AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52674

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52674.t1 MTR_7g093430 95.254 295 12 1 1 293 1 295 0.0 543
MS.gene52674.t1 MTR_1g054285 68.841 276 76 7 1 273 1 269 1.21e-115 335
MS.gene52674.t1 MTR_2g061030 80.263 152 20 2 135 283 181 325 2.26e-77 239
MS.gene52674.t1 MTR_4g100550 64.921 191 49 3 87 272 58 235 8.98e-74 228
MS.gene52674.t1 MTR_5g013010 62.887 194 64 4 87 279 72 258 2.41e-70 219
MS.gene52674.t1 MTR_4g097600 77.600 125 26 1 148 270 115 239 1.72e-65 206
MS.gene52674.t1 MTR_5g014890 67.626 139 45 0 149 287 114 252 1.56e-64 204
MS.gene52674.t1 MTR_8g006705 66.279 172 45 3 108 269 90 258 1.59e-64 205
MS.gene52674.t1 MTR_1g017090 62.590 139 50 1 157 293 129 267 1.59e-55 181
MS.gene52674.t1 MTR_4g084750 65.323 124 36 2 153 269 59 182 2.96e-48 159
MS.gene52674.t1 MTR_3g103590 67.939 131 40 2 149 278 136 265 8.16e-48 162
MS.gene52674.t1 MTR_2g038625 56.618 136 55 2 136 270 63 195 2.65e-40 140
MS.gene52674.t1 MTR_2g038580 56.618 136 55 2 136 270 63 195 2.65e-40 140
MS.gene52674.t1 MTR_4g126900 58.772 114 43 1 160 269 90 203 1.26e-35 127
MS.gene52674.t1 MTR_5g013010 56.098 123 47 3 87 209 72 187 6.55e-30 112
MS.gene52674.t1 MTR_6g007647 40.146 137 80 1 155 291 30 164 1.65e-19 85.9
MS.gene52674.t1 MTR_7g010020 44.737 114 59 1 139 248 61 174 1.78e-19 86.3
MS.gene52674.t1 MTR_1g061660 44.330 97 54 0 154 250 55 151 2.52e-19 85.1
MS.gene52674.t1 MTR_6g007647 40.146 137 80 1 155 291 64 198 3.89e-19 85.5
MS.gene52674.t1 MTR_5g039000 45.283 106 54 1 150 251 69 174 2.57e-18 83.2
MS.gene52674.t1 MTR_8g468210 41.085 129 69 3 130 251 46 174 5.09e-18 82.4
MS.gene52674.t1 MTR_4g107650 48.077 104 52 1 144 245 79 182 5.16e-18 83.2
MS.gene52674.t1 MTR_6g011610 39.726 146 77 3 110 244 44 189 2.47e-17 80.5
MS.gene52674.t1 MTR_5g038280 47.872 94 42 1 158 244 87 180 4.18e-17 80.5
MS.gene52674.t1 MTR_7g103340 41.935 93 54 0 153 245 58 150 5.76e-17 78.6
MS.gene52674.t1 MTR_6g011610 45.946 111 51 2 143 244 60 170 8.24e-17 78.6
MS.gene52674.t1 MTR_3g080100 45.283 106 49 2 149 245 9 114 1.45e-16 77.0
MS.gene52674.t1 MTR_3g080100 45.283 106 49 2 149 245 48 153 2.17e-16 77.4
MS.gene52674.t1 MTR_8g469430 45.745 94 44 1 158 244 89 182 4.89e-16 77.0
MS.gene52674.t1 MTR_8g089895 43.750 112 53 2 141 245 40 148 2.34e-15 75.5
MS.gene52674.t1 MTR_3g086790 35.294 170 89 4 119 279 33 190 5.09e-15 74.3
MS.gene52674.t1 MTR_8g026960 42.683 82 47 0 162 243 38 119 5.51e-12 64.7
MS.gene52674.t1 MTR_3g092150 41.935 93 47 1 161 246 41 133 7.35e-12 64.3
MS.gene52674.t1 MTR_5g029320 30.769 130 89 1 125 254 60 188 3.58e-11 63.9
MS.gene52674.t1 MTR_2g101720 35.246 122 60 1 161 282 145 247 8.73e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52674.t1 AT5G06710 51.402 321 92 9 1 273 1 305 8.81e-87 263
MS.gene52674.t1 AT5G47370 55.652 230 85 7 52 271 22 244 5.79e-70 218
MS.gene52674.t1 AT4G37790 81.967 122 22 0 149 270 117 238 3.61e-69 216
MS.gene52674.t1 AT2G44910 49.237 262 98 7 46 272 17 278 1.74e-67 213
MS.gene52674.t1 AT3G60390 58.333 204 58 4 87 269 77 274 6.31e-67 211
MS.gene52674.t1 AT2G22800 77.049 122 28 0 149 270 104 225 3.62e-65 206
MS.gene52674.t1 AT4G16780 62.857 175 57 3 106 272 70 244 3.98e-65 206
MS.gene52674.t1 AT4G17460 54.852 237 82 9 52 271 21 249 9.22e-64 202
MS.gene52674.t1 AT2G01430 61.029 136 51 2 135 270 116 249 1.37e-47 160
MS.gene52674.t1 AT5G06710 42.412 257 84 9 1 209 1 241 1.16e-39 140
MS.gene52674.t1 AT1G70920 58.015 131 46 2 142 270 51 174 1.29e-39 137
MS.gene52674.t1 AT1G70920 58.015 131 46 2 142 270 21 144 1.41e-39 137
MS.gene52674.t1 AT2G01430 62.667 75 28 0 135 209 116 190 1.51e-23 95.9
MS.gene52674.t1 AT5G06710 36.087 230 83 10 1 182 1 214 1.45e-18 83.2
MS.gene52674.t1 AT5G06710 36.087 230 83 10 1 182 1 214 1.45e-18 83.2
MS.gene52674.t1 AT1G26960 39.744 156 81 5 143 291 57 206 2.28e-18 82.8
MS.gene52674.t1 AT1G69780 45.872 109 56 2 140 245 64 172 4.04e-18 82.8
MS.gene52674.t1 AT2G36610 42.157 102 51 1 153 246 66 167 3.75e-17 78.2
MS.gene52674.t1 AT5G03790 39.823 113 67 1 153 264 72 184 3.96e-17 79.3
MS.gene52674.t1 AT3G01220 42.857 119 56 2 144 250 65 183 6.24e-17 79.3
MS.gene52674.t1 AT5G15150 45.000 120 55 4 136 247 92 208 1.63e-16 78.6
MS.gene52674.t1 AT3G01470 46.739 92 49 0 158 249 68 159 7.71e-16 76.3
MS.gene52674.t1 AT2G22430 45.455 99 50 1 154 248 58 156 4.64e-15 74.7
MS.gene52674.t1 AT5G65310 42.857 98 49 1 155 245 69 166 5.84e-15 74.3
MS.gene52674.t1 AT5G65310 42.857 98 49 1 155 245 51 148 6.22e-15 73.9
MS.gene52674.t1 AT1G27045 56.061 66 29 0 158 223 17 82 1.75e-14 70.5
MS.gene52674.t1 AT1G27045 56.061 66 29 0 158 223 25 90 1.80e-14 70.9
MS.gene52674.t1 AT1G27045 56.061 66 29 0 158 223 25 90 1.80e-14 70.9
MS.gene52674.t1 AT1G27045 56.061 66 29 0 158 223 68 133 2.49e-14 71.2
MS.gene52674.t1 AT1G27045 45.098 102 48 2 158 252 68 168 3.24e-14 71.2
MS.gene52674.t1 AT2G18550 45.361 97 52 1 148 244 52 147 5.07e-14 70.1
MS.gene52674.t1 AT4G40060 42.857 98 52 1 154 247 55 152 5.74e-14 71.2
MS.gene52674.t1 AT5G03790 42.045 88 51 0 153 240 72 159 1.05e-13 68.9
MS.gene52674.t1 AT2G46680 41.758 91 53 0 153 243 27 117 1.10e-13 69.7
MS.gene52674.t1 AT2G46680 41.758 91 53 0 153 243 27 117 1.25e-13 69.7
MS.gene52674.t1 AT4G36740 41.837 98 56 1 147 244 46 142 4.39e-12 64.7
MS.gene52674.t1 AT4G36740 41.837 98 56 1 147 244 45 141 4.72e-12 64.7
MS.gene52674.t1 AT3G61890 42.169 83 48 0 161 243 33 115 1.52e-11 63.5

Find 79 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCACGACTACTGTTTC+TGG 0.182434 7.2:+15982082 None:intergenic
CTTCGAATTCCCTGGCTTAA+TGG 0.240731 7.2:-15982382 MS.gene52674:CDS
ACTAGCGATGATGAAGAAAA+TGG 0.264544 7.2:-15982044 MS.gene52674:CDS
AATATGACGCTGCACTATTC+GGG 0.319466 7.2:+15982150 None:intergenic
CTCTAACAGAAGAAAATAAA+AGG 0.327202 7.2:-15980634 MS.gene52674:CDS
TAATATGACGCTGCACTATT+CGG 0.334434 7.2:+15982149 None:intergenic
CCACTGACGCCAACCGGAAT+TGG 0.348785 7.2:+15982207 None:intergenic
GAAGAAACTCAGACTCTCTA+AGG 0.373372 7.2:-15982012 MS.gene52674:CDS
TTGTTTAGTGGCAGTGGTTC+CGG 0.381277 7.2:+15980493 None:intergenic
CTCCACTTCTTCGAATTCCC+TGG 0.385540 7.2:-15982390 MS.gene52674:CDS
CACTTCCGTTTGCTTTAACT+TGG 0.385691 7.2:+15980688 None:intergenic
GTCCACGTCAAGTAGAAGTT+TGG 0.395922 7.2:-15980887 MS.gene52674:CDS
AATCGAGATGGTTTGTTTAG+TGG 0.400673 7.2:+15980481 None:intergenic
TCATTATTGGCGGTGCCCAC+CGG 0.402169 7.2:+15980454 None:intergenic
TATCGGACGTGAACCAATTC+CGG 0.402811 7.2:-15982220 MS.gene52674:CDS
ATGGAGCTGGCTTTGAGCTT+AGG 0.426776 7.2:-15982595 MS.gene52674:CDS
CTATGTGTCCTTCTTGTGAA+AGG 0.437758 7.2:-15980532 MS.gene52674:CDS
GGCTGCAGTTGGTGTGGAAC+CGG 0.440222 7.2:-15982249 MS.gene52674:intron
CCAATTCCGGTTGGCGTCAG+TGG 0.447214 7.2:-15982207 MS.gene52674:CDS
TATCCTCCACTGACGCCAAC+CGG 0.456571 7.2:+15982201 None:intergenic
TGTGGAACCGGCGAGGGTAT+CGG 0.464515 7.2:-15982237 MS.gene52674:CDS
AGAAAATAAAAGGTTACAAA+AGG 0.465210 7.2:-15980624 MS.gene52674:CDS
GATGGTTTGTTTAGTGGCAG+TGG 0.466617 7.2:+15980487 None:intergenic
AGTTCAATCACCGATGGAGC+TGG 0.469281 7.2:-15982608 None:intergenic
TTCGAAGAAGTGGAGAAGGC+TGG 0.476464 7.2:+15982398 None:intergenic
GTGGAGAAGGCTGGGAGTGA+AGG 0.477756 7.2:+15982407 None:intergenic
CACATAGTGAGAGTGGTAGC+TGG 0.479169 7.2:+15980548 None:intergenic
CAGAAACAGTAGTCGTGAAG+AGG 0.481552 7.2:-15982081 MS.gene52674:CDS
GAGTGAAGGACCGGTGTTGA+AGG 0.484612 7.2:+15982421 None:intergenic
GGCAGTGGTTCCGGTGGTGT+TGG 0.486933 7.2:+15980502 None:intergenic
TTTACTTGCACCATTAAGCC+AGG 0.488537 7.2:+15982372 None:intergenic
GGAAGAAGATTGAGCTGAAT+GGG 0.496713 7.2:+15982442 None:intergenic
TGAAACTGCAGCTCCCTCTT+CGG 0.499081 7.2:+15982175 None:intergenic
CAAGTTAAAGCAAACGGAAG+TGG 0.499846 7.2:-15980687 MS.gene52674:CDS
AGTGGTTCCGGTGGTGTTGG+TGG 0.508654 7.2:+15980505 None:intergenic
CTAGCGATGATGAAGAAAAT+GGG 0.520663 7.2:-15982043 MS.gene52674:CDS
GTTAAACCATGTTCTTCAAG+TGG 0.524683 7.2:+15982505 None:intergenic
AGGAAGAAGATTGAGCTGAA+TGG 0.527689 7.2:+15982441 None:intergenic
CAGGACCAAGTTAAAGCAAA+CGG 0.533115 7.2:-15980693 MS.gene52674:CDS
TATGTGTCCTTCTTGTGAAA+GGG 0.534150 7.2:-15980531 MS.gene52674:CDS
CAATCTTCTTCCTTCAACAC+CGG 0.539071 7.2:-15982431 MS.gene52674:CDS
GCAGAAACAGAAACTTGCTC+TGG 0.539316 7.2:-15980928 MS.gene52674:intron
AGAACCGTTGTCATTATTGG+CGG 0.539567 7.2:+15980444 None:intergenic
AAGCTCAAAGCCAGCTCCAT+CGG 0.539731 7.2:+15982598 None:intergenic
TCGAAGAAGTGGAGAAGGCT+GGG 0.542272 7.2:+15982399 None:intergenic
AGCCAGGGAATTCGAAGAAG+TGG 0.543327 7.2:+15982388 None:intergenic
GAAGGCTGGGAGTGAAGGAC+CGG 0.549545 7.2:+15982412 None:intergenic
GTTTATGGCTGCAGTTGGTG+TGG 0.550809 7.2:-15982255 MS.gene52674:intron
GTGGCGACCCTTTCACAAGA+AGG 0.556254 7.2:+15980524 None:intergenic
AGAAACAGTAGTCGTGAAGA+GGG 0.560398 7.2:-15982080 MS.gene52674:CDS
CAGTAGTCGTGAAGAGGGTG+CGG 0.564654 7.2:-15982075 MS.gene52674:CDS
TATTATTACAGGATTGAGAG+TGG 0.576136 7.2:+15981950 None:intergenic
TTCACGTCCGATACCCTCGC+CGG 0.580525 7.2:+15982230 None:intergenic
CCCACCGGTGGTAATCGAGA+TGG 0.582759 7.2:+15980469 None:intergenic
GAGTCTGAGTTTCTTCCGTG+TGG 0.583581 7.2:+15982019 None:intergenic
AGGGTCGCCACCAACACCAC+CGG 0.588362 7.2:-15980512 MS.gene52674:CDS
ATTCCGGTTGGCGTCAGTGG+AGG 0.590366 7.2:-15982204 MS.gene52674:CDS
TGCATACCACTTGAAGAACA+TGG 0.591621 7.2:-15982511 MS.gene52674:CDS
GCTGGAAGTTGCATGTAGAA+TGG 0.591856 7.2:+15980566 None:intergenic
ACCATCTCGATTACCACCGG+TGG 0.592762 7.2:-15980470 MS.gene52674:CDS
GGAATTCGAAGAAGTGGAGA+AGG 0.592815 7.2:+15982394 None:intergenic
AGAAGATTGAGCTGAATGGG+TGG 0.595515 7.2:+15982445 None:intergenic
AGAAGGACACATAGTGAGAG+TGG 0.600200 7.2:+15980541 None:intergenic
TGCAGCGTCATATTATCAGA+TGG 0.603249 7.2:-15982141 MS.gene52674:CDS
AACCAAACTTCTACTTGACG+TGG 0.605331 7.2:+15980885 None:intergenic
TTATTGGCGGTGCCCACCGG+TGG 0.607951 7.2:+15980457 None:intergenic
AGTTGGTGTGGAACCGGCGA+GGG 0.608228 7.2:-15982243 MS.gene52674:CDS
GGTTTCAGAATAGAAGAGCA+AGG 0.612001 7.2:-15980866 MS.gene52674:intron
CAGTTGGTGTGGAACCGGCG+AGG 0.613503 7.2:-15982244 MS.gene52674:CDS
GAGCTGAATGGGTGGATCTG+AGG 0.625502 7.2:+15982453 None:intergenic
GGACGTGAACCAATTCCGGT+TGG 0.633044 7.2:-15982216 MS.gene52674:CDS
ATATGACGCTGCACTATTCG+GGG 0.636746 7.2:+15982151 None:intergenic
CCATCTCGATTACCACCGGT+GGG 0.643789 7.2:-15980469 MS.gene52674:CDS
CAAACCATCTCGATTACCAC+CGG 0.647502 7.2:-15980473 MS.gene52674:CDS
ATGAAGAAAATGGGTCCACA+CGG 0.648350 7.2:-15982034 MS.gene52674:CDS
GTGGAGGATACTACCGAAGA+GGG 0.653723 7.2:-15982188 MS.gene52674:CDS
TTTAGTGGCAGTGGTTCCGG+TGG 0.663174 7.2:+15980496 None:intergenic
AGTGGAGGATACTACCGAAG+AGG 0.669703 7.2:-15982189 MS.gene52674:CDS
TTACTTGCACCATTAAGCCA+GGG 0.674390 7.2:+15982373 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTATAATTACTAAAAAAT+AGG + chr7.2:15980767-15980786 None:intergenic 10.0%
!! ACATATTAAAAAAAATGTAT+AGG + chr7.2:15981262-15981281 None:intergenic 10.0%
!! GAAATAAACAAAATAAATAT+TGG + chr7.2:15982268-15982287 None:intergenic 10.0%
!!! ATGTTTTTCATTTTTTTATT+AGG + chr7.2:15982333-15982352 None:intergenic 10.0%
!!! TAACAATATTTTTTTTTTGA+AGG + chr7.2:15982065-15982084 None:intergenic 10.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr7.2:15981951-15981970 MS.gene52674:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr7.2:15981970-15981951 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr7.2:15981952-15981971 MS.gene52674:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr7.2:15981971-15981952 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr7.2:15981730-15981749 None:intergenic 15.0%
!! TACTTATATGTTTATGTTTA+TGG - chr7.2:15980782-15980801 MS.gene52674:intron 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr7.2:15981861-15981880 MS.gene52674:intron 15.0%
!!! ATTTTTATTATGCAATACAT+GGG - chr7.2:15981343-15981362 MS.gene52674:intron 15.0%
!!! TATTTTATGCTATAGATATT+TGG - chr7.2:15981171-15981190 MS.gene52674:intron 15.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr7.2:15981600-15981619 None:intergenic 20.0%
!! AAATAAATACGAGAAAAAAG+AGG + chr7.2:15980709-15980728 None:intergenic 20.0%
!! AAATGAAAAACATAATGTAC+AGG - chr7.2:15982340-15982359 MS.gene52674:intron 20.0%
!! AATAAATACGAGAAAAAAGA+GGG + chr7.2:15980708-15980727 None:intergenic 20.0%
!! AGAAAATAAAAGGTTACAAA+AGG - chr7.2:15982428-15982447 MS.gene52674:CDS 20.0%
!! ATAAGCAGCAATATATATAA+GGG + chr7.2:15982026-15982045 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr7.2:15981601-15981620 None:intergenic 20.0%
!! TATAAGCAGCAATATATATA+AGG + chr7.2:15982027-15982046 None:intergenic 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG + chr7.2:15981695-15981714 None:intergenic 20.0%
!!! GATTTTTATTATGCAATACA+TGG - chr7.2:15981342-15981361 MS.gene52674:intron 20.0%
!!! TTACTTCATTCTTTTTATCA+TGG - chr7.2:15981464-15981483 MS.gene52674:intron 20.0%
!!! TTTTTATTATGCAATACATG+GGG - chr7.2:15981344-15981363 MS.gene52674:intron 20.0%
! AGAAAATGGGATGAAATTAA+AGG + chr7.2:15981375-15981394 None:intergenic 25.0%
! AGATATTTGGACAAATAGAA+TGG - chr7.2:15981184-15981203 MS.gene52674:intron 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr7.2:15981567-15981586 None:intergenic 25.0%
! CTCTAACAGAAGAAAATAAA+AGG - chr7.2:15982418-15982437 MS.gene52674:CDS 25.0%
! TGTTAGAGAGTTATTATTAC+AGG + chr7.2:15981116-15981135 None:intergenic 25.0%
!! ATCCCATTTTCTCAAATTTT+AGG - chr7.2:15981383-15981402 MS.gene52674:intron 25.0%
!! ATGGATTTTTCTATCATGAA+TGG - chr7.2:15980930-15980949 MS.gene52674:intron 25.0%
!! ATTATCTTTTCTGTGTTATG+AGG - chr7.2:15982222-15982241 MS.gene52674:CDS 25.0%
!! TCAAACAAAGAGAATGTTTT+CGG + chr7.2:15980490-15980509 None:intergenic 25.0%
!! TCCCATTTTCTCAAATTTTA+GGG - chr7.2:15981384-15981403 MS.gene52674:intron 25.0%
!! TTTTCTATCATGAATGGTAA+TGG - chr7.2:15980936-15980955 MS.gene52674:intron 25.0%
!! TTTTGTTGGGTAATTTTGTA+GGG + chr7.2:15980516-15980535 None:intergenic 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr7.2:15981890-15981909 MS.gene52674:intron 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr7.2:15981889-15981908 MS.gene52674:intron 25.0%
CAAGATTAGAACACTATGAA+AGG + chr7.2:15981827-15981846 None:intergenic 30.0%
CAGTGCAGAAAAACAAAATT+AGG + chr7.2:15981568-15981587 None:intergenic 30.0%
CCCCTAAAATTTGAGAAAAT+GGG + chr7.2:15981388-15981407 None:intergenic 30.0%
TATTATTACAGGATTGAGAG+TGG + chr7.2:15981105-15981124 None:intergenic 30.0%
TCCCCTAAAATTTGAGAAAA+TGG + chr7.2:15981389-15981408 None:intergenic 30.0%
! CCCATTTTCTCAAATTTTAG+GGG - chr7.2:15981385-15981404 MS.gene52674:intron 30.0%
!! AAATTTTAGGGGAAGAACAT+TGG - chr7.2:15981396-15981415 MS.gene52674:intron 30.0%
!! GTTTTGTTGGGTAATTTTGT+AGG + chr7.2:15980517-15980536 None:intergenic 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr7.2:15981983-15982002 MS.gene52674:CDS 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr7.2:15982002-15981983 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr7.2:15981982-15982001 MS.gene52674:CDS 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr7.2:15982001-15981982 None:intergenic 30.0%
!!! GGAATCACTTTTTTGGTTTA+AGG + chr7.2:15980581-15980600 None:intergenic 30.0%
!!! GTTGAATTATTTTGAGACAG+AGG - chr7.2:15981298-15981317 MS.gene52674:intron 30.0%
AAGTAGGGACTAAACTTACA+AGG - chr7.2:15981967-15981986 MS.gene52674:CDS 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr7.2:15981986-15981967 None:intergenic 35.0%
ACTAGCGATGATGAAGAAAA+TGG - chr7.2:15981008-15981027 MS.gene52674:intron 35.0%
ATAGAAGAGCAAGGTAACTA+AGG - chr7.2:15982195-15982214 MS.gene52674:CDS 35.0%
CTAGCGATGATGAAGAAAAT+GGG - chr7.2:15981009-15981028 MS.gene52674:intron 35.0%
GTTAAACCATGTTCTTCAAG+TGG + chr7.2:15980550-15980569 None:intergenic 35.0%
TAATATGACGCTGCACTATT+CGG + chr7.2:15980906-15980925 None:intergenic 35.0%
TAGAAGAGCAAGGTAACTAA+GGG - chr7.2:15982196-15982215 MS.gene52674:CDS 35.0%
TATGTGTCCTTCTTGTGAAA+GGG - chr7.2:15982521-15982540 MS.gene52674:CDS 35.0%
TTTATGTTTATGGCTGCAGT+TGG - chr7.2:15980792-15980811 MS.gene52674:intron 35.0%
!! AATCGAGATGGTTTGTTTAG+TGG + chr7.2:15982574-15982593 None:intergenic 35.0%
!! TGGTATGCAGAAAGTTTTGT+TGG + chr7.2:15980530-15980549 None:intergenic 35.0%
!!! GATCTGAGGAATCACTTTTT+TGG + chr7.2:15980588-15980607 None:intergenic 35.0%
!!! GGTATGCAGAAAGTTTTGTT+GGG + chr7.2:15980529-15980548 None:intergenic 35.0%
!!! GTTTCTGTTTCTGCAGATTT+TGG + chr7.2:15982118-15982137 None:intergenic 35.0%
AACCAAACTTCTACTTGACG+TGG + chr7.2:15982170-15982189 None:intergenic 40.0%
AATATGACGCTGCACTATTC+GGG + chr7.2:15980905-15980924 None:intergenic 40.0%
AGAAACAGTAGTCGTGAAGA+GGG - chr7.2:15980972-15980991 MS.gene52674:intron 40.0%
AGGAAGAAGATTGAGCTGAA+TGG + chr7.2:15980614-15980633 None:intergenic 40.0%
ATGAAGAAAATGGGTCCACA+CGG - chr7.2:15981018-15981037 MS.gene52674:intron 40.0%
CAAGTTAAAGCAAACGGAAG+TGG - chr7.2:15982365-15982384 MS.gene52674:intron 40.0%
CAATCTTCTTCCTTCAACAC+CGG - chr7.2:15980621-15980640 MS.gene52674:CDS 40.0%
CACTTCCGTTTGCTTTAACT+TGG + chr7.2:15982367-15982386 None:intergenic 40.0%
CAGGACCAAGTTAAAGCAAA+CGG - chr7.2:15982359-15982378 MS.gene52674:intron 40.0%
CTATGTGTCCTTCTTGTGAA+AGG - chr7.2:15982520-15982539 MS.gene52674:CDS 40.0%
GAAGAAACTCAGACTCTCTA+AGG - chr7.2:15981040-15981059 MS.gene52674:intron 40.0%
GGAAGAAGATTGAGCTGAAT+GGG + chr7.2:15980613-15980632 None:intergenic 40.0%
GGTTTCAGAATAGAAGAGCA+AGG - chr7.2:15982186-15982205 MS.gene52674:CDS 40.0%
TGCAGCGTCATATTATCAGA+TGG - chr7.2:15980911-15980930 MS.gene52674:CDS 40.0%
TGCATACCACTTGAAGAACA+TGG - chr7.2:15980541-15980560 MS.gene52674:CDS 40.0%
TTACTTGCACCATTAAGCCA+GGG + chr7.2:15980682-15980701 None:intergenic 40.0%
TTTACTTGCACCATTAAGCC+AGG + chr7.2:15980683-15980702 None:intergenic 40.0%
AGAAGATTGAGCTGAATGGG+TGG + chr7.2:15980610-15980629 None:intergenic 45.0%
AGAAGGACACATAGTGAGAG+TGG + chr7.2:15982514-15982533 None:intergenic 45.0%
ATATGACGCTGCACTATTCG+GGG + chr7.2:15980904-15980923 None:intergenic 45.0%
CAAACCATCTCGATTACCAC+CGG - chr7.2:15982579-15982598 MS.gene52674:CDS 45.0%
CAGAAACAGTAGTCGTGAAG+AGG - chr7.2:15980971-15980990 MS.gene52674:intron 45.0%
CTCTTCACGACTACTGTTTC+TGG + chr7.2:15980973-15980992 None:intergenic 45.0%
CTTCGAATTCCCTGGCTTAA+TGG - chr7.2:15980670-15980689 MS.gene52674:CDS 45.0%
GCTGGAAGTTGCATGTAGAA+TGG + chr7.2:15982489-15982508 None:intergenic 45.0%
GGAATTCGAAGAAGTGGAGA+AGG + chr7.2:15980661-15980680 None:intergenic 45.0%
GTCCACGTCAAGTAGAAGTT+TGG - chr7.2:15982165-15982184 MS.gene52674:CDS 45.0%
TATCGGACGTGAACCAATTC+CGG - chr7.2:15980832-15980851 MS.gene52674:intron 45.0%
TTGTTTAGTGGCAGTGGTTC+CGG + chr7.2:15982562-15982581 None:intergenic 45.0%
! GCAGAAACAGAAACTTGCTC+TGG - chr7.2:15982124-15982143 MS.gene52674:CDS 45.0%
!! GATGGTTTGTTTAGTGGCAG+TGG + chr7.2:15982568-15982587 None:intergenic 45.0%
!!! AAAAAAAATATTGTTATTTT+TGG - chr7.2:15982069-15982088 MS.gene52674:CDS 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG - chr7.2:15981922-15981941 MS.gene52674:intron 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG - chr7.2:15981923-15981942 MS.gene52674:intron 5.0%
AGCCAGGGAATTCGAAGAAG+TGG + chr7.2:15980667-15980686 None:intergenic 50.0%
AGTGGAGGATACTACCGAAG+AGG - chr7.2:15980863-15980882 MS.gene52674:intron 50.0%
CACATAGTGAGAGTGGTAGC+TGG + chr7.2:15982507-15982526 None:intergenic 50.0%
CTCCACTTCTTCGAATTCCC+TGG - chr7.2:15980662-15980681 MS.gene52674:CDS 50.0%
GAGTCTGAGTTTCTTCCGTG+TGG + chr7.2:15981036-15981055 None:intergenic 50.0%
GTGGAGGATACTACCGAAGA+GGG - chr7.2:15980864-15980883 MS.gene52674:intron 50.0%
TCGAAGAAGTGGAGAAGGCT+GGG + chr7.2:15980656-15980675 None:intergenic 50.0%
TGAAACTGCAGCTCCCTCTT+CGG + chr7.2:15980880-15980899 None:intergenic 50.0%
TTCGAAGAAGTGGAGAAGGC+TGG + chr7.2:15980657-15980676 None:intergenic 50.0%
! GTTTATGGCTGCAGTTGGTG+TGG - chr7.2:15980797-15980816 MS.gene52674:intron 50.0%
!! ATGGAGCTGGCTTTGAGCTT+AGG - chr7.2:15980457-15980476 MS.gene52674:CDS 50.0%
ACCATCTCGATTACCACCGG+TGG - chr7.2:15982582-15982601 MS.gene52674:CDS 55.0%
CAGTAGTCGTGAAGAGGGTG+CGG - chr7.2:15980977-15980996 MS.gene52674:intron 55.0%
CCATCTCGATTACCACCGGT+GGG - chr7.2:15982583-15982602 MS.gene52674:CDS 55.0%
GAGCTGAATGGGTGGATCTG+AGG + chr7.2:15980602-15980621 None:intergenic 55.0%
GGACGTGAACCAATTCCGGT+TGG - chr7.2:15980836-15980855 MS.gene52674:intron 55.0%
GTGGCGACCCTTTCACAAGA+AGG + chr7.2:15982531-15982550 None:intergenic 55.0%
TATCCTCCACTGACGCCAAC+CGG + chr7.2:15980854-15980873 None:intergenic 55.0%
TTTAGTGGCAGTGGTTCCGG+TGG + chr7.2:15982559-15982578 None:intergenic 55.0%
! GAGTGAAGGACCGGTGTTGA+AGG + chr7.2:15980634-15980653 None:intergenic 55.0%
ATTCCGGTTGGCGTCAGTGG+AGG - chr7.2:15980848-15980867 MS.gene52674:intron 60.0%
CCAATTCCGGTTGGCGTCAG+TGG - chr7.2:15980845-15980864 MS.gene52674:intron 60.0%
CCACTGACGCCAACCGGAAT+TGG + chr7.2:15980848-15980867 None:intergenic 60.0%
CCCACCGGTGGTAATCGAGA+TGG + chr7.2:15982586-15982605 None:intergenic 60.0%
GAAGGCTGGGAGTGAAGGAC+CGG + chr7.2:15980643-15980662 None:intergenic 60.0%
GTGGAGAAGGCTGGGAGTGA+AGG + chr7.2:15980648-15980667 None:intergenic 60.0%
TTCACGTCCGATACCCTCGC+CGG + chr7.2:15980825-15980844 None:intergenic 60.0%
! AGTGGTTCCGGTGGTGTTGG+TGG + chr7.2:15982550-15982569 None:intergenic 60.0%
! AGTTGGTGTGGAACCGGCGA+GGG - chr7.2:15980809-15980828 MS.gene52674:intron 60.0%
! GGCTGCAGTTGGTGTGGAAC+CGG - chr7.2:15980803-15980822 MS.gene52674:intron 60.0%
! TGTGGAACCGGCGAGGGTAT+CGG - chr7.2:15980815-15980834 MS.gene52674:intron 60.0%
AGGGTCGCCACCAACACCAC+CGG - chr7.2:15982540-15982559 MS.gene52674:CDS 65.0%
GGCAGTGGTTCCGGTGGTGT+TGG + chr7.2:15982553-15982572 None:intergenic 65.0%
TTATTGGCGGTGCCCACCGG+TGG + chr7.2:15982598-15982617 None:intergenic 65.0%
! CAGTTGGTGTGGAACCGGCG+AGG - chr7.2:15980808-15980827 MS.gene52674:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 15980457 15982617 15980457 ID=MS.gene52674
chr7.2 mRNA 15980457 15982617 15980457 ID=MS.gene52674.t1;Parent=MS.gene52674
chr7.2 exon 15982377 15982617 15982377 ID=MS.gene52674.t1.exon1;Parent=MS.gene52674.t1
chr7.2 CDS 15982377 15982617 15982377 ID=cds.MS.gene52674.t1;Parent=MS.gene52674.t1
chr7.2 exon 15981959 15982263 15981959 ID=MS.gene52674.t1.exon2;Parent=MS.gene52674.t1
chr7.2 CDS 15981959 15982263 15981959 ID=cds.MS.gene52674.t1;Parent=MS.gene52674.t1
chr7.2 exon 15980867 15980946 15980867 ID=MS.gene52674.t1.exon3;Parent=MS.gene52674.t1
chr7.2 CDS 15980867 15980946 15980867 ID=cds.MS.gene52674.t1;Parent=MS.gene52674.t1
chr7.2 exon 15980457 15980712 15980457 ID=MS.gene52674.t1.exon4;Parent=MS.gene52674.t1
chr7.2 CDS 15980457 15980712 15980457 ID=cds.MS.gene52674.t1;Parent=MS.gene52674.t1
Gene Sequence

>MS.gene52674

ATGGAGCTGGCTTTGAGCTTAGGCGACACACCGAAAACATTCTCTTTGTTTGAAAACCCTACAAAATTACCCAACAAAACTTTCTGCATACCACTTGAAGAACATGGTTTAACTGAAAAATCCTTAAACCAAAAAAGTGATTCCTCAGATCCACCCATTCAGCTCAATCTTCTTCCTTCAACACCGGTCCTTCACTCCCAGCCTTCTCCACTTCTTCGAATTCCCTGGCTTAATGGTGCAAGTAAACACCCTCTTTTTTCTCGTATTTATTTTTTATAGACATATGTAAATTATAATTTTTTCGACGCCTATTTTTTAGTAATTATACTTATATGTTTATGTTTATGGCTGCAGTTGGTGTGGAACCGGCGAGGGTATCGGACGTGAACCAATTCCGGTTGGCGTCAGTGGAGGATACTACCGAAGAGGGAGCTGCAGTTTCATCCCCGAATAGTGCAGCGTCATATTATCAGATGGATTTTTCTATCATGAATGGTAATGGAGATGCTGCAGCCAGAAACAGTAGTCGTGAAGAGGGTGCGGATAGAAATACTAGCGATGATGAAGAAAATGGGTCCACACGGAAGAAACTCAGACTCTCTAAGGAACAATCAGCTTTTCTTGAAGATAGCTTCAAAGAACACACCACTCTCAATCCTGTAATAATAACTCTCTAACAATATTTCATTTGTTTCACTTTCTCTTTCTCTTTCTTATTTTATGCTATAGATATTTGGACAAATAGAATGGAAAAAAAAAATATTGACAAGTACATTGAAAACTATTTTTCTCTTTTTTTTTACCTATACATTTTTTTTAATATGTGTAAAATTAACAAAATGTTGAATTATTTTGAGACAGAGGAATATCATTTTATTAGTTAAAGATTTTTATTATGCAATACATGGGGAAAAACCTTTAATTTCATCCCATTTTCTCAAATTTTAGGGGAAGAACATTGGAATGATATATATCTATAAAAAAAATTATATAGAAGAACTATAAGTTTACTTCATTCTTTTTATCATGGTTAATTATGTTTCTAATCCCTATAAAATAGCGACCTTGTAAGTTTAGTCCCTACTTAATTTTAATAGCATTTTTAGTCCCTAATTTTGTTTTTCTGCACTGAGTATTAGTCCCTACTCAATTCAAATTTGTTTAATTTATGCTTAAACTCTTAAATTTTTGAACAATTTTTTGCAGACATGTTTAGAATATTACTAAAAGTTCGTCCGCAAAAAATTATCGCAAAATTTGATTTCTACATCCAGATTTTATTACTTTTTATCTTTAACTTTTGTCGTTTTAAAAAATTCATATTTAATTCATTTCATGTCAGAAAATTCTAAATTTTAGTAAACGAACCTTTCATAGTGTTCTAATCTTGTTTCAAAAAAATCGTTCAAAAATTTAAGAGTTTAAGGATAATTAATCAAACTTTGTTTTAGCAGGGACTAAAATTATAAGTAAATTTTTTTTTATAGGGACTAAAAATGCTATTAAAATTAAGTAGGGACTAAACTTACAAGGTCGCTATTTTATAGGGACTAGAAACATAATTAACCCTTATATATATTGCTGCTTATAAATATTGTTATTTTTCCTTCAAAAAAAAAATATTGTTATTTTTGGTATGTCTCATTAATCATATATTGCCAAAATCTGCAGAAACAGAAACTTGCTCTGGCAAAACAATTAAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAGAATAGAAGAGCAAGGTAACTAAGGGCACATTATCTTTTCTGTGTTATGAGGATATTATTTTTTGTCATAAACCAATATTTATTTTGTTTATTTCTTCTATTAAAAAAATTGAAAAAATATATCTATTTAGTTTTTTCCTAATAAAAAAATGAAAAACATAATGTACAGGACCAAGTTAAAGCAAACGGAAGTGGATTGTGAGTACTTAAAAAGATGTTGTGAGACTCTAACAGAAGAAAATAAAAGGTTACAAAAGGAACTTCAAGAATTGAGAGCTTTGAAAACTTCTCAACCATTCTACATGCAACTTCCAGCTACCACTCTCACTATGTGTCCTTCTTGTGAAAGGGTCGCCACCAACACCACCGGAACCACTGCCACTAAACAAACCATCTCGATTACCACCGGTGGGCACCGCCAATAA
Protein sequence

>MS.gene52674.t1

MELALSLGDTPKTFSLFENPTKLPNKTFCIPLEEHGLTEKSLNQKSDSSDPPIQLNLLPSTPVLHSQPSPLLRIPWLNGAIGVEPARVSDVNQFRLASVEDTTEEGAAVSSPNSAASYYQMDFSIMNGNGDAAARNSSREEGADRNTSDDEENGSTRKKLRLSKEQSAFLEDSFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENKRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTTGTTATKQTISITTGGHRQ