AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52646

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52646.t1 MTR_7g093010 91.503 306 15 3 1 304 1 297 0.0 559
MS.gene52646.t1 MTR_1g053800 38.710 279 134 8 35 304 9 259 1.62e-39 141
MS.gene52646.t1 MTR_1g053835 42.105 114 59 1 191 297 220 333 2.67e-17 82.0
MS.gene52646.t1 MTR_7g093030 50.000 82 41 0 222 303 212 293 3.45e-17 80.5
MS.gene52646.t1 MTR_7g093030 50.000 82 41 0 222 303 212 293 1.58e-16 79.7
MS.gene52646.t1 MTR_7g098250 43.617 94 42 2 190 277 229 317 7.52e-15 75.1
MS.gene52646.t1 MTR_1g080330 52.308 65 31 0 212 276 165 229 1.42e-14 72.8
MS.gene52646.t1 MTR_1g080330 52.308 65 31 0 212 276 165 229 2.13e-14 73.2
MS.gene52646.t1 MTR_7g088070 48.571 70 32 1 222 291 50 115 8.92e-14 70.5
MS.gene52646.t1 MTR_7g088070 48.529 68 31 1 222 289 50 113 2.61e-13 69.3
MS.gene52646.t1 MTR_7g115530 49.275 69 31 1 222 290 218 282 4.26e-13 68.9
MS.gene52646.t1 MTR_8g086410 51.667 60 29 0 224 283 113 172 4.34e-13 69.7
MS.gene52646.t1 MTR_8g086410 60.377 53 21 0 224 276 113 165 5.80e-13 69.3
MS.gene52646.t1 MTR_8g086410 60.377 53 21 0 224 276 111 163 5.99e-13 69.3
MS.gene52646.t1 MTR_2g027860 47.368 76 35 2 222 296 49 120 6.28e-13 68.6
MS.gene52646.t1 MTR_7g115530 49.275 69 31 1 222 290 218 282 7.92e-13 68.2
MS.gene52646.t1 MTR_5g027440 44.737 76 42 0 222 297 25 100 9.36e-13 67.8
MS.gene52646.t1 MTR_7g115530 53.571 56 26 0 222 277 218 273 1.28e-12 67.8
MS.gene52646.t1 MTR_2g027800 57.407 54 23 0 222 275 39 92 1.41e-12 67.4
MS.gene52646.t1 MTR_7g115530 49.275 69 31 1 222 290 218 282 1.46e-12 68.2
MS.gene52646.t1 MTR_2g027800 57.407 54 23 0 222 275 39 92 1.54e-12 67.4
MS.gene52646.t1 MTR_1g053830 42.391 92 47 3 206 296 1 87 1.99e-12 62.8
MS.gene52646.t1 MTR_7g115530 55.769 52 23 0 222 273 218 269 3.18e-12 65.9
MS.gene52646.t1 MTR_2g084230 56.604 53 23 0 224 276 99 151 1.02e-11 65.1
MS.gene52646.t1 MTR_2g023580 43.590 78 40 1 199 276 36 109 1.04e-11 63.9
MS.gene52646.t1 MTR_3g450310 53.704 54 25 0 224 277 21 74 1.06e-11 63.5
MS.gene52646.t1 MTR_1g090670 55.556 54 24 0 222 275 44 97 1.17e-11 64.7
MS.gene52646.t1 MTR_6g444980 50.820 61 30 0 222 282 35 95 1.17e-11 65.1
MS.gene52646.t1 MTR_6g444980 50.820 61 30 0 222 282 35 95 1.36e-11 64.7
MS.gene52646.t1 MTR_2g084230 56.604 53 23 0 224 276 99 151 1.42e-11 64.7
MS.gene52646.t1 MTR_7g115530 54.902 51 23 0 222 272 218 268 1.81e-11 63.9
MS.gene52646.t1 MTR_0223s0040 45.714 70 37 1 224 293 20 88 2.96e-11 63.2
MS.gene52646.t1 MTR_7g069660 56.604 53 23 0 224 276 73 125 3.09e-11 63.9
MS.gene52646.t1 MTR_2g016220 54.717 53 24 0 224 276 91 143 3.84e-11 63.5
MS.gene52646.t1 MTR_2g016220 54.717 53 24 0 224 276 91 143 3.88e-11 63.5
MS.gene52646.t1 MTR_6g032990 47.541 61 32 0 221 281 41 101 9.45e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52646.t1 AT5G06800 61.667 60 21 1 218 275 186 245 8.97e-16 76.3
MS.gene52646.t1 AT5G06800 54.930 71 30 1 218 286 186 256 2.20e-15 76.3
MS.gene52646.t1 AT5G06800 61.667 60 21 1 218 275 186 245 2.62e-15 75.9
MS.gene52646.t1 AT2G01060 42.529 87 46 1 210 296 3 85 6.80e-15 73.9
MS.gene52646.t1 AT5G29000 48.529 68 35 0 210 277 219 286 2.97e-14 72.4
MS.gene52646.t1 AT5G29000 48.529 68 35 0 210 277 219 286 4.52e-14 72.4
MS.gene52646.t1 AT5G29000 48.529 68 35 0 210 277 176 243 4.78e-14 72.4
MS.gene52646.t1 AT5G29000 48.529 68 35 0 210 277 176 243 4.78e-14 72.4
MS.gene52646.t1 AT3G04450 49.296 71 35 1 220 290 236 305 8.75e-14 71.6
MS.gene52646.t1 AT3G04450 51.724 58 28 0 220 277 236 293 9.86e-14 70.9
MS.gene52646.t1 AT3G04450 49.296 71 35 1 220 290 196 265 9.98e-14 71.6
MS.gene52646.t1 AT3G04450 49.296 71 35 1 220 290 196 265 9.98e-14 71.6
MS.gene52646.t1 AT4G28610 49.333 75 35 1 202 276 208 279 1.15e-13 71.2
MS.gene52646.t1 AT2G42660 60.377 53 21 0 224 276 52 104 1.43e-13 69.7
MS.gene52646.t1 AT3G13040 41.284 109 59 2 196 304 215 318 1.51e-13 71.2
MS.gene52646.t1 AT3G13040 41.284 109 59 2 196 304 215 318 1.51e-13 71.2
MS.gene52646.t1 AT3G13040 41.284 109 59 2 196 304 215 318 1.51e-13 71.2
MS.gene52646.t1 AT3G12730 54.098 61 28 0 222 282 23 83 2.47e-13 68.6
MS.gene52646.t1 AT2G06020 31.387 137 80 3 147 275 9 139 8.84e-13 68.2
MS.gene52646.t1 AT4G04605 47.619 63 32 1 224 286 16 77 2.05e-12 65.9
MS.gene52646.t1 AT2G40260 54.717 53 24 0 224 276 84 136 9.84e-12 65.5
MS.gene52646.t1 AT1G79430 50.820 61 30 0 222 282 34 94 1.07e-11 65.1
MS.gene52646.t1 AT3G24120 53.704 54 25 0 222 275 41 94 1.11e-11 64.7
MS.gene52646.t1 AT3G24120 53.704 54 25 0 222 275 41 94 1.25e-11 64.7
MS.gene52646.t1 AT4G13640 53.704 54 25 0 222 275 37 90 1.40e-11 64.3
MS.gene52646.t1 AT4G13640 53.704 54 25 0 222 275 37 90 1.61e-11 64.3
MS.gene52646.t1 AT1G14600 45.455 77 38 1 205 277 2 78 2.99e-11 63.2
MS.gene52646.t1 AT2G38300 56.604 53 23 0 224 276 56 108 3.44e-11 63.5
MS.gene52646.t1 AT5G45580 51.852 54 26 0 222 275 23 76 3.93e-11 62.8
MS.gene52646.t1 AT5G45580 51.852 54 26 0 222 275 7 60 3.98e-11 62.8
MS.gene52646.t1 AT5G42630 40.506 79 45 1 201 277 82 160 4.04e-11 62.0
MS.gene52646.t1 AT2G20400 53.571 56 26 0 222 277 231 286 6.51e-11 63.2
MS.gene52646.t1 AT2G20400 43.750 80 40 1 222 301 231 305 6.61e-11 63.2
MS.gene52646.t1 AT4G04555 54.902 51 23 0 226 276 18 68 6.79e-11 58.9
MS.gene52646.t1 AT2G02060 50.877 57 28 0 224 280 31 87 6.84e-11 62.0
MS.gene52646.t1 AT2G02060 50.877 57 28 0 224 280 31 87 6.84e-11 62.0
MS.gene52646.t1 AT5G42630 40.506 79 45 1 201 277 82 160 9.77e-11 61.6

Find 53 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCAGACTCCTCAACTTTA+TGG 0.179376 7.2:+16291397 MS.gene52646:CDS
CTTCTAACAACTCTGCTTCT+AGG 0.281074 7.2:+16291431 MS.gene52646:CDS
CAAACATCTCATGATGGTTT+TGG 0.318369 7.2:+16290198 MS.gene52646:CDS
ATTGGAGGGTCTGTTATCTT+TGG 0.328987 7.2:-16290324 None:intergenic
TCATGTTAAAAGCCATTTGC+AGG 0.345777 7.2:+16291680 MS.gene52646:CDS
ACGCATGCATAAAGCTTTGC+AGG 0.361361 7.2:+16291827 MS.gene52646:CDS
TTCAAGGGGCTTCTCATCAA+TGG 0.375794 7.2:-16290553 None:intergenic
TTCTCTGAAAAGAAATTTCA+AGG 0.402613 7.2:-16290569 None:intergenic
TAGGTTGTTAATTCCTATGT+AGG 0.408171 7.2:-16290073 None:intergenic
TGTAGTGACAATGTTGTTGC+AGG 0.413465 7.2:-16290163 None:intergenic
TGTGTTCTGATCCAACAATT+TGG 0.429748 7.2:-16290116 None:intergenic
AGGAATTAACAACCTAGTTA+AGG 0.443869 7.2:+16290080 MS.gene52646:CDS
CAACATTGGTCAAAGATGTA+TGG 0.453490 7.2:+16290036 MS.gene52646:CDS
AACAACCTAGTTAAGGTCGT+TGG 0.455669 7.2:+16290087 MS.gene52646:CDS
CATACATCTTTGACCAATGT+TGG 0.474221 7.2:-16290035 None:intergenic
CAAAGATGTATGGAACTCAA+TGG 0.475646 7.2:+16290046 MS.gene52646:CDS
ACAACCTAGTTAAGGTCGTT+GGG 0.490838 7.2:+16290088 MS.gene52646:CDS
GAGGATGAGATTGAAGTTCC+TGG 0.496762 7.2:+16290282 MS.gene52646:CDS
AAAGATGTATGGAACTCAAT+GGG 0.496984 7.2:+16290047 MS.gene52646:CDS
TCTGTTCTATGTCCTTCCTC+AGG 0.498706 7.2:-16291946 None:intergenic
CTGACCCAACGACCTTAACT+AGG 0.499027 7.2:-16290092 None:intergenic
ATGCTGAATTGTCAAGCCTA+TGG 0.501729 7.2:+16290345 MS.gene52646:CDS
CTTTGACCAATGTTGGTACA+TGG 0.506794 7.2:-16290028 None:intergenic
TTGTTGCAGGGTGACTTGAT+TGG 0.508916 7.2:-16290150 None:intergenic
GTTGGGTCAGACCAAATTGT+TGG 0.508983 7.2:+16290105 MS.gene52646:CDS
CAAGGTCAAACATCTCATGA+TGG 0.511209 7.2:+16290192 MS.gene52646:CDS
TGTAAAATTATCTCCTCCAT+AGG 0.514916 7.2:-16290361 None:intergenic
GCTTGACAATTCAGCATTGG+AGG 0.527222 7.2:-16290339 None:intergenic
CTCTGAAAAGAAATTTCAAG+GGG 0.530710 7.2:-16290567 None:intergenic
CATGTAAAAGAAGAGTAAGA+TGG 0.531937 7.2:+16291464 MS.gene52646:CDS
TCTCTGAAAAGAAATTTCAA+GGG 0.533832 7.2:-16290568 None:intergenic
AGAAGCAGAGTTGTTAGAAG+TGG 0.539987 7.2:-16291428 None:intergenic
TAGGCTTGACAATTCAGCAT+TGG 0.547239 7.2:-16290342 None:intergenic
AGATTCATCAACAGAGTACA+AGG 0.551613 7.2:-16290403 None:intergenic
AATTGCAGAGGCAAAGCCTA+AGG 0.561046 7.2:+16291617 MS.gene52646:intron
ATGATAATCGTTGATCACCT+TGG 0.567335 7.2:+16291511 MS.gene52646:CDS
ATCATATCTAGTATAGCCTT+AGG 0.576046 7.2:-16291633 None:intergenic
ACTCAATGGGAATCCTACAT+AGG 0.576742 7.2:+16290060 MS.gene52646:CDS
CTTGACAATTCAGCATTGGA+GGG 0.587253 7.2:-16290338 None:intergenic
ATAATCGTTGATCACCTTGG+TGG 0.592004 7.2:+16291514 MS.gene52646:CDS
AACCAACCATGTACCAACAT+TGG 0.603963 7.2:+16290022 None:intergenic
CTGAATTGTCAAGCCTATGG+AGG 0.616055 7.2:+16290348 MS.gene52646:CDS
CGCATGCATAAAGCTTTGCA+GGG 0.616606 7.2:+16291828 MS.gene52646:CDS
AAGAAGAGTAAGATGGACAG+AGG 0.623246 7.2:+16291471 MS.gene52646:CDS
GCACACATTCCATAAAGTTG+AGG 0.636332 7.2:-16291406 None:intergenic
CTTTCAGAAAGACCTGAGGA+AGG 0.638784 7.2:+16291934 MS.gene52646:intron
ATGAGATTGAAGTTCCTGGT+TGG 0.646002 7.2:+16290286 MS.gene52646:CDS
AGGTGAAGAATATTATGATG+AGG 0.647413 7.2:+16290263 MS.gene52646:CDS
GTAGTGACAATGTTGTTGCA+GGG 0.658470 7.2:-16290162 None:intergenic
CAAGGAGTTTGTGAACTGAG+AGG 0.666646 7.2:-16290385 None:intergenic
AACTGATCAAAACACCAACC+AGG 0.670764 7.2:-16290300 None:intergenic
TTATCTTTCAGAAAGACCTG+AGG 0.675030 7.2:+16291930 MS.gene52646:intron
ACTTACTTTCTGGACCACCA+AGG 0.699661 7.2:-16291528 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATGAAATGAAATTTA+GGG + chr7.2:16290943-16290962 MS.gene52646:intron 10.0%
!! TTTAATTATATTAGAGATTA+GGG + chr7.2:16290687-16290706 MS.gene52646:intron 10.0%
!! AAATTATTGAAATTGTTGAA+TGG - chr7.2:16291717-16291736 None:intergenic 15.0%
!! AGGAAAATAAACAAATAAAA+AGG - chr7.2:16291320-16291339 None:intergenic 15.0%
!! ATCTAATACTATAATTAAAC+AGG - chr7.2:16290753-16290772 None:intergenic 15.0%
!! CTAATTATGAAATGAAATTT+AGG + chr7.2:16290942-16290961 MS.gene52646:intron 15.0%
!! GTTTAATTATATTAGAGATT+AGG + chr7.2:16290686-16290705 MS.gene52646:intron 15.0%
!! TCTAATAAAATTGATTAAAG+TGG + chr7.2:16291024-16291043 MS.gene52646:intron 15.0%
!! TTACTAGTAATCTATTTATT+CGG + chr7.2:16291230-16291249 MS.gene52646:intron 15.0%
!!! CATGGATTTTTTTTTTTTAA+TGG + chr7.2:16290800-16290819 MS.gene52646:intron 15.0%
!! AAAAACATGATGAATTGTTT+AGG + chr7.2:16290520-16290539 MS.gene52646:CDS 20.0%
!! AAATCCATGAAATACTTAAA+AGG - chr7.2:16290789-16290808 None:intergenic 20.0%
!! AATTAGATTCATTGCATATA+TGG - chr7.2:16290928-16290947 None:intergenic 20.0%
!! CATTTCATATATAATTCAGA+TGG - chr7.2:16290642-16290661 None:intergenic 20.0%
!! GAAACTAAAAAGAAAATCAA+TGG + chr7.2:16291080-16291099 MS.gene52646:intron 20.0%
!! TACTAGTAATCTATTTATTC+GGG + chr7.2:16291231-16291250 MS.gene52646:intron 20.0%
!! TTAGTTAATTACTTACTTTC+TGG - chr7.2:16291541-16291560 None:intergenic 20.0%
!!! AAAAGTAATGTTAGTTTTCA+AGG + chr7.2:16290243-16290262 MS.gene52646:CDS 20.0%
!!! AAACAATTCATCATGTTTTT+TGG - chr7.2:16290520-16290539 None:intergenic 20.0%
!!! AACAATTCATCATGTTTTTT+GGG - chr7.2:16290519-16290538 None:intergenic 20.0%
!!! AAGAATACTGTAACTTTTTT+TGG - chr7.2:16290717-16290736 None:intergenic 20.0%
!!! ACTAACATTACTTTTGATTT+TGG - chr7.2:16290238-16290257 None:intergenic 20.0%
!!! AGTTGGGAATTTTTTTTTAA+AGG + chr7.2:16291124-16291143 MS.gene52646:intron 20.0%
!!! TCACATAAACATTCTTTTAA+CGG + chr7.2:16291047-16291066 MS.gene52646:intron 20.0%
! AAGTTATGAGACTTATAGTT+GGG + chr7.2:16291108-16291127 MS.gene52646:intron 25.0%
! ACAATGTTAGAGTAAATTAC+CGG - chr7.2:16291769-16291788 None:intergenic 25.0%
! ATTAGAAAAACACGTTAGAT+TGG - chr7.2:16291010-16291029 None:intergenic 25.0%
! TGGATTATAGCTTATTAGAA+AGG - chr7.2:16291340-16291359 None:intergenic 25.0%
! TTCACTTATTATAATTGCAG+AGG + chr7.2:16291605-16291624 MS.gene52646:intron 25.0%
!! AATTTCTTTTCAGAGAACTA+AGG + chr7.2:16290575-16290594 MS.gene52646:CDS 25.0%
!! ATTGTCACTACAAATTTTCA+AGG + chr7.2:16290174-16290193 MS.gene52646:CDS 25.0%
!! GAATATAGTAATTTTCAGTC+TGG + chr7.2:16290468-16290487 MS.gene52646:CDS 25.0%
!! TCTCTGAAAAGAAATTTCAA+GGG - chr7.2:16290571-16290590 None:intergenic 25.0%
!! TTCTCTGAAAAGAAATTTCA+AGG - chr7.2:16290572-16290591 None:intergenic 25.0%
!!! AAATTTAGGGTTTTGTGAAA+GGG + chr7.2:16290956-16290975 MS.gene52646:intron 25.0%
!!! TAGTCCTTTTAAGTATTTCA+TGG + chr7.2:16290782-16290801 MS.gene52646:intron 25.0%
AAAGATGTATGGAACTCAAT+GGG + chr7.2:16290047-16290066 MS.gene52646:CDS 30.0%
AAAGGGACAATAATGAATTG+CGG + chr7.2:16290973-16290992 MS.gene52646:intron 30.0%
ACAACACTGCTTACTTATTA+AGG + chr7.2:16291879-16291898 MS.gene52646:intron 30.0%
AGGAATTAACAACCTAGTTA+AGG + chr7.2:16290080-16290099 MS.gene52646:CDS 30.0%
AGGTGAAGAATATTATGATG+AGG + chr7.2:16290263-16290282 MS.gene52646:CDS 30.0%
ATCATATCTAGTATAGCCTT+AGG - chr7.2:16291636-16291655 None:intergenic 30.0%
CAACTATAAGTCTCATAACT+TGG - chr7.2:16291109-16291128 None:intergenic 30.0%
CAAGTTATGAGACTTATAGT+TGG + chr7.2:16291107-16291126 MS.gene52646:intron 30.0%
CATGTAAAAGAAGAGTAAGA+TGG + chr7.2:16291464-16291483 MS.gene52646:CDS 30.0%
TAGGTTGTTAATTCCTATGT+AGG - chr7.2:16290076-16290095 None:intergenic 30.0%
TGGTTTCATCTATTTGTGAA+TGG + chr7.2:16290820-16290839 MS.gene52646:intron 30.0%
TGTAAAATTATCTCCTCCAT+AGG - chr7.2:16290364-16290383 None:intergenic 30.0%
! AAACATTCTTTTAACGGAGT+TGG + chr7.2:16291053-16291072 MS.gene52646:intron 30.0%
! ATGGCTTTTAACATGAGAAA+TGG - chr7.2:16291676-16291695 None:intergenic 30.0%
! CTCTGAAAAGAAATTTCAAG+GGG - chr7.2:16290570-16290589 None:intergenic 30.0%
! CTTACTCTTCTTTTACATGT+TGG - chr7.2:16291463-16291482 None:intergenic 30.0%
!! GAAATAGTTTTACCTGCAAA+TGG - chr7.2:16291695-16291714 None:intergenic 30.0%
!! GAAATTTAGGGTTTTGTGAA+AGG + chr7.2:16290955-16290974 MS.gene52646:intron 30.0%
AGATTCATCAACAGAGTACA+AGG - chr7.2:16290406-16290425 None:intergenic 35.0%
ATCCATGACTTACTATAGTC+AGG + chr7.2:16291355-16291374 MS.gene52646:intron 35.0%
ATGATAATCGTTGATCACCT+TGG + chr7.2:16291511-16291530 MS.gene52646:CDS 35.0%
ATTTCTCCAACTCGTCAATT+AGG + chr7.2:16291279-16291298 MS.gene52646:intron 35.0%
CAAAGATGTATGGAACTCAA+TGG + chr7.2:16290046-16290065 MS.gene52646:CDS 35.0%
CAACATTGGTCAAAGATGTA+TGG + chr7.2:16290036-16290055 MS.gene52646:CDS 35.0%
CAATATCCTAATTGACGAGT+TGG - chr7.2:16291288-16291307 None:intergenic 35.0%
CATACATCTTTGACCAATGT+TGG - chr7.2:16290038-16290057 None:intergenic 35.0%
TCATGTTAAAAGCCATTTGC+AGG + chr7.2:16291680-16291699 MS.gene52646:CDS 35.0%
TGTGAATGGTGAATTGTGTT+GGG + chr7.2:16290834-16290853 MS.gene52646:intron 35.0%
TGTGTTCTGATCCAACAATT+TGG - chr7.2:16290119-16290138 None:intergenic 35.0%
TTATCTTTCAGAAAGACCTG+AGG + chr7.2:16291930-16291949 MS.gene52646:intron 35.0%
TTGTGAATGGTGAATTGTGT+TGG + chr7.2:16290833-16290852 MS.gene52646:intron 35.0%
TTGTGATATGGGGAATAAGA+AGG + chr7.2:16290861-16290880 MS.gene52646:intron 35.0%
TTTAGGCAAAATACATCGTG+CGG - chr7.2:16291182-16291201 None:intergenic 35.0%
! ATTCTTTTAACGGAGTTGGA+TGG + chr7.2:16291057-16291076 MS.gene52646:intron 35.0%
! CAAACATCTCATGATGGTTT+TGG + chr7.2:16290198-16290217 MS.gene52646:CDS 35.0%
! TTCTTTTAACGGAGTTGGAT+GGG + chr7.2:16291058-16291077 MS.gene52646:intron 35.0%
!! TGTTGGGTTGATTGTGATAT+GGG + chr7.2:16290850-16290869 MS.gene52646:intron 35.0%
!!! CATCATGTTTTTTGGGAAAG+TGG - chr7.2:16290512-16290531 None:intergenic 35.0%
AACAACCTAGTTAAGGTCGT+TGG + chr7.2:16290087-16290106 MS.gene52646:CDS 40.0%
AACTGATCAAAACACCAACC+AGG - chr7.2:16290303-16290322 None:intergenic 40.0%
AAGAAGAGTAAGATGGACAG+AGG + chr7.2:16291471-16291490 MS.gene52646:CDS 40.0%
AAGCAGACTCCTCAACTTTA+TGG + chr7.2:16291397-16291416 MS.gene52646:CDS 40.0%
ACAACCTAGTTAAGGTCGTT+GGG + chr7.2:16290088-16290107 MS.gene52646:CDS 40.0%
ACTCAATGGGAATCCTACAT+AGG + chr7.2:16290060-16290079 MS.gene52646:CDS 40.0%
AGAAGCAGAGTTGTTAGAAG+TGG - chr7.2:16291431-16291450 None:intergenic 40.0%
AGCCTGACTATAGTAAGTCA+TGG - chr7.2:16291360-16291379 None:intergenic 40.0%
ATAATCGTTGATCACCTTGG+TGG + chr7.2:16291514-16291533 MS.gene52646:CDS 40.0%
ATAATGAATTGCGGAGGGTA+AGG + chr7.2:16290982-16291001 MS.gene52646:intron 40.0%
ATGAGATTGAAGTTCCTGGT+TGG + chr7.2:16290286-16290305 MS.gene52646:CDS 40.0%
ATGCTGAATTGTCAAGCCTA+TGG + chr7.2:16290345-16290364 MS.gene52646:CDS 40.0%
ATTGGAGGGTCTGTTATCTT+TGG - chr7.2:16290327-16290346 None:intergenic 40.0%
CAAGGTCAAACATCTCATGA+TGG + chr7.2:16290192-16290211 MS.gene52646:CDS 40.0%
CTTCTAACAACTCTGCTTCT+AGG + chr7.2:16291431-16291450 MS.gene52646:CDS 40.0%
GAGTAAATTACCGGCAAATG+AGG - chr7.2:16291760-16291779 None:intergenic 40.0%
GCACACATTCCATAAAGTTG+AGG - chr7.2:16291409-16291428 None:intergenic 40.0%
GGACAATAATGAATTGCGGA+GGG + chr7.2:16290977-16290996 MS.gene52646:intron 40.0%
GTAGTGACAATGTTGTTGCA+GGG - chr7.2:16290165-16290184 None:intergenic 40.0%
TAATGAATTGCGGAGGGTAA+GGG + chr7.2:16290983-16291002 MS.gene52646:intron 40.0%
TAGGCTTGACAATTCAGCAT+TGG - chr7.2:16290345-16290364 None:intergenic 40.0%
TGTAGTGACAATGTTGTTGC+AGG - chr7.2:16290166-16290185 None:intergenic 40.0%
! AGCGCTATTACGTCGATTAA+AGG + chr7.2:16291155-16291174 MS.gene52646:intron 40.0%
! CTTGACAATTCAGCATTGGA+GGG - chr7.2:16290341-16290360 None:intergenic 40.0%
! GACGAGTTGGAGAAATTGTT+AGG - chr7.2:16291275-16291294 None:intergenic 40.0%
! GCGCTATTACGTCGATTAAA+GGG + chr7.2:16291156-16291175 MS.gene52646:intron 40.0%
! TTTTGCACATGCGTGACTTT+AGG - chr7.2:16291199-16291218 None:intergenic 40.0%
!! GTGTTGGGTTGATTGTGATA+TGG + chr7.2:16290849-16290868 MS.gene52646:intron 40.0%
!! GTTGGGTTGATTGTGATATG+GGG + chr7.2:16290851-16290870 MS.gene52646:intron 40.0%
AATTGCAGAGGCAAAGCCTA+AGG + chr7.2:16291617-16291636 MS.gene52646:intron 45.0%
ACGCATGCATAAAGCTTTGC+AGG + chr7.2:16291827-16291846 MS.gene52646:CDS 45.0%
ACTTACTTTCTGGACCACCA+AGG - chr7.2:16291531-16291550 None:intergenic 45.0%
CAAGGAGTTTGTGAACTGAG+AGG - chr7.2:16290388-16290407 None:intergenic 45.0%
CGCATGCATAAAGCTTTGCA+GGG + chr7.2:16291828-16291847 MS.gene52646:CDS 45.0%
CGCATGTGCAAAAACAAGAG+TGG + chr7.2:16291206-16291225 MS.gene52646:intron 45.0%
CGTAGATCGACATTTCTGCA+CGG - chr7.2:16291805-16291824 None:intergenic 45.0%
CTGAATTGTCAAGCCTATGG+AGG + chr7.2:16290348-16290367 MS.gene52646:CDS 45.0%
CTTTCAGAAAGACCTGAGGA+AGG + chr7.2:16291934-16291953 MS.gene52646:intron 45.0%
GAGGATGAGATTGAAGTTCC+TGG + chr7.2:16290282-16290301 MS.gene52646:CDS 45.0%
GGGACAATAATGAATTGCGG+AGG + chr7.2:16290976-16290995 MS.gene52646:intron 45.0%
GTTGGGTCAGACCAAATTGT+TGG + chr7.2:16290105-16290124 MS.gene52646:CDS 45.0%
TCTGTTCTATGTCCTTCCTC+AGG - chr7.2:16291949-16291968 None:intergenic 45.0%
TTCAAGGGGCTTCTCATCAA+TGG - chr7.2:16290556-16290575 None:intergenic 45.0%
TTCTGTGAAGCCTCATTTGC+CGG + chr7.2:16291747-16291766 MS.gene52646:intron 45.0%
TTGTTGCAGGGTGACTTGAT+TGG - chr7.2:16290153-16290172 None:intergenic 45.0%
! GCTTGACAATTCAGCATTGG+AGG - chr7.2:16290342-16290361 None:intergenic 45.0%
CTGACCCAACGACCTTAACT+AGG - chr7.2:16290095-16290114 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 16290030 16291999 16290030 ID=MS.gene52646
chr7.2 mRNA 16290030 16291999 16290030 ID=MS.gene52646.t1;Parent=MS.gene52646
chr7.2 exon 16290030 16290596 16290030 ID=MS.gene52646.t1.exon1;Parent=MS.gene52646.t1
chr7.2 CDS 16290030 16290596 16290030 ID=cds.MS.gene52646.t1;Parent=MS.gene52646.t1
chr7.2 exon 16291373 16291544 16291373 ID=MS.gene52646.t1.exon2;Parent=MS.gene52646.t1
chr7.2 CDS 16291373 16291544 16291373 ID=cds.MS.gene52646.t1;Parent=MS.gene52646.t1
chr7.2 exon 16291625 16291701 16291625 ID=MS.gene52646.t1.exon3;Parent=MS.gene52646.t1
chr7.2 CDS 16291625 16291701 16291625 ID=cds.MS.gene52646.t1;Parent=MS.gene52646.t1
chr7.2 exon 16291810 16291849 16291810 ID=MS.gene52646.t1.exon4;Parent=MS.gene52646.t1
chr7.2 CDS 16291810 16291849 16291810 ID=cds.MS.gene52646.t1;Parent=MS.gene52646.t1
chr7.2 exon 16291941 16291999 16291941 ID=MS.gene52646.t1.exon5;Parent=MS.gene52646.t1
chr7.2 CDS 16291941 16291999 16291941 ID=cds.MS.gene52646.t1;Parent=MS.gene52646.t1
Gene Sequence

>MS.gene52646

ATGTACCAACATTGGTCAAAGATGTATGGAACTCAATGGGAATCCTACATAGGAATTAACAACCTAGTTAAGGTCGTTGGGTCAGACCAAATTGTTGGATCAGAACACATGAGTTATGAGCCAATCAAGTCACCCTGCAACAACATTGTCACTACAAATTTTCAAGGTCAAACATCTCATGATGGTTTTGGTGCAGTGAGTGTAGCCAAAATCAAAAGTAATGTTAGTTTTCAAGGTGAAGAATATTATGATGAGGATGAGATTGAAGTTCCTGGTTGGTGTTTTGATCAGTTTCCAAAGATAACAGACCCTCCAATGCTGAATTGTCAAGCCTATGGAGGAGATAATTTTACAACCTCTCAGTTCACAAACTCCTTGTACTCTGTTGATGAATCTTTGTTGTCTAACAGTGCAGATAGTCATAATTCTTCTGAAGAAGAATATAGTAATTTTCAGTCTGGAAATATGTCATTTTATGACCACTTTCCCAAAAAACATGATGAATTGTTTAGGAATGATGCTTCCATTGATGAGAAGCCCCTTGAAATTTCTTTTCAGAGAACTAAGGTAATTCTTTCTTTCTTTGTATGTAGCTTGTAATTTTTTATTCCATCTGAATTATATATGAAATGATATATCATGTTGTGCTTTAACTTGTTTAATTATATTAGAGATTAGGGCTGTCCAAAAAAAGTTACAGTATTCTTTGTGCATTCATAACCTGTTTAATTATAGTATTAGATAATAGATATTAGTCCTTTTAAGTATTTCATGGATTTTTTTTTTTTAATGGTTTCATCTATTTGTGAATGGTGAATTGTGTTGGGTTGATTGTGATATGGGGAATAAGAAGGTGATATAATATGAGATTGAAATTAATGTTTTGATTTTTCTTCCATATATGCAATGAATCTAATTATGAAATGAAATTTAGGGTTTTGTGAAAGGGACAATAATGAATTGCGGAGGGTAAGGGTCCAATCTAACGTGTTTTTCTAATAAAATTGATTAAAGTGGTCACATAAACATTCTTTTAACGGAGTTGGATGGGAAACTAAAAAGAAAATCAATGGTGTCCAAGTTATGAGACTTATAGTTGGGAATTTTTTTTTAAAGGACTACTAAAGCGCTATTACGTCGATTAAAGGGCCGCACGATGTATTTTGCCTAAAGTCACGCATGTGCAAAAACAAGAGTGGTTTACTAGTAATCTATTTATTCGGGTTAAGTGCTAAGTGTTAACCTAACAATTTCTCCAACTCGTCAATTAGGATATTGTAATCTATGCCTTTTTATTTGTTTATTTTCCTTTCTAATAAGCTATAATCCATGACTTACTATAGTCAGGCTCATCTACAAAGTCACAAAAGCAGACTCCTCAACTTTATGGAATGTGTGCCACTTCTAACAACTCTGCTTCTAGGAAAGCTCCAACATGTAAAAGAAGAGTAAGATGGACAGAGGATCTGCATGAATCATTCATGATAATCGTTGATCACCTTGGTGGTCCAGAAAGTAAGTAATTAACTAAGTAATAGCTTATAGCATTAGTTACACATAAGCAAATTCAATTAATTCACTTATTATAATTGCAGAGGCAAAGCCTAAGGCTATACTAGATATGATGAAATCAAATTTGCTATCCATTTCTCATGTTAAAAGCCATTTGCAGGTAAAACTATTTCCATTCAACAATTTCAATAATTTGTAAATGTTGTTCTGTGAAGCCTCATTTGCCGGTAATTTACTCTAACATTGTTCTTATATGATTGCCGTGCAGAAATGTCGATCTACGATACGCATGCATAAAGCTTTGCAGGGTAAATTAATTTTTTCATTGCATTCTATTACAACACTGCTTACTTATTAAGGCTATGCGTATATTGTGACACGTTTATCTTTATCTTTCAGAAAGACCTGAGGAAGGACATAGAACAGATAGAGTCGCAGATCTTCAACTCAAAATGTAA
Protein sequence

>MS.gene52646.t1

MYQHWSKMYGTQWESYIGINNLVKVVGSDQIVGSEHMSYEPIKSPCNNIVTTNFQGQTSHDGFGAVSVAKIKSNVSFQGEEYYDEDEIEVPGWCFDQFPKITDPPMLNCQAYGGDNFTTSQFTNSLYSVDESLLSNSADSHNSSEEEYSNFQSGNMSFYDHFPKKHDELFRNDASIDEKPLEISFQRTKSGSSTKSQKQTPQLYGMCATSNNSASRKAPTCKRRVRWTEDLHESFMIIVDHLGGPEKAKPKAILDMMKSNLLSISHVKSHLQKCRSTIRMHKALQERPEEGHRTDRVADLQLKM