AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52955

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52955.t1 MTR_1g075890 89.130 460 42 2 1 452 43 502 0.0 795
MS.gene52955.t1 MTR_3g464260 76.543 405 57 5 1 404 35 402 0.0 596
MS.gene52955.t1 MTR_3g464280 66.372 452 96 4 7 456 33 430 0.0 549
MS.gene52955.t1 MTR_5g071070 55.166 542 156 12 1 458 45 583 0.0 523
MS.gene52955.t1 MTR_5g071070 54.365 504 143 12 39 458 1 501 4.59e-161 469
MS.gene52955.t1 MTR_5g082830 53.829 444 148 9 2 406 41 466 1.24e-156 460
MS.gene52955.t1 MTR_7g092070 48.408 471 170 11 2 410 58 517 8.42e-136 408
MS.gene52955.t1 MTR_3g070880 45.895 475 152 14 2 453 21 413 2.37e-127 379
MS.gene52955.t1 MTR_3g029590 42.344 529 213 15 3 451 57 573 3.44e-121 370
MS.gene52955.t1 MTR_1g050438 41.280 453 214 10 2 409 26 471 8.98e-103 318
MS.gene52955.t1 MTR_0728s0020 41.280 453 214 10 2 409 42 487 1.62e-102 319
MS.gene52955.t1 MTR_3g435590 47.399 346 165 5 3 332 44 388 1.45e-99 306
MS.gene52955.t1 MTR_3g464270 54.514 288 120 3 180 456 8 295 9.11e-98 298
MS.gene52955.t1 MTR_3g464290 55.255 333 108 7 135 452 54 360 1.53e-93 291
MS.gene52955.t1 MTR_3g435680 62.838 148 53 1 156 303 128 273 2.35e-66 218
MS.gene52955.t1 MTR_8g102100 54.268 164 69 1 177 334 77 240 5.38e-56 191
MS.gene52955.t1 MTR_6g090380 70.093 107 32 0 177 283 99 205 2.81e-54 186
MS.gene52955.t1 MTR_3g103960 54.037 161 62 4 145 302 25 176 2.03e-52 178
MS.gene52955.t1 MTR_2g090605 62.162 111 42 0 181 291 77 187 1.66e-49 174
MS.gene52955.t1 MTR_4g078660 57.944 107 45 0 177 283 56 162 1.86e-46 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52955.t1 AT5G58620 52.452 469 187 12 2 443 25 484 1.52e-156 457
MS.gene52955.t1 AT2G40140 49.573 468 199 10 2 454 44 489 1.64e-144 426
MS.gene52955.t1 AT2G40140 49.573 468 199 10 2 454 44 489 1.64e-144 426
MS.gene52955.t1 AT3G55980 48.927 466 194 10 2 451 41 478 3.09e-142 420
MS.gene52955.t1 AT3G55980 48.827 469 196 10 2 454 108 548 3.23e-141 419
MS.gene52955.t1 AT2G41900 48.206 446 164 8 6 403 63 489 4.79e-131 395
MS.gene52955.t1 AT5G12850 47.884 449 173 13 14 410 64 503 2.34e-128 388
MS.gene52955.t1 AT4G29190 40.351 285 122 10 150 422 49 297 1.06e-57 194
MS.gene52955.t1 AT2G25900 58.915 129 53 0 177 305 86 214 3.55e-53 181
MS.gene52955.t1 AT2G25900 58.915 129 53 0 177 305 86 214 3.55e-53 181
MS.gene52955.t1 AT5G07500 60.331 121 48 0 163 283 34 154 4.52e-53 179
MS.gene52955.t1 AT2G19810 63.115 122 43 1 166 285 61 182 4.60e-53 182
MS.gene52955.t1 AT1G03790 52.258 155 66 3 148 298 53 203 3.90e-50 176
MS.gene52955.t1 AT5G44260 57.812 128 49 2 159 285 42 165 2.07e-47 168

Find 118 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTCATTGTGCTGTTTC+TGG 0.119133 1.1:+56818267 MS.gene52955:CDS
GGTGTGTTGTCTTATATTCT+TGG 0.275343 1.1:+56818195 MS.gene52955:CDS
GAACTTGAAAATCGCCTTAC+AGG 0.298409 1.1:+56819179 MS.gene52955:CDS
TATATAGTACAGATGAATTT+AGG 0.309340 1.1:+56818580 MS.gene52955:CDS
GACGATTTCCTTAAGAAAAT+AGG 0.314739 1.1:+56818459 MS.gene52955:CDS
CTTGTTGTTGCTCCACCATT+TGG 0.317761 1.1:-56818485 None:intergenic
CTTATGGTTGCTGCTTTGTT+TGG 0.322501 1.1:+56818165 MS.gene52955:CDS
GAGCACAAACCAGCAACTTT+GGG 0.343665 1.1:+56819298 MS.gene52955:CDS
GTGTCCCTTGCCCCGAGTTT+CGG 0.352020 1.1:+56818724 MS.gene52955:CDS
CAAGGGCTTATTCTCATGAT+TGG 0.357705 1.1:+56818631 MS.gene52955:CDS
TCTCCTTCAAATAGGCTTGC+AGG 0.358629 1.1:+56819209 MS.gene52955:CDS
AAGGATTGCCCCAAAGTTGC+TGG 0.360358 1.1:-56819307 None:intergenic
CTTACCAATTCAAATGTGAT+TGG 0.367908 1.1:+56819335 MS.gene52955:CDS
TGATCCAATCACATTTGAAT+TGG 0.381273 1.1:-56819339 None:intergenic
AGAGCACAAACCAGCAACTT+TGG 0.387067 1.1:+56819297 MS.gene52955:CDS
GAAGGTTGGATCAAAAGAAA+TGG 0.391384 1.1:+56818122 MS.gene52955:CDS
CGACCGTTGCATGCTTCCAC+TGG 0.395037 1.1:+56818900 MS.gene52955:CDS
TGAAGAGAGGACACCTCTTA+TGG 0.399251 1.1:+56818149 MS.gene52955:CDS
TTGTCTTATATTCTTGGAAC+CGG 0.399584 1.1:+56818201 MS.gene52955:CDS
GTCTTGCATCTCCTTCAAAT+AGG 0.399881 1.1:+56819201 MS.gene52955:CDS
CCGCTCATGCAAACGGTAAC+CGG 0.401655 1.1:+56818352 MS.gene52955:CDS
TTTGAATTGGTAAGATCAAA+AGG 0.409476 1.1:-56819326 None:intergenic
CATCTGCATTCATCAAGCTT+TGG 0.411220 1.1:-56819397 None:intergenic
CTAAGAGTATCTTCGGTTCA+AGG 0.415813 1.1:+56818400 MS.gene52955:CDS
TCAAAGTGAAGCCTTGTTCA+AGG 0.431149 1.1:+56818613 MS.gene52955:CDS
TGCAACGGTCGAAGCTCCTC+TGG 0.431203 1.1:-56818888 None:intergenic
TGCTGCTTTGTTTGGAAGCA+AGG 0.432478 1.1:+56818173 MS.gene52955:CDS
GAGTGCCCCTTTGTTCAACC+TGG 0.438001 1.1:+56818657 MS.gene52955:CDS
TTCTCCCCAGGTTGAACAAA+GGG 0.438980 1.1:-56818663 None:intergenic
TATATTCCATTCTTTATGTC+AGG 0.439563 1.1:-56818561 None:intergenic
AACAAAGCAGCAACCATAAG+AGG 0.442942 1.1:-56818162 None:intergenic
ACCGAGCGTGCGGCTCAGAT+AGG 0.449079 1.1:+56818238 MS.gene52955:CDS
AAGGTTGGATCAAAAGAAAT+GGG 0.451915 1.1:+56818123 MS.gene52955:CDS
TCGGTTTCTAAGAGTATCTT+CGG 0.453417 1.1:+56818393 MS.gene52955:CDS
GGAAGGGATCATGCAACAAA+GGG 0.458959 1.1:+56818745 MS.gene52955:CDS
ACTCCTGCAAGCCTATTTGA+AGG 0.462316 1.1:-56819212 None:intergenic
TTATGGTATGGAAGGAAGGT+TGG 0.462581 1.1:+56818108 MS.gene52955:CDS
GCATGATCCCTTCCGAAACT+CGG 0.472085 1.1:-56818736 None:intergenic
CCCTATCTGAGCCGCACGCT+CGG 0.476697 1.1:-56818239 None:intergenic
CATGATCCCTTCCGAAACTC+GGG 0.480869 1.1:-56818735 None:intergenic
GTCAGGTAGGGATGGATCCA+TGG 0.481206 1.1:-56818544 None:intergenic
TCCATTCTTTATGTCAGGTA+GGG 0.481887 1.1:-56818556 None:intergenic
TTCTTTATGTCAGGTAGGGA+TGG 0.483088 1.1:-56818552 None:intergenic
CCCTTCCGAAACTCGGGGCA+AGG 0.484081 1.1:-56818729 None:intergenic
TGCCACATGGTTCCAGCCTT+AGG 0.487354 1.1:-56819059 None:intergenic
CGGCGCCTTGCATTCTCCCC+AGG 0.487495 1.1:-56818675 None:intergenic
CCCTTGCCCCGAGTTTCGGA+AGG 0.487676 1.1:+56818728 MS.gene52955:CDS
TTCACCAAGTGCTTCTTCGA+TGG 0.489966 1.1:+56818956 MS.gene52955:CDS
GAAAATAGGTTTCCAAATGG+TGG 0.491205 1.1:+56818473 MS.gene52955:CDS
GCAGCATCATCGCCTAAGGC+TGG 0.493703 1.1:+56819047 MS.gene52955:CDS
CTTCTCGGCATCTGAAGGGT+AGG 0.494265 1.1:-56819110 None:intergenic
ATCTGCTTCTCGGCATCTGA+AGG 0.497474 1.1:-56819115 None:intergenic
AGCCTTGTTCTGTATTGAGC+AGG 0.498591 1.1:-56818813 None:intergenic
AGGGTTATGGTATGGAAGGA+AGG 0.505824 1.1:+56818104 MS.gene52955:CDS
TCCCTACCTGACATAAAGAA+TGG 0.512480 1.1:+56818555 MS.gene52955:CDS
GCTTTGGCTCCGCTTCGAAA+AGG 0.514824 1.1:-56819381 None:intergenic
AGTGCCCCTTTGTTCAACCT+GGG 0.517209 1.1:+56818658 MS.gene52955:CDS
TAAGAAAATAGGTTTCCAAA+TGG 0.517234 1.1:+56818470 MS.gene52955:CDS
CAAAGTGAAGCCTTGTTCAA+GGG 0.517860 1.1:+56818614 MS.gene52955:CDS
AAGTAGGGTTATGGTATGGA+AGG 0.522426 1.1:+56818100 MS.gene52955:CDS
GTGCAGTGACTTGATTGTCT+CGG 0.522663 1.1:+56818374 MS.gene52955:CDS
ATCTGCAGCATCATCGCCTA+AGG 0.525855 1.1:+56819043 MS.gene52955:CDS
GATCATGATGTTGATGAAGT+AGG 0.526063 1.1:+56818084 MS.gene52955:CDS
GGTGAATTTGAATATGATGT+AGG 0.526620 1.1:-56818939 None:intergenic
CCGGTTACCGTTTGCATGAG+CGG 0.526654 1.1:-56818352 None:intergenic
ATGTTGATGAAGTAGGGTTA+TGG 0.527912 1.1:+56818091 MS.gene52955:CDS
GTATCTTCGGTTCAAGGAAG+AGG 0.528667 1.1:+56818406 MS.gene52955:CDS
GCTGCTTTGTTTGGAAGCAA+GGG 0.529208 1.1:+56818174 MS.gene52955:CDS
ATCATGATGTTGATGAAGTA+GGG 0.530587 1.1:+56818085 MS.gene52955:CDS
TTCAACCTGGGGAGAATGCA+AGG 0.530956 1.1:+56818670 MS.gene52955:CDS
GTTAGTTCCGCTCATGCAAA+CGG 0.541373 1.1:+56818345 MS.gene52955:CDS
AAGGAGATGCAAGACCTGTA+AGG 0.541933 1.1:-56819193 None:intergenic
CCGAGCGTGCGGCTCAGATA+GGG 0.547437 1.1:+56818239 MS.gene52955:CDS
CGGAAGGGATCATGCAACAA+AGG 0.550435 1.1:+56818744 MS.gene52955:CDS
TTCTCGGCATCTGAAGGGTA+GGG 0.550744 1.1:-56819109 None:intergenic
CACGTGTAATGATATTTCCT+CGG 0.552027 1.1:-56818702 None:intergenic
AATGATATTTCCTCGGATCA+CGG 0.552863 1.1:-56818695 None:intergenic
TCGGTTAACATCAACGCGGC+CGG 0.559271 1.1:-56818220 None:intergenic
TTCCATTCTTTATGTCAGGT+AGG 0.576271 1.1:-56818557 None:intergenic
CCTTCCGAAACTCGGGGCAA+GGG 0.578389 1.1:-56818728 None:intergenic
TGAAACTAGATGCACGAGAA+GGG 0.581662 1.1:+56818845 MS.gene52955:CDS
TTAGGCGATGATGCTGCAGA+TGG 0.582325 1.1:-56819041 None:intergenic
GTGCCCCTTTGTTCAACCTG+GGG 0.583668 1.1:+56818659 MS.gene52955:CDS
TGAAGGTAGAGCAGAACCAG+TGG 0.585309 1.1:-56818916 None:intergenic
GTGCTCTGATGCATTGATGT+CGG 0.590144 1.1:-56819281 None:intergenic
ATGAAACTAGATGCACGAGA+AGG 0.590481 1.1:+56818844 MS.gene52955:CDS
TCAGGTAGGGATGGATCCAT+GGG 0.592467 1.1:-56818543 None:intergenic
GAATCCATCGAAGAAGCACT+TGG 0.592531 1.1:-56818960 None:intergenic
ATGCAAGGCGCCGTGATCCG+AGG 0.595327 1.1:+56818685 MS.gene52955:CDS
CCTTGCCCCGAGTTTCGGAA+GGG 0.595695 1.1:+56818729 MS.gene52955:CDS
ATACAGAACAAGGCTTTGCA+AGG 0.598747 1.1:+56818821 MS.gene52955:CDS
GATGAAGTAGGGTTATGGTA+TGG 0.604921 1.1:+56818096 MS.gene52955:CDS
GTGGAGCAACAACAAGATGT+AGG 0.606526 1.1:+56818492 MS.gene52955:CDS
ATTCTCCCCAGGTTGAACAA+AGG 0.606975 1.1:-56818664 None:intergenic
TGAGAAGAAAGATTATCCCA+TGG 0.621054 1.1:+56818527 MS.gene52955:CDS
TCTGCTTCTCGGCATCTGAA+GGG 0.621299 1.1:-56819114 None:intergenic
AAGAAATGGGATATGAAGAG+AGG 0.624986 1.1:+56818136 MS.gene52955:CDS
TGAGAATAAGCCCTTGAACA+AGG 0.627841 1.1:-56818624 None:intergenic
AAGCAAAAGTTTGACAACCT+CGG 0.631058 1.1:-56818307 None:intergenic
ATCCTGCTCAATACAGAACA+AGG 0.635511 1.1:+56818811 MS.gene52955:CDS
GAACCAGTGGAAGCATGCAA+CGG 0.644293 1.1:-56818903 None:intergenic
AGACAATCAAGTCACTGCAC+CGG 0.647436 1.1:-56818371 None:intergenic
CTGAATCTGAGTCTGCCACA+TGG 0.647805 1.1:-56819072 None:intergenic
GTTGATGTTAACCGAGCGTG+CGG 0.649710 1.1:+56818228 MS.gene52955:CDS
GATGCTGCAGATGGAGTCAA+AGG 0.650089 1.1:-56819032 None:intergenic
TTTGAATATGATGTAGGTGA+AGG 0.654129 1.1:-56818933 None:intergenic
GCAGATTGTATCGAAGAAGA+CGG 0.671424 1.1:-56818999 None:intergenic
TCAAGGAAGAGGATACTACA+AGG 0.674650 1.1:+56818417 MS.gene52955:CDS
AGCACAAACCAGCAACTTTG+GGG 0.680243 1.1:+56819299 MS.gene52955:CDS
ACAAGGCAATGTTGATGACG+AGG 0.685237 1.1:+56818434 MS.gene52955:CDS
TCTCCCCAGGTTGAACAAAG+GGG 0.687449 1.1:-56818662 None:intergenic
CGCCTAAGGCTGGAACCATG+TGG 0.696210 1.1:+56819057 MS.gene52955:CDS
ATGATCCCTTCCGAAACTCG+GGG 0.698351 1.1:-56818734 None:intergenic
GCTGCAGATGGAGTCAAAGG+TGG 0.704806 1.1:-56819029 None:intergenic
GAAGGGATCATGCAACAAAG+GGG 0.715610 1.1:+56818746 MS.gene52955:CDS
AGAAACAGCACAATGAAGAG+CGG 0.722067 1.1:-56818265 None:intergenic
GATGCTTGTGAATATGCACA+TGG 0.754358 1.1:+56818768 MS.gene52955:CDS
ACGCTCGGTTAACATCAACG+CGG 0.858999 1.1:-56818224 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAGTACAGATGAATTT+AGG + chr1.1:56818580-56818599 MS.gene52955:CDS 20.0%
! TAAGAAAATAGGTTTCCAAA+TGG + chr1.1:56818470-56818489 MS.gene52955:CDS 25.0%
! TATATTCCATTCTTTATGTC+AGG - chr1.1:56818564-56818583 None:intergenic 25.0%
! TTTGAATTGGTAAGATCAAA+AGG - chr1.1:56819329-56819348 None:intergenic 25.0%
!! TTTGGAAACCTATTTTCTTA+AGG - chr1.1:56818470-56818489 None:intergenic 25.0%
AAGGTTGGATCAAAAGAAAT+GGG + chr1.1:56818123-56818142 MS.gene52955:CDS 30.0%
CTTACCAATTCAAATGTGAT+TGG + chr1.1:56819335-56819354 MS.gene52955:CDS 30.0%
GACGATTTCCTTAAGAAAAT+AGG + chr1.1:56818459-56818478 MS.gene52955:CDS 30.0%
GGTGAATTTGAATATGATGT+AGG - chr1.1:56818942-56818961 None:intergenic 30.0%
TGATCCAATCACATTTGAAT+TGG - chr1.1:56819342-56819361 None:intergenic 30.0%
TTGTCTTATATTCTTGGAAC+CGG + chr1.1:56818201-56818220 MS.gene52955:CDS 30.0%
TTTGAATATGATGTAGGTGA+AGG - chr1.1:56818936-56818955 None:intergenic 30.0%
! ATCATGATGTTGATGAAGTA+GGG + chr1.1:56818085-56818104 MS.gene52955:CDS 30.0%
!! AAAATGTTTTCAAGGCTAGT+AGG - chr1.1:56819242-56819261 None:intergenic 30.0%
!!! ACTAGCCTTGAAAACATTTT+CGG + chr1.1:56819242-56819261 MS.gene52955:CDS 30.0%
AAGAAATGGGATATGAAGAG+AGG + chr1.1:56818136-56818155 MS.gene52955:CDS 35.0%
AAGCAAAAGTTTGACAACCT+CGG - chr1.1:56818310-56818329 None:intergenic 35.0%
AATGATATTTCCTCGGATCA+CGG - chr1.1:56818698-56818717 None:intergenic 35.0%
CACGTGTAATGATATTTCCT+CGG - chr1.1:56818705-56818724 None:intergenic 35.0%
GAAAATAGGTTTCCAAATGG+TGG + chr1.1:56818473-56818492 MS.gene52955:CDS 35.0%
GAAGGTTGGATCAAAAGAAA+TGG + chr1.1:56818122-56818141 MS.gene52955:CDS 35.0%
GGTGTGTTGTCTTATATTCT+TGG + chr1.1:56818195-56818214 MS.gene52955:CDS 35.0%
TCCATTCTTTATGTCAGGTA+GGG - chr1.1:56818559-56818578 None:intergenic 35.0%
TGAGAAGAAAGATTATCCCA+TGG + chr1.1:56818527-56818546 MS.gene52955:CDS 35.0%
TTCCATTCTTTATGTCAGGT+AGG - chr1.1:56818560-56818579 None:intergenic 35.0%
! ATGACCCGAAAATGTTTTCA+AGG - chr1.1:56819250-56819269 None:intergenic 35.0%
! ATGTTGATGAAGTAGGGTTA+TGG + chr1.1:56818091-56818110 MS.gene52955:CDS 35.0%
! GATCATGATGTTGATGAAGT+AGG + chr1.1:56818084-56818103 MS.gene52955:CDS 35.0%
!! CACATGGTATTTTTGAATGC+TGG + chr1.1:56818784-56818803 MS.gene52955:CDS 35.0%
!! TCGGTTTCTAAGAGTATCTT+CGG + chr1.1:56818393-56818412 MS.gene52955:CDS 35.0%
!!! CTAGCCTTGAAAACATTTTC+GGG + chr1.1:56819243-56819262 MS.gene52955:CDS 35.0%
!!! GCAGTTTTAAATCTGCTTCT+CGG - chr1.1:56819128-56819147 None:intergenic 35.0%
AACAAAGCAGCAACCATAAG+AGG - chr1.1:56818165-56818184 None:intergenic 40.0%
AAGTAGGGTTATGGTATGGA+AGG + chr1.1:56818100-56818119 MS.gene52955:CDS 40.0%
AGAAACAGCACAATGAAGAG+CGG - chr1.1:56818268-56818287 None:intergenic 40.0%
ATACAGAACAAGGCTTTGCA+AGG + chr1.1:56818821-56818840 MS.gene52955:CDS 40.0%
ATCCTGCTCAATACAGAACA+AGG + chr1.1:56818811-56818830 MS.gene52955:CDS 40.0%
ATGAAACTAGATGCACGAGA+AGG + chr1.1:56818844-56818863 MS.gene52955:CDS 40.0%
CAAGGGCTTATTCTCATGAT+TGG + chr1.1:56818631-56818650 MS.gene52955:CDS 40.0%
CATCTGCATTCATCAAGCTT+TGG - chr1.1:56819400-56819419 None:intergenic 40.0%
GAACTTGAAAATCGCCTTAC+AGG + chr1.1:56819179-56819198 MS.gene52955:CDS 40.0%
GATGAAGTAGGGTTATGGTA+TGG + chr1.1:56818096-56818115 MS.gene52955:CDS 40.0%
GATGCTTGTGAATATGCACA+TGG + chr1.1:56818768-56818787 MS.gene52955:CDS 40.0%
GCAGATTGTATCGAAGAAGA+CGG - chr1.1:56819002-56819021 None:intergenic 40.0%
GTCTTGCATCTCCTTCAAAT+AGG + chr1.1:56819201-56819220 MS.gene52955:CDS 40.0%
TCAAGGAAGAGGATACTACA+AGG + chr1.1:56818417-56818436 MS.gene52955:CDS 40.0%
TCCCTACCTGACATAAAGAA+TGG + chr1.1:56818555-56818574 MS.gene52955:CDS 40.0%
TGAAACTAGATGCACGAGAA+GGG + chr1.1:56818845-56818864 MS.gene52955:CDS 40.0%
TGAGAATAAGCCCTTGAACA+AGG - chr1.1:56818627-56818646 None:intergenic 40.0%
TTATGGTATGGAAGGAAGGT+TGG + chr1.1:56818108-56818127 MS.gene52955:CDS 40.0%
TTCTTTATGTCAGGTAGGGA+TGG - chr1.1:56818555-56818574 None:intergenic 40.0%
!! CAAAGTGAAGCCTTGTTCAA+GGG + chr1.1:56818614-56818633 MS.gene52955:CDS 40.0%
!! CTAAGAGTATCTTCGGTTCA+AGG + chr1.1:56818400-56818419 MS.gene52955:CDS 40.0%
!! CTTATGGTTGCTGCTTTGTT+TGG + chr1.1:56818165-56818184 MS.gene52955:CDS 40.0%
!! TCAAAGTGAAGCCTTGTTCA+AGG + chr1.1:56818613-56818632 MS.gene52955:CDS 40.0%
AAGGAGATGCAAGACCTGTA+AGG - chr1.1:56819196-56819215 None:intergenic 45.0%
ACTCCTGCAAGCCTATTTGA+AGG - chr1.1:56819215-56819234 None:intergenic 45.0%
AGACAATCAAGTCACTGCAC+CGG - chr1.1:56818374-56818393 None:intergenic 45.0%
AGAGCACAAACCAGCAACTT+TGG + chr1.1:56819297-56819316 MS.gene52955:CDS 45.0%
AGCACAAACCAGCAACTTTG+GGG + chr1.1:56819299-56819318 MS.gene52955:CDS 45.0%
AGGGTTATGGTATGGAAGGA+AGG + chr1.1:56818104-56818123 MS.gene52955:CDS 45.0%
GAAGGGATCATGCAACAAAG+GGG + chr1.1:56818746-56818765 MS.gene52955:CDS 45.0%
GAGCACAAACCAGCAACTTT+GGG + chr1.1:56819298-56819317 MS.gene52955:CDS 45.0%
GGAAGGGATCATGCAACAAA+GGG + chr1.1:56818745-56818764 MS.gene52955:CDS 45.0%
GTATCTTCGGTTCAAGGAAG+AGG + chr1.1:56818406-56818425 MS.gene52955:CDS 45.0%
GTGCAGTGACTTGATTGTCT+CGG + chr1.1:56818374-56818393 MS.gene52955:CDS 45.0%
GTGGAGCAACAACAAGATGT+AGG + chr1.1:56818492-56818511 MS.gene52955:CDS 45.0%
GTTAGTTCCGCTCATGCAAA+CGG + chr1.1:56818345-56818364 MS.gene52955:CDS 45.0%
TCTCCTTCAAATAGGCTTGC+AGG + chr1.1:56819209-56819228 MS.gene52955:CDS 45.0%
TGAAGAGAGGACACCTCTTA+TGG + chr1.1:56818149-56818168 MS.gene52955:CDS 45.0%
TTCACCAAGTGCTTCTTCGA+TGG + chr1.1:56818956-56818975 MS.gene52955:CDS 45.0%
! ATTCTCCCCAGGTTGAACAA+AGG - chr1.1:56818667-56818686 None:intergenic 45.0%
! GTGCTCTGATGCATTGATGT+CGG - chr1.1:56819284-56819303 None:intergenic 45.0%
! TTCTCCCCAGGTTGAACAAA+GGG - chr1.1:56818666-56818685 None:intergenic 45.0%
!! ACAAGGCAATGTTGATGACG+AGG + chr1.1:56818434-56818453 MS.gene52955:CDS 45.0%
!! AGCCTTGTTCTGTATTGAGC+AGG - chr1.1:56818816-56818835 None:intergenic 45.0%
!! CTTGTTGTTGCTCCACCATT+TGG - chr1.1:56818488-56818507 None:intergenic 45.0%
!! GAATCCATCGAAGAAGCACT+TGG - chr1.1:56818963-56818982 None:intergenic 45.0%
!! GCTCTTCATTGTGCTGTTTC+TGG + chr1.1:56818267-56818286 MS.gene52955:CDS 45.0%
!! GCTGCTTTGTTTGGAAGCAA+GGG + chr1.1:56818174-56818193 MS.gene52955:CDS 45.0%
!! TGCTGCTTTGTTTGGAAGCA+AGG + chr1.1:56818173-56818192 MS.gene52955:CDS 45.0%
!!! GAGTTGATGCCTTTTCGAAG+CGG + chr1.1:56819372-56819391 MS.gene52955:CDS 45.0%
AAGGATTGCCCCAAAGTTGC+TGG - chr1.1:56819310-56819329 None:intergenic 50.0%
ACGCTCGGTTAACATCAACG+CGG - chr1.1:56818227-56818246 None:intergenic 50.0%
AGTGCCCCTTTGTTCAACCT+GGG + chr1.1:56818658-56818677 MS.gene52955:CDS 50.0%
ATCTGCAGCATCATCGCCTA+AGG + chr1.1:56819043-56819062 MS.gene52955:CDS 50.0%
ATCTGCTTCTCGGCATCTGA+AGG - chr1.1:56819118-56819137 None:intergenic 50.0%
ATGATCCCTTCCGAAACTCG+GGG - chr1.1:56818737-56818756 None:intergenic 50.0%
CATGATCCCTTCCGAAACTC+GGG - chr1.1:56818738-56818757 None:intergenic 50.0%
CGGAAGGGATCATGCAACAA+AGG + chr1.1:56818744-56818763 MS.gene52955:CDS 50.0%
CTGAATCTGAGTCTGCCACA+TGG - chr1.1:56819075-56819094 None:intergenic 50.0%
GATGCTGCAGATGGAGTCAA+AGG - chr1.1:56819035-56819054 None:intergenic 50.0%
GCATGATCCCTTCCGAAACT+CGG - chr1.1:56818739-56818758 None:intergenic 50.0%
GTTGATGTTAACCGAGCGTG+CGG + chr1.1:56818228-56818247 MS.gene52955:CDS 50.0%
TCAGGTAGGGATGGATCCAT+GGG - chr1.1:56818546-56818565 None:intergenic 50.0%
TCTGCTTCTCGGCATCTGAA+GGG - chr1.1:56819117-56819136 None:intergenic 50.0%
TGAAGGTAGAGCAGAACCAG+TGG - chr1.1:56818919-56818938 None:intergenic 50.0%
TTAGGCGATGATGCTGCAGA+TGG - chr1.1:56819044-56819063 None:intergenic 50.0%
TTCAACCTGGGGAGAATGCA+AGG + chr1.1:56818670-56818689 MS.gene52955:CDS 50.0%
TTCTCGGCATCTGAAGGGTA+GGG - chr1.1:56819112-56819131 None:intergenic 50.0%
! GAACCAGTGGAAGCATGCAA+CGG - chr1.1:56818906-56818925 None:intergenic 50.0%
! TCTCCCCAGGTTGAACAAAG+GGG - chr1.1:56818665-56818684 None:intergenic 50.0%
!! CTTTTTCGCTCACAAGCCAG+AGG + chr1.1:56818872-56818891 MS.gene52955:CDS 50.0%
!! TTTTTCTGCTGCTTCTGCCG+AGG + chr1.1:56818290-56818309 MS.gene52955:CDS 50.0%
CCGCTCATGCAAACGGTAAC+CGG + chr1.1:56818352-56818371 MS.gene52955:CDS 55.0%
CCGGTTACCGTTTGCATGAG+CGG - chr1.1:56818355-56818374 None:intergenic 55.0%
CTTCTCGGCATCTGAAGGGT+AGG - chr1.1:56819113-56819132 None:intergenic 55.0%
GAGTGCCCCTTTGTTCAACC+TGG + chr1.1:56818657-56818676 MS.gene52955:CDS 55.0%
GCTGCAGATGGAGTCAAAGG+TGG - chr1.1:56819032-56819051 None:intergenic 55.0%
GTCAGGTAGGGATGGATCCA+TGG - chr1.1:56818547-56818566 None:intergenic 55.0%
GTGCCCCTTTGTTCAACCTG+GGG + chr1.1:56818659-56818678 MS.gene52955:CDS 55.0%
TCGGTTAACATCAACGCGGC+CGG - chr1.1:56818223-56818242 None:intergenic 55.0%
TGCCACATGGTTCCAGCCTT+AGG - chr1.1:56819062-56819081 None:intergenic 55.0%
! GCTTTGGCTCCGCTTCGAAA+AGG - chr1.1:56819384-56819403 None:intergenic 55.0%
CCTTCCGAAACTCGGGGCAA+GGG - chr1.1:56818731-56818750 None:intergenic 60.0%
CCTTGCCCCGAGTTTCGGAA+GGG + chr1.1:56818729-56818748 MS.gene52955:CDS 60.0%
CGACCGTTGCATGCTTCCAC+TGG + chr1.1:56818900-56818919 MS.gene52955:CDS 60.0%
CGCCTAAGGCTGGAACCATG+TGG + chr1.1:56819057-56819076 MS.gene52955:CDS 60.0%
GCAGCATCATCGCCTAAGGC+TGG + chr1.1:56819047-56819066 MS.gene52955:CDS 60.0%
GTGTCCCTTGCCCCGAGTTT+CGG + chr1.1:56818724-56818743 MS.gene52955:CDS 60.0%
TGCAACGGTCGAAGCTCCTC+TGG - chr1.1:56818891-56818910 None:intergenic 60.0%
ACCGAGCGTGCGGCTCAGAT+AGG + chr1.1:56818238-56818257 MS.gene52955:CDS 65.0%
CCCTATCTGAGCCGCACGCT+CGG - chr1.1:56818242-56818261 None:intergenic 65.0%
CCCTTCCGAAACTCGGGGCA+AGG - chr1.1:56818732-56818751 None:intergenic 65.0%
CCCTTGCCCCGAGTTTCGGA+AGG + chr1.1:56818728-56818747 MS.gene52955:CDS 65.0%
CCGAGCGTGCGGCTCAGATA+GGG + chr1.1:56818239-56818258 MS.gene52955:CDS 65.0%
!! ATGCAAGGCGCCGTGATCCG+AGG + chr1.1:56818685-56818704 MS.gene52955:CDS 65.0%
CGGCGCCTTGCATTCTCCCC+AGG - chr1.1:56818678-56818697 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 56818054 56819454 56818054 ID=MS.gene52955
chr1.1 mRNA 56818054 56819454 56818054 ID=MS.gene52955.t1;Parent=MS.gene52955
chr1.1 exon 56818054 56819454 56818054 ID=MS.gene52955.t1.exon1;Parent=MS.gene52955.t1
chr1.1 CDS 56818054 56819454 56818054 ID=cds.MS.gene52955.t1;Parent=MS.gene52955.t1
Gene Sequence

>MS.gene52955

ATGGCGTTCACAAATGCTGTTGAAAAAGATGATCATGATGTTGATGAAGTAGGGTTATGGTATGGAAGGAAGGTTGGATCAAAAGAAATGGGATATGAAGAGAGGACACCTCTTATGGTTGCTGCTTTGTTTGGAAGCAAGGGTGTGTTGTCTTATATTCTTGGAACCGGCCGCGTTGATGTTAACCGAGCGTGCGGCTCAGATAGGGCTACCGCTCTTCATTGTGCTGTTTCTGGTTTTTCTGCTGCTTCTGCCGAGGTTGTCAAACTTTTGCTTGATGCATCTGCAGATGTTAGTTCCGCTCATGCAAACGGTAACCGGTGCAGTGACTTGATTGTCTCGGTTTCTAAGAGTATCTTCGGTTCAAGGAAGAGGATACTACAAGGCAATGTTGATGACGAGGACGACGATTTCCTTAAGAAAATAGGTTTCCAAATGGTGGAGCAACAACAAGATGTAGGTACATCTCGAACTGAGAAGAAAGATTATCCCATGGATCCATCCCTACCTGACATAAAGAATGGAATATATAGTACAGATGAATTTAGGATGTTTACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCAACCTGGGGAGAATGCAAGGCGCCGTGATCCGAGGAAATATCATTACACGTGTGTCCCTTGCCCCGAGTTTCGGAAGGGATCATGCAACAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAATGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGAAACTAGATGCACGAGAAGGGTTTGCTTTTTCGCTCACAAGCCAGAGGAGCTTCGACCGTTGCATGCTTCCACTGGTTCTGCTCTACCTTCACCTACATCATATTCAAATTCACCAAGTGCTTCTTCGATGGATTCTTTCACATTGAGCTCTCCGTCTTCTTCGATACAATCTGCGTCGACACCACCTTTGACTCCATCTGCAGCATCATCGCCTAAGGCTGGAACCATGTGGCAGACTCAGATTCAGCTTAATGCTGCAGTCCCTACCCTTCAGATGCCGAGAAGCAGATTTAAAACTGCAATGAATGCTAGAAATAATGCTGAATTTCTCGAACTTGAAAATCGCCTTACAGGTCTTGCATCTCCTTCAAATAGGCTTGCAGGAGTGAATCCTACTAGCCTTGAAAACATTTTCGGGTCATCAATACAATCTCCGACATCAATGCATCAGAGCACAAACCAGCAACTTTGGGGCAATCCTTTTGATCTTACCAATTCAAATGTGATTGGATCAACACAATTTAGAGTTGATGCCTTTTCGAAGCGGAGCCAAAGCTTGATGAATGCAGATGCTAATAATGAAAAATTTGATGAATGCAGATGCTAA
Protein sequence

>MS.gene52955.t1

MAFTNAVEKDDHDVDEVGLWYGRKVGSKEMGYEERTPLMVAALFGSKGVLSYILGTGRVDVNRACGSDRATALHCAVSGFSAASAEVVKLLLDASADVSSAHANGNRCSDLIVSVSKSIFGSRKRILQGNVDDEDDDFLKKIGFQMVEQQQDVGTSRTEKKDYPMDPSLPDIKNGIYSTDEFRMFTFKVKPCSRAYSHDWTECPFVQPGENARRRDPRKYHYTCVPCPEFRKGSCNKGDACEYAHGIFECWLHPAQYRTRLCKDETRCTRRVCFFAHKPEELRPLHASTGSALPSPTSYSNSPSASSMDSFTLSSPSSSIQSASTPPLTPSAASSPKAGTMWQTQIQLNAAVPTLQMPRSRFKTAMNARNNAEFLELENRLTGLASPSNRLAGVNPTSLENIFGSSIQSPTSMHQSTNQQLWGNPFDLTNSNVIGSTQFRVDAFSKRSQSLMNADANNEKFDECRC