AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52954

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52954.t1 MTR_1g075890 81.776 653 54 3 1 588 1 653 0.0 1022
MS.gene52954.t1 MTR_3g464260 70.886 553 78 8 37 588 29 499 0.0 739
MS.gene52954.t1 MTR_3g464280 67.491 566 106 7 1 560 1 494 0.0 690
MS.gene52954.t1 MTR_5g071070 53.185 675 220 15 1 587 1 667 0.0 623
MS.gene52954.t1 MTR_5g071070 53.120 593 184 14 81 587 1 585 0.0 540
MS.gene52954.t1 MTR_5g082830 46.177 654 239 16 19 582 13 643 3.45e-180 525
MS.gene52954.t1 MTR_7g092070 40.429 653 267 16 33 582 47 680 9.76e-142 428
MS.gene52954.t1 MTR_3g070880 44.618 576 194 18 31 579 8 485 4.20e-138 412
MS.gene52954.t1 MTR_3g464290 56.813 433 139 9 177 587 54 460 1.01e-134 401
MS.gene52954.t1 MTR_3g029590 37.538 666 285 18 30 584 42 687 1.00e-126 389
MS.gene52954.t1 MTR_3g464270 54.987 371 132 7 222 578 8 357 2.94e-122 365
MS.gene52954.t1 MTR_1g050438 40.558 466 221 11 33 451 15 471 3.48e-102 321
MS.gene52954.t1 MTR_0728s0020 40.558 466 221 11 33 451 31 487 1.01e-101 321
MS.gene52954.t1 MTR_3g435590 46.814 361 175 5 30 374 29 388 4.84e-101 315
MS.gene52954.t1 MTR_3g435680 41.096 292 136 4 118 378 26 312 3.00e-65 219
MS.gene52954.t1 MTR_8g102100 53.659 164 70 1 219 376 77 240 3.88e-55 191
MS.gene52954.t1 MTR_6g090380 69.159 107 33 0 219 325 99 205 6.20e-53 185
MS.gene52954.t1 MTR_3g103960 54.658 161 61 4 187 344 25 176 1.93e-51 178
MS.gene52954.t1 MTR_2g090605 61.261 111 43 0 223 333 77 187 2.25e-48 174
MS.gene52954.t1 MTR_4g078660 57.944 107 45 0 219 325 56 162 6.26e-47 167
MS.gene52954.t1 MTR_1g081420 75.806 62 8 1 478 532 167 228 5.25e-20 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52954.t1 AT5G58620 49.338 604 240 20 21 579 2 584 3.39e-180 522
MS.gene52954.t1 AT3G55980 45.896 597 255 14 1 579 1 547 5.14e-163 478
MS.gene52954.t1 AT3G55980 45.896 597 255 14 1 579 68 614 3.54e-162 478
MS.gene52954.t1 AT2G40140 45.896 597 258 16 4 579 3 555 9.56e-160 470
MS.gene52954.t1 AT2G40140 45.896 597 258 16 4 579 3 555 9.56e-160 470
MS.gene52954.t1 AT5G12850 41.830 612 257 20 25 547 34 635 1.25e-134 409
MS.gene52954.t1 AT2G41900 46.709 471 184 8 25 447 40 491 2.03e-133 406
MS.gene52954.t1 AT4G29190 42.128 235 101 6 212 435 68 278 1.92e-54 189
MS.gene52954.t1 AT5G07500 60.331 121 48 0 205 325 34 154 1.44e-52 180
MS.gene52954.t1 AT2G19810 62.295 122 44 1 208 327 61 182 6.74e-52 182
MS.gene52954.t1 AT2G25900 58.140 129 54 0 219 347 86 214 1.17e-51 180
MS.gene52954.t1 AT2G25900 58.140 129 54 0 219 347 86 214 1.17e-51 180
MS.gene52954.t1 AT1G03790 50.968 155 68 3 190 340 53 203 5.50e-48 172
MS.gene52954.t1 AT5G44260 56.250 128 51 2 201 327 42 165 1.61e-45 165

Find 142 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTCATTGTGCTGTTTC+TGG 0.137009 1.1:+56823725 MS.gene52954:CDS
ACCTTCTGCCTTCTCTGGTT+GGG 0.217111 1.1:+56824936 MS.gene52954:CDS
CTTGTCAAACTGGTTTGATT+AGG 0.230886 1.1:+56823411 MS.gene52954:CDS
GGTGTGTTGTCTTATATTCT+TGG 0.275343 1.1:+56823653 MS.gene52954:CDS
GAACGCCATTATATCATCTT+TGG 0.288121 1.1:-56823498 None:intergenic
TTGTCAAACTGGTTTGATTA+GGG 0.297404 1.1:+56823412 MS.gene52954:CDS
GAACTTGAAAATCGCCTTAC+AGG 0.298409 1.1:+56824637 MS.gene52954:CDS
TATATAGTACAGATGAATTT+AGG 0.309340 1.1:+56824038 MS.gene52954:CDS
GACGATTTCCTTAAGAAAAT+AGG 0.314739 1.1:+56823917 MS.gene52954:CDS
CTTGTTGTTGCTCCACCATT+TGG 0.317761 1.1:-56823943 None:intergenic
CTTATGGTTGCTGCTTTGTT+TGG 0.322501 1.1:+56823623 MS.gene52954:CDS
GAGTGCCCCTTTGTTCATCC+TGG 0.343455 1.1:+56824115 MS.gene52954:CDS
GAACGCAAACCAGCAACTTT+GGG 0.343665 1.1:+56824762 MS.gene52954:CDS
GTGTCCCTTGCCCTGAGTTT+CGG 0.346896 1.1:+56824182 MS.gene52954:CDS
AATAGAAAACCTTGTCAAAC+TGG 0.348122 1.1:+56823401 MS.gene52954:CDS
ATGGAACCTTCTGCCTTCTC+TGG 0.354986 1.1:+56824931 MS.gene52954:CDS
TGTTGATCAAATTCCATTGT+TGG 0.356576 1.1:-56825126 None:intergenic
TCTCCTTCAAATAGGCTTGC+AGG 0.358629 1.1:+56824667 MS.gene52954:CDS
AAGGATTGCCCCAAAGTTGC+TGG 0.360358 1.1:-56824771 None:intergenic
TTCAGCCAAAGATGATATAA+TGG 0.367048 1.1:+56823493 MS.gene52954:CDS
AACCTTCTGCCTTCTCTGGT+TGG 0.384069 1.1:+56824935 MS.gene52954:CDS
AGAACGCAAACCAGCAACTT+TGG 0.384644 1.1:+56824761 MS.gene52954:CDS
TTCACCAAGTGCTTCTTCAA+TGG 0.385276 1.1:+56824414 MS.gene52954:CDS
TGAAGAGAGGACACCTCTTA+TGG 0.399251 1.1:+56823607 MS.gene52954:CDS
TTGTCTTATATTCTTGGAAC+CGG 0.399584 1.1:+56823659 MS.gene52954:CDS
GTCTTGCATCTCCTTCAAAT+AGG 0.399881 1.1:+56824659 MS.gene52954:CDS
CCGCTGATGCAAACGGTAAC+CGG 0.400035 1.1:+56823810 MS.gene52954:CDS
GTGAATCAACCCAAGATTCA+TGG 0.407246 1.1:-56825089 None:intergenic
GAAGGTTGGATCAAAAGAAA+TGG 0.408777 1.1:+56823580 MS.gene52954:CDS
TTTGAATTGGTAAGATCAAA+AGG 0.409476 1.1:-56824790 None:intergenic
GCAAACCCTTCTCATGCATC+TGG 0.411034 1.1:-56824308 None:intergenic
TGTTGCGCTCAATAAAGCTT+TGG 0.411592 1.1:-56824861 None:intergenic
CTAAGAGTATCTTCGGTTCA+AGG 0.415813 1.1:+56823858 MS.gene52954:CDS
TCAAAGTGAAGCCTTGTTCA+AGG 0.417464 1.1:+56824071 MS.gene52954:CDS
CCTTCTGCCTTCTCTGGTTG+GGG 0.417819 1.1:+56824937 MS.gene52954:CDS
TGCTGCTTTGTTTGGAAGCA+AGG 0.432478 1.1:+56823631 MS.gene52954:CDS
TCTGGTTGGGGCTCTCCTGA+TGG 0.432980 1.1:+56824949 MS.gene52954:CDS
TTATGGTATGGAGGGAAGGT+TGG 0.435772 1.1:+56823566 MS.gene52954:CDS
CAAGGACTTATACTCATGAT+TGG 0.436359 1.1:+56824089 MS.gene52954:CDS
TGATGCAATCACATTTGAAT+TGG 0.437985 1.1:-56824803 None:intergenic
TATATTCCATTCTTTATGTC+AGG 0.439563 1.1:-56824019 None:intergenic
GTCAGGTAGGGATGGATCAA+TGG 0.440308 1.1:-56824002 None:intergenic
AGTGCCCCTTTGTTCATCCT+GGG 0.442388 1.1:+56824116 MS.gene52954:CDS
AACAAAGCAGCAACCATAAG+AGG 0.442942 1.1:-56823620 None:intergenic
ACCGAGCGTGCGGCTCAGAT+AGG 0.449079 1.1:+56823696 MS.gene52954:CDS
ATTGAGTTCATTGCCGGGGA+TGG 0.450856 1.1:-56824986 None:intergenic
TTCTGCTAGCTCAGTTGCCA+TGG 0.451503 1.1:+56824912 MS.gene52954:CDS
TCGGTTTCTAAGAGTATCTT+CGG 0.453417 1.1:+56823851 MS.gene52954:CDS
GGAAGGGATCATGCAACAAA+GGG 0.458959 1.1:+56824203 MS.gene52954:CDS
ACTCCTGCAAGCCTATTTGA+AGG 0.462316 1.1:-56824670 None:intergenic
CATGATCCCTTCCGAAACTC+AGG 0.476678 1.1:-56824193 None:intergenic
CCCTATCTGAGCCGCACGCT+CGG 0.476697 1.1:-56823697 None:intergenic
GTTGATTCACTTGTGAATGA+TGG 0.479955 1.1:+56825102 MS.gene52954:CDS
TCCATTCTTTATGTCAGGTA+GGG 0.481887 1.1:-56824014 None:intergenic
TTCTTTATGTCAGGTAGGGA+TGG 0.483088 1.1:-56824010 None:intergenic
AAGGTTGGATCAAAAGAAAT+GGG 0.484525 1.1:+56823581 MS.gene52954:CDS
TACAACGGTCGAAGCTCCTC+TGG 0.485266 1.1:-56824346 None:intergenic
GCAGCATCATCGCCTACGGC+TGG 0.487982 1.1:+56824505 MS.gene52954:CDS
CGACCGTTGTATGCTTCTAC+CGG 0.490079 1.1:+56824358 MS.gene52954:CDS
GAAAATAGGTTTCCAAATGG+TGG 0.491205 1.1:+56823931 MS.gene52954:CDS
CTTCTCGGCATCTGAAGGGT+AGG 0.494265 1.1:-56824568 None:intergenic
ATCTGCTTCTCGGCATCTGA+AGG 0.497474 1.1:-56824573 None:intergenic
AGCCTTGTTCTGTATTGAGC+AGG 0.498591 1.1:-56824271 None:intergenic
GGGTGAAGGTAGAGCAGAAC+CGG 0.500946 1.1:-56824377 None:intergenic
CCCTTGCCCTGAGTTTCGGA+AGG 0.503997 1.1:+56824186 MS.gene52954:CDS
GAAGTAGGGTTATGGTATGG+AGG 0.508079 1.1:+56823557 MS.gene52954:CDS
TCCCTACCTGACATAAAGAA+TGG 0.512480 1.1:+56824013 MS.gene52954:CDS
TAAGAAAATAGGTTTCCAAA+TGG 0.517234 1.1:+56823928 MS.gene52954:CDS
GCTTTGGCTCCGCTTCGAAA+AGG 0.520561 1.1:-56824845 None:intergenic
TCAGGTAGGGATGGATCAAT+GGG 0.521506 1.1:-56824001 None:intergenic
GTGCAGTGACTTGATTGTCT+CGG 0.522663 1.1:+56823832 MS.gene52954:CDS
CCCTTCCGAAACTCAGGGCA+AGG 0.525679 1.1:-56824187 None:intergenic
GATCATGATGTTGATGAAGT+AGG 0.526063 1.1:+56823542 MS.gene52954:CDS
ATGTTGATGAAGTAGGGTTA+TGG 0.527912 1.1:+56823549 MS.gene52954:CDS
GTATCTTCGGTTCAAGGAAG+AGG 0.528667 1.1:+56823864 MS.gene52954:CDS
CCGGTTACCGTTTGCATCAG+CGG 0.529093 1.1:-56823810 None:intergenic
GCTGCTTTGTTTGGAAGCAA+GGG 0.529208 1.1:+56823632 MS.gene52954:CDS
ATCATGATGTTGATGAAGTA+GGG 0.530587 1.1:+56823543 MS.gene52954:CDS
AAGGAGATGCAAGACCTGTA+AGG 0.541933 1.1:-56824651 None:intergenic
AGGAGAGCCCCAACCAGAGA+AGG 0.547335 1.1:-56824944 None:intergenic
CCGAGCGTGCGGCTCAGATA+GGG 0.547437 1.1:+56823697 MS.gene52954:CDS
CTCCTGATGGAAAATTAGAC+TGG 0.548612 1.1:+56824962 MS.gene52954:CDS
CGGAAGGGATCATGCAACAA+AGG 0.550435 1.1:+56824202 MS.gene52954:CDS
CAGAAGTAGCACTTCAACAA+TGG 0.550435 1.1:+56825026 MS.gene52954:CDS
TTCTCGGCATCTGAAGGGTA+GGG 0.550744 1.1:-56824567 None:intergenic
AGGGTTATGGTATGGAGGGA+AGG 0.551137 1.1:+56823562 MS.gene52954:CDS
AAGTAGGGTTATGGTATGGA+GGG 0.556843 1.1:+56823558 MS.gene52954:CDS
TTCATCCTGGGGAAAATGCA+AGG 0.557730 1.1:+56824128 MS.gene52954:CDS
GTTAGTTCCGCTGATGCAAA+CGG 0.558347 1.1:+56823803 MS.gene52954:CDS
TCGGTTAACATCAACGCGGC+CGG 0.559271 1.1:-56823678 None:intergenic
ATCTGCAGCATCATCGCCTA+CGG 0.562339 1.1:+56824501 MS.gene52954:CDS
AAATTAGACTGGTCCATCCC+CGG 0.564430 1.1:+56824973 MS.gene52954:CDS
GGTGAATTTGAATATGATGT+GGG 0.570481 1.1:-56824397 None:intergenic
GCAATGAACTCAATAAAATG+AGG 0.575881 1.1:+56824995 MS.gene52954:CDS
TTCCATTCTTTATGTCAGGT+AGG 0.576271 1.1:-56824015 None:intergenic
GTGCCCCTTTGTTCATCCTG+GGG 0.580017 1.1:+56824117 MS.gene52954:CDS
CATGTGTAATGATATTTCAT+CGG 0.580467 1.1:-56824160 None:intergenic
TTGATTAGGGAAAATGAATG+TGG 0.584217 1.1:+56823425 MS.gene52954:CDS
ATGAAACCAGATGCATGAGA+AGG 0.586951 1.1:+56824302 MS.gene52954:CDS
CTAATCAAACCAGTTTGACA+AGG 0.588552 1.1:-56823410 None:intergenic
AGAGAAGGCAGAAGGTTCCA+TGG 0.589015 1.1:-56824929 None:intergenic
TGAAACCAGATGCATGAGAA+GGG 0.591472 1.1:+56824303 MS.gene52954:CDS
TTGTTCTGCTGCTTCTGCCG+AGG 0.591938 1.1:+56823748 MS.gene52954:CDS
CCCCAACCAGAGAAGGCAGA+AGG 0.594817 1.1:-56824937 None:intergenic
CCTTGCCCTGAGTTTCGGAA+GGG 0.598605 1.1:+56824187 MS.gene52954:CDS
ATACAGAACAAGGCTTTGCA+AGG 0.598747 1.1:+56824279 MS.gene52954:CDS
GTAGGCGATGATGCTGCAGA+TGG 0.600318 1.1:-56824499 None:intergenic
TGCCACATGGTTCCAGCCGT+AGG 0.601454 1.1:-56824517 None:intergenic
TGATGCACTTGTATTGATGT+CGG 0.604850 1.1:-56824739 None:intergenic
GATGAAGTAGGGTTATGGTA+TGG 0.604921 1.1:+56823554 MS.gene52954:CDS
GAATCCATTGAAGAAGCACT+TGG 0.606204 1.1:-56824418 None:intergenic
GTGGAGCAACAACAAGATGT+AGG 0.606526 1.1:+56823950 MS.gene52954:CDS
TTGGCTGAAAACTCAAGCAA+AGG 0.608890 1.1:-56823479 None:intergenic
TGGTGAATTTGAATATGATG+TGG 0.620600 1.1:-56824398 None:intergenic
TCTGCTTCTCGGCATCTGAA+GGG 0.621299 1.1:-56824572 None:intergenic
ATGGCAACTGAGCTAGCAGA+AGG 0.621567 1.1:-56824910 None:intergenic
AAGAAATGGGATATGAAGAG+AGG 0.624986 1.1:+56823594 MS.gene52954:CDS
AACGCAAACCAGCAACTTTG+GGG 0.627454 1.1:+56824763 MS.gene52954:CDS
AAGCAAAAGTTTGACAACCT+CGG 0.631058 1.1:-56823765 None:intergenic
TGAGTATAAGTCCTTGAACA+AGG 0.635355 1.1:-56824082 None:intergenic
ATCCTGCTCAATACAGAACA+AGG 0.635511 1.1:+56824269 MS.gene52954:CDS
AATGATATTTCATCGGATCA+CGG 0.635978 1.1:-56824153 None:intergenic
CTGAATCTGAGTCTGCCACA+TGG 0.636502 1.1:-56824530 None:intergenic
TTTGAATATGATGTGGGTGA+AGG 0.636666 1.1:-56824391 None:intergenic
TGTGAATGATGGTCCAACAA+TGG 0.642483 1.1:+56825113 MS.gene52954:CDS
GCAGATTGTATCAAAGAAGA+CGG 0.643659 1.1:-56824457 None:intergenic
CCTTCCGAAACTCAGGGCAA+GGG 0.646387 1.1:-56824186 None:intergenic
AGACAATCAAGTCACTGCAC+CGG 0.647436 1.1:-56823829 None:intergenic
AAAACAAAAGTCATGTCCAA+CGG 0.647905 1.1:+56823374 None:intergenic
GTTGATGTTAACCGAGCGTG+CGG 0.649710 1.1:+56823686 MS.gene52954:CDS
GATGCTGCAGATGGAGTCAA+AGG 0.650089 1.1:-56824490 None:intergenic
ATGATCCCTTCCGAAACTCA+GGG 0.652947 1.1:-56824192 None:intergenic
TCAAGGAAGAGGATACTACA+AGG 0.674650 1.1:+56823875 MS.gene52954:CDS
ACAAGGCAATGTTGATGACG+AGG 0.685237 1.1:+56823892 MS.gene52954:CDS
CGCCTACGGCTGGAACCATG+TGG 0.694097 1.1:+56824515 MS.gene52954:CDS
GCTGCAGATGGAGTCAAAGG+TGG 0.696337 1.1:-56824487 None:intergenic
TTTCCCCAGGATGAACAAAG+GGG 0.706386 1.1:-56824120 None:intergenic
GAAGGGATCATGCAACAAAG+GGG 0.715610 1.1:+56824204 MS.gene52954:CDS
AGAAACAGCACAATGAAGAG+CGG 0.722067 1.1:-56823723 None:intergenic
GATGCTTGTGAATATGCACA+TGG 0.754358 1.1:+56824226 MS.gene52954:CDS
GAACCGGTAGAAGCATACAA+CGG 0.780700 1.1:-56824361 None:intergenic
ACGCTCGGTTAACATCAACG+CGG 0.858999 1.1:-56823682 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAGTACAGATGAATTT+AGG + chr1.1:56824038-56824057 MS.gene52954:CDS 20.0%
! CATGTGTAATGATATTTCAT+CGG - chr1.1:56824163-56824182 None:intergenic 25.0%
! TAAGAAAATAGGTTTCCAAA+TGG + chr1.1:56823928-56823947 MS.gene52954:CDS 25.0%
! TATATTCCATTCTTTATGTC+AGG - chr1.1:56824022-56824041 None:intergenic 25.0%
! TCATGGCTTAAAAATATATC+TGG - chr1.1:56825075-56825094 None:intergenic 25.0%
! TTTGAATTGGTAAGATCAAA+AGG - chr1.1:56824793-56824812 None:intergenic 25.0%
!! ACTAACCTTGAAAACATTTT+CGG + chr1.1:56824700-56824719 MS.gene52954:CDS 25.0%
!! TTTGGAAACCTATTTTCTTA+AGG - chr1.1:56823928-56823947 None:intergenic 25.0%
!!! AAAATGTTTTCAAGGTTAGT+AGG - chr1.1:56824700-56824719 None:intergenic 25.0%
!!! ATTTTTAAGCCATGAATCTT+GGG + chr1.1:56825080-56825099 MS.gene52954:CDS 25.0%
!!! TATTTTTAAGCCATGAATCT+TGG + chr1.1:56825079-56825098 MS.gene52954:CDS 25.0%
AAGGTTGGATCAAAAGAAAT+GGG + chr1.1:56823581-56823600 MS.gene52954:CDS 30.0%
AATAGAAAACCTTGTCAAAC+TGG + chr1.1:56823401-56823420 MS.gene52954:CDS 30.0%
AATGATATTTCATCGGATCA+CGG - chr1.1:56824156-56824175 None:intergenic 30.0%
GACGATTTCCTTAAGAAAAT+AGG + chr1.1:56823917-56823936 MS.gene52954:CDS 30.0%
GCAATGAACTCAATAAAATG+AGG + chr1.1:56824995-56825014 MS.gene52954:CDS 30.0%
GGTGAATTTGAATATGATGT+GGG - chr1.1:56824400-56824419 None:intergenic 30.0%
TGATGCAATCACATTTGAAT+TGG - chr1.1:56824806-56824825 None:intergenic 30.0%
TGGTGAATTTGAATATGATG+TGG - chr1.1:56824401-56824420 None:intergenic 30.0%
TGTTGATCAAATTCCATTGT+TGG - chr1.1:56825129-56825148 None:intergenic 30.0%
TTCAGCCAAAGATGATATAA+TGG + chr1.1:56823493-56823512 MS.gene52954:CDS 30.0%
TTGATTAGGGAAAATGAATG+TGG + chr1.1:56823425-56823444 MS.gene52954:CDS 30.0%
TTGTCTTATATTCTTGGAAC+CGG + chr1.1:56823659-56823678 MS.gene52954:CDS 30.0%
! ATCATGATGTTGATGAAGTA+GGG + chr1.1:56823543-56823562 MS.gene52954:CDS 30.0%
! ATTTTATTGAGTTCATTGCC+GGG - chr1.1:56824994-56825013 None:intergenic 30.0%
! CATTTTATTGAGTTCATTGC+CGG - chr1.1:56824995-56825014 None:intergenic 30.0%
! CTAACCTTGAAAACATTTTC+GGG + chr1.1:56824701-56824720 MS.gene52954:CDS 30.0%
!! CACATGGTATTTTTGAATGT+TGG + chr1.1:56824242-56824261 MS.gene52954:CDS 30.0%
!! TTGTCAAACTGGTTTGATTA+GGG + chr1.1:56823412-56823431 MS.gene52954:CDS 30.0%
AAGAAATGGGATATGAAGAG+AGG + chr1.1:56823594-56823613 MS.gene52954:CDS 35.0%
AAGCAAAAGTTTGACAACCT+CGG - chr1.1:56823768-56823787 None:intergenic 35.0%
CAAGGACTTATACTCATGAT+TGG + chr1.1:56824089-56824108 MS.gene52954:CDS 35.0%
CTAATCAAACCAGTTTGACA+AGG - chr1.1:56823413-56823432 None:intergenic 35.0%
GAAAATAGGTTTCCAAATGG+TGG + chr1.1:56823931-56823950 MS.gene52954:CDS 35.0%
GAACGCCATTATATCATCTT+TGG - chr1.1:56823501-56823520 None:intergenic 35.0%
GAAGGTTGGATCAAAAGAAA+TGG + chr1.1:56823580-56823599 MS.gene52954:CDS 35.0%
GCAGATTGTATCAAAGAAGA+CGG - chr1.1:56824460-56824479 None:intergenic 35.0%
GGTGTGTTGTCTTATATTCT+TGG + chr1.1:56823653-56823672 MS.gene52954:CDS 35.0%
TCCATTCTTTATGTCAGGTA+GGG - chr1.1:56824017-56824036 None:intergenic 35.0%
TGAGTATAAGTCCTTGAACA+AGG - chr1.1:56824085-56824104 None:intergenic 35.0%
TTCCATTCTTTATGTCAGGT+AGG - chr1.1:56824018-56824037 None:intergenic 35.0%
TTTGAATATGATGTGGGTGA+AGG - chr1.1:56824394-56824413 None:intergenic 35.0%
! ATGACCCGAAAATGTTTTCA+AGG - chr1.1:56824708-56824727 None:intergenic 35.0%
! ATGTTGATGAAGTAGGGTTA+TGG + chr1.1:56823549-56823568 MS.gene52954:CDS 35.0%
! GATCATGATGTTGATGAAGT+AGG + chr1.1:56823542-56823561 MS.gene52954:CDS 35.0%
! GTTGATTCACTTGTGAATGA+TGG + chr1.1:56825102-56825121 MS.gene52954:CDS 35.0%
! TGATGCACTTGTATTGATGT+CGG - chr1.1:56824742-56824761 None:intergenic 35.0%
! TTTTATTGAGTTCATTGCCG+GGG - chr1.1:56824993-56825012 None:intergenic 35.0%
!! CTTGTCAAACTGGTTTGATT+AGG + chr1.1:56823411-56823430 MS.gene52954:CDS 35.0%
!! TCGGTTTCTAAGAGTATCTT+CGG + chr1.1:56823851-56823870 MS.gene52954:CDS 35.0%
!!! GCAGTTTTAAATCTGCTTCT+CGG - chr1.1:56824586-56824605 None:intergenic 35.0%
AACAAAGCAGCAACCATAAG+AGG - chr1.1:56823623-56823642 None:intergenic 40.0%
AAGTAGGGTTATGGTATGGA+GGG + chr1.1:56823558-56823577 MS.gene52954:CDS 40.0%
AGAAACAGCACAATGAAGAG+CGG - chr1.1:56823726-56823745 None:intergenic 40.0%
ATACAGAACAAGGCTTTGCA+AGG + chr1.1:56824279-56824298 MS.gene52954:CDS 40.0%
ATCCTGCTCAATACAGAACA+AGG + chr1.1:56824269-56824288 MS.gene52954:CDS 40.0%
ATGAAACCAGATGCATGAGA+AGG + chr1.1:56824302-56824321 MS.gene52954:CDS 40.0%
CAGAAGTAGCACTTCAACAA+TGG + chr1.1:56825026-56825045 MS.gene52954:CDS 40.0%
CTCCTGATGGAAAATTAGAC+TGG + chr1.1:56824962-56824981 MS.gene52954:CDS 40.0%
GAACTTGAAAATCGCCTTAC+AGG + chr1.1:56824637-56824656 MS.gene52954:CDS 40.0%
GATGAAGTAGGGTTATGGTA+TGG + chr1.1:56823554-56823573 MS.gene52954:CDS 40.0%
GATGCTTGTGAATATGCACA+TGG + chr1.1:56824226-56824245 MS.gene52954:CDS 40.0%
GTCTTGCATCTCCTTCAAAT+AGG + chr1.1:56824659-56824678 MS.gene52954:CDS 40.0%
GTGAATCAACCCAAGATTCA+TGG - chr1.1:56825092-56825111 None:intergenic 40.0%
TCAAGGAAGAGGATACTACA+AGG + chr1.1:56823875-56823894 MS.gene52954:CDS 40.0%
TCCCTACCTGACATAAAGAA+TGG + chr1.1:56824013-56824032 MS.gene52954:CDS 40.0%
TGAAACCAGATGCATGAGAA+GGG + chr1.1:56824303-56824322 MS.gene52954:CDS 40.0%
TGTGAATGATGGTCCAACAA+TGG + chr1.1:56825113-56825132 MS.gene52954:CDS 40.0%
TGTTGCGCTCAATAAAGCTT+TGG - chr1.1:56824864-56824883 None:intergenic 40.0%
TTCACCAAGTGCTTCTTCAA+TGG + chr1.1:56824414-56824433 MS.gene52954:CDS 40.0%
TTCTTTATGTCAGGTAGGGA+TGG - chr1.1:56824013-56824032 None:intergenic 40.0%
TTGGCTGAAAACTCAAGCAA+AGG - chr1.1:56823482-56823501 None:intergenic 40.0%
! AGGTTTTCTATTCGAACCGT+TGG - chr1.1:56823393-56823412 None:intergenic 40.0%
! ATTTTCCCCAGGATGAACAA+AGG - chr1.1:56824125-56824144 None:intergenic 40.0%
! GACCAGTCTAATTTTCCATC+AGG - chr1.1:56824967-56824986 None:intergenic 40.0%
! TTTTCCCCAGGATGAACAAA+GGG - chr1.1:56824124-56824143 None:intergenic 40.0%
!! CTAAGAGTATCTTCGGTTCA+AGG + chr1.1:56823858-56823877 MS.gene52954:CDS 40.0%
!! CTTATGGTTGCTGCTTTGTT+TGG + chr1.1:56823623-56823642 MS.gene52954:CDS 40.0%
!! GAATCCATTGAAGAAGCACT+TGG - chr1.1:56824421-56824440 None:intergenic 40.0%
!! TCAAAGTGAAGCCTTGTTCA+AGG + chr1.1:56824071-56824090 MS.gene52954:CDS 40.0%
AACGCAAACCAGCAACTTTG+GGG + chr1.1:56824763-56824782 MS.gene52954:CDS 45.0%
AAGGAGATGCAAGACCTGTA+AGG - chr1.1:56824654-56824673 None:intergenic 45.0%
ACTCCTGCAAGCCTATTTGA+AGG - chr1.1:56824673-56824692 None:intergenic 45.0%
AGAACGCAAACCAGCAACTT+TGG + chr1.1:56824761-56824780 MS.gene52954:CDS 45.0%
AGACAATCAAGTCACTGCAC+CGG - chr1.1:56823832-56823851 None:intergenic 45.0%
ATGATCCCTTCCGAAACTCA+GGG - chr1.1:56824195-56824214 None:intergenic 45.0%
GAACGCAAACCAGCAACTTT+GGG + chr1.1:56824762-56824781 MS.gene52954:CDS 45.0%
GAAGGGATCATGCAACAAAG+GGG + chr1.1:56824204-56824223 MS.gene52954:CDS 45.0%
GAAGTAGGGTTATGGTATGG+AGG + chr1.1:56823557-56823576 MS.gene52954:CDS 45.0%
GGAAGGGATCATGCAACAAA+GGG + chr1.1:56824203-56824222 MS.gene52954:CDS 45.0%
GTATCTTCGGTTCAAGGAAG+AGG + chr1.1:56823864-56823883 MS.gene52954:CDS 45.0%
GTGCAGTGACTTGATTGTCT+CGG + chr1.1:56823832-56823851 MS.gene52954:CDS 45.0%
GTGGAGCAACAACAAGATGT+AGG + chr1.1:56823950-56823969 MS.gene52954:CDS 45.0%
GTTAGTTCCGCTGATGCAAA+CGG + chr1.1:56823803-56823822 MS.gene52954:CDS 45.0%
TCAGGTAGGGATGGATCAAT+GGG - chr1.1:56824004-56824023 None:intergenic 45.0%
TCTCCTTCAAATAGGCTTGC+AGG + chr1.1:56824667-56824686 MS.gene52954:CDS 45.0%
TGAAGAGAGGACACCTCTTA+TGG + chr1.1:56823607-56823626 MS.gene52954:CDS 45.0%
TTATGGTATGGAGGGAAGGT+TGG + chr1.1:56823566-56823585 MS.gene52954:CDS 45.0%
TTCATCCTGGGGAAAATGCA+AGG + chr1.1:56824128-56824147 MS.gene52954:CDS 45.0%
TTTCCCCAGGATGAACAAAG+GGG - chr1.1:56824123-56824142 None:intergenic 45.0%
! AAATTAGACTGGTCCATCCC+CGG + chr1.1:56824973-56824992 MS.gene52954:CDS 45.0%
! GAACCGGTAGAAGCATACAA+CGG - chr1.1:56824364-56824383 None:intergenic 45.0%
!! ACAAGGCAATGTTGATGACG+AGG + chr1.1:56823892-56823911 MS.gene52954:CDS 45.0%
!! AGCCTTGTTCTGTATTGAGC+AGG - chr1.1:56824274-56824293 None:intergenic 45.0%
!! CTTGTTGTTGCTCCACCATT+TGG - chr1.1:56823946-56823965 None:intergenic 45.0%
!! CTTTTTCGCTCACAAACCAG+AGG + chr1.1:56824330-56824349 MS.gene52954:CDS 45.0%
!! GCTCTTCATTGTGCTGTTTC+TGG + chr1.1:56823725-56823744 MS.gene52954:CDS 45.0%
!! GCTGCTTTGTTTGGAAGCAA+GGG + chr1.1:56823632-56823651 MS.gene52954:CDS 45.0%
!! TGCTGCTTTGTTTGGAAGCA+AGG + chr1.1:56823631-56823650 MS.gene52954:CDS 45.0%
!!! GAGTTGATGCCTTTTCGAAG+CGG + chr1.1:56824836-56824855 MS.gene52954:CDS 45.0%
AACCTTCTGCCTTCTCTGGT+TGG + chr1.1:56824935-56824954 MS.gene52954:CDS 50.0%
AAGGATTGCCCCAAAGTTGC+TGG - chr1.1:56824774-56824793 None:intergenic 50.0%
ACCTTCTGCCTTCTCTGGTT+GGG + chr1.1:56824936-56824955 MS.gene52954:CDS 50.0%
ACGCTCGGTTAACATCAACG+CGG - chr1.1:56823685-56823704 None:intergenic 50.0%
AGAGAAGGCAGAAGGTTCCA+TGG - chr1.1:56824932-56824951 None:intergenic 50.0%
AGGGTTATGGTATGGAGGGA+AGG + chr1.1:56823562-56823581 MS.gene52954:CDS 50.0%
AGTGCCCCTTTGTTCATCCT+GGG + chr1.1:56824116-56824135 MS.gene52954:CDS 50.0%
ATCTGCAGCATCATCGCCTA+CGG + chr1.1:56824501-56824520 MS.gene52954:CDS 50.0%
ATCTGCTTCTCGGCATCTGA+AGG - chr1.1:56824576-56824595 None:intergenic 50.0%
ATGGAACCTTCTGCCTTCTC+TGG + chr1.1:56824931-56824950 MS.gene52954:CDS 50.0%
ATGGCAACTGAGCTAGCAGA+AGG - chr1.1:56824913-56824932 None:intergenic 50.0%
ATTGAGTTCATTGCCGGGGA+TGG - chr1.1:56824989-56825008 None:intergenic 50.0%
CATGATCCCTTCCGAAACTC+AGG - chr1.1:56824196-56824215 None:intergenic 50.0%
CGACCGTTGTATGCTTCTAC+CGG + chr1.1:56824358-56824377 MS.gene52954:CDS 50.0%
CGGAAGGGATCATGCAACAA+AGG + chr1.1:56824202-56824221 MS.gene52954:CDS 50.0%
CTGAATCTGAGTCTGCCACA+TGG - chr1.1:56824533-56824552 None:intergenic 50.0%
GATGCTGCAGATGGAGTCAA+AGG - chr1.1:56824493-56824512 None:intergenic 50.0%
GCAAACCCTTCTCATGCATC+TGG - chr1.1:56824311-56824330 None:intergenic 50.0%
GTCAGGTAGGGATGGATCAA+TGG - chr1.1:56824005-56824024 None:intergenic 50.0%
GTTGATGTTAACCGAGCGTG+CGG + chr1.1:56823686-56823705 MS.gene52954:CDS 50.0%
TCTGCTTCTCGGCATCTGAA+GGG - chr1.1:56824575-56824594 None:intergenic 50.0%
TTCTCGGCATCTGAAGGGTA+GGG - chr1.1:56824570-56824589 None:intergenic 50.0%
TTCTGCTAGCTCAGTTGCCA+TGG + chr1.1:56824912-56824931 MS.gene52954:CDS 50.0%
CCGCTGATGCAAACGGTAAC+CGG + chr1.1:56823810-56823829 MS.gene52954:CDS 55.0%
CCGGTTACCGTTTGCATCAG+CGG - chr1.1:56823813-56823832 None:intergenic 55.0%
CCTTCCGAAACTCAGGGCAA+GGG - chr1.1:56824189-56824208 None:intergenic 55.0%
CCTTCTGCCTTCTCTGGTTG+GGG + chr1.1:56824937-56824956 MS.gene52954:CDS 55.0%
CCTTGCCCTGAGTTTCGGAA+GGG + chr1.1:56824187-56824206 MS.gene52954:CDS 55.0%
CTTCTCGGCATCTGAAGGGT+AGG - chr1.1:56824571-56824590 None:intergenic 55.0%
GAGTGCCCCTTTGTTCATCC+TGG + chr1.1:56824115-56824134 MS.gene52954:CDS 55.0%
GCTGCAGATGGAGTCAAAGG+TGG - chr1.1:56824490-56824509 None:intergenic 55.0%
GGGTGAAGGTAGAGCAGAAC+CGG - chr1.1:56824380-56824399 None:intergenic 55.0%
GTAGGCGATGATGCTGCAGA+TGG - chr1.1:56824502-56824521 None:intergenic 55.0%
GTGCCCCTTTGTTCATCCTG+GGG + chr1.1:56824117-56824136 MS.gene52954:CDS 55.0%
GTGTCCCTTGCCCTGAGTTT+CGG + chr1.1:56824182-56824201 MS.gene52954:CDS 55.0%
TACAACGGTCGAAGCTCCTC+TGG - chr1.1:56824349-56824368 None:intergenic 55.0%
TCGGTTAACATCAACGCGGC+CGG - chr1.1:56823681-56823700 None:intergenic 55.0%
! GCTTTGGCTCCGCTTCGAAA+AGG - chr1.1:56824848-56824867 None:intergenic 55.0%
! TTGTTCTGCTGCTTCTGCCG+AGG + chr1.1:56823748-56823767 MS.gene52954:CDS 55.0%
AGGAGAGCCCCAACCAGAGA+AGG - chr1.1:56824947-56824966 None:intergenic 60.0%
CCCCAACCAGAGAAGGCAGA+AGG - chr1.1:56824940-56824959 None:intergenic 60.0%
CCCTTCCGAAACTCAGGGCA+AGG - chr1.1:56824190-56824209 None:intergenic 60.0%
CCCTTGCCCTGAGTTTCGGA+AGG + chr1.1:56824186-56824205 MS.gene52954:CDS 60.0%
TCTGGTTGGGGCTCTCCTGA+TGG + chr1.1:56824949-56824968 MS.gene52954:CDS 60.0%
TGCCACATGGTTCCAGCCGT+AGG - chr1.1:56824520-56824539 None:intergenic 60.0%
ACCGAGCGTGCGGCTCAGAT+AGG + chr1.1:56823696-56823715 MS.gene52954:CDS 65.0%
CCCTATCTGAGCCGCACGCT+CGG - chr1.1:56823700-56823719 None:intergenic 65.0%
CCGAGCGTGCGGCTCAGATA+GGG + chr1.1:56823697-56823716 MS.gene52954:CDS 65.0%
CGCCTACGGCTGGAACCATG+TGG + chr1.1:56824515-56824534 MS.gene52954:CDS 65.0%
GCAGCATCATCGCCTACGGC+TGG + chr1.1:56824505-56824524 MS.gene52954:CDS 65.0%
! CGGCGCCTTGCATTTTCCCC+AGG - chr1.1:56824136-56824155 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 56823386 56825152 56823386 ID=MS.gene52954
chr1.1 mRNA 56823386 56825152 56823386 ID=MS.gene52954.t1;Parent=MS.gene52954
chr1.1 exon 56823386 56825152 56823386 ID=MS.gene52954.t1.exon1;Parent=MS.gene52954.t1
chr1.1 CDS 56823386 56825152 56823386 ID=cds.MS.gene52954.t1;Parent=MS.gene52954.t1
Gene Sequence

>MS.gene52954

ATGTCCAACGGTTCGAATAGAAAACCTTGTCAAACTGGTTTGATTAGGGAAAATGAATGTGGAAGACAAGAAGAACTTCATCATAAGATTTCACCTTTGCTTGAGTTTTCAGCCAAAGATGATATAATGGCGTTCACAAATGCTGTTGAAAAAGATGATCATGATGTTGATGAAGTAGGGTTATGGTATGGAGGGAAGGTTGGATCAAAAGAAATGGGATATGAAGAGAGGACACCTCTTATGGTTGCTGCTTTGTTTGGAAGCAAGGGTGTGTTGTCTTATATTCTTGGAACCGGCCGCGTTGATGTTAACCGAGCGTGCGGCTCAGATAGGGCTACCGCTCTTCATTGTGCTGTTTCTGGTTGTTCTGCTGCTTCTGCCGAGGTTGTCAAACTTTTGCTTGATGCATCTGCAGATGTTAGTTCCGCTGATGCAAACGGTAACCGGTGCAGTGACTTGATTGTCTCGGTTTCTAAGAGTATCTTCGGTTCAAGGAAGAGGATACTACAAGGCAATGTTGATGACGAGGACGACGATTTCCTTAAGAAAATAGGTTTCCAAATGGTGGAGCAACAACAAGATGTAGGTACATCTCGAACTGAGAAGAAAGATCATCCCATTGATCCATCCCTACCTGACATAAAGAATGGAATATATAGTACAGATGAATTTAGGATGTTTACATTCAAAGTGAAGCCTTGTTCAAGGACTTATACTCATGATTGGACTGAGTGCCCCTTTGTTCATCCTGGGGAAAATGCAAGGCGCCGTGATCCGATGAAATATCATTACACATGTGTCCCTTGCCCTGAGTTTCGGAAGGGATCATGCAACAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAATGTTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGAAACCAGATGCATGAGAAGGGTTTGCTTTTTCGCTCACAAACCAGAGGAGCTTCGACCGTTGTATGCTTCTACCGGTTCTGCTCTACCTTCACCCACATCATATTCAAATTCACCAAGTGCTTCTTCAATGGATTCTTTCACATTGAGCTCTCCGTCTTCTTTGATACAATCTGCGTCGACGCCACCTTTGACTCCATCTGCAGCATCATCGCCTACGGCTGGAACCATGTGGCAGACTCAGATTCAGCTTCATGCTGCAGTCCCTACCCTTCAGATGCCGAGAAGCAGATTTAAAACTGCAATGAATGCTAGAAATAATGCTGAATTTCTCGAACTTGAAAATCGCCTTACAGGTCTTGCATCTCCTTCAAATAGGCTTGCAGGAGTGAATCCTACTAACCTTGAAAACATTTTCGGGTCATCAATACAATCTCCGACATCAATACAAGTGCATCAGAACGCAAACCAGCAACTTTGGGGCAATCCTTTTGATCTTACCAATTCAAATGTGATTGCATCATCACAATTTAGAGTTGATGCCTTTTCGAAGCGGAGCCAAAGCTTTATTGAGCGCAACAGCGTTGCGAGCTTTAATTCTGAGCTTCCTTCTGCTAGCTCAGTTGCCATGGAACCTTCTGCCTTCTCTGGTTGGGGCTCTCCTGATGGAAAATTAGACTGGTCCATCCCCGGCAATGAACTCAATAAAATGAGGAAATCTTACAGAAGTAGCACTTCAACAATGGCTGCTGCATTAAGTGTTAATGATCCAGATATATTTTTAAGCCATGAATCTTGGGTTGATTCACTTGTGAATGATGGTCCAACAATGGAATTTGATCAACATTGA
Protein sequence

>MS.gene52954.t1

MSNGSNRKPCQTGLIRENECGRQEELHHKISPLLEFSAKDDIMAFTNAVEKDDHDVDEVGLWYGGKVGSKEMGYEERTPLMVAALFGSKGVLSYILGTGRVDVNRACGSDRATALHCAVSGCSAASAEVVKLLLDASADVSSADANGNRCSDLIVSVSKSIFGSRKRILQGNVDDEDDDFLKKIGFQMVEQQQDVGTSRTEKKDHPIDPSLPDIKNGIYSTDEFRMFTFKVKPCSRTYTHDWTECPFVHPGENARRRDPMKYHYTCVPCPEFRKGSCNKGDACEYAHGIFECWLHPAQYRTRLCKDETRCMRRVCFFAHKPEELRPLYASTGSALPSPTSYSNSPSASSMDSFTLSSPSSLIQSASTPPLTPSAASSPTAGTMWQTQIQLHAAVPTLQMPRSRFKTAMNARNNAEFLELENRLTGLASPSNRLAGVNPTNLENIFGSSIQSPTSIQVHQNANQQLWGNPFDLTNSNVIASSQFRVDAFSKRSQSFIERNSVASFNSELPSASSVAMEPSAFSGWGSPDGKLDWSIPGNELNKMRKSYRSSTSTMAAALSVNDPDIFLSHESWVDSLVNDGPTMEFDQH