52645:CDS |
| ACAGAGTTCTTGTTGCGCTT+AGG | 0.497883 | 7.2:+16301943 | MS.gene52645:CDS |
| TGGAATAAGAGTTAAGCCTA+TGG | 0.513478 | 7.2:+16301876 | MS.gene52645:CDS |
| ACCCAGTTCTTCATTTCAAG+AGG | 0.514113 | 7.2:-16301850 | None:intergenic |
| TTGAAGAATATTGTTGCAAA+GGG | 0.516097 | 7.2:+16301364 | MS.gene52645:CDS |
| GATTTATAGGAAAGATATGA+TGG | 0.516794 | 7.2:-16302198 | None:intergenic |
| GCTTCTGACTGAAATTGAGA+TGG | 0.523682 | 7.2:+16301693 | MS.gene52645:CDS |
| AATGGTGCTCAAAGCAAGCC+CGG | 0.524340 | 7.2:-16302283 | None:intergenic |
| ATTGTTGCAAAGGGTGGTGA+TGG | 0.524388 | 7.2:+16301373 | MS.gene52645:CDS |
| TGGCTTAAGGGATCTGGAAG+AGG | 0.530600 | 7.2:+16301900 | MS.gene52645:CDS |
| AAACACGAAAGAAATGGATT+GGG | 0.533185 | 7.2:+16301975 | MS.gene52645:CDS |
| GAAGAGGAGAAATCGAGGGT+GGG | 0.535364 | 7.2:+16301916 | MS.gene52645:CDS |
| ACACCACCAACCAAAATCCC+TGG | 0.538047 | 7.2:-16301310 | None:intergenic |
| ATAAGAGTTAAGCCTATGGT+TGG | 0.547914 | 7.2:+16301880 | MS.gene52645:CDS |
| TTGATAGTGGCTGGATTCAG+TGG | 0.549853 | 7.2:+16301401 | MS.gene52645:CDS |
| AGATCCCTTAAGCCAACCAT+AGG | 0.552682 | 7.2:-16301892 | None:intergenic |
| AAGAATATTGTTGCAAAGGG+TGG | 0.552691 | 7.2:+16301367 | MS.gene52645:CDS |
| GCGTCTATGTAGCATACTGC+AGG | 0.554692 | 7.2:+16301822 | MS.gene52645:CDS |
| AAGAGGAGAAATCGAGGGTG+GGG | 0.556838 | 7.2:+16301917 | MS.gene52645:CDS |
| ATAACTGGCTCGTAGACCAT+GGG | 0.558316 | 7.2:+16302250 | MS.gene52645:CDS |
| CAGTTGGCTGAGATTATTCG+CGG | 0.559583 | 7.2:+16301508 | MS.gene52645:CDS |
| GTTGAAGAATATTGTTGCAA+AGG | 0.570077 | 7.2:+16301363 | MS.gene52645:CDS |
| TATAACTGGCTCGTAGACCA+TGG | 0.570411 | 7.2:+16302249 | MS.gene52645:CDS |
| AATGCTGTTGCTGTAAGTCC+AGG | 0.570515 | 7.2:+16301292 | MS.gene52645:CDS |
| CCAGTCTCACACAGTACTTG+CGG | 0.570636 | 7.2:+16301741 | MS.gene52645:CDS |
| TTTAAGGCATTCAGAGGTAA+GGG | 0.573981 | 7.2:+16302000 | MS.gene52645:CDS |
| ACCATGGGGCTGTAAATCCC+GGG | 0.578084 | 7.2:+16302265 | MS.gene52645:CDS |
| GGAAGAGGAGAAATCGAGGG+TGG | 0.579631 | 7.2:+16301915 | MS.gene52645:CDS |
| TCCCAAACTTGAAGGCCAGA+CGG | 0.582508 | 7.2:-16302354 | None:intergenic |
| ATCTGGAAGAGGAGAAATCG+AGG | 0.593033 | 7.2:+16301911 | MS.gene52645:CDS |
| TCCTCTTGAAATGAAGAACT+GGG | 0.593818 | 7.2:+16301849 | MS.gene52645:CDS |
| CTGAAGACACACCCTCAAGT+TGG | 0.598790 | 7.2:-16301671 | None:intergenic |
| TGGGCGTTTAAGGCATTCAG+AGG | 0.599454 | 7.2:+16301994 | MS.gene52645:CDS |
| AAACTTGAAGGCCAGACGGA+TGG | 0.607382 | 7.2:-16302350 | None:intergenic |
| TCTTAATCAGAACACAGATA+GGG | 0.611252 | 7.2:+16302113 | MS.gene52645:CDS |
| GCCCGGGATTTACAGCCCCA+TGG | 0.614020 | 7.2:-16302266 | None:intergenic |
| CACCATAGTTACACAGAGTG+TGG | 0.622508 | 7.2:-16301144 | None:intergenic |
| ATGGTGCTCAAAGCAAGCCC+GGG | 0.635036 | 7.2:-16302282 | None:intergenic |
| GTGTTCTGATTAAGAATCTG+AGG | 0.641643 | 7.2:-16302105 | None:intergenic |
| GTGGAAACTCGAGAAACAAG+AGG | 0.644988 | 7.2:-16301624 | None:intergenic |
| TGGTTTCAGTGAGAAACAGT+TGG | 0.649810 | 7.2:+16301492 | MS.gene52645:CDS |
| AACTTGACCATTGAAATCTG+TGG | 0.652306 | 7.2:-16301643 | None:intergenic |
| TGGAAACTCGAGAAACAAGA+GGG | 0.652528 | 7.2:-16301623 | None:intergenic |
| GTGTTCCTCGATCCAAAATG+GGG | 0.658605 | 7.2:+16301164 | MS.gene52645:CDS |
| ATGCTGTTGCTGTAAGTCCA+GGG | 0.682252 | 7.2:+16301293 | MS.gene52645:CDS |
| TCTGGAAGAGGAGAAATCGA+GGG | 0.689277 | 7.2:+16301912 | MS.gene52645:CDS |
| TAACTGGCTCGTAGACCATG+GGG | 0.718245 | 7.2:+16302251 | MS.gene52645:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTAAATTTGAAAAT+GGG | + | chr7.2:16301209-16301228 | MS.gene52645:CDS | 10.0% |
| !!! | AGTTTTTAAATTTGAAAATG+GGG | + | chr7.2:16301210-16301229 | MS.gene52645:CDS | 15.0% |
| !!! | CAAGTTTTTAAATTTGAAAA+TGG | + | chr7.2:16301208-16301227 | MS.gene52645:CDS | 15.0% |
| !!! | TTTTCAAATTTAAAAACTTG+CGG | - | chr7.2:16301208-16301227 | None:intergenic | 15.0% |
| !! | GATTCTTCAAAAATAATACA+AGG | - | chr7.2:16301538-16301557 | None:intergenic | 20.0% |
| !!! | TGTATTATTTTTGAAGAATC+AGG | + | chr7.2:16301538-16301557 | MS.gene52645:CDS | 20.0% |
| !!! | TGTTAATGTTGAATTTGTTA+AGG | + | chr7.2:16301330-16301349 | MS.gene52645:CDS | 20.0% |
| !!! | TTTGATTTTATTGTTAATGC+TGG | + | chr7.2:16302042-16302061 | MS.gene52645:CDS | 20.0% |
| ! | ATTAAGGCTTATGAAGATTT+GGG | + | chr7.2:16301247-16301266 | MS.gene52645:CDS | 25.0% |
| ! | ATTGAGTATCTTGTAAAGAA+AGG | + | chr7.2:16302147-16302166 | MS.gene52645:CDS | 25.0% |
| ! | GATTTATAGGAAAGATATGA+TGG | - | chr7.2:16302201-16302220 | None:intergenic | 25.0% |
| ! | TTGAAGAATATTGTTGCAAA+GGG | + | chr7.2:16301364-16301383 | MS.gene52645:CDS | 25.0% |
| !! | TAAATTTGAAAATGGGGTTT+TGG | + | chr7.2:16301216-16301235 | MS.gene52645:CDS | 25.0% |
| !! | TTTGAAAATTTTCCCCATTT+TGG | - | chr7.2:16301179-16301198 | None:intergenic | 25.0% |
| !!! | ATTATTTTTGAAGAATCAGG+AGG | + | chr7.2:16301541-16301560 | MS.gene52645:CDS | 25.0% |
| !!! | ATTGGTTTTTTGGTCAAATT+TGG | + | chr7.2:16301580-16301599 | MS.gene52645:CDS | 25.0% |
| AAAACACGAAAGAAATGGAT+TGG | + | chr7.2:16301974-16301993 | MS.gene52645:CDS | 30.0% | |
| CTTAACTCTTGGAGATTTAT+AGG | - | chr7.2:16302214-16302233 | None:intergenic | 30.0% | |
| GATTAAGGCTTATGAAGATT+TGG | + | chr7.2:16301246-16301265 | MS.gene52645:CDS | 30.0% | |
| GTTGAAGAATATTGTTGCAA+AGG | + | chr7.2:16301363-16301382 | MS.gene52645:CDS | 30.0% | |
| TCTTAATCAGAACACAGATA+GGG | + | chr7.2:16302113-16302132 | MS.gene52645:CDS | 30.0% | |
| TTCTTAATCAGAACACAGAT+AGG | + | chr7.2:16302112-16302131 | MS.gene52645:CDS | 30.0% | |
| ! | AAACACGAAAGAAATGGATT+GGG | + | chr7.2:16301975-16301994 | MS.gene52645:CDS | 30.0% |
| ! | TTAGGTTGTCAATGTATAAC+TGG | + | chr7.2:16302235-16302254 | MS.gene52645:CDS | 30.0% |
| AACTTGACCATTGAAATCTG+TGG | - | chr7.2:16301646-16301665 | None:intergenic | 35.0% | |
| AAGAATATTGTTGCAAAGGG+TGG | + | chr7.2:16301367-16301386 | MS.gene52645:CDS | 35.0% | |
| AATCTCCAAGAGTTAAGCTT+AGG | + | chr7.2:16302217-16302236 | MS.gene52645:CDS | 35.0% | |
| ATAAGAGTTAAGCCTATGGT+TGG | + | chr7.2:16301880-16301899 | MS.gene52645:CDS | 35.0% | |
| ATCCTCTTGAAATGAAGAAC+TGG | + | chr7.2:16301848-16301867 | MS.gene52645:CDS | 35.0% | |
| ATTATCTGTGCATGCGATAA+TGG | - | chr7.2:16302304-16302323 | None:intergenic | 35.0% | |
| GATGAGGTTTCTTGTAATTG+GGG | + | chr7.2:16301433-16301452 | MS.gene52645:CDS | 35.0% | |
| GGATGAGGTTTCTTGTAATT+GGG | + | chr7.2:16301432-16301451 | MS.gene52645:CDS | 35.0% | |
| GTGTTCTGATTAAGAATCTG+AGG | - | chr7.2:16302108-16302127 | None:intergenic | 35.0% | |
| TCCTCTTGAAATGAAGAACT+GGG | + | chr7.2:16301849-16301868 | MS.gene52645:CDS | 35.0% | |
| TGGAATAAGAGTTAAGCCTA+TGG | + | chr7.2:16301876-16301895 | MS.gene52645:CDS | 35.0% | |
| TGGATGAGGTTTCTTGTAAT+TGG | + | chr7.2:16301431-16301450 | MS.gene52645:CDS | 35.0% | |
| TGTGGAAAACACGAAAGAAA+TGG | + | chr7.2:16301969-16301988 | MS.gene52645:CDS | 35.0% | |
| ! | AAGACAACTAAGAGTTTGCT+TGG | + | chr7.2:16301778-16301797 | MS.gene52645:CDS | 35.0% |
| ! | TTTAAGGCATTCAGAGGTAA+GGG | + | chr7.2:16302000-16302019 | MS.gene52645:CDS | 35.0% |
| !!! | ACTGTCGATGATTGGTTTTT+TGG | + | chr7.2:16301570-16301589 | MS.gene52645:CDS | 35.0% |
| !!! | GGTTTTGGTTTCGAAGATTA+AGG | + | chr7.2:16301231-16301250 | MS.gene52645:CDS | 35.0% |
| ACCCAGTTCTTCATTTCAAG+AGG | - | chr7.2:16301853-16301872 | None:intergenic | 40.0% | |
| CGAGTTTCCACAGATTTCAA+TGG | + | chr7.2:16301636-16301655 | MS.gene52645:CDS | 40.0% | |
| GAAATGAAGAACTGGGTTCT+TGG | + | chr7.2:16301856-16301875 | MS.gene52645:CDS | 40.0% | |
| GACAACCTAAGCTTAACTCT+TGG | - | chr7.2:16302225-16302244 | None:intergenic | 40.0% | |
| GAGATGGAAGCTAAAGAGAT+TGG | + | chr7.2:16301709-16301728 | MS.gene52645:CDS | 40.0% | |
| GCTTCTGACTGAAATTGAGA+TGG | + | chr7.2:16301693-16301712 | MS.gene52645:CDS | 40.0% | |
| GTTGCTTGAATGTAGGTAAG+AGG | + | chr7.2:16301800-16301819 | MS.gene52645:CDS | 40.0% | |
| TACCACACTCTGTGTAACTA+TGG | + | chr7.2:16301142-16301161 | MS.gene52645:CDS | 40.0% | |
| TGGAAACTCGAGAAACAAGA+GGG | - | chr7.2:16301626-16301645 | None:intergenic | 40.0% | |
| TGGTTTCAGTGAGAAACAGT+TGG | + | chr7.2:16301492-16301511 | MS.gene52645:CDS | 40.0% | |
| TTGCTTGGTTGCTTGAATGT+AGG | + | chr7.2:16301793-16301812 | MS.gene52645:CDS | 40.0% | |
| TTGTGCTTGCTTTCGAATGT+TGG | + | chr7.2:16301472-16301491 | MS.gene52645:CDS | 40.0% | |
| ! | ATTTTCCCCATTTTGGATCG+AGG | - | chr7.2:16301172-16301191 | None:intergenic | 40.0% |
| ! | CAAGTTTTTCGCCAACTTGA+GGG | + | chr7.2:16301660-16301679 | MS.gene52645:CDS | 40.0% |
| ! | GTTTAAGGCATTCAGAGGTA+AGG | + | chr7.2:16301999-16302018 | MS.gene52645:CDS | 40.0% |
| ! | TCAAGTTTTTCGCCAACTTG+AGG | + | chr7.2:16301659-16301678 | MS.gene52645:CDS | 40.0% |
| !! | AGAAATGGATTGGGCGTTTA+AGG | + | chr7.2:16301984-16302003 | MS.gene52645:CDS | 40.0% |
| !! | GGTGATGGTGATTTTGATAG+TGG | + | chr7.2:16301388-16301407 | MS.gene52645:CDS | 40.0% |
| !! | TAAGCCTATGGTTGGCTTAA+GGG | + | chr7.2:16301888-16301907 | MS.gene52645:CDS | 40.0% |
| !! | TTAAGCCTATGGTTGGCTTA+AGG | + | chr7.2:16301887-16301906 | MS.gene52645:CDS | 40.0% |
| !!! | ATGGTGATTTTGATAGTGGC+TGG | + | chr7.2:16301392-16301411 | MS.gene52645:CDS | 40.0% |
| !!! | CTGGATTCAGTGGCATTTTT+TGG | + | chr7.2:16301411-16301430 | MS.gene52645:CDS | 40.0% |
| !!! | TCAGTGGCATTTTTTGGATG+AGG | + | chr7.2:16301417-16301436 | MS.gene52645:CDS | 40.0% |
| AATGCTGTTGCTGTAAGTCC+AGG | + | chr7.2:16301292-16301311 | MS.gene52645:CDS | 45.0% | |
| ACAGAGTTCTTGTTGCGCTT+AGG | + | chr7.2:16301943-16301962 | MS.gene52645:CDS | 45.0% | |
| AGATCCCTTAAGCCAACCAT+AGG | - | chr7.2:16301895-16301914 | None:intergenic | 45.0% | |
| ATCTGGAAGAGGAGAAATCG+AGG | + | chr7.2:16301911-16301930 | MS.gene52645:CDS | 45.0% | |
| ATGCTGTTGCTGTAAGTCCA+GGG | + | chr7.2:16301293-16301312 | MS.gene52645:CDS | 45.0% | |
| ATTGTTGCAAAGGGTGGTGA+TGG | + | chr7.2:16301373-16301392 | MS.gene52645:CDS | 45.0% | |
| CACCATAGTTACACAGAGTG+TGG | - | chr7.2:16301147-16301166 | None:intergenic | 45.0% | |
| CAGTTGGCTGAGATTATTCG+CGG | + | chr7.2:16301508-16301527 | MS.gene52645:CDS | 45.0% | |
| CTTGTTGCGCTTAGGTTATG+TGG | + | chr7.2:16301951-16301970 | MS.gene52645:CDS | 45.0% | |
| GCAACTCTTCCCAAACTTGA+AGG | - | chr7.2:16302365-16302384 | None:intergenic | 45.0% | |
| GGTGTTCCTCGATCCAAAAT+GGG | + | chr7.2:16301163-16301182 | MS.gene52645:CDS | 45.0% | |
| GTGGAAACTCGAGAAACAAG+AGG | - | chr7.2:16301627-16301646 | None:intergenic | 45.0% | |
| GTGTTCCTCGATCCAAAATG+GGG | + | chr7.2:16301164-16301183 | MS.gene52645:CDS | 45.0% | |
| TATGTAAAACGCCATCCGTC+TGG | + | chr7.2:16302339-16302358 | MS.gene52645:CDS | 45.0% | |
| TCTGGAAGAGGAGAAATCGA+GGG | + | chr7.2:16301912-16301931 | MS.gene52645:CDS | 45.0% | |
| TGGTGTTCCTCGATCCAAAA+TGG | + | chr7.2:16301162-16301181 | MS.gene52645:CDS | 45.0% | |
| ! | TGCTGTAAGTCCAGGGATTT+TGG | + | chr7.2:16301300-16301319 | MS.gene52645:CDS | 45.0% |
| !! | ATAACTGGCTCGTAGACCAT+GGG | + | chr7.2:16302250-16302269 | MS.gene52645:CDS | 45.0% |
| !! | GTAAGTCCAGGGATTTTGGT+TGG | + | chr7.2:16301304-16301323 | MS.gene52645:CDS | 45.0% |
| !! | TATAACTGGCTCGTAGACCA+TGG | + | chr7.2:16302249-16302268 | MS.gene52645:CDS | 45.0% |
| !! | TATGGTTGGCTTAAGGGATC+TGG | + | chr7.2:16301894-16301913 | MS.gene52645:CDS | 45.0% |
| !! | TTGATAGTGGCTGGATTCAG+TGG | + | chr7.2:16301401-16301420 | MS.gene52645:CDS | 45.0% |
| AAACTTGAAGGCCAGACGGA+TGG | - | chr7.2:16302353-16302372 | None:intergenic | 50.0% | |
| AAGAGGAGAAATCGAGGGTG+GGG | + | chr7.2:16301917-16301936 | MS.gene52645:CDS | 50.0% | |
| AATGGTGCTCAAAGCAAGCC+CGG | - | chr7.2:16302286-16302305 | None:intergenic | 50.0% | |
| ACACCACCAACCAAAATCCC+TGG | - | chr7.2:16301313-16301332 | None:intergenic | 50.0% | |
| CAGTCTCACACAGTACTTGC+GGG | + | chr7.2:16301742-16301761 | MS.gene52645:CDS | 50.0% | |
| CCAGTCTCACACAGTACTTG+CGG | + | chr7.2:16301741-16301760 | MS.gene52645:CDS | 50.0% | |
| CGAGAAACAAGAGGGCAATC+TGG | - | chr7.2:16301618-16301637 | None:intergenic | 50.0% | |
| CTGAAGACACACCCTCAAGT+TGG | - | chr7.2:16301674-16301693 | None:intergenic | 50.0% | |
| GAAGAGGAGAAATCGAGGGT+GGG | + | chr7.2:16301916-16301935 | MS.gene52645:CDS | 50.0% | |
| GCGTCTATGTAGCATACTGC+AGG | + | chr7.2:16301822-16301841 | MS.gene52645:CDS | 50.0% | |
| GGCAAGACACTGTCGATGAT+TGG | + | chr7.2:16301562-16301581 | MS.gene52645:CDS | 50.0% | |
| TCCCAAACTTGAAGGCCAGA+CGG | - | chr7.2:16302357-16302376 | None:intergenic | 50.0% | |
| TGGCTTAAGGGATCTGGAAG+AGG | + | chr7.2:16301900-16301919 | MS.gene52645:CDS | 50.0% | |
| ! | ATCCGTCTGGCCTTCAAGTT+TGG | + | chr7.2:16302352-16302371 | MS.gene52645:CDS | 50.0% |
| ! | TCCGTCTGGCCTTCAAGTTT+GGG | + | chr7.2:16302353-16302372 | MS.gene52645:CDS | 50.0% |
| ! | TGGGCGTTTAAGGCATTCAG+AGG | + | chr7.2:16301994-16302013 | MS.gene52645:CDS | 50.0% |
| !! | TAACTGGCTCGTAGACCATG+GGG | + | chr7.2:16302251-16302270 | MS.gene52645:CDS | 50.0% |
| !!! | AGTCCAGGGATTTTGGTTGG+TGG | + | chr7.2:16301307-16301326 | MS.gene52645:CDS | 50.0% |
| ACCATGGGGCTGTAAATCCC+GGG | + | chr7.2:16302265-16302284 | MS.gene52645:CDS | 55.0% | |
| AGGTAAGGGAGCTGAGCTTC+AGG | + | chr7.2:16302014-16302033 | MS.gene52645:CDS | 55.0% | |
| ATGGTGCTCAAAGCAAGCCC+GGG | - | chr7.2:16302285-16302304 | None:intergenic | 55.0% | |
| GACCATGGGGCTGTAAATCC+CGG | + | chr7.2:16302264-16302283 | MS.gene52645:CDS | 55.0% | |
| GGAAGAGGAGAAATCGAGGG+TGG | + | chr7.2:16301915-16301934 | MS.gene52645:CDS | 55.0% | |
| ! | CCGCAAGTACTGTGTGAGAC+TGG | - | chr7.2:16301744-16301763 | None:intergenic | 55.0% |
| GCCCGGGATTTACAGCCCCA+TGG | - | chr7.2:16302269-16302288 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 16301133 | 16302413 | 16301133 | ID=MS.gene52645 |
| chr7.2 | mRNA | 16301133 | 16302413 | 16301133 | ID=MS.gene52645.t1;Parent=MS.gene52645 |
| chr7.2 | exon | 16301133 | 16302413 | 16301133 | ID=MS.gene52645.t1.exon1;Parent=MS.gene52645.t1 |
| chr7.2 | CDS | 16301133 | 16302413 | 16301133 | ID=cds.MS.gene52645.t1;Parent=MS.gene52645.t1 |
| Gene Sequence |
| Protein sequence |
