Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52658.t1 | XP_013466755.2 | 49 | 304 | 53 | 2 | 40 | 241 | 506 | 809 | 2.80E-70 | 275.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52658.t1 | Q7XUC5 | 50.8 | 63 | 31 | 0 | 291 | 353 | 37 | 99 | 7.4e-11 | 69.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52658.t1 | A0A396JLZ7 | 72.9 | 129 | 35 | 0 | 85 | 213 | 4 | 132 | 1.2e-49 | 206.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene52658.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52658.t1 | MTR_1g035640 | 52.555 | 137 | 65 | 0 | 85 | 221 | 165 | 301 | 2.87e-40 | 147 |
| MS.gene52658.t1 | MTR_1g033740 | 80.282 | 71 | 14 | 0 | 10 | 80 | 4 | 74 | 8.38e-35 | 126 |
| MS.gene52658.t1 | MTR_1g035570 | 47.458 | 118 | 62 | 0 | 93 | 210 | 180 | 297 | 3.85e-30 | 119 |
| MS.gene52658.t1 | MTR_1g035480 | 70.588 | 68 | 20 | 0 | 13 | 80 | 2 | 69 | 5.66e-29 | 110 |
| MS.gene52658.t1 | MTR_1g050845 | 46.429 | 168 | 72 | 6 | 89 | 241 | 155 | 319 | 2.07e-27 | 114 |
| MS.gene52658.t1 | MTR_1g035620 | 43.716 | 183 | 81 | 6 | 75 | 241 | 156 | 332 | 2.95e-27 | 111 |
| MS.gene52658.t1 | MTR_1g035490 | 41.722 | 151 | 74 | 2 | 101 | 237 | 97 | 247 | 9.07e-27 | 108 |
| MS.gene52658.t1 | MTR_1g035500 | 50.000 | 100 | 43 | 2 | 10 | 102 | 6 | 105 | 2.04e-26 | 104 |
| MS.gene52658.t1 | MTR_6g061070 | 44.898 | 147 | 72 | 4 | 74 | 211 | 187 | 333 | 4.49e-26 | 108 |
| MS.gene52658.t1 | MTR_6g061070 | 66.667 | 66 | 22 | 0 | 13 | 78 | 3 | 68 | 4.09e-25 | 106 |
| MS.gene52658.t1 | MTR_5g044670 | 36.667 | 120 | 71 | 3 | 100 | 218 | 204 | 319 | 1.54e-15 | 77.0 |
| MS.gene52658.t1 | MTR_1g035470 | 51.515 | 66 | 26 | 1 | 43 | 102 | 1 | 66 | 5.09e-15 | 71.6 |
| MS.gene52658.t1 | MTR_1g035540 | 60.417 | 48 | 19 | 0 | 165 | 212 | 31 | 78 | 6.74e-14 | 68.6 |
| MS.gene52658.t1 | MTR_8g103940 | 38.095 | 126 | 67 | 6 | 91 | 212 | 226 | 344 | 1.02e-12 | 69.3 |
| MS.gene52658.t1 | MTR_0015s0140 | 39.189 | 74 | 45 | 0 | 281 | 354 | 27 | 100 | 2.67e-12 | 67.8 |
| MS.gene52658.t1 | MTR_1g108780 | 36.170 | 141 | 77 | 6 | 67 | 204 | 164 | 294 | 4.50e-12 | 67.4 |
| MS.gene52658.t1 | MTR_3g032700 | 42.857 | 91 | 42 | 3 | 267 | 354 | 6 | 89 | 5.28e-12 | 67.0 |
| MS.gene52658.t1 | MTR_3g098790 | 32.117 | 137 | 84 | 4 | 81 | 208 | 171 | 307 | 7.03e-12 | 66.2 |
| MS.gene52658.t1 | MTR_3g032660 | 41.758 | 91 | 43 | 3 | 267 | 354 | 6 | 89 | 1.39e-11 | 65.9 |
| MS.gene52658.t1 | MTR_4g113210 | 50.847 | 59 | 29 | 0 | 289 | 347 | 13 | 71 | 1.47e-11 | 64.3 |
| MS.gene52658.t1 | MTR_1g035440 | 50.000 | 52 | 26 | 0 | 25 | 76 | 12 | 63 | 1.82e-11 | 63.9 |
| MS.gene52658.t1 | MTR_1g035520 | 72.222 | 36 | 10 | 0 | 43 | 78 | 87 | 122 | 3.10e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52658.t1 | AT5G06750 | 47.541 | 61 | 32 | 0 | 294 | 354 | 43 | 103 | 1.10e-12 | 68.9 |
| MS.gene52658.t1 | AT5G06750 | 47.541 | 61 | 32 | 0 | 294 | 354 | 43 | 103 | 1.10e-12 | 68.9 |
Find 79 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGCTATCAGAAACAAATTT+AGG | 0.187280 | 7.2:-16158681 | MS.gene52658:CDS |
| TTCCAACAAAGAGTGCTTTA+TGG | 0.196581 | 7.2:+16158166 | None:intergenic |
| AAAACTTGGATTCTCATTAT+TGG | 0.211537 | 7.2:+16159981 | None:intergenic |
| TATCTCTCTACAAAATTCTT+TGG | 0.250785 | 7.2:+16160665 | None:intergenic |
| ACTCCGAGTGCAAAATGTTT+TGG | 0.261076 | 7.2:-16160598 | MS.gene52658:CDS |
| TAACTAACTACATTGTAAAA+AGG | 0.267766 | 7.2:+16158625 | None:intergenic |
| TGGAAGTGACGGCGCCATTT+TGG | 0.271454 | 7.2:+16158133 | None:intergenic |
| GGAATTTACAATGGCCAAAA+TGG | 0.274212 | 7.2:-16158147 | MS.gene52658:CDS |
| TCAATTATTGAACATCTCTT+AGG | 0.278157 | 7.2:+16160021 | None:intergenic |
| CGGAGTCATTTGGAAGTCTA+AGG | 0.284745 | 7.2:+16160615 | None:intergenic |
| GAATTTGATGATGATCCTTT+AGG | 0.300625 | 7.2:-16158288 | MS.gene52658:CDS |
| TTTGGAAGTCTAAGGGATAT+TGG | 0.342835 | 7.2:+16160623 | None:intergenic |
| GGGACCCCTTCTACAAATTC+AGG | 0.347036 | 7.2:-16159426 | MS.gene52658:CDS |
| AATTTGATGATGATCCTTTA+GGG | 0.351572 | 7.2:-16158287 | MS.gene52658:CDS |
| GAACCTCCTGAATTTGTAGA+AGG | 0.363430 | 7.2:+16159420 | None:intergenic |
| TAGCATCACTGCCACGGCCT+TGG | 0.370846 | 7.2:+16161622 | None:intergenic |
| TTGACGGGATCGCAAGGATA+AGG | 0.384450 | 7.2:-16159802 | MS.gene52658:CDS |
| GGCTATCAGAAACAAATTTA+GGG | 0.386218 | 7.2:-16158680 | MS.gene52658:CDS |
| CGCCAAACTGATGCTCTTCG+AGG | 0.388519 | 7.2:+16158253 | None:intergenic |
| CCTTGCAACTTGTTAGGGCT+TGG | 0.397107 | 7.2:+16159590 | None:intergenic |
| GAGGTTATTACTCAAGAAGT+TGG | 0.412926 | 7.2:+16158113 | None:intergenic |
| GGCCATAAAGCACTCTTTGT+TGG | 0.446761 | 7.2:-16158168 | MS.gene52658:CDS |
| GGCTTGGTTCCTCACTAGCT+CGG | 0.456216 | 7.2:+16159606 | None:intergenic |
| GGTTAGGTCGAATGGTGTTA+TGG | 0.459338 | 7.2:-16158214 | MS.gene52658:CDS |
| TCTGATAGCCGCTGGTCATA+TGG | 0.459752 | 7.2:+16158693 | None:intergenic |
| TGACGGGATCGCAAGGATAA+GGG | 0.470585 | 7.2:-16159801 | MS.gene52658:CDS |
| ACTCACGAAGTAGAATAGTT+TGG | 0.476337 | 7.2:+16161583 | None:intergenic |
| AATGTCAGTGTCTAGTTGAA+TGG | 0.484492 | 7.2:+16161665 | None:intergenic |
| TGAGCGTGCTTACTAGCTCT+TGG | 0.484893 | 7.2:+16161553 | None:intergenic |
| AGGCCGTGGCAGTGATGCTA+AGG | 0.488026 | 7.2:-16161619 | MS.gene52658:CDS |
| GACCTCGAAGAGCATCAGTT+TGG | 0.488137 | 7.2:-16158255 | MS.gene52658:CDS |
| TGGCGAAACCTCAATGGTTG+TGG | 0.490172 | 7.2:-16158235 | MS.gene52658:CDS |
| AAACCTCAATGGTTGTGGTT+AGG | 0.492074 | 7.2:-16158230 | MS.gene52658:CDS |
| AATACTTGAACGAGTTTGAC+GGG | 0.492831 | 7.2:-16159817 | MS.gene52658:CDS |
| ATCAAATTCATTAATTTCAG+CGG | 0.510788 | 7.2:+16158302 | None:intergenic |
| GCCACGGCCTTGGTGAATGC+AGG | 0.515591 | 7.2:+16161632 | None:intergenic |
| CGACCTAACCACAACCATTG+AGG | 0.521901 | 7.2:+16158227 | None:intergenic |
| TCAGTTTGGCGAAACCTCAA+TGG | 0.529839 | 7.2:-16158241 | MS.gene52658:CDS |
| AAGGAAAATAACTTGCAAGT+TGG | 0.532958 | 7.2:-16159689 | MS.gene52658:CDS |
| ATGATCCTTTAGGGTGGTCA+AGG | 0.539972 | 7.2:-16158278 | MS.gene52658:CDS |
| GGGTTGATGCAGGTAGAACT+TGG | 0.542033 | 7.2:-16159781 | MS.gene52658:CDS |
| GAATACTTGAACGAGTTTGA+CGG | 0.544212 | 7.2:-16159818 | MS.gene52658:CDS |
| AGGTCCCTTGACCACCCTAA+AGG | 0.544479 | 7.2:+16158273 | None:intergenic |
| ACCTGCATTCACCAAGGCCG+TGG | 0.545742 | 7.2:-16161633 | MS.gene52658:CDS |
| CTCTTTGTTGGAATTTACAA+TGG | 0.546633 | 7.2:-16158156 | MS.gene52658:CDS |
| ATGACACAAACTTATGCTCA+TGG | 0.555807 | 7.2:-16159949 | MS.gene52658:CDS |
| TTCTATTACCCGAGCTAGTG+AGG | 0.556254 | 7.2:-16159615 | MS.gene52658:CDS |
| CTTTATGGCCAACATCAAGT+TGG | 0.556863 | 7.2:+16158181 | None:intergenic |
| GCTTGGTTCCTCACTAGCTC+GGG | 0.557073 | 7.2:+16159607 | None:intergenic |
| AACCTCCTGAATTTGTAGAA+GGG | 0.561604 | 7.2:+16159421 | None:intergenic |
| ACCTCCTGAATTTGTAGAAG+GGG | 0.563047 | 7.2:+16159422 | None:intergenic |
| ATTCAGGAGGTTCTAATGTG+TGG | 0.564529 | 7.2:-16159410 | MS.gene52658:CDS |
| ACGAGTTTGACGGGATCGCA+AGG | 0.567127 | 7.2:-16159808 | MS.gene52658:CDS |
| GATCGCAACCAACTTGATGT+TGG | 0.577699 | 7.2:-16158189 | MS.gene52658:CDS |
| GCAAGGATAAGGGTTGATGC+AGG | 0.581356 | 7.2:-16159791 | MS.gene52658:CDS |
| AATTTGTTTCTGATAGCCGC+TGG | 0.581720 | 7.2:+16158685 | None:intergenic |
| ATGGTTGTGGTTAGGTCGAA+TGG | 0.582368 | 7.2:-16158222 | MS.gene52658:CDS |
| AACTTTGCAGGTACTAACAA+AGG | 0.591292 | 7.2:-16160054 | MS.gene52658:intron |
| ACGGATGCCACAGCAGTAGC+CGG | 0.592421 | 7.2:+16158716 | None:intergenic |
| CCAAGCCCTAACAAGTTGCA+AGG | 0.593191 | 7.2:-16159590 | MS.gene52658:intron |
| AATTAATCATACCGCGTACG+AGG | 0.595783 | 7.2:+16159356 | None:intergenic |
| GGAGTCATTTGGAAGTCTAA+GGG | 0.598879 | 7.2:+16160616 | None:intergenic |
| GCAGGTACTAACAAAGGAGG+AGG | 0.600379 | 7.2:-16160048 | MS.gene52658:intron |
| ACTCAAGAAGTTGGAAGTGA+CGG | 0.602954 | 7.2:+16158122 | None:intergenic |
| TTCCCTTAGCATCACTGCCA+CGG | 0.603534 | 7.2:+16161616 | None:intergenic |
| CACTACATAGAATTCAGAAG+AGG | 0.623991 | 7.2:+16158094 | None:intergenic |
| ACCCCTTCTACAAATTCAGG+AGG | 0.639356 | 7.2:-16159423 | MS.gene52658:CDS |
| ATAGAAATATTAAATGAAAG+CGG | 0.641791 | 7.2:+16159632 | None:intergenic |
| ATAGCCGCTGGTCATATGGA+CGG | 0.642970 | 7.2:+16158697 | None:intergenic |
| TGATCCTTTAGGGTGGTCAA+GGG | 0.644376 | 7.2:-16158277 | MS.gene52658:CDS |
| GCTACTACCGGCTACTGCTG+TGG | 0.645480 | 7.2:-16158723 | MS.gene52658:CDS |
| GGCCGTGGCAGTGATGCTAA+GGG | 0.651042 | 7.2:-16161618 | MS.gene52658:CDS |
| TTGATGATGATCCTTTAGGG+TGG | 0.657270 | 7.2:-16158284 | MS.gene52658:CDS |
| TAGGTCGAATGGTGTTATGG+AGG | 0.666731 | 7.2:-16158211 | MS.gene52658:CDS |
| TGGTTGGTCTATATTCAACA+AGG | 0.670836 | 7.2:-16159708 | MS.gene52658:CDS |
| TTTGCAGGTACTAACAAAGG+AGG | 0.671084 | 7.2:-16160051 | MS.gene52658:intron |
| GCTTCACCCTAGGCTACTAC+CGG | 0.672707 | 7.2:-16158735 | MS.gene52658:intron |
| CAACATACCTGCATTCACCA+AGG | 0.683546 | 7.2:-16161639 | MS.gene52658:CDS |
| GCATCCGTCCATATGACCAG+CGG | 0.687433 | 7.2:-16158701 | MS.gene52658:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTTTTATAATAATGAT+CGG | - | chr7.2:16158508-16158527 | MS.gene52658:intron | 10.0% |
| !!! | TTTGATTATTTTTTTTTTGA+AGG | - | chr7.2:16158462-16158481 | MS.gene52658:intron | 10.0% |
| !! | ATAGAAATATTAAATGAAAG+CGG | + | chr7.2:16160147-16160166 | None:intergenic | 15.0% |
| !! | ATTGATAAAAGGAATTAAAA+AGG | + | chr7.2:16160313-16160332 | None:intergenic | 15.0% |
| !! | TTAATTACTTACATAAAATG+TGG | - | chr7.2:16160437-16160456 | MS.gene52658:intron | 15.0% |
| !!! | ATATTTTGATGATTGAATAT+TGG | - | chr7.2:16160948-16160967 | MS.gene52658:intron | 15.0% |
| !!! | TATTCTTTTGAAAACTTATT+TGG | + | chr7.2:16159943-16159962 | None:intergenic | 15.0% |
| !!! | TTGAAAATGTTTACTAATTT+TGG | - | chr7.2:16159872-16159891 | MS.gene52658:intron | 15.0% |
| !! | AAAATTTATGAAGTTGAAAG+TGG | - | chr7.2:16160612-16160631 | MS.gene52658:CDS | 20.0% |
| !! | AACTACTGAAAATAGAAAAA+TGG | + | chr7.2:16161263-16161282 | None:intergenic | 20.0% |
| !! | AATATCATTTACTATATGTG+TGG | + | chr7.2:16160530-16160549 | None:intergenic | 20.0% |
| !! | AATGACTAGGTTATAAAAAA+GGG | - | chr7.2:16160330-16160349 | MS.gene52658:intron | 20.0% |
| !! | ACAAGTCAAAAATATACAAA+TGG | + | chr7.2:16158694-16158713 | None:intergenic | 20.0% |
| !! | AGTCTTAGATGATTTAAAAA+TGG | + | chr7.2:16158899-16158918 | None:intergenic | 20.0% |
| !! | ATATATCTAACTAAACTATC+AGG | + | chr7.2:16161235-16161254 | None:intergenic | 20.0% |
| !! | ATCAAATTCATTAATTTCAG+CGG | + | chr7.2:16161477-16161496 | None:intergenic | 20.0% |
| !! | CTTACAATAACAAAATAACA+AGG | + | chr7.2:16160857-16160876 | None:intergenic | 20.0% |
| !! | TAACTAACTACATTGTAAAA+AGG | + | chr7.2:16161154-16161173 | None:intergenic | 20.0% |
| !!! | AGTTAATTTTCTTTTTCTTG+AGG | + | chr7.2:16159434-16159453 | None:intergenic | 20.0% |
| !!! | CTGTATATTGATTTTGTATT+TGG | - | chr7.2:16158972-16158991 | MS.gene52658:intron | 20.0% |
| !!! | CTTTTAGTTTTTCAATACAA+AGG | - | chr7.2:16159270-16159289 | MS.gene52658:intron | 20.0% |
| !!! | GTTAATTTTCTTTTTCTTGA+GGG | + | chr7.2:16159433-16159452 | None:intergenic | 20.0% |
| !!! | TACAATGTTTGTTAGAATTT+TGG | + | chr7.2:16159374-16159393 | None:intergenic | 20.0% |
| !!! | TTAATTTTCTTTTTCTTGAG+GGG | + | chr7.2:16159432-16159451 | None:intergenic | 20.0% |
| !!! | TTTTAAATTAACGAGGTTAT+CGG | + | chr7.2:16161126-16161145 | None:intergenic | 20.0% |
| ! | AAAACCAATGAGTTTAAACT+TGG | + | chr7.2:16159068-16159087 | None:intergenic | 25.0% |
| ! | AAAACTTGGATTCTCATTAT+TGG | + | chr7.2:16159798-16159817 | None:intergenic | 25.0% |
| ! | AAACAATAAAATGTTCACTC+AGG | + | chr7.2:16158653-16158672 | None:intergenic | 25.0% |
| ! | AAAGCAAACTTACACAAAAA+TGG | + | chr7.2:16159853-16159872 | None:intergenic | 25.0% |
| ! | AAAGTTATGTATTATCGTAG+AGG | - | chr7.2:16160655-16160674 | MS.gene52658:CDS | 25.0% |
| ! | AACATCTCTAGTAAAATTTC+AGG | - | chr7.2:16158586-16158605 | MS.gene52658:intron | 25.0% |
| ! | ACATCTCTAGTAAAATTTCA+GGG | - | chr7.2:16158587-16158606 | MS.gene52658:intron | 25.0% |
| ! | AGAATATACATTAACTTTGC+AGG | - | chr7.2:16159710-16159729 | MS.gene52658:CDS | 25.0% |
| ! | AGTCAAAAATATACAAATGG+AGG | + | chr7.2:16158691-16158710 | None:intergenic | 25.0% |
| ! | ATAACCTAGTCATTGATAAA+AGG | + | chr7.2:16160324-16160343 | None:intergenic | 25.0% |
| ! | CAATGACTAGGTTATAAAAA+AGG | - | chr7.2:16160329-16160348 | MS.gene52658:intron | 25.0% |
| ! | GACTTATCATGTTAGTAATT+TGG | - | chr7.2:16158915-16158934 | MS.gene52658:intron | 25.0% |
| ! | GATGATTTAAAAATGGACAA+TGG | + | chr7.2:16158892-16158911 | None:intergenic | 25.0% |
| ! | GTATATTCTAATCATTTCCA+AGG | + | chr7.2:16159699-16159718 | None:intergenic | 25.0% |
| ! | GTTATTGTAAGCAACTATAT+TGG | - | chr7.2:16160866-16160885 | MS.gene52658:intron | 25.0% |
| ! | TATCTCTCTACAAAATTCTT+TGG | + | chr7.2:16159114-16159133 | None:intergenic | 25.0% |
| ! | TCAATTATTGAACATCTCTT+AGG | + | chr7.2:16159758-16159777 | None:intergenic | 25.0% |
| ! | TTAAAAATGGACAATGGTTT+AGG | + | chr7.2:16158886-16158905 | None:intergenic | 25.0% |
| ! | TTGGTTGAATATTATCTTGA+CGG | - | chr7.2:16160911-16160930 | MS.gene52658:intron | 25.0% |
| !! | AATGGTTTAGGTTACAAAAA+TGG | + | chr7.2:16158874-16158893 | None:intergenic | 25.0% |
| !! | AATTCCTTTTATCAATGACT+AGG | - | chr7.2:16160317-16160336 | MS.gene52658:intron | 25.0% |
| !! | AGAATTTTGTAGAGAGATAT+TGG | - | chr7.2:16159115-16159134 | MS.gene52658:intron | 25.0% |
| !! | GGAAGATTTTTAAATTAACG+AGG | + | chr7.2:16161133-16161152 | None:intergenic | 25.0% |
| !!! | AATTTGATGATGATCCTTTA+GGG | - | chr7.2:16161489-16161508 | MS.gene52658:intron | 25.0% |
| !!! | AGAATGAGTCTTGTTTATTA+AGG | + | chr7.2:16158326-16158345 | None:intergenic | 25.0% |
| !!! | GTCATTTTAAGTTCAAAACT+TGG | + | chr7.2:16159812-16159831 | None:intergenic | 25.0% |
| !!! | TAGTTTTTCAATACAAAGGA+GGG | - | chr7.2:16159274-16159293 | MS.gene52658:intron | 25.0% |
| !!! | TTAGTTTTTCAATACAAAGG+AGG | - | chr7.2:16159273-16159292 | MS.gene52658:intron | 25.0% |
| !!! | TTTTGTATTTGGTTTGAGTT+TGG | - | chr7.2:16158983-16159002 | MS.gene52658:intron | 25.0% |
| AAACATGATCTTGTGTTCTT+GGG | + | chr7.2:16161411-16161430 | None:intergenic | 30.0% | |
| AAAGATTGCAGATCAAAGAT+TGG | - | chr7.2:16160701-16160720 | MS.gene52658:intron | 30.0% | |
| AACTTTCACAAGTGTAAGTT+TGG | - | chr7.2:16158832-16158851 | MS.gene52658:intron | 30.0% | |
| AAGAGAAACTAATGAAGTAG+AGG | + | chr7.2:16159557-16159576 | None:intergenic | 30.0% | |
| ATAGTGTTCTAGTGTGATAA+AGG | + | chr7.2:16158753-16158772 | None:intergenic | 30.0% | |
| ATGATATATCATAGCTTGAG+TGG | + | chr7.2:16158408-16158427 | None:intergenic | 30.0% | |
| CAATCCAAGTTTAAACTCAT+TGG | - | chr7.2:16159061-16159080 | MS.gene52658:intron | 30.0% | |
| CATCTCTAGTAAAATTTCAG+GGG | - | chr7.2:16158588-16158607 | MS.gene52658:intron | 30.0% | |
| CTCTTTGTTGGAATTTACAA+TGG | - | chr7.2:16161620-16161639 | MS.gene52658:CDS | 30.0% | |
| GGCTATCAGAAACAAATTTA+GGG | - | chr7.2:16161096-16161115 | MS.gene52658:intron | 30.0% | |
| TATACCATGAATTGAAACAG+AGG | - | chr7.2:16159914-16159933 | MS.gene52658:intron | 30.0% | |
| TGAATTGGAAAAGATTTGCA+CGG | - | chr7.2:16159229-16159248 | MS.gene52658:intron | 30.0% | |
| TGATATATCATAGCTTGAGT+GGG | + | chr7.2:16158407-16158426 | None:intergenic | 30.0% | |
| TGGTTGAATATTATCTTGAC+GGG | - | chr7.2:16160912-16160931 | MS.gene52658:intron | 30.0% | |
| TTGGATTGAACAAGTAATGA+AGG | + | chr7.2:16159049-16159068 | None:intergenic | 30.0% | |
| ! | AAGGAAAATAACTTGCAAGT+TGG | - | chr7.2:16160087-16160106 | MS.gene52658:intron | 30.0% |
| ! | ATGATGTTTGGTTTCTGAAT+TGG | - | chr7.2:16159214-16159233 | MS.gene52658:intron | 30.0% |
| !! | AAAAACCTTGCAACTTGTTA+GGG | + | chr7.2:16160194-16160213 | None:intergenic | 30.0% |
| !! | GAATTTGATGATGATCCTTT+AGG | - | chr7.2:16161488-16161507 | MS.gene52658:intron | 30.0% |
| !! | GTAATTTGGTTAGCTCTTTT+CGG | - | chr7.2:16158929-16158948 | MS.gene52658:intron | 30.0% |
| !! | GTCTACTAAAAAAAAGCATC+TGG | + | chr7.2:16160576-16160595 | None:intergenic | 30.0% |
| !!! | ACTTGCCTAAGACTTTTTTA+TGG | + | chr7.2:16159533-16159552 | None:intergenic | 30.0% |
| !!! | AGATGTTCTTTTTTGCAAGT+TGG | - | chr7.2:16160048-16160067 | MS.gene52658:intron | 30.0% |
| !!! | CTTGCCTAAGACTTTTTTAT+GGG | + | chr7.2:16159532-16159551 | None:intergenic | 30.0% |
| AACACAAGATCATGTTTCAG+TGG | - | chr7.2:16161414-16161433 | MS.gene52658:intron | 35.0% | |
| AACATGATCTTGTGTTCTTG+GGG | + | chr7.2:16161410-16161429 | None:intergenic | 35.0% | |
| AACCTCCTGAATTTGTAGAA+GGG | + | chr7.2:16160358-16160377 | None:intergenic | 35.0% | |
| AACTTTGCAGGTACTAACAA+AGG | - | chr7.2:16159722-16159741 | MS.gene52658:CDS | 35.0% | |
| AATACTTGAACGAGTTTGAC+GGG | - | chr7.2:16159959-16159978 | MS.gene52658:CDS | 35.0% | |
| AATGTCAGTGTCTAGTTGAA+TGG | + | chr7.2:16158114-16158133 | None:intergenic | 35.0% | |
| ACTCACGAAGTAGAATAGTT+TGG | + | chr7.2:16158196-16158215 | None:intergenic | 35.0% | |
| AGTTGTCAGGGTTGAAATAA+TGG | + | chr7.2:16158382-16158401 | None:intergenic | 35.0% | |
| ATAGTTGAAACACTCCATGT+CGG | - | chr7.2:16161009-16161028 | MS.gene52658:intron | 35.0% | |
| ATGACACAAACTTATGCTCA+TGG | - | chr7.2:16159827-16159846 | MS.gene52658:CDS | 35.0% | |
| CGGCTATCAGAAACAAATTT+AGG | - | chr7.2:16161095-16161114 | MS.gene52658:intron | 35.0% | |
| GAAACATGATCTTGTGTTCT+TGG | + | chr7.2:16161412-16161431 | None:intergenic | 35.0% | |
| GAATACTTGAACGAGTTTGA+CGG | - | chr7.2:16159958-16159977 | MS.gene52658:CDS | 35.0% | |
| GAGGTTATTACTCAAGAAGT+TGG | + | chr7.2:16161666-16161685 | None:intergenic | 35.0% | |
| GATTGAACAAGTAATGAAGG+AGG | + | chr7.2:16159046-16159065 | None:intergenic | 35.0% | |
| GCAACCCATAAAAAAGTCTT+AGG | - | chr7.2:16159525-16159544 | MS.gene52658:intron | 35.0% | |
| GGAATTTACAATGGCCAAAA+TGG | - | chr7.2:16161629-16161648 | MS.gene52658:CDS | 35.0% | |
| GTATCCTCTGTTTCAATTCA+TGG | + | chr7.2:16159921-16159940 | None:intergenic | 35.0% | |
| GTTGTCAGGGTTGAAATAAT+GGG | + | chr7.2:16158381-16158400 | None:intergenic | 35.0% | |
| TGTAAACAAGAAGAGAGTGA+TGG | - | chr7.2:16159390-16159409 | MS.gene52658:CDS | 35.0% | |
| TGTGAAAGTTTGTAAAAGCG+TGG | + | chr7.2:16158822-16158841 | None:intergenic | 35.0% | |
| TTTGGAAGTCTAAGGGATAT+TGG | + | chr7.2:16159156-16159175 | None:intergenic | 35.0% | |
| ! | AATATTATCTTGACGGGTCT+TGG | - | chr7.2:16160918-16160937 | MS.gene52658:intron | 35.0% |
| ! | ACATGGAGTGTTTCAACTAT+AGG | + | chr7.2:16161009-16161028 | None:intergenic | 35.0% |
| ! | CTTTTTCTTGAGGGGATATT+TGG | + | chr7.2:16159424-16159443 | None:intergenic | 35.0% |
| ! | GAAAAACCTTGCAACTTGTT+AGG | + | chr7.2:16160195-16160214 | None:intergenic | 35.0% |
| ! | GTGAAAGTTTGTAAAAGCGT+GGG | + | chr7.2:16158821-16158840 | None:intergenic | 35.0% |
| !! | AAAATGTTTTGGGCAAAACG+TGG | - | chr7.2:16159189-16159208 | MS.gene52658:intron | 35.0% |
| !! | CGAAACTTGTTGATGAACTT+TGG | + | chr7.2:16159019-16159038 | None:intergenic | 35.0% |
| !! | TGGTTGGTCTATATTCAACA+AGG | - | chr7.2:16160068-16160087 | MS.gene52658:intron | 35.0% |
| !! | TTCCAACAAAGAGTGCTTTA+TGG | + | chr7.2:16161613-16161632 | None:intergenic | 35.0% |
| !!! | GTTCTTTTTTGCAAGTTGGT+TGG | - | chr7.2:16160052-16160071 | MS.gene52658:intron | 35.0% |
| AAACCTCAATGGTTGTGGTT+AGG | - | chr7.2:16161546-16161565 | MS.gene52658:intron | 40.0% | |
| AATATTAAGTAGTCGCGCAG+TGG | - | chr7.2:16158535-16158554 | MS.gene52658:intron | 40.0% | |
| AATTAATCATACCGCGTACG+AGG | + | chr7.2:16160423-16160442 | None:intergenic | 40.0% | |
| ACCTCCTGAATTTGTAGAAG+GGG | + | chr7.2:16160357-16160376 | None:intergenic | 40.0% | |
| ACTCAAGAAGTTGGAAGTGA+CGG | + | chr7.2:16161657-16161676 | None:intergenic | 40.0% | |
| CTTTATGGCCAACATCAAGT+TGG | + | chr7.2:16161598-16161617 | None:intergenic | 40.0% | |
| GAACCTCCTGAATTTGTAGA+AGG | + | chr7.2:16160359-16160378 | None:intergenic | 40.0% | |
| GAGAATAAGTGATGAGTGTG+TGG | + | chr7.2:16161333-16161352 | None:intergenic | 40.0% | |
| GGAGTCATTTGGAAGTCTAA+GGG | + | chr7.2:16159163-16159182 | None:intergenic | 40.0% | |
| TCAATATACAGATCCCTTGC+CGG | + | chr7.2:16158963-16158982 | None:intergenic | 40.0% | |
| TTCTTGGGGAAACTCAAACT+AGG | + | chr7.2:16161396-16161415 | None:intergenic | 40.0% | |
| TTTGCAGGTACTAACAAAGG+AGG | - | chr7.2:16159725-16159744 | MS.gene52658:CDS | 40.0% | |
| ! | ACTCCGAGTGCAAAATGTTT+TGG | - | chr7.2:16159178-16159197 | MS.gene52658:intron | 40.0% |
| ! | ATTCAGGAGGTTCTAATGTG+TGG | - | chr7.2:16160366-16160385 | MS.gene52658:intron | 40.0% |
| ! | ATTTTGCACTCGGAGTCATT+TGG | + | chr7.2:16159174-16159193 | None:intergenic | 40.0% |
| ! | CAAAACGTGGTGATGATGTT+TGG | - | chr7.2:16159202-16159221 | MS.gene52658:intron | 40.0% |
| ! | CATTCTCTTCTTCTAGCTAG+AGG | - | chr7.2:16161354-16161373 | MS.gene52658:intron | 40.0% |
| ! | CTCCGAGTGCAAAATGTTTT+GGG | - | chr7.2:16159179-16159198 | MS.gene52658:intron | 40.0% |
| ! | TGCCCAAAACATTTTGCACT+CGG | + | chr7.2:16159184-16159203 | None:intergenic | 40.0% |
| ! | TTTTGTGAATTCCTCGTACG+CGG | - | chr7.2:16160409-16160428 | MS.gene52658:intron | 40.0% |
| !! | AATTTGTTTCTGATAGCCGC+TGG | + | chr7.2:16161094-16161113 | None:intergenic | 40.0% |
| !! | TTGATGATGATCCTTTAGGG+TGG | - | chr7.2:16161492-16161511 | MS.gene52658:intron | 40.0% |
| ACCCCTTCTACAAATTCAGG+AGG | - | chr7.2:16160353-16160372 | MS.gene52658:intron | 45.0% | |
| ATGGTTGTGGTTAGGTCGAA+TGG | - | chr7.2:16161554-16161573 | MS.gene52658:intron | 45.0% | |
| CAACATACCTGCATTCACCA+AGG | - | chr7.2:16158137-16158156 | MS.gene52658:CDS | 45.0% | |
| CGGAGTCATTTGGAAGTCTA+AGG | + | chr7.2:16159164-16159183 | None:intergenic | 45.0% | |
| CTAAAGCTAACTGTGTGCCT+TGG | - | chr7.2:16159679-16159698 | MS.gene52658:CDS | 45.0% | |
| GATCGCAACCAACTTGATGT+TGG | - | chr7.2:16161587-16161606 | MS.gene52658:CDS | 45.0% | |
| TCAGTTTGGCGAAACCTCAA+TGG | - | chr7.2:16161535-16161554 | MS.gene52658:intron | 45.0% | |
| TTCTATTACCCGAGCTAGTG+AGG | - | chr7.2:16160161-16160180 | MS.gene52658:intron | 45.0% | |
| TTTGCACGGTCACTTAGATG+TGG | - | chr7.2:16159243-16159262 | MS.gene52658:intron | 45.0% | |
| ! | ACTAGTGCTGCTACAACTCA+AGG | - | chr7.2:16159468-16159487 | MS.gene52658:intron | 45.0% |
| ! | CTAGTGCTGCTACAACTCAA+GGG | - | chr7.2:16159469-16159488 | MS.gene52658:intron | 45.0% |
| ! | GGCCATAAAGCACTCTTTGT+TGG | - | chr7.2:16161608-16161627 | MS.gene52658:CDS | 45.0% |
| ! | GGTTAGGTCGAATGGTGTTA+TGG | - | chr7.2:16161562-16161581 | MS.gene52658:intron | 45.0% |
| ! | GTTTGTAAAAGCGTGGGAGT+CGG | + | chr7.2:16158815-16158834 | None:intergenic | 45.0% |
| !! | ATGATCCTTTAGGGTGGTCA+AGG | - | chr7.2:16161498-16161517 | MS.gene52658:intron | 45.0% |
| !! | TAGGTCGAATGGTGTTATGG+AGG | - | chr7.2:16161565-16161584 | MS.gene52658:intron | 45.0% |
| !! | TGATCCTTTAGGGTGGTCAA+GGG | - | chr7.2:16161499-16161518 | MS.gene52658:intron | 45.0% |
| !!! | TTTATTGATTTATTAAATAT+TGG | - | chr7.2:16160892-16160911 | MS.gene52658:intron | 5.0% |
| ATAGCCGCTGGTCATATGGA+CGG | + | chr7.2:16161082-16161101 | None:intergenic | 50.0% | |
| CCAAGCCCTAACAAGTTGCA+AGG | - | chr7.2:16160186-16160205 | MS.gene52658:intron | 50.0% | |
| CGACCTAACCACAACCATTG+AGG | + | chr7.2:16161552-16161571 | None:intergenic | 50.0% | |
| GCAGGTACTAACAAAGGAGG+AGG | - | chr7.2:16159728-16159747 | MS.gene52658:CDS | 50.0% | |
| GGCAGCAGATCGTATGAAGT+TGG | - | chr7.2:16160676-16160695 | MS.gene52658:intron | 50.0% | |
| GGGACCCCTTCTACAAATTC+AGG | - | chr7.2:16160350-16160369 | MS.gene52658:intron | 50.0% | |
| TCTGATAGCCGCTGGTCATA+TGG | + | chr7.2:16161086-16161105 | None:intergenic | 50.0% | |
| TGACGGGATCGCAAGGATAA+GGG | - | chr7.2:16159975-16159994 | MS.gene52658:CDS | 50.0% | |
| TGGCGAAACCTCAATGGTTG+TGG | - | chr7.2:16161541-16161560 | MS.gene52658:intron | 50.0% | |
| TTCCCTTAGCATCACTGCCA+CGG | + | chr7.2:16158163-16158182 | None:intergenic | 50.0% | |
| TTGACGGGATCGCAAGGATA+AGG | - | chr7.2:16159974-16159993 | MS.gene52658:CDS | 50.0% | |
| ! | TGAGCGTGCTTACTAGCTCT+TGG | + | chr7.2:16158226-16158245 | None:intergenic | 50.0% |
| !! | CCTTGCAACTTGTTAGGGCT+TGG | + | chr7.2:16160189-16160208 | None:intergenic | 50.0% |
| !! | CTTGAGTGGGCTAGTTGTCA+GGG | + | chr7.2:16158394-16158413 | None:intergenic | 50.0% |
| !! | GACCTCGAAGAGCATCAGTT+TGG | - | chr7.2:16161521-16161540 | MS.gene52658:intron | 50.0% |
| !! | GCAAGGATAAGGGTTGATGC+AGG | - | chr7.2:16159985-16160004 | MS.gene52658:CDS | 50.0% |
| !! | GGGTTGATGCAGGTAGAACT+TGG | - | chr7.2:16159995-16160014 | MS.gene52658:CDS | 50.0% |
| ACGAGTTTGACGGGATCGCA+AGG | - | chr7.2:16159968-16159987 | MS.gene52658:CDS | 55.0% | |
| AGGTCCCTTGACCACCCTAA+AGG | + | chr7.2:16161506-16161525 | None:intergenic | 55.0% | |
| ATACAGATCCCTTGCCGGTG+AGG | + | chr7.2:16158958-16158977 | None:intergenic | 55.0% | |
| CAGTAGCCGGTAGTAGCCTA+GGG | + | chr7.2:16161050-16161069 | None:intergenic | 55.0% | |
| CGCCAAACTGATGCTCTTCG+AGG | + | chr7.2:16161526-16161545 | None:intergenic | 55.0% | |
| GCATCCGTCCATATGACCAG+CGG | - | chr7.2:16161075-16161094 | MS.gene52658:intron | 55.0% | |
| GCTTCACCCTAGGCTACTAC+CGG | - | chr7.2:16161041-16161060 | MS.gene52658:intron | 55.0% | |
| GCTTGGTTCCTCACTAGCTC+GGG | + | chr7.2:16160172-16160191 | None:intergenic | 55.0% | |
| ! | GGCTTGGTTCCTCACTAGCT+CGG | + | chr7.2:16160173-16160192 | None:intergenic | 55.0% |
| ! | TGGAAGTGACGGCGCCATTT+TGG | + | chr7.2:16161646-16161665 | None:intergenic | 55.0% |
| !! | GCTTGAGTGGGCTAGTTGTC+AGG | + | chr7.2:16158395-16158414 | None:intergenic | 55.0% |
| !!! | GCTCTTTTCGGTGTCCTCAC+CGG | - | chr7.2:16158941-16158960 | MS.gene52658:intron | 55.0% |
| ACCTGCATTCACCAAGGCCG+TGG | - | chr7.2:16158143-16158162 | MS.gene52658:CDS | 60.0% | |
| ACGGATGCCACAGCAGTAGC+CGG | + | chr7.2:16161063-16161082 | None:intergenic | 60.0% | |
| AGGCCGTGGCAGTGATGCTA+AGG | - | chr7.2:16158157-16158176 | MS.gene52658:CDS | 60.0% | |
| GAAGCGTGTTCTGGCCGACA+TGG | + | chr7.2:16161026-16161045 | None:intergenic | 60.0% | |
| GCAGTAGCCGGTAGTAGCCT+AGG | + | chr7.2:16161051-16161070 | None:intergenic | 60.0% | |
| GCCAGAACACGCTTCACCCT+AGG | - | chr7.2:16161031-16161050 | MS.gene52658:intron | 60.0% | |
| GCCTAGGGTGAAGCGTGTTC+TGG | + | chr7.2:16161035-16161054 | None:intergenic | 60.0% | |
| GGCCGTGGCAGTGATGCTAA+GGG | - | chr7.2:16158158-16158177 | MS.gene52658:CDS | 60.0% | |
| TAGCATCACTGCCACGGCCT+TGG | + | chr7.2:16158157-16158176 | None:intergenic | 60.0% | |
| ! | GCTACTACCGGCTACTGCTG+TGG | - | chr7.2:16161053-16161072 | MS.gene52658:intron | 60.0% |
| !! | TTCGGTGTCCTCACCGGCAA+GGG | - | chr7.2:16158947-16158966 | MS.gene52658:intron | 60.0% |
| !! | TTTCGGTGTCCTCACCGGCA+AGG | - | chr7.2:16158946-16158965 | MS.gene52658:intron | 60.0% |
| GCCACGGCCTTGGTGAATGC+AGG | + | chr7.2:16158147-16158166 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 16158107 | 16161691 | 16158107 | ID=MS.gene52658 |
| chr7.2 | mRNA | 16158107 | 16161691 | 16158107 | ID=MS.gene52658.t1;Parent=MS.gene52658 |
| chr7.2 | exon | 16161566 | 16161691 | 16161566 | ID=MS.gene52658.t1.exon1;Parent=MS.gene52658.t1 |
| chr7.2 | CDS | 16161566 | 16161691 | 16161566 | ID=cds.MS.gene52658.t1;Parent=MS.gene52658.t1 |
| chr7.2 | exon | 16160588 | 16160693 | 16160588 | ID=MS.gene52658.t1.exon2;Parent=MS.gene52658.t1 |
| chr7.2 | CDS | 16160588 | 16160693 | 16160588 | ID=cds.MS.gene52658.t1;Parent=MS.gene52658.t1 |
| chr7.2 | exon | 16159939 | 16160066 | 16159939 | ID=MS.gene52658.t1.exon3;Parent=MS.gene52658.t1 |
| chr7.2 | CDS | 16159939 | 16160066 | 16159939 | ID=cds.MS.gene52658.t1;Parent=MS.gene52658.t1 |
| chr7.2 | exon | 16159591 | 16159864 | 16159591 | ID=MS.gene52658.t1.exon4;Parent=MS.gene52658.t1 |
| chr7.2 | CDS | 16159591 | 16159864 | 16159591 | ID=cds.MS.gene52658.t1;Parent=MS.gene52658.t1 |
| chr7.2 | exon | 16159368 | 16159459 | 16159368 | ID=MS.gene52658.t1.exon5;Parent=MS.gene52658.t1 |
| chr7.2 | CDS | 16159368 | 16159459 | 16159368 | ID=cds.MS.gene52658.t1;Parent=MS.gene52658.t1 |
| chr7.2 | exon | 16158633 | 16158745 | 16158633 | ID=MS.gene52658.t1.exon6;Parent=MS.gene52658.t1 |
| chr7.2 | CDS | 16158633 | 16158745 | 16158633 | ID=cds.MS.gene52658.t1;Parent=MS.gene52658.t1 |
| chr7.2 | exon | 16158107 | 16158332 | 16158107 | ID=MS.gene52658.t1.exon7;Parent=MS.gene52658.t1 |
| chr7.2 | CDS | 16158107 | 16158332 | 16158107 | ID=cds.MS.gene52658.t1;Parent=MS.gene52658.t1 |
| Gene Sequence |
| Protein sequence |
