AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52720.t1 MTR_6g087720 62.722 338 92 9 15 344 1 312 6.94e-135 386
MS.gene52720.t1 MTR_3g088985 53.988 163 52 6 23 185 1 140 1.82e-42 145
MS.gene52720.t1 MTR_7g094130 62.963 81 24 2 23 103 1 75 1.14e-20 86.3
MS.gene52720.t1 MTR_2g012700 36.559 93 59 0 247 339 24 116 5.90e-17 76.6
MS.gene52720.t1 MTR_2g062330 37.209 86 53 1 247 332 44 128 2.66e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 90 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTAGTCTTACACTGTTAA+AGG 0.206618 7.2:+15304927 None:intergenic
AAAGATGCCATTCATAAATA+TGG 0.240729 7.2:-15305023 MS.gene52720:CDS
GCCATTGGGTGGGGTCATTC+TGG 0.242278 7.2:+15306431 None:intergenic
TCCATTGTTGTGCAGATAAA+TGG 0.257892 7.2:+15304953 None:intergenic
AACCTCTTAGAAATTCTTCT+TGG 0.258750 7.2:+15304484 None:intergenic
GCCATTCATAAATATGGTTT+TGG 0.271055 7.2:-15305017 MS.gene52720:CDS
GAATGGCATCTTTGATATCT+AGG 0.289351 7.2:+15305033 None:intergenic
CCGTTTCTGCACTTATTTCA+AGG 0.331561 7.2:-15305258 MS.gene52720:CDS
ACGGTGACCAATTGAATTCT+TGG 0.332568 7.2:-15304649 MS.gene52720:CDS
TCAGATCCCTACTTTCTCTA+AGG 0.351236 7.2:+15306152 None:intergenic
TTCCACAGGACATTGGATTA+TGG 0.358599 7.2:-15306339 MS.gene52720:CDS
GAAGCTTGGTGCAAGAAATA+TGG 0.370912 7.2:-15305206 MS.gene52720:CDS
GTTGATTAAGAGATTCATTC+CGG 0.391237 7.2:+15306503 None:intergenic
TAATCCTCCAAGAATTCAAT+TGG 0.395729 7.2:+15304642 None:intergenic
TTTAGTCTTACACTGTTAAA+GGG 0.397966 7.2:+15304928 None:intergenic
ACCTCTTAGAAATTCTTCTT+GGG 0.403734 7.2:+15304485 None:intergenic
AGGGGAAGAGAGGAGCCATT+TGG 0.404423 7.2:+15305053 None:intergenic
AGAAGTTTCTTTCTGAAGGT+TGG 0.409258 7.2:-15304366 MS.gene52720:CDS
AGGTTCACTATGGCAAATAA+TGG 0.418966 7.2:-15304298 MS.gene52720:CDS
ACCACCGGAGAGATTCATTC+TGG 0.420919 7.2:+15306389 None:intergenic
GGGGAAGAGAGGAGCCATTT+GGG 0.426567 7.2:+15305054 None:intergenic
ACCCCTCACGCCATTGGGTG+GGG 0.427348 7.2:+15306422 None:intergenic
TTTGACGTATTAGAATCTAA+TGG 0.432037 7.2:+15304701 None:intergenic
AAAGGAAGCTTCGAAGGATT+AGG 0.432973 7.2:-15304257 None:intergenic
TAAATGGTGCCGGGTTGAGC+CGG 0.436905 7.2:+15304969 None:intergenic
CTTTCTCTAAGGCGTCGAAT+TGG 0.438948 7.2:+15306163 None:intergenic
GAAGGACCCCTCACGCCATT+GGG 0.441185 7.2:+15306417 None:intergenic
CTCTTAATCAACGCTTCCTC+CGG 0.447180 7.2:-15306492 MS.gene52720:CDS
AGGAATGATGTTGGCGCAAA+AGG 0.449095 7.2:-15304275 MS.gene52720:CDS
ACGGTGTTAATCTGAATTAC+CGG 0.449121 7.2:-15306192 MS.gene52720:CDS
AGAAGGACCCCTCACGCCAT+TGG 0.454731 7.2:+15306416 None:intergenic
TCTATGAACACTTCGAAGCT+TGG 0.455065 7.2:-15305220 MS.gene52720:CDS
CATGAGAAGTTTCTTTCTGA+AGG 0.459683 7.2:-15304370 MS.gene52720:CDS
TCCCAAGAAGAATTTCTAAG+AGG 0.464324 7.2:-15304486 MS.gene52720:CDS
CCTTGAAATAAGTGCAGAAA+CGG 0.470176 7.2:+15305258 None:intergenic
CATTGAGAAATTGCAGAGAA+AGG 0.474493 7.2:+15305096 None:intergenic
CTACAGGTTCAAACTGTTCA+AGG 0.480164 7.2:-15305153 MS.gene52720:CDS
AAAGTCATTGATCAAGAGTT+CGG 0.481740 7.2:-15304436 MS.gene52720:CDS
ATGTTAATCAACGCATCATC+CGG 0.497187 7.2:-15306522 MS.gene52720:CDS
GACCCCTCACGCCATTGGGT+GGG 0.498339 7.2:+15306421 None:intergenic
AAATGGTGCCGGGTTGAGCC+GGG 0.500706 7.2:+15304970 None:intergenic
AATGGCATCTTTGATATCTA+GGG 0.502685 7.2:+15305034 None:intergenic
GCCAAAACCATATTTATGAA+TGG 0.503191 7.2:+15305016 None:intergenic
TCCTCCTCCTTCGAAAACTC+TGG 0.506973 7.2:+15306311 None:intergenic
GGACCCCTCACGCCATTGGG+TGG 0.509390 7.2:+15306420 None:intergenic
TGATATTCTGAGGTTCACTA+TGG 0.509543 7.2:-15304308 MS.gene52720:CDS
ACCGTTGGCGAGATTCATTC+CGG 0.510091 7.2:+15306473 None:intergenic
TCCTCCAGAATGAATCTCTC+CGG 0.519865 7.2:-15306393 MS.gene52720:CDS
GTGACCAATTGAATTCTTGG+AGG 0.533209 7.2:-15304646 MS.gene52720:CDS
CTTTAATGTAAGAAGAATTG+TGG 0.535815 7.2:+15304455 None:intergenic
GGCGCAAAAGGAAGCTTCGA+AGG 0.538099 7.2:-15304263 MS.gene52720:CDS
CAAGTACATGTGCGACATCC+CGG 0.538345 7.2:-15304988 MS.gene52720:CDS
GGGGTCATTCTGGAGGATGA+AGG 0.541089 7.2:+15306441 None:intergenic
CAGAGGAACATAAACGCTAC+AGG 0.544391 7.2:-15305169 MS.gene52720:CDS
ACGATGTAGGAGTGTTCCAC+AGG 0.547643 7.2:-15306353 MS.gene52720:CDS
ACCCCACCCAATGGCGTGAG+GGG 0.547770 7.2:-15306423 MS.gene52720:CDS
AGATTCATTCTGGAGGAAGA+AGG 0.550723 7.2:+15306399 None:intergenic
TTAAAACGCTTTGAAATGGA+CGG 0.557445 7.2:-15304668 MS.gene52720:CDS
GACCCCACCCAATGGCGTGA+GGG 0.562465 7.2:-15306424 MS.gene52720:CDS
AGGAGTGTTCCACAGGACAT+TGG 0.565776 7.2:-15306346 MS.gene52720:CDS
GTTGTGCAGATAAATGGTGC+CGG 0.568559 7.2:+15304959 None:intergenic
TTGTGCAGATAAATGGTGCC+GGG 0.569910 7.2:+15304960 None:intergenic
GTAACTGAATCGATGATCAA+AGG 0.576236 7.2:-15304617 MS.gene52720:CDS
TTATTTCAAGGTTTCTGATG+CGG 0.578453 7.2:-15305246 MS.gene52720:CDS
GGCGTCGAATTGGTAGCATC+CGG 0.580533 7.2:+15306173 None:intergenic
TGACCCCACCCAATGGCGTG+AGG 0.582745 7.2:-15306425 MS.gene52720:CDS
TTTACAATTGCAGTTGGACA+CGG 0.583865 7.2:-15306211 MS.gene52720:intron
TGAATCTCGCCAACGGTGTG+AGG 0.586564 7.2:-15306467 MS.gene52720:CDS
ACCATTTATCTGCACAACAA+TGG 0.588400 7.2:-15304954 MS.gene52720:CDS
TCCAGAATGACCCCACCCAA+TGG 0.592985 7.2:-15306432 MS.gene52720:CDS
TGCGACATCCCGGCTCAACC+CGG 0.593962 7.2:-15304978 MS.gene52720:CDS
GATCAAAGGAGATTGTGTAC+TGG 0.595688 7.2:-15304603 MS.gene52720:intron
ATTGGGTGGGGTCATTCTGG+AGG 0.605328 7.2:+15306434 None:intergenic
TTTGATATCTAGGGGAAGAG+AGG 0.606636 7.2:+15305043 None:intergenic
GAATTTCAGATACACGATGT+AGG 0.607562 7.2:-15306366 MS.gene52720:CDS
TTAAGGAGGGTGATATTCTG+AGG 0.608171 7.2:-15304318 MS.gene52720:CDS
TGAAGGAAGCCTCACACCGT+TGG 0.609893 7.2:+15306458 None:intergenic
GTCCATAATCCAATGTCCTG+TGG 0.609969 7.2:+15306337 None:intergenic
GCTGCTGATGATCACCCAAA+TGG 0.613716 7.2:-15305068 MS.gene52720:CDS
AAATAATGGAGGAATGATGT+TGG 0.624694 7.2:-15304284 MS.gene52720:CDS
TTCACTATGGCAAATAATGG+AGG 0.627789 7.2:-15304295 MS.gene52720:CDS
TCCGGAATGAATCTCGCCAA+CGG 0.632061 7.2:-15306474 MS.gene52720:CDS
TCCAGAATGAATCTCTCCGG+TGG 0.636854 7.2:-15306390 MS.gene52720:CDS
ACCGGAGAGATTCATTCTGG+AGG 0.649977 7.2:+15306392 None:intergenic
GTGTATCTGAAATTCACCAC+CGG 0.651973 7.2:+15306374 None:intergenic
TGTCGCACATGTACTTGCTG+AGG 0.657387 7.2:+15304994 None:intergenic
ATGGCATCTTTGATATCTAG+GGG 0.670110 7.2:+15305035 None:intergenic
GTAGCGTTTATGTTCCTCTG+AGG 0.682349 7.2:+15305172 None:intergenic
GTTGGCGAGATTCATTCCGG+AGG 0.690341 7.2:+15306476 None:intergenic
TGGCAAAACATACTCCTCAG+AGG 0.707814 7.2:-15305186 MS.gene52720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAATATATAGGAA+AGG + chr7.2:15304707-15304726 None:intergenic 10.0%
!! CTCTTATAAAAAAAATATAT+AGG + chr7.2:15304712-15304731 None:intergenic 10.0%
!!! ATATTTTTTTTATAAGAGTT+AGG - chr7.2:15304714-15304733 MS.gene52720:intron 10.0%
!! AAAATATCAAATTATAGACT+TGG + chr7.2:15304956-15304975 None:intergenic 15.0%
!! AATCATATTAAGATTTATCT+TGG - chr7.2:15304542-15304561 MS.gene52720:intron 15.0%
!! ATTGTATTTACAAAAATGAA+CGG + chr7.2:15304771-15304790 None:intergenic 15.0%
!! CTTAAATTCATCATATAATA+GGG - chr7.2:15305051-15305070 MS.gene52720:CDS 15.0%
!! TTAAATTCATCATATAATAG+GGG - chr7.2:15305052-15305071 MS.gene52720:CDS 15.0%
!! AAAAGAAATCAAGAATAGAA+AGG + chr7.2:15305899-15305918 None:intergenic 20.0%
!! CCTATTATATGATGAATTTA+AGG + chr7.2:15305053-15305072 None:intergenic 20.0%
!! CCTTAAATTCATCATATAAT+AGG - chr7.2:15305050-15305069 MS.gene52720:CDS 20.0%
!! TAGAAAATGAAAATGAAAGA+GGG + chr7.2:15304517-15304536 None:intergenic 20.0%
!! TATTGAGTTATTCTGTTTAA+CGG + chr7.2:15304851-15304870 None:intergenic 20.0%
!! TTACAATTAATTGTTTGGAA+TGG - chr7.2:15305463-15305482 MS.gene52720:intron 20.0%
!! TTAGAAAATGAAAATGAAAG+AGG + chr7.2:15304518-15304537 None:intergenic 20.0%
!!! AAAGTTGTAGTTTTGAATAA+GGG - chr7.2:15306017-15306036 MS.gene52720:intron 20.0%
!!! ATTTTTAAAACGCTTTGAAA+TGG - chr7.2:15306120-15306139 MS.gene52720:intron 20.0%
!!! GTTCATTTTTGTAAATACAA+TGG - chr7.2:15304770-15304789 MS.gene52720:intron 20.0%
! AAAGATGCCATTCATAAATA+TGG - chr7.2:15305769-15305788 MS.gene52720:intron 25.0%
! ACAAAAAAAATAATCCACGT+CGG + chr7.2:15306066-15306085 None:intergenic 25.0%
! AGGACAATTATAAAAAGAGT+TGG + chr7.2:15305202-15305221 None:intergenic 25.0%
! CTTTAATGTAAGAAGAATTG+TGG + chr7.2:15306340-15306359 None:intergenic 25.0%
! GGACAATTATAAAAAGAGTT+GGG + chr7.2:15305201-15305220 None:intergenic 25.0%
! TAAAAGTCATAGATATGCAA+AGG + chr7.2:15305226-15305245 None:intergenic 25.0%
! TCTGCTTACAATTAATTGTT+TGG - chr7.2:15305458-15305477 MS.gene52720:intron 25.0%
! TTTGACGTATTAGAATCTAA+TGG + chr7.2:15306094-15306113 None:intergenic 25.0%
!! ATTAATTGTTTGGAATGGAA+TGG - chr7.2:15305468-15305487 MS.gene52720:intron 25.0%
!! CTATAATTGATCTATCGTTT+TGG - chr7.2:15305400-15305419 MS.gene52720:intron 25.0%
!! TGCTTTCATATCTTTTGTTA+CGG - chr7.2:15305930-15305949 MS.gene52720:intron 25.0%
!!! AAAAATGAACGGATTAGAAT+TGG + chr7.2:15304760-15304779 None:intergenic 25.0%
!!! CAATTTGCATGCATTTTTTA+TGG - chr7.2:15305347-15305366 MS.gene52720:intron 25.0%
!!! GAAAGTTGTAGTTTTGAATA+AGG - chr7.2:15306016-15306035 MS.gene52720:intron 25.0%
!!! TCTTGATTTCTTTTTCATCT+CGG - chr7.2:15305905-15305924 MS.gene52720:intron 25.0%
!!! TTTAGTCTTACACTGTTAAA+GGG + chr7.2:15305867-15305886 None:intergenic 25.0%
AAAGTCATTGATCAAGAGTT+CGG - chr7.2:15306356-15306375 MS.gene52720:CDS 30.0%
AACCTCTTAGAAATTCTTCT+TGG + chr7.2:15306311-15306330 None:intergenic 30.0%
AATGGCATCTTTGATATCTA+GGG + chr7.2:15305761-15305780 None:intergenic 30.0%
ACAATTAATTGTAAGCAGAC+AGG + chr7.2:15305457-15305476 None:intergenic 30.0%
ACCTCTTAGAAATTCTTCTT+GGG + chr7.2:15306310-15306329 None:intergenic 30.0%
ATTCCTAGAATATGTTTCTC+AGG + chr7.2:15304987-15305006 None:intergenic 30.0%
CAATTCCAAATTCTTCTGAT+GGG - chr7.2:15305284-15305303 MS.gene52720:intron 30.0%
GAAATCAAGAATAGAAAGGA+TGG + chr7.2:15305895-15305914 None:intergenic 30.0%
GCCAAAACCATATTTATGAA+TGG + chr7.2:15305779-15305798 None:intergenic 30.0%
GTTGATTAAGAGATTCATTC+CGG + chr7.2:15304292-15304311 None:intergenic 30.0%
TAATCCTCCAAGAATTCAAT+TGG + chr7.2:15306153-15306172 None:intergenic 30.0%
TAGGAATAAATATACATGCG+TGG - chr7.2:15305000-15305019 MS.gene52720:CDS 30.0%
TGTTAGAGCCAAAAAAGTTA+AGG - chr7.2:15306457-15306476 MS.gene52720:CDS 30.0%
TTATTTCAAGGTTTCTGATG+CGG - chr7.2:15305546-15305565 MS.gene52720:intron 30.0%
! AAATAATGGAGGAATGATGT+TGG - chr7.2:15306508-15306527 MS.gene52720:CDS 30.0%
! GCCATTCATAAATATGGTTT+TGG - chr7.2:15305775-15305794 MS.gene52720:intron 30.0%
! TTTCATATCTTTTGTTACGG+TGG - chr7.2:15305933-15305952 MS.gene52720:intron 30.0%
!! GTTTAGTCTTACACTGTTAA+AGG + chr7.2:15305868-15305887 None:intergenic 30.0%
!! TTAAAACGCTTTGAAATGGA+CGG - chr7.2:15306124-15306143 MS.gene52720:intron 30.0%
!!! GTTTTGGTTTTTGGATACTT+GGG - chr7.2:15305416-15305435 MS.gene52720:intron 30.0%
!!! TGATCTATCGTTTTGGTTTT+TGG - chr7.2:15305407-15305426 MS.gene52720:intron 30.0%
ACCATTTATCTGCACAACAA+TGG - chr7.2:15305838-15305857 MS.gene52720:intron 35.0%
AGAGCCAAAAAAGTTAAGGA+GGG - chr7.2:15306461-15306480 MS.gene52720:CDS 35.0%
AGGTTCACTATGGCAAATAA+TGG - chr7.2:15306494-15306513 MS.gene52720:CDS 35.0%
AGTCATAGATATGCAAAGGA+AGG + chr7.2:15305222-15305241 None:intergenic 35.0%
ATATAACCAAGCATAACACG+CGG + chr7.2:15306255-15306274 None:intergenic 35.0%
ATGGCATCTTTGATATCTAG+GGG + chr7.2:15305760-15305779 None:intergenic 35.0%
ATGTTAATCAACGCATCATC+CGG - chr7.2:15304270-15304289 MS.gene52720:CDS 35.0%
ATTGCTTAATAATCGCCTGT+TGG + chr7.2:15305268-15305287 None:intergenic 35.0%
CATGAGAAGTTTCTTTCTGA+AGG - chr7.2:15306422-15306441 MS.gene52720:CDS 35.0%
CATTGAGAAATTGCAGAGAA+AGG + chr7.2:15305699-15305718 None:intergenic 35.0%
CCTTGAAATAAGTGCAGAAA+CGG + chr7.2:15305537-15305556 None:intergenic 35.0%
GAACCTGAGAAACATATTCT+AGG - chr7.2:15304981-15305000 MS.gene52720:CDS 35.0%
GAATGGCATCTTTGATATCT+AGG + chr7.2:15305762-15305781 None:intergenic 35.0%
GAATTTCAGATACACGATGT+AGG - chr7.2:15304426-15304445 MS.gene52720:CDS 35.0%
GCAATTCCAAATTCTTCTGA+TGG - chr7.2:15305283-15305302 MS.gene52720:intron 35.0%
GGCTGTATGTTAGATTTATG+CGG - chr7.2:15305954-15305973 MS.gene52720:intron 35.0%
GTAACTGAATCGATGATCAA+AGG - chr7.2:15306175-15306194 MS.gene52720:CDS 35.0%
TAAATTTATGACTACCGACG+TGG - chr7.2:15306049-15306068 MS.gene52720:intron 35.0%
TAGAGCCAAAAAAGTTAAGG+AGG - chr7.2:15306460-15306479 MS.gene52720:CDS 35.0%
TCCATTGTTGTGCAGATAAA+TGG + chr7.2:15305842-15305861 None:intergenic 35.0%
TCCCAAGAAGAATTTCTAAG+AGG - chr7.2:15306306-15306325 MS.gene52720:intron 35.0%
TGTCCAACTGCAATTGTAAA+AGG + chr7.2:15304581-15304600 None:intergenic 35.0%
TTCACTATGGCAAATAATGG+AGG - chr7.2:15306497-15306516 MS.gene52720:CDS 35.0%
TTTACAATTGCAGTTGGACA+CGG - chr7.2:15304581-15304600 MS.gene52720:intron 35.0%
! ACGGTGTTAATCTGAATTAC+CGG - chr7.2:15304600-15304619 MS.gene52720:intron 35.0%
! AGAAGTTTCTTTCTGAAGGT+TGG - chr7.2:15306426-15306445 MS.gene52720:CDS 35.0%
! ATTTTTGTGAGGAGGCTTAA+TGG + chr7.2:15305674-15305693 None:intergenic 35.0%
! CTAATTTTCTTGGACGAATG+CGG + chr7.2:15304930-15304949 None:intergenic 35.0%
! GACTTGGACTCTAATTTTCT+TGG + chr7.2:15304940-15304959 None:intergenic 35.0%
! GCAAAATGTTTGATGACAAG+AGG - chr7.2:15305141-15305160 MS.gene52720:CDS 35.0%
! TCACCTTTTACAATTGCAGT+TGG - chr7.2:15304575-15304594 MS.gene52720:intron 35.0%
! TTGTTTGGAATGGAATGGAA+TGG - chr7.2:15305473-15305492 MS.gene52720:intron 35.0%
! TTTTTGTGAGGAGGCTTAAT+GGG + chr7.2:15305673-15305692 None:intergenic 35.0%
!! TGATATTCTGAGGTTCACTA+TGG - chr7.2:15306484-15306503 MS.gene52720:CDS 35.0%
!!! AGAGAAAGGTCATTTTTGTG+AGG + chr7.2:15305685-15305704 None:intergenic 35.0%
!!! ATCACCCTCCTTAACTTTTT+TGG + chr7.2:15306468-15306487 None:intergenic 35.0%
!!! CGTTTTGGTTTTTGGATACT+TGG - chr7.2:15305415-15305434 MS.gene52720:intron 35.0%
ACGGTGACCAATTGAATTCT+TGG - chr7.2:15306143-15306162 MS.gene52720:intron 40.0%
ATGGGAAGGAAACAACCAAT+GGG - chr7.2:15305302-15305321 MS.gene52720:intron 40.0%
ATTGGTGTAGATGGTGCAAA+AGG + chr7.2:15304742-15304761 None:intergenic 40.0%
CCGTTTCTGCACTTATTTCA+AGG - chr7.2:15305534-15305553 MS.gene52720:intron 40.0%
CTACAGGTTCAAACTGTTCA+AGG - chr7.2:15305639-15305658 MS.gene52720:intron 40.0%
GATCAAAGGAGATTGTGTAC+TGG - chr7.2:15306189-15306208 MS.gene52720:CDS 40.0%
GGATTGGATTGCATGTTCAA+GGG - chr7.2:15305494-15305513 MS.gene52720:intron 40.0%
GTGACCAATTGAATTCTTGG+AGG - chr7.2:15306146-15306165 MS.gene52720:intron 40.0%
GTTGGGGAAGAATTCATAGA+TGG - chr7.2:15305096-15305115 MS.gene52720:CDS 40.0%
TCAGATCCCTACTTTCTCTA+AGG + chr7.2:15304643-15304662 None:intergenic 40.0%
TCCAAATTCTTCTGATGGGA+AGG - chr7.2:15305288-15305307 MS.gene52720:intron 40.0%
TCCTTCCCATCAGAAGAATT+TGG + chr7.2:15305292-15305311 None:intergenic 40.0%
TCTATGAACACTTCGAAGCT+TGG - chr7.2:15305572-15305591 MS.gene52720:intron 40.0%
TGGAATGGAATGGAATGGAT+TGG - chr7.2:15305478-15305497 MS.gene52720:intron 40.0%
TGTAAGCAGACAGGCAATTA+AGG + chr7.2:15305448-15305467 None:intergenic 40.0%
TTAAGGAGGGTGATATTCTG+AGG - chr7.2:15306474-15306493 MS.gene52720:CDS 40.0%
TTCCACAGGACATTGGATTA+TGG - chr7.2:15304453-15304472 MS.gene52720:CDS 40.0%
TTGAGTAAAACCTACCCCAT+TGG + chr7.2:15305320-15305339 None:intergenic 40.0%
TTTGATATCTAGGGGAAGAG+AGG + chr7.2:15305752-15305771 None:intergenic 40.0%
! AGATTCATTCTGGAGGAAGA+AGG + chr7.2:15304396-15304415 None:intergenic 40.0%
! CGGATTAGAATTGGTGTAGA+TGG + chr7.2:15304751-15304770 None:intergenic 40.0%
! GTGTATCTGAAATTCACCAC+CGG + chr7.2:15304421-15304440 None:intergenic 40.0%
! TGGATTGGATTGCATGTTCA+AGG - chr7.2:15305493-15305512 MS.gene52720:intron 40.0%
!! GAAGCTTGGTGCAAGAAATA+TGG - chr7.2:15305586-15305605 MS.gene52720:intron 40.0%
!!! GAAAGGTCATTTTTGTGAGG+AGG + chr7.2:15305682-15305701 None:intergenic 40.0%
AAGGAAACAACCAATGGGGT+AGG - chr7.2:15305307-15305326 MS.gene52720:intron 45.0%
AGGAATGATGTTGGCGCAAA+AGG - chr7.2:15306517-15306536 MS.gene52720:CDS 45.0%
CAGAGGAACATAAACGCTAC+AGG - chr7.2:15305623-15305642 MS.gene52720:intron 45.0%
CTCTTAATCAACGCTTCCTC+CGG - chr7.2:15304300-15304319 MS.gene52720:CDS 45.0%
GATGGGAAGGAAACAACCAA+TGG - chr7.2:15305301-15305320 MS.gene52720:intron 45.0%
GGGGAAGAATTCATAGATGG+TGG - chr7.2:15305099-15305118 MS.gene52720:CDS 45.0%
GTAGCGTTTATGTTCCTCTG+AGG + chr7.2:15305623-15305642 None:intergenic 45.0%
GTCCATAATCCAATGTCCTG+TGG + chr7.2:15304458-15304477 None:intergenic 45.0%
GTTGTGCAGATAAATGGTGC+CGG + chr7.2:15305836-15305855 None:intergenic 45.0%
TCCTCCAGAATGAATCTCTC+CGG - chr7.2:15304399-15304418 MS.gene52720:CDS 45.0%
TCGACGCCTTAGAGAAAGTA+GGG - chr7.2:15304634-15304653 MS.gene52720:CDS 45.0%
TGGCAAAACATACTCCTCAG+AGG - chr7.2:15305606-15305625 MS.gene52720:intron 45.0%
TGGGAAGGAAACAACCAATG+GGG - chr7.2:15305303-15305322 MS.gene52720:intron 45.0%
TTATTGCCGCGTGTTATGCT+TGG - chr7.2:15306246-15306265 MS.gene52720:intron 45.0%
TTCGACGCCTTAGAGAAAGT+AGG - chr7.2:15304633-15304652 MS.gene52720:CDS 45.0%
TTGCCACATGATAACACCAG+CGG + chr7.2:15305125-15305144 None:intergenic 45.0%
TTGTGCAGATAAATGGTGCC+GGG + chr7.2:15305835-15305854 None:intergenic 45.0%
! CTTTCCAGAGTTTTCGAAGG+AGG - chr7.2:15304477-15304496 MS.gene52720:CDS 45.0%
! GGACTTTCCAGAGTTTTCGA+AGG - chr7.2:15304474-15304493 MS.gene52720:CDS 45.0%
!! AATAGGGGTGTTGCATGTTG+AGG - chr7.2:15305067-15305086 MS.gene52720:CDS 45.0%
!! CTTTCTCTAAGGCGTCGAAT+TGG + chr7.2:15304632-15304651 None:intergenic 45.0%
ACCACCGGAGAGATTCATTC+TGG + chr7.2:15304406-15304425 None:intergenic 50.0%
ACCGGAGAGATTCATTCTGG+AGG + chr7.2:15304403-15304422 None:intergenic 50.0%
ACCGTTGGCGAGATTCATTC+CGG + chr7.2:15304322-15304341 None:intergenic 50.0%
AGTTGGGATCCGTTGACACT+AGG + chr7.2:15305185-15305204 None:intergenic 50.0%
CAAGTACATGTGCGACATCC+CGG - chr7.2:15305804-15305823 MS.gene52720:intron 50.0%
CCGTTGACACCTAGTGTCAA+CGG - chr7.2:15305173-15305192 MS.gene52720:CDS 50.0%
CCGTTGACACTAGGTGTCAA+CGG + chr7.2:15305176-15305195 None:intergenic 50.0%
GCTGCTGATGATCACCCAAA+TGG - chr7.2:15305724-15305743 MS.gene52720:intron 50.0%
GTGTTGCATGTTGAGGATGG+TGG - chr7.2:15305074-15305093 MS.gene52720:CDS 50.0%
TCCAGAATGAATCTCTCCGG+TGG - chr7.2:15304402-15304421 MS.gene52720:CDS 50.0%
TCCGGAATGAATCTCGCCAA+CGG - chr7.2:15304318-15304337 MS.gene52720:CDS 50.0%
TCCTCCTCCTTCGAAAACTC+TGG + chr7.2:15304484-15304503 None:intergenic 50.0%
TCCTCCTTTCCTCTCTCTGT+CGG - chr7.2:15304877-15304896 MS.gene52720:intron 50.0%
TTCACCGACAGAGAGAGGAA+AGG + chr7.2:15304884-15304903 None:intergenic 50.0%
TTTCCTCTCTCTGTCGGTGA+AGG - chr7.2:15304883-15304902 MS.gene52720:intron 50.0%
! AATTCATAGATGGTGGCCGC+TGG - chr7.2:15305106-15305125 MS.gene52720:CDS 50.0%
! AGAGTTTTCGAAGGAGGAGG+AGG - chr7.2:15304483-15304502 MS.gene52720:CDS 50.0%
! CATGTTGAGGATGGTGGTTG+GGG - chr7.2:15305080-15305099 MS.gene52720:CDS 50.0%
! GCATGTTGAGGATGGTGGTT+GGG - chr7.2:15305079-15305098 MS.gene52720:CDS 50.0%
! TCCAGAGTTTTCGAAGGAGG+AGG - chr7.2:15304480-15304499 MS.gene52720:CDS 50.0%
! TGCATGTTGAGGATGGTGGT+TGG - chr7.2:15305078-15305097 MS.gene52720:CDS 50.0%
! TGTCGCACATGTACTTGCTG+AGG + chr7.2:15305801-15305820 None:intergenic 50.0%
!! ACGATGTAGGAGTGTTCCAC+AGG - chr7.2:15304439-15304458 MS.gene52720:CDS 50.0%
!! AGGAGTGTTCCACAGGACAT+TGG - chr7.2:15304446-15304465 MS.gene52720:CDS 50.0%
ACCGACAGAGAGAGGAAAGG+AGG + chr7.2:15304881-15304900 None:intergenic 55.0%
AGGGGAAGAGAGGAGCCATT+TGG + chr7.2:15305742-15305761 None:intergenic 55.0%
ATTGGGTGGGGTCATTCTGG+AGG + chr7.2:15304361-15304380 None:intergenic 55.0%
GCCTGTTGGCAACGCTGAAA+CGG + chr7.2:15305254-15305273 None:intergenic 55.0%
GGCGCAAAAGGAAGCTTCGA+AGG - chr7.2:15306529-15306548 MS.gene52720:CDS 55.0%
GGGGAAGAGAGGAGCCATTT+GGG + chr7.2:15305741-15305760 None:intergenic 55.0%
GTTGGCGAGATTCATTCCGG+AGG + chr7.2:15304319-15304338 None:intergenic 55.0%
TCCAGAATGACCCCACCCAA+TGG - chr7.2:15304360-15304379 MS.gene52720:CDS 55.0%
TCCGTTTCAGCGTTGCCAAC+AGG - chr7.2:15305250-15305269 MS.gene52720:CDS 55.0%
TGAAGGAAGCCTCACACCGT+TGG + chr7.2:15304337-15304356 None:intergenic 55.0%
TGAATCTCGCCAACGGTGTG+AGG - chr7.2:15304325-15304344 MS.gene52720:CDS 55.0%
! GGCGTCGAATTGGTAGCATC+CGG + chr7.2:15304622-15304641 None:intergenic 55.0%
! GGGGTCATTCTGGAGGATGA+AGG + chr7.2:15304354-15304373 None:intergenic 55.0%
! TAAATGGTGCCGGGTTGAGC+CGG + chr7.2:15305826-15305845 None:intergenic 55.0%
!! GGGGTGTTGCATGTTGAGGA+TGG - chr7.2:15305071-15305090 MS.gene52720:CDS 55.0%
!! TGGCCGCTGGTGTTATCATG+TGG - chr7.2:15305119-15305138 MS.gene52720:CDS 55.0%
AGAAGGACCCCTCACGCCAT+TGG + chr7.2:15304379-15304398 None:intergenic 60.0%
GAAGGACCCCTCACGCCATT+GGG + chr7.2:15304378-15304397 None:intergenic 60.0%
GCACCTTCACCGACAGAGAG+AGG + chr7.2:15304889-15304908 None:intergenic 60.0%
GCCATTGGGTGGGGTCATTC+TGG + chr7.2:15304364-15304383 None:intergenic 60.0%
! AAATGGTGCCGGGTTGAGCC+GGG + chr7.2:15305825-15305844 None:intergenic 60.0%
ACCCCACCCAATGGCGTGAG+GGG - chr7.2:15304369-15304388 MS.gene52720:CDS 65.0%
ACCCCTCACGCCATTGGGTG+GGG + chr7.2:15304373-15304392 None:intergenic 65.0%
GACCCCACCCAATGGCGTGA+GGG - chr7.2:15304368-15304387 MS.gene52720:CDS 65.0%
GACCCCTCACGCCATTGGGT+GGG + chr7.2:15304374-15304393 None:intergenic 65.0%
TGACCCCACCCAATGGCGTG+AGG - chr7.2:15304367-15304386 MS.gene52720:CDS 65.0%
TGCGACATCCCGGCTCAACC+CGG - chr7.2:15305814-15305833 MS.gene52720:intron 65.0%
GGACCCCTCACGCCATTGGG+TGG + chr7.2:15304375-15304394 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 15304258 15306556 15304258 ID=MS.gene52720
chr7.2 mRNA 15304258 15306556 15304258 ID=MS.gene52720.t1;Parent=MS.gene52720
chr7.2 exon 15306310 15306556 15306310 ID=MS.gene52720.t1.exon1;Parent=MS.gene52720.t1
chr7.2 CDS 15306310 15306556 15306310 ID=cds.MS.gene52720.t1;Parent=MS.gene52720.t1
chr7.2 exon 15306164 15306220 15306164 ID=MS.gene52720.t1.exon2;Parent=MS.gene52720.t1
chr7.2 CDS 15306164 15306220 15306164 ID=cds.MS.gene52720.t1;Parent=MS.gene52720.t1
chr7.2 exon 15304939 15305299 15304939 ID=MS.gene52720.t1.exon3;Parent=MS.gene52720.t1
chr7.2 CDS 15304939 15305299 15304939 ID=cds.MS.gene52720.t1;Parent=MS.gene52720.t1
chr7.2 exon 15304604 15304724 15304604 ID=MS.gene52720.t1.exon4;Parent=MS.gene52720.t1
chr7.2 CDS 15304604 15304724 15304604 ID=cds.MS.gene52720.t1;Parent=MS.gene52720.t1
chr7.2 exon 15304258 15304512 15304258 ID=MS.gene52720.t1.exon5;Parent=MS.gene52720.t1
chr7.2 CDS 15304258 15304512 15304258 ID=cds.MS.gene52720.t1;Parent=MS.gene52720.t1
Gene Sequence

>MS.gene52720

ATGGTTATGTTAATGTTAATCAACGCATCATCCGGAATGAATCTCTTAATCAACGCTTCCTCCGGAATGAATCTCGCCAACGGTGTGAGGCTTCCTTCATCCTCCAGAATGACCCCACCCAATGGCGTGAGGGGTCCTTCTTCCTCCAGAATGAATCTCTCCGGTGGTGAATTTCAGATACACGATGTAGGAGTGTTCCACAGGACATTGGATTATGGACTTTCCAGAGTTTTCGAAGGAGGAGGAGGTATATTCACCCTCTTTCATTTTCATTTTCTAAACAAAATCATATTAAGATTTATCTTGGTAATCTTTTCTCACCTTTTACAATTGCAGTTGGACACGGTGTTAATCTGAATTACCGGATGCTACCAATTCGACGCCTTAGAGAAAGTAGGGATCTGAAGTTCATGCTACTTTACTTTCTTTCTTTTAGTAATTAATAACCTTTCCTATATATTTTTTTTATAAGAGTTAGGATCCTTTTGCACCATCTACACCAATTCTAATCCGTTCATTTTTGTAAATACAATGGTTGTGATCAGTCACTTAAAATATCACATGATTGTCTCTAGCAACTCAAAACACTGCCGTTAAACAGAATAACTCAATACTCAGCTCCTCCTTTCCTCTCTCTGTCGGTGAAGGTGCAGAAATAGAACACAGTTACCGCATTCGTCCAAGAAAATTAGAGTCCAAGTCTATAATTTGATATTTTATAGAGAACCTGAGAAACATATTCTAGGAATAAATATACATGCGTGGAGAGTTTAATACATAGCTTCAATATAACCTTAAATTCATCATATAATAGGGGTGTTGCATGTTGAGGATGGTGGTTGGGGAAGAATTCATAGATGGTGGCCGCTGGTGTTATCATGTGGCAAAATGTTTGATGACAAGAGGCAAACAATTCCGTTGACACCTAGTGTCAACGGATCCCAACTCTTTTTATAATTGTCCTTCCTTTGCATATCTATGACTTTTATTTTTCCGTTTCAGCGTTGCCAACAGGCGATTATTAAGCAATTCCAAATTCTTCTGATGGGAAGGAAACAACCAATGGGGTAGGTTTTACTCAACTTGTGTCAATTTGCATGCATTTTTTATGGCAAACACTCTTTTTTCGTCTGTTCTTTTTGCTATAATTGATCTATCGTTTTGGTTTTTGGATACTTGGGTCATTTCCTTAATTGCCTGTCTGCTTACAATTAATTGTTTGGAATGGAATGGAATGGATTGGATTGCATGTTCAAGGGTCATTCATTTTTGTGTTCCGTTTCTGCACTTATTTCAAGGTTTCTGATGCGGACTTCTATGAACACTTCGAAGCTTGGTGCAAGAAATATGGCAAAACATACTCCTCAGAGGAACATAAACGCTACAGGTTCAAACTGTTCAAGGACAACTATCCCATTAAGCCTCCTCACAAAAATGACCTTTCTCTGCAATTTCTCAATGAGAATGCTGCTGATGATCACCCAAATGGCTCCTCTCTTCCCCTAGATATCAAAGATGCCATTCATAAATATGGTTTTGGCCTCAGCAAGTACATGTGCGACATCCCGGCTCAACCCGGCACCATTTATCTGCACAACAATGGAAACCCTTTAACAGTGTAAGACTAAACTCTTCCATCCTTTCTATTCTTGATTTCTTTTTCATCTCGGTTTGCTTTCATATCTTTTGTTACGGTGGCTGTATGTTAGATTTATGCGGTAATCTCGTTAATATGCTCTATGTTTAAATGCACTTTGAGAAAGTTGTAGTTTTGAATAAGGGAAAAATGCATAAATTTATGACTACCGACGTGGATTATTTTTTTTGTACAGTCCATTAGATTCTAATACGTCAAACGCTGCATTTTTAAAACGCTTTGAAATGGACGGTGACCAATTGAATTCTTGGAGGATTAAAGTAACTGAATCGATGATCAAAGGAGATTGTGTACTGGTAATTAATACTTTCTCATCTGTACATGTTTTCTTTTATTGCCGCGTGTTATGCTTGGTTATATCACATGTTTGATGAAAAATCATTGTAGAATTTCCCAAGAAGAATTTCTAAGAGGTTTTTGATCCACAATTCTTCTTACATTAAAGTCATTGATCAAGAGTTCGGTGTACATTTTCAATGCAATTTGAAGAGTTCTAGTAGAGATTTGCATGAGAAGTTTCTTTCTGAAGGTTGGAATGATTTTGTTAGAGCCAAAAAAGTTAAGGAGGGTGATATTCTGAGGTTCACTATGGCAAATAATGGAGGAATGATGTTGGCGCAAAAGGAAGCTTCGAAGGATTAG
Protein sequence

>MS.gene52720.t1

MVMLMLINASSGMNLLINASSGMNLANGVRLPSSSRMTPPNGVRGPSSSRMNLSGGEFQIHDVGVFHRTLDYGLSRVFEGGGVGHGVNLNYRMLPIRRLRERSFIFVFRFCTYFKVSDADFYEHFEAWCKKYGKTYSSEEHKRYRFKLFKDNYPIKPPHKNDLSLQFLNENAADDHPNGSSLPLDIKDAIHKYGFGLSKYMCDIPAQPGTIYLHNNGNPLTVPLDSNTSNAAFLKRFEMDGDQLNSWRIKVTESMIKGDCVLNFPRRISKRFLIHNSSYIKVIDQEFGVHFQCNLKSSSRDLHEKFLSEGWNDFVRAKKVKEGDILRFTMANNGGMMLAQKEASKD