AlfalfaGEDB | MS.gene52690

M. sativa cultivar XinJiangDaYe / MS.gene52690

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52690.t1	AES81523.1	94.4	161	9	0	1	161	1	161	3.50E-84	320.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52690.t1	G7KWB3	94.4	161	9	0	1	161	1	161	2.5e-84	320.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene52690.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52690.t1	MTR_7g093700	94.410	161	9	0	1	161	1	161	4.05e-104	295
MS.gene52690.t1	MTR_7g093670	82.927	82	14	0	80	161	1	82	5.95e-43	137
MS.gene52690.t1	MTR_7g093690	62.264	106	25	3	69	161	33	136	6.25e-33	114
MS.gene52690.t1	MTR_3g011210	48.352	91	23	2	72	138	31	121	7.50e-18	75.5
MS.gene52690.t1	MTR_7g093660	63.462	52	18	1	98	149	1	51	1.83e-12	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 44 sgRNAs with CRISPR-Local

Find 43 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACATAGTGTGTGATGA+AGG	0.595436	7.2:+15798359	None:intergenic
AACATAGTGTGTGATGAAGG+TGG	0.727614	7.2:+15798362	None:intergenic
AAGAATTACCAGTGGTGTGG+CGG	0.548905	7.2:-15798160	MS.gene52690:CDS
AAGATCTCGTGCAGTTCTGA+AGG	0.551614	7.2:+15798475	None:intergenic
AATAATATCGATGGATCTTT+GGG	0.246908	7.2:-15798239	MS.gene52690:CDS
ACAATTGGAACCTCTGGTAT+AGG	0.430649	7.2:+15798284	None:intergenic
ACACAATTTGCAACATAAAT+CGG	0.291650	7.2:-15798433	MS.gene52690:CDS
ACCACTGGTAATTCTTCAGT+TGG	0.510267	7.2:+15798167	None:intergenic
ACTATGTTGTTTCCTATGCA+TGG	0.528781	7.2:-15798347	MS.gene52690:CDS
AGAATTACCAGTGGTGTGGC+GGG	0.597554	7.2:-15798159	MS.gene52690:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAATATCGATGGATCTTTG+GGG	-	chr7.2:15798461-15798480	MS.gene52690:CDS	30.0%
CAATAATATCGATGGATCTT+TGG	-	chr7.2:15798459-15798478	MS.gene52690:CDS	30.0%
CACAATTTGCAACATAAATC+GGG	-	chr7.2:15798267-15798286	MS.gene52690:CDS	30.0%
CGTGATTACAATAATATCGA+TGG	-	chr7.2:15798451-15798470	MS.gene52690:CDS	30.0%
AACAACATAGTGTGTGATGA+AGG	+	chr7.2:15798343-15798362	None:intergenic	35.0%
TCTCATCATCTGATTCAGAT+AGG	+	chr7.2:15798141-15798160	None:intergenic	35.0%
TGCAAATTGTGTATGTGCTT+TGG	+	chr7.2:15798258-15798277	None:intergenic	35.0%
AACATAGTGTGTGATGAAGG+TGG	+	chr7.2:15798340-15798359	None:intergenic	40.0%
ACAATTGGAACCTCTGGTAT+AGG	+	chr7.2:15798418-15798437	None:intergenic	40.0%
ACCACTGGTAATTCTTCAGT+TGG	+	chr7.2:15798535-15798554	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	15798118	15798603	15798118	ID=MS.gene52690
chr7.2	mRNA	15798118	15798603	15798118	ID=MS.gene52690.t1;Parent=MS.gene52690
chr7.2	exon	15798118	15798603	15798118	ID=MS.gene52690.t1.exon1;Parent=MS.gene52690.t1
chr7.2	CDS	15798118	15798603	15798118	ID=cds.MS.gene52690.t1;Parent=MS.gene52690.t1

Gene Sequence

>MS.gene52690

ATGGAGTCAGATATTGAACTCCTATCTGAATCAGATGATGAGAGCAGTACTGGCAGCAGCATCATTACTAACGTTGCTCCTATTCCATGCAACCATTGCCATGAAACCTTCAGAACTGCACGAGATCTTTCTTGGCACCAAAGCACATACACAATTTGCAACATAAATCGGGCTTTATTGAGACTAAACAACACACACCACATTGGACCACCATCTCCACCACCTTCATCACACACTATGTTGTTTCCTATGCATGGAAGCGGTAATTATAACCGCCGTTTTCATCCATACATGAGGCCTATACCAGAGGTTCCAATTGTCACTCGTACTGATCGTGATTACAATAATATCGATGGATCTTTGGGGAGAACAATGGATCTTATTTCTCTGATCGACAAGCCGATTGATTCAGCTCCAACTGAAGAATTACCAGTGGTGTGGCGGGATGGAAGCACCAATGACATCAACCTTGATTTGAAGCTCTAG

Protein sequence

>MS.gene52690.t1

MESDIELLSESDDESSTGSSIITNVAPIPCNHCHETFRTARDLSWHQSTYTICNINRALLRLNNTHHIGPPSPPPSSHTMLFPMHGSGNYNRRFHPYMRPIPEVPIVTRTDRDYNNIDGSLGRTMDLISLIDKPIDSAPTEELPVVWRDGSTNDINLDLKL