AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53062

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53062.t1 MTR_5g041940 92.105 266 7 2 25 290 9 260 0.0 501
MS.gene53062.t1 MTR_4g081870 70.270 259 67 5 12 269 2 251 1.31e-128 367
MS.gene53062.t1 MTR_2g093810 65.854 164 54 1 25 186 20 183 4.73e-77 238
MS.gene53062.t1 MTR_7g085220 48.496 266 111 6 25 268 14 275 4.07e-74 231
MS.gene53062.t1 MTR_2g080010 64.417 163 47 3 25 177 21 182 1.77e-73 229
MS.gene53062.t1 MTR_2157s0010 66.452 155 44 2 25 171 14 168 1.39e-71 221
MS.gene53062.t1 MTR_4g089135 60.588 170 46 2 25 173 21 190 3.39e-71 223
MS.gene53062.t1 MTR_7g100990 65.806 155 51 1 25 177 17 171 1.57e-70 221
MS.gene53062.t1 MTR_8g094580 44.737 266 121 7 15 255 1 265 2.16e-68 214
MS.gene53062.t1 MTR_3g088110 57.377 183 67 4 25 204 13 187 4.78e-68 213
MS.gene53062.t1 MTR_8g059170 61.184 152 57 1 25 176 20 169 6.97e-65 206
MS.gene53062.t1 MTR_2g079990 62.585 147 51 1 25 171 22 164 1.22e-63 204
MS.gene53062.t1 MTR_3g096920 56.213 169 70 3 15 181 1 167 1.23e-63 202
MS.gene53062.t1 MTR_2g079990 53.216 171 56 1 25 171 22 192 3.00e-59 194
MS.gene53062.t1 MTR_3g096920 45.854 205 72 3 15 181 1 204 1.60e-57 187
MS.gene53062.t1 MTR_5g040420 45.000 200 100 3 15 206 10 207 5.05e-55 183
MS.gene53062.t1 MTR_8g467490 38.434 281 145 8 3 264 2 273 2.04e-54 181
MS.gene53062.t1 MTR_2g064090 48.370 184 79 5 25 206 12 181 1.71e-52 175
MS.gene53062.t1 MTR_6g477900 48.588 177 84 3 25 198 12 184 2.95e-52 171
MS.gene53062.t1 MTR_4g108760 41.494 241 121 6 16 252 12 236 6.16e-52 174
MS.gene53062.t1 MTR_7g005280 55.280 161 59 5 16 172 10 161 1.70e-51 170
MS.gene53062.t1 MTR_6g011860 49.102 167 79 3 25 185 21 187 3.54e-51 173
MS.gene53062.t1 MTR_6g084430 51.316 152 68 1 25 176 11 156 4.54e-51 171
MS.gene53062.t1 MTR_2g062730 49.112 169 74 4 17 179 6 168 6.46e-51 171
MS.gene53062.t1 MTR_3g070030 52.632 152 71 1 25 176 25 175 1.85e-50 170
MS.gene53062.t1 MTR_2g078700 50.000 160 76 2 16 173 20 177 2.43e-50 170
MS.gene53062.t1 MTR_6g012670 47.879 165 84 1 25 189 26 188 3.23e-50 168
MS.gene53062.t1 MTR_4g035590 48.108 185 81 3 16 192 5 182 6.97e-50 169
MS.gene53062.t1 MTR_1g008740 48.851 174 71 5 25 193 19 179 8.84e-50 168
MS.gene53062.t1 MTR_1g008740 47.090 189 80 6 12 193 18 193 9.30e-50 168
MS.gene53062.t1 MTR_3g435150 53.741 147 66 1 25 171 22 166 1.51e-49 166
MS.gene53062.t1 MTR_3g109340 48.837 172 79 3 13 181 16 181 1.67e-49 167
MS.gene53062.t1 MTR_8g024480 46.023 176 85 3 15 180 9 184 3.23e-49 169
MS.gene53062.t1 MTR_8g076110 44.828 174 86 3 25 195 12 178 4.67e-49 165
MS.gene53062.t1 MTR_4g036030 50.000 154 68 2 25 175 13 160 6.45e-49 166
MS.gene53062.t1 MTR_3g109340 47.368 171 82 2 13 181 16 180 1.14e-48 166
MS.gene53062.t1 MTR_5g021710 49.007 151 68 2 25 172 14 158 2.97e-48 164
MS.gene53062.t1 MTR_6g032770 49.080 163 77 3 16 174 13 173 4.84e-48 164
MS.gene53062.t1 MTR_7g085260 47.977 173 82 3 10 176 6 176 6.08e-48 164
MS.gene53062.t1 MTR_4g101680 48.701 154 70 2 25 175 13 160 6.09e-48 164
MS.gene53062.t1 MTR_7g011130 44.767 172 84 1 18 178 18 189 9.88e-48 163
MS.gene53062.t1 MTR_8g094580 44.498 209 92 6 70 255 4 211 2.12e-47 158
MS.gene53062.t1 MTR_3g064580 51.316 152 69 3 25 174 12 160 2.36e-47 168
MS.gene53062.t1 MTR_1g096430 48.765 162 72 3 15 171 1 156 5.47e-47 160
MS.gene53062.t1 MTR_5g076850 51.316 152 68 2 25 174 12 159 1.44e-46 166
MS.gene53062.t1 MTR_5g090970 38.397 237 128 5 25 244 24 259 2.34e-46 158
MS.gene53062.t1 MTR_7g011120 47.205 161 80 2 18 173 7 167 6.99e-46 157
MS.gene53062.t1 MTR_5g090970 38.397 237 127 6 25 244 24 258 1.07e-44 154
MS.gene53062.t1 MTR_2g068880 46.927 179 77 6 15 177 15 191 1.21e-44 154
MS.gene53062.t1 MTR_5g012080 43.017 179 89 5 25 196 13 185 1.24e-44 155
MS.gene53062.t1 MTR_4g134460 46.012 163 74 3 25 186 60 209 2.22e-44 156
MS.gene53062.t1 MTR_1g069805 44.966 149 72 2 25 171 16 156 7.10e-44 150
MS.gene53062.t1 MTR_2g064470 47.619 147 72 3 25 171 17 158 3.46e-43 150
MS.gene53062.t1 MTR_2g068920 48.235 170 73 5 16 171 17 185 3.57e-43 149
MS.gene53062.t1 MTR_3g116070 50.704 142 65 3 8 144 10 151 2.78e-42 149
MS.gene53062.t1 MTR_8g099750 49.669 151 71 3 25 172 20 168 3.45e-42 145
MS.gene53062.t1 MTR_5g014300 48.718 156 64 3 25 171 12 160 6.08e-42 147
MS.gene53062.t1 MTR_5g069030 45.699 186 83 4 25 203 31 205 7.03e-42 152
MS.gene53062.t1 MTR_3g098810 42.347 196 101 5 25 214 20 209 1.62e-41 144
MS.gene53062.t1 MTR_3g096140 46.000 150 75 2 25 172 13 158 2.64e-41 144
MS.gene53062.t1 MTR_1g097300 46.980 149 73 2 25 171 25 169 2.80e-41 150
MS.gene53062.t1 MTR_4g075980 46.835 158 72 2 25 179 21 169 3.19e-41 144
MS.gene53062.t1 MTR_7g097090 44.218 147 72 2 25 169 16 154 4.57e-41 144
MS.gene53062.t1 MTR_3g096140 46.000 150 75 2 25 172 13 158 1.39e-40 144
MS.gene53062.t1 MTR_4g098630 44.444 180 85 4 25 199 12 181 2.23e-40 143
MS.gene53062.t1 MTR_3g070040 47.368 152 77 1 25 176 14 162 3.37e-40 143
MS.gene53062.t1 MTR_1g090720 48.052 154 76 2 25 174 48 201 8.95e-40 145
MS.gene53062.t1 MTR_3g093050 33.449 287 142 8 25 271 28 305 1.20e-39 146
MS.gene53062.t1 MTR_3g093050 33.449 287 142 8 25 271 28 305 1.55e-39 146
MS.gene53062.t1 MTR_1g090723 45.033 151 76 3 25 172 14 160 1.12e-38 144
MS.gene53062.t1 MTR_2g086880 42.778 180 84 5 25 202 24 186 1.30e-38 142
MS.gene53062.t1 MTR_2g086880 46.939 147 66 2 25 170 24 159 1.60e-38 143
MS.gene53062.t1 MTR_3g093040 45.283 159 79 3 25 181 114 266 1.77e-38 137
MS.gene53062.t1 MTR_1g090723 46.053 152 72 4 25 172 14 159 2.49e-38 142
MS.gene53062.t1 MTR_1g090723 46.358 151 71 4 25 171 14 158 2.49e-38 142
MS.gene53062.t1 MTR_3g098810 48.276 145 69 2 25 165 20 162 3.36e-37 130
MS.gene53062.t1 MTR_8g063550 44.000 150 78 3 25 172 12 157 1.19e-36 134
MS.gene53062.t1 MTR_0036s0150 45.033 151 73 5 25 171 11 155 1.53e-36 137
MS.gene53062.t1 MTR_8g063550 44.000 150 78 3 25 172 12 157 1.56e-36 135
MS.gene53062.t1 MTR_8g063550 44.000 150 78 3 25 172 12 157 1.94e-36 135
MS.gene53062.t1 MTR_3g096140 43.972 141 73 2 34 172 1 137 1.25e-34 128
MS.gene53062.t1 MTR_8g093580 42.000 150 81 4 25 172 12 157 1.21e-33 128
MS.gene53062.t1 MTR_2g086690 42.105 152 80 4 25 169 10 160 2.51e-32 120
MS.gene53062.t1 MTR_4g052620 38.378 185 100 6 25 201 11 189 4.41e-32 119
MS.gene53062.t1 MTR_7g105170 38.037 163 93 4 25 179 10 172 3.81e-31 117
MS.gene53062.t1 MTR_4g094302 37.086 151 83 3 25 171 17 159 1.22e-29 111
MS.gene53062.t1 MTR_8g023840 42.949 156 74 7 18 168 10 155 6.80e-29 114
MS.gene53062.t1 MTR_4g094302 40.164 122 63 2 25 144 17 130 7.84e-28 105
MS.gene53062.t1 MTR_8g023930 40.719 167 82 7 21 180 26 182 1.04e-26 108
MS.gene53062.t1 MTR_8g023900 41.176 170 77 8 21 180 195 351 1.76e-26 108
MS.gene53062.t1 MTR_8g023900 38.994 159 84 6 21 174 14 164 6.08e-26 106
MS.gene53062.t1 MTR_8g093790 38.509 161 73 6 14 172 3 139 1.34e-24 97.8
MS.gene53062.t1 MTR_8g023860 43.182 132 65 6 19 143 12 140 8.40e-24 100
MS.gene53062.t1 MTR_7g070140 56.410 78 32 1 72 147 17 94 5.86e-23 92.0
MS.gene53062.t1 MTR_3g096400 31.217 189 104 8 25 203 13 185 2.32e-21 90.1
MS.gene53062.t1 MTR_8g023880 28.326 233 128 8 25 238 13 225 1.03e-16 78.6
MS.gene53062.t1 MTR_7g083330 28.108 185 123 6 4 183 5 184 7.60e-14 68.9
MS.gene53062.t1 MTR_7g070150 46.377 69 23 2 116 177 9 70 1.55e-13 65.5
MS.gene53062.t1 MTR_1g045470 31.613 155 85 7 27 170 13 157 3.58e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53062.t1 AT1G69490 66.822 214 60 2 25 227 15 228 8.00e-105 306
MS.gene53062.t1 AT3G15510 49.362 235 91 5 25 238 23 250 1.95e-75 235
MS.gene53062.t1 AT1G61110 68.590 156 40 3 25 171 22 177 3.62e-73 228
MS.gene53062.t1 AT3G04070 49.167 240 98 5 25 241 16 254 4.57e-71 223
MS.gene53062.t1 AT3G04070 47.266 256 95 6 25 241 16 270 1.66e-70 222
MS.gene53062.t1 AT1G77450 57.647 170 70 2 12 181 3 170 3.91e-68 212
MS.gene53062.t1 AT1G01720 62.500 152 56 1 25 176 13 163 2.51e-66 209
MS.gene53062.t1 AT4G27410 48.571 210 90 3 25 220 20 225 2.57e-66 209
MS.gene53062.t1 AT1G52880 65.839 161 47 2 25 177 23 183 2.90e-66 210
MS.gene53062.t1 AT5G08790 53.261 184 82 3 15 195 1 183 4.20e-66 208
MS.gene53062.t1 AT5G63790 53.261 184 81 4 15 194 54 236 1.55e-65 208
MS.gene53062.t1 AT5G63790 53.261 184 81 4 15 194 44 226 1.61e-65 207
MS.gene53062.t1 AT3G15500 62.838 148 51 1 25 172 20 163 3.44e-65 207
MS.gene53062.t1 AT1G52890 62.416 149 52 1 25 173 20 164 6.94e-65 206
MS.gene53062.t1 AT4G27410 44.934 227 90 4 25 220 20 242 6.85e-62 198
MS.gene53062.t1 AT3G17730 49.432 176 83 2 25 198 12 183 2.29e-54 177
MS.gene53062.t1 AT2G24430 53.247 154 65 2 25 176 22 170 9.46e-53 175
MS.gene53062.t1 AT2G24430 53.247 154 65 2 25 176 22 170 9.46e-53 175
MS.gene53062.t1 AT5G39610 52.564 156 70 2 19 172 18 171 1.34e-52 174
MS.gene53062.t1 AT5G07680 53.165 158 70 2 16 171 12 167 1.68e-52 174
MS.gene53062.t1 AT5G07680 55.102 147 64 1 25 171 9 153 5.95e-52 173
MS.gene53062.t1 AT5G39820 47.674 172 71 3 25 177 26 197 1.53e-51 172
MS.gene53062.t1 AT5G61430 51.923 156 71 2 18 171 13 166 6.30e-51 171
MS.gene53062.t1 AT3G18400 48.684 152 73 1 25 176 11 157 1.19e-50 169
MS.gene53062.t1 AT3G15170 53.459 159 69 3 25 181 26 181 1.43e-50 169
MS.gene53062.t1 AT3G29035 49.708 171 80 3 6 172 7 175 1.58e-50 169
MS.gene53062.t1 AT2G33480 54.730 148 58 2 25 172 21 159 4.85e-50 166
MS.gene53062.t1 AT4G36160 46.988 166 79 2 25 187 16 175 5.49e-50 169
MS.gene53062.t1 AT4G36160 46.988 166 79 2 25 187 16 175 5.49e-50 169
MS.gene53062.t1 AT1G26870 51.250 160 67 3 25 175 22 179 5.51e-50 171
MS.gene53062.t1 AT4G36160 46.988 166 79 2 25 187 20 179 6.36e-50 169
MS.gene53062.t1 AT5G13180 56.667 150 55 4 25 172 20 161 1.07e-49 165
MS.gene53062.t1 AT1G79580 50.920 163 67 4 17 173 13 168 2.12e-49 168
MS.gene53062.t1 AT1G79580 50.920 163 67 4 17 173 13 168 2.12e-49 168
MS.gene53062.t1 AT1G79580 50.920 163 67 4 17 173 13 168 2.12e-49 168
MS.gene53062.t1 AT1G79580 50.920 163 67 4 17 173 13 168 2.12e-49 168
MS.gene53062.t1 AT1G79580 50.920 163 67 4 17 173 13 168 2.12e-49 168
MS.gene53062.t1 AT1G76420 43.137 204 106 4 25 223 28 226 2.19e-49 167
MS.gene53062.t1 AT2G33480 54.730 148 60 3 25 172 21 161 2.57e-49 164
MS.gene53062.t1 AT4G10350 47.191 178 83 3 25 199 15 184 3.29e-49 166
MS.gene53062.t1 AT1G65910 49.682 157 73 3 25 179 12 164 4.28e-49 172
MS.gene53062.t1 AT5G18270 42.273 220 117 4 10 226 10 222 5.50e-49 166
MS.gene53062.t1 AT3G04060 42.222 225 114 6 1 222 1 212 6.80e-49 166
MS.gene53062.t1 AT1G33280 50.000 164 72 2 16 176 5 161 1.10e-48 164
MS.gene53062.t1 AT5G18270 41.818 220 118 4 10 226 10 222 1.72e-48 164
MS.gene53062.t1 AT2G18060 46.541 159 76 2 25 180 15 167 2.95e-48 164
MS.gene53062.t1 AT2G18060 46.541 159 76 2 25 180 15 167 2.95e-48 164
MS.gene53062.t1 AT5G53950 48.750 160 78 2 25 182 23 180 4.73e-48 164
MS.gene53062.t1 AT2G43000 42.857 196 94 3 25 220 24 201 9.51e-48 160
MS.gene53062.t1 AT2G46770 45.000 180 85 4 15 180 10 189 1.27e-47 163
MS.gene53062.t1 AT1G71930 47.333 150 70 2 25 171 15 158 1.43e-47 162
MS.gene53062.t1 AT1G71930 47.333 150 70 2 25 171 15 158 1.43e-47 162
MS.gene53062.t1 AT5G17260 53.020 149 65 2 25 171 12 157 3.49e-47 164
MS.gene53062.t1 AT5G66300 48.684 152 70 2 25 173 18 164 3.71e-47 160
MS.gene53062.t1 AT1G32770 45.977 174 83 3 14 176 9 182 1.61e-46 160
MS.gene53062.t1 AT5G62380 49.351 154 69 2 25 175 13 160 1.99e-46 159
MS.gene53062.t1 AT5G62380 49.351 154 69 2 25 175 13 160 1.99e-46 159
MS.gene53062.t1 AT1G62700 49.669 151 67 2 25 172 13 157 4.70e-46 159
MS.gene53062.t1 AT1G62700 49.669 151 67 2 25 172 13 157 4.70e-46 159
MS.gene53062.t1 AT1G12260 47.682 151 70 2 25 172 13 157 5.68e-46 158
MS.gene53062.t1 AT3G61910 38.095 210 114 5 15 210 5 212 5.99e-46 158
MS.gene53062.t1 AT1G56010 46.622 148 77 2 25 171 25 171 1.23e-45 157
MS.gene53062.t1 AT1G12260 47.682 151 70 2 25 172 13 157 1.24e-45 159
MS.gene53062.t1 AT2G02450 47.239 163 72 3 25 186 57 206 1.59e-45 158
MS.gene53062.t1 AT2G02450 47.239 163 72 3 25 186 57 206 1.70e-45 159
MS.gene53062.t1 AT2G17040 44.865 185 89 3 25 206 12 186 2.40e-45 154
MS.gene53062.t1 AT3G03200 51.678 149 67 3 25 171 12 157 2.46e-45 159
MS.gene53062.t1 AT1G54330 49.664 149 66 2 25 171 12 153 3.65e-45 155
MS.gene53062.t1 AT3G10480 49.342 152 72 2 25 174 33 181 4.40e-45 158
MS.gene53062.t1 AT3G10480 50.000 152 70 3 25 174 33 180 1.15e-44 157
MS.gene53062.t1 AT3G10490 48.684 152 73 2 25 174 33 181 1.41e-44 151
MS.gene53062.t1 AT5G46590 52.597 154 65 4 25 174 12 161 1.58e-44 153
MS.gene53062.t1 AT4G17980 51.299 154 63 5 25 171 12 160 4.38e-43 148
MS.gene53062.t1 AT3G10490 48.684 152 73 2 25 174 33 181 4.57e-43 153
MS.gene53062.t1 AT4G17980 51.299 154 63 5 25 171 12 160 6.46e-43 149
MS.gene53062.t1 AT3G10500 48.322 149 71 2 25 171 15 159 6.47e-43 154
MS.gene53062.t1 AT5G46590 59.677 124 45 3 25 144 12 134 8.07e-43 148
MS.gene53062.t1 AT3G12977 44.218 147 79 2 25 171 24 167 6.60e-42 145
MS.gene53062.t1 AT5G04410 47.651 149 72 2 25 171 15 159 1.54e-41 150
MS.gene53062.t1 AT3G44290 48.299 147 64 2 25 170 20 155 3.63e-41 142
MS.gene53062.t1 AT5G24590 45.665 173 77 4 25 189 19 182 3.91e-41 148
MS.gene53062.t1 AT1G34190 54.098 122 54 1 25 144 22 143 6.20e-41 149
MS.gene53062.t1 AT4G35580 49.664 149 69 2 25 171 15 159 1.43e-40 147
MS.gene53062.t1 AT4G35580 49.664 149 69 2 25 171 15 159 1.52e-40 147
MS.gene53062.t1 AT4G35580 49.664 149 69 2 25 171 15 159 1.73e-40 147
MS.gene53062.t1 AT3G44290 48.299 147 64 2 25 170 20 155 2.29e-40 143
MS.gene53062.t1 AT1G32510 47.826 161 70 4 25 175 12 168 3.54e-40 141
MS.gene53062.t1 AT4G28530 42.424 165 69 3 25 171 16 172 4.00e-40 143
MS.gene53062.t1 AT3G10480 41.081 185 71 3 25 174 33 214 4.16e-40 146
MS.gene53062.t1 AT1G34180 46.405 153 68 3 25 171 22 166 4.50e-40 145
MS.gene53062.t1 AT2G27300 44.805 154 73 2 25 177 20 162 5.56e-40 142
MS.gene53062.t1 AT5G22290 47.333 150 66 3 25 172 27 165 1.05e-39 142
MS.gene53062.t1 AT1G34180 53.279 122 55 1 25 144 22 143 1.49e-39 145
MS.gene53062.t1 AT3G12910 47.500 160 70 5 25 171 27 185 2.61e-39 139
MS.gene53062.t1 AT1G33060 48.322 149 71 3 25 171 30 174 3.02e-39 145
MS.gene53062.t1 AT1G33060 48.322 149 71 3 25 171 30 174 3.39e-39 145
MS.gene53062.t1 AT3G49530 39.362 188 107 3 25 209 19 202 1.33e-38 140
MS.gene53062.t1 AT3G49530 39.362 188 107 3 25 209 19 202 1.83e-38 141
MS.gene53062.t1 AT1G34180 43.636 165 67 4 25 171 22 178 3.71e-38 140
MS.gene53062.t1 AT1G34180 49.254 134 54 2 25 144 22 155 1.24e-37 140
MS.gene53062.t1 AT5G64060 42.593 162 85 4 17 174 2 159 2.04e-37 136
MS.gene53062.t1 AT5G09330 44.099 161 78 4 17 171 2 156 2.11e-37 138
MS.gene53062.t1 AT5G09330 44.099 161 78 4 17 171 2 156 2.11e-37 138
MS.gene53062.t1 AT5G09330 44.099 161 78 4 17 171 2 156 2.11e-37 138
MS.gene53062.t1 AT5G09330 44.099 161 78 4 17 171 2 156 2.11e-37 138
MS.gene53062.t1 AT5G09330 44.099 161 78 4 17 171 2 156 2.11e-37 138
MS.gene53062.t1 AT1G32870 46.980 149 73 3 25 171 16 160 5.43e-36 135
MS.gene53062.t1 AT1G32870 46.980 149 73 3 25 171 16 160 5.48e-36 135
MS.gene53062.t1 AT1G32870 46.980 149 73 3 25 171 52 196 8.39e-36 135
MS.gene53062.t1 AT5G61430 54.808 104 45 1 68 171 2 103 9.38e-36 129
MS.gene53062.t1 AT1G56010 53.465 101 46 1 71 171 5 104 2.52e-35 128
MS.gene53062.t1 AT4G10350 50.781 128 55 3 72 199 18 137 1.56e-34 127
MS.gene53062.t1 AT2G33480 55.446 101 41 2 72 172 8 104 2.77e-31 116
MS.gene53062.t1 AT3G12977 47.222 108 54 2 64 171 10 114 8.90e-31 115
MS.gene53062.t1 AT5G22380 35.263 190 114 6 18 200 4 191 1.63e-30 115
MS.gene53062.t1 AT3G44350 36.905 168 97 5 18 179 4 168 1.13e-28 110
MS.gene53062.t1 AT5G04395 43.382 136 61 3 25 144 34 169 3.47e-28 107
MS.gene53062.t1 AT3G44350 41.912 136 69 4 18 145 4 137 4.38e-27 103
MS.gene53062.t1 AT5G64530 34.591 159 80 4 25 171 9 155 8.56e-26 101
MS.gene53062.t1 AT5G64530 39.344 122 60 3 25 144 9 118 2.80e-25 99.0
MS.gene53062.t1 AT3G04420 42.063 126 69 2 21 142 5 130 1.77e-24 100
MS.gene53062.t1 AT3G04420 42.063 126 69 2 21 142 5 130 3.20e-24 100
MS.gene53062.t1 AT2G43000 39.286 140 67 3 81 220 2 123 3.23e-24 97.4
MS.gene53062.t1 AT4G28530 32.515 163 51 3 25 171 16 135 1.48e-23 98.2
MS.gene53062.t1 AT4G01550 43.651 126 65 4 25 144 10 135 1.76e-23 99.8
MS.gene53062.t1 AT3G10490 49.398 83 39 1 92 174 2 81 4.92e-21 92.0
MS.gene53062.t1 AT3G10490 49.398 83 39 1 92 174 2 81 4.92e-21 92.0
MS.gene53062.t1 AT1G02230 41.085 129 66 5 21 142 5 130 5.83e-20 89.0
MS.gene53062.t1 AT1G02220 39.535 129 71 3 18 142 2 127 7.02e-20 89.0
MS.gene53062.t1 AT4G01520 29.048 210 132 6 25 226 10 210 9.23e-20 87.4
MS.gene53062.t1 AT2G18060 49.351 77 33 1 96 172 1 71 1.02e-19 87.0
MS.gene53062.t1 AT4G01540 38.583 127 71 4 25 144 10 136 2.18e-19 88.2
MS.gene53062.t1 AT4G01540 38.583 127 71 4 25 144 10 136 2.24e-19 87.8
MS.gene53062.t1 AT4G01540 38.583 127 71 4 25 144 10 136 2.79e-19 87.4
MS.gene53062.t1 AT5G14000 34.532 139 85 3 10 146 8 142 3.15e-19 82.8
MS.gene53062.t1 AT4G01540 38.583 127 71 4 25 144 10 136 3.23e-19 87.0
MS.gene53062.t1 AT5G14000 31.325 166 99 5 10 172 8 161 3.75e-19 84.0
MS.gene53062.t1 AT1G01010 39.716 141 65 6 18 143 2 137 6.96e-19 86.7
MS.gene53062.t1 AT1G02250 40.800 125 64 4 25 142 9 130 2.71e-18 84.3
MS.gene53062.t1 AT3G56530 26.866 201 128 4 25 212 58 252 8.05e-16 76.6
MS.gene53062.t1 AT5G22290 48.684 76 27 2 98 172 2 66 2.10e-15 74.3
MS.gene53062.t1 AT5G50820 32.812 128 74 5 25 148 23 142 9.04e-15 71.6
MS.gene53062.t1 AT3G55210 25.379 264 163 7 25 272 17 262 2.01e-13 69.3
MS.gene53062.t1 AT3G04430 34.848 132 72 5 25 143 6 136 9.57e-12 63.2

Find 75 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAATAGAGCAACTGTTTC+TGG 0.114611 5.4:-30743532 MS.gene53062:CDS
GAGCAACTGTTTCTGGTTAT+TGG 0.119301 5.4:-30743525 MS.gene53062:CDS
ATGCATGAATATAGGTTAAT+TGG 0.177043 5.4:-30743388 MS.gene53062:CDS
AGACAAGCTAATAGACAAAT+TGG 0.221223 5.4:-30743358 MS.gene53062:CDS
GCTGCATAAGTGTTGTTATT+AGG 0.262745 5.4:+30742677 None:intergenic
TCTGATAATATTTGTGATAT+TGG 0.265842 5.4:+30742791 None:intergenic
TTTGGATACTTTCTTTCTCT+TGG 0.274152 5.4:+30743565 None:intergenic
GTTTGGGAGGGCGGCCTTGA+TGG 0.282844 5.4:-30744744 MS.gene53062:CDS
CAATCTGTCTTGATTCCCTT+TGG 0.309227 5.4:+30743415 None:intergenic
GTGAAACAAAATAGCAGCTT+TGG 0.314170 5.4:-30742635 MS.gene53062:CDS
GTCATATTGATTTGGTTTGT+TGG 0.325534 5.4:+30742905 None:intergenic
AGGACGCAGTTGTGAGGTTT+GGG 0.343010 5.4:-30744760 MS.gene53062:CDS
AATTTATAGATATCAACTTC+TGG 0.350245 5.4:+30743900 None:intergenic
CCAGAAACAGTTGCTCTATT+AGG 0.351468 5.4:+30743532 None:intergenic
CTATTAGGTCTGACCCCATT+TGG 0.354441 5.4:+30743547 None:intergenic
AAGGACGCAGTTGTGAGGTT+TGG 0.365051 5.4:-30744761 MS.gene53062:CDS
TTTAGTGGGTCTAAGCATAT+TGG 0.378176 5.4:-30743475 MS.gene53062:CDS
ATTGGATTATGCATGAATAT+AGG 0.381580 5.4:-30743396 MS.gene53062:CDS
TTGTTTGTGTCATATTGATT+TGG 0.406344 5.4:+30742897 None:intergenic
TCATGATAGTGAACAAGAAT+TGG 0.413330 5.4:-30742870 MS.gene53062:CDS
GAAGAACATCACAAAATCAT+TGG 0.420592 5.4:-30742945 MS.gene53062:CDS
ATTCCCTTCGATCAAATACT+TGG 0.421170 5.4:+30742609 None:intergenic
TCATATTGATTTGGTTTGTT+GGG 0.422054 5.4:+30742906 None:intergenic
GATGGTGAAGTTGATGTTGC+TGG 0.425865 5.4:-30744726 MS.gene53062:CDS
AGAGAAAGAAAGTATCCAAA+TGG 0.427350 5.4:-30743562 MS.gene53062:CDS
TCTGTCTTGATTCCCTTTGG+TGG 0.433579 5.4:+30743418 None:intergenic
GAGAAAGAAAGTATCCAAAT+GGG 0.443759 5.4:-30743561 MS.gene53062:CDS
TGAAACAAAATAGCAGCTTT+GGG 0.456984 5.4:-30742634 MS.gene53062:CDS
GTGTCATCAGCTAGATGATT+GGG 0.461412 5.4:-30742990 MS.gene53062:intron
CCATATTCAAAAGATTAGTA+AGG 0.462105 5.4:+30742825 None:intergenic
TATTGGAGTTAAGAAAGCTT+TGG 0.462561 5.4:-30743458 MS.gene53062:CDS
CAAAGGGAATCAAGACAGAT+TGG 0.478450 5.4:-30743414 MS.gene53062:CDS
AATGCAGATAAATCAGACTT+TGG 0.488022 5.4:-30743613 MS.gene53062:intron
TGTATTAATTTGAAATTCAA+AGG 0.488952 5.4:+30742751 None:intergenic
TCTGGTTATTGGAAAGCCAC+TGG 0.489239 5.4:-30743514 MS.gene53062:CDS
ATATCTATAAATTTGATCCA+TGG 0.491707 5.4:-30743890 MS.gene53062:CDS
GACAAGCTAATAGACAAATT+GGG 0.499703 5.4:-30743357 MS.gene53062:CDS
TTAGTAAGGGAACATGTCCT+TGG 0.503531 5.4:+30742839 None:intergenic
AGTTGTGAGGTTTGGGAGGG+CGG 0.507947 5.4:-30744753 MS.gene53062:CDS
GATTAAAAGGCTTACCCTCA+TGG 0.508340 5.4:+30743333 None:intergenic
ATAATTAGTTCCTCATCAGT+TGG 0.510932 5.4:+30743975 None:intergenic
CAGACTTTGGAGAAAATGAA+TGG 0.513025 5.4:-30743600 MS.gene53062:CDS
TATCTATAAATTTGATCCAT+GGG 0.513541 5.4:-30743889 MS.gene53062:CDS
ACAGACAAATCAATCTTTAG+TGG 0.516941 5.4:-30743490 MS.gene53062:CDS
TGTGTCATCAGCTAGATGAT+TGG 0.521561 5.4:-30742991 MS.gene53062:intron
GATTGATTTGTCTGTTCCAG+TGG 0.533978 5.4:+30743498 None:intergenic
CGCAGTTGTGAGGTTTGGGA+GGG 0.534101 5.4:-30744756 MS.gene53062:CDS
TAGATGATTGGGTCTTATGT+AGG 0.538283 5.4:-30742979 MS.gene53062:CDS
CCCCTTTGTAAAACCACAGA+TGG 0.539188 5.4:-30742708 MS.gene53062:CDS
ACTTCTGGAATGATAGATGC+AGG 0.543202 5.4:+30743915 None:intergenic
GGAACCAAGTATTTGATCGA+AGG 0.544340 5.4:-30742613 MS.gene53062:CDS
TACAAGGGTAGGCCACCAAA+GGG 0.558622 5.4:-30743430 MS.gene53062:CDS
ACGCAGTTGTGAGGTTTGGG+AGG 0.559975 5.4:-30744757 MS.gene53062:CDS
AAGAATTGGTGAAATTTCCA+AGG 0.561534 5.4:-30742856 MS.gene53062:CDS
GTGAAGTTGATGTTGCTGGT+GGG 0.570095 5.4:-30744722 MS.gene53062:intron
TAGGTTTCATCCAACTGATG+AGG 0.573797 5.4:-30743985 MS.gene53062:CDS
CAACATCAACTTCACCATCA+AGG 0.575124 5.4:+30744730 None:intergenic
GGTGAAGTTGATGTTGCTGG+TGG 0.575486 5.4:-30744723 MS.gene53062:CDS
TTACAAGGGTAGGCCACCAA+AGG 0.577490 5.4:-30743431 MS.gene53062:CDS
CAGACAAATCAATCTTTAGT+GGG 0.582149 5.4:-30743489 MS.gene53062:CDS
CATATTCAAAAGATTAGTAA+GGG 0.590186 5.4:+30742826 None:intergenic
TTAGGCATTTCAACCATCTG+TGG 0.590855 5.4:+30742695 None:intergenic
GAACCAAGTATTTGATCGAA+GGG 0.595225 5.4:-30742612 MS.gene53062:CDS
ATATCACAAATATTATCAGA+TGG 0.602546 5.4:-30742788 MS.gene53062:CDS
TTTGATCCATGGGAATTACC+TGG 0.604246 5.4:-30743879 MS.gene53062:intron
TATGTACCAGGTAATTCCCA+TGG 0.608381 5.4:+30743873 None:intergenic
TTTCAAATTAATACAGCACA+TGG 0.620955 5.4:-30742743 MS.gene53062:CDS
ATGTTAAGGATGCAACAAGA+AGG 0.625185 5.4:-30744780 None:intergenic
ACAAGAAGGACGCAGTTGTG+AGG 0.636335 5.4:-30744766 MS.gene53062:CDS
CAAATTAATACAGCACATGG+TGG 0.638373 5.4:-30742740 MS.gene53062:CDS
TAGACAAATTGGGTCCATGA+GGG 0.644861 5.4:-30743347 MS.gene53062:intron
ATAGACAAATTGGGTCCATG+AGG 0.654028 5.4:-30743348 MS.gene53062:CDS
AGAAAGAAAGTATCCAAATG+GGG 0.672302 5.4:-30743560 MS.gene53062:CDS
GTGATGTTGCTTGATTACAA+AGG 0.686883 5.4:+30743946 None:intergenic
GGAATGATAGATGCAGGACA+TGG 0.693970 5.4:+30743921 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAAAAAAAAAAAAAAGA+AGG - chr5.4:30743005-30743024 MS.gene53062:intron 10.0%
!! GATAAAATTACATATATAAT+TGG + chr5.4:30743603-30743622 None:intergenic 10.0%
!!! AGCTATTTTAAATTTTTTTT+TGG - chr5.4:30744338-30744357 MS.gene53062:intron 10.0%
!!! TAAACAATTAGATATATTTT+AGG + chr5.4:30743635-30743654 None:intergenic 10.0%
!! AATATATCTAATTGTTTATG+CGG - chr5.4:30743637-30743656 MS.gene53062:intron 15.0%
!!! TAGAATTTTGTTAATTTGAA+GGG - chr5.4:30744273-30744292 MS.gene53062:intron 15.0%
!!! TGTATTAATTTGAAATTCAA+AGG + chr5.4:30744630-30744649 None:intergenic 15.0%
!! AAAAAACCTCAAAGATAAAA+GGG - chr5.4:30743172-30743191 MS.gene53062:intron 20.0%
!! AAAAGCTATATAGGATTAAA+AGG + chr5.4:30744061-30744080 None:intergenic 20.0%
!! AAAATTTCAAATTTCTACAC+CGG + chr5.4:30743568-30743587 None:intergenic 20.0%
!! AATATCAGTTTATTATGTAG+AGG - chr5.4:30743704-30743723 MS.gene53062:intron 20.0%
!! AATTTATAGATATCAACTTC+TGG + chr5.4:30743481-30743500 None:intergenic 20.0%
!! AGTGTAAAAATAATATAGTG+TGG - chr5.4:30742717-30742736 MS.gene53062:CDS 20.0%
!! ATATCACAAATATTATCAGA+TGG - chr5.4:30744590-30744609 MS.gene53062:intron 20.0%
!! ATATCTATAAATTTGATCCA+TGG - chr5.4:30743488-30743507 MS.gene53062:CDS 20.0%
!! CATATCAATTAAATTCGATA+AGG + chr5.4:30743539-30743558 None:intergenic 20.0%
!! CATATTCAAAAGATTAGTAA+GGG + chr5.4:30744555-30744574 None:intergenic 20.0%
!! GAAATTGATATTGTAAAGAA+GGG + chr5.4:30743245-30743264 None:intergenic 20.0%
!! TAATTTGAGAAAAAGTTGTT+AGG + chr5.4:30743267-30743286 None:intergenic 20.0%
!! TATCTATAAATTTGATCCAT+GGG - chr5.4:30743489-30743508 MS.gene53062:CDS 20.0%
!! TCTGATAATATTTGTGATAT+TGG + chr5.4:30744590-30744609 None:intergenic 20.0%
!! TTCTTACATCATTACAAAAA+TGG + chr5.4:30742840-30742859 None:intergenic 20.0%
!!! AGAAATTCTAAAAGCTATAT+AGG + chr5.4:30744070-30744089 None:intergenic 20.0%
!!! ATTTTAGATACTAAATTGGT+CGG + chr5.4:30744202-30744221 None:intergenic 20.0%
!!! CTATAGACTAATAATTTTCT+TGG + chr5.4:30743325-30743344 None:intergenic 20.0%
!!! CTTTTGAATATGGATTATAT+GGG - chr5.4:30744563-30744582 MS.gene53062:intron 20.0%
!!! GACAATTTTAGATACTAAAT+TGG + chr5.4:30744206-30744225 None:intergenic 20.0%
!!! GTAGAATTTTGTTAATTTGA+AGG - chr5.4:30744272-30744291 MS.gene53062:intron 20.0%
!!! TCTTTTGAATATGGATTATA+TGG - chr5.4:30744562-30744581 MS.gene53062:intron 20.0%
!!! TTTCTCAATATTTTACTCAA+TGG - chr5.4:30743354-30743373 MS.gene53062:CDS 20.0%
!!! TTTTTTGAATAATACTAGCT+AGG + chr5.4:30742995-30743014 None:intergenic 20.0%
! AAAAACCTCAAAGATAAAAG+GGG - chr5.4:30743173-30743192 MS.gene53062:intron 25.0%
! AATTGTCTTGTAAACCTTAT+CGG - chr5.4:30744219-30744238 MS.gene53062:intron 25.0%
! AATTTGTAACGCATATTCTA+AGG - chr5.4:30743091-30743110 MS.gene53062:intron 25.0%
! AGTCATTTAAAAGATATGTG+AGG - chr5.4:30743032-30743051 MS.gene53062:intron 25.0%
! ATAGTCTTCATTTGATCTAA+TGG - chr5.4:30742758-30742777 MS.gene53062:CDS 25.0%
! ATGCATGAATATAGGTTAAT+TGG - chr5.4:30743990-30744009 MS.gene53062:intron 25.0%
! ATTGGATTATGCATGAATAT+AGG - chr5.4:30743982-30744001 MS.gene53062:CDS 25.0%
! CAAAAAACCTCAAAGATAAA+AGG - chr5.4:30743171-30743190 MS.gene53062:intron 25.0%
! CCATATTCAAAAGATTAGTA+AGG + chr5.4:30744556-30744575 None:intergenic 25.0%
! GGAAATTGATATTGTAAAGA+AGG + chr5.4:30743246-30743265 None:intergenic 25.0%
! GTCATTTAAAAGATATGTGA+GGG - chr5.4:30743033-30743052 MS.gene53062:intron 25.0%
! TTACATCATTACAAAAATGG+TGG + chr5.4:30742837-30742856 None:intergenic 25.0%
! TTTAGGAGAAAAATGTTACT+AGG + chr5.4:30743294-30743313 None:intergenic 25.0%
! TTTCAAATTAATACAGCACA+TGG - chr5.4:30744635-30744654 MS.gene53062:intron 25.0%
!! CCTTACTAATCTTTTGAATA+TGG - chr5.4:30744553-30744572 MS.gene53062:intron 25.0%
!! TTGTTTGTGTCATATTGATT+TGG + chr5.4:30744484-30744503 None:intergenic 25.0%
!!! AAAGCTTTGGTATTTTACAA+GGG - chr5.4:30743933-30743952 MS.gene53062:CDS 25.0%
!!! TCATATTGATTTGGTTTGTT+GGG + chr5.4:30744475-30744494 None:intergenic 25.0%
!!! TTTTCTTGGCTATTTTCTTT+AGG + chr5.4:30743311-30743330 None:intergenic 25.0%
AAGAATTGGTGAAATTTCCA+AGG - chr5.4:30744522-30744541 MS.gene53062:intron 30.0%
AATGCAGATAAATCAGACTT+TGG - chr5.4:30743765-30743784 MS.gene53062:intron 30.0%
ACAGACAAATCAATCTTTAG+TGG - chr5.4:30743888-30743907 MS.gene53062:CDS 30.0%
AGACAAGCTAATAGACAAAT+TGG - chr5.4:30744020-30744039 MS.gene53062:intron 30.0%
ATAATTAGTTCCTCATCAGT+TGG + chr5.4:30743406-30743425 None:intergenic 30.0%
CAGACAAATCAATCTTTAGT+GGG - chr5.4:30743889-30743908 MS.gene53062:CDS 30.0%
CAGTTTATTATGTAGAGGTT+TGG - chr5.4:30743709-30743728 MS.gene53062:intron 30.0%
CATTGAATACAACCTTAATG+TGG - chr5.4:30742959-30742978 MS.gene53062:CDS 30.0%
CCTACAATTTCAAGACTAAT+CGG + chr5.4:30744114-30744133 None:intergenic 30.0%
GAAGAACATCACAAAATCAT+TGG - chr5.4:30744433-30744452 MS.gene53062:intron 30.0%
GACAAGCTAATAGACAAATT+GGG - chr5.4:30744021-30744040 MS.gene53062:intron 30.0%
TAAAATTTGTCGATCCGATA+AGG + chr5.4:30744236-30744255 None:intergenic 30.0%
TAAGGTTGTATTCAATGCTT+TGG + chr5.4:30742956-30742975 None:intergenic 30.0%
TATTGGAGTTAAGAAAGCTT+TGG - chr5.4:30743920-30743939 MS.gene53062:CDS 30.0%
TGAAACAAAATAGCAGCTTT+GGG - chr5.4:30744744-30744763 MS.gene53062:CDS 30.0%
TTTAATTGATATGCATCTGC+CGG - chr5.4:30743546-30743565 MS.gene53062:CDS 30.0%
TTTGGATACTTTCTTTCTCT+TGG + chr5.4:30743816-30743835 None:intergenic 30.0%
! TCATGATAGTGAACAAGAAT+TGG - chr5.4:30744508-30744527 MS.gene53062:intron 30.0%
!! AGAAAGAAAGTATCCAAATG+GGG - chr5.4:30743818-30743837 MS.gene53062:intron 30.0%
!! AGAGAAAGAAAGTATCCAAA+TGG - chr5.4:30743816-30743835 MS.gene53062:intron 30.0%
!! ATGCTTTGGAGGAATATTAT+TGG + chr5.4:30742942-30742961 None:intergenic 30.0%
!! GAAAGCTTTGGTATTTTACA+AGG - chr5.4:30743932-30743951 MS.gene53062:CDS 30.0%
!! GAGAAAGAAAGTATCCAAAT+GGG - chr5.4:30743817-30743836 MS.gene53062:intron 30.0%
!! GTCATATTGATTTGGTTTGT+TGG + chr5.4:30744476-30744495 None:intergenic 30.0%
AAAAATGGTGGCATTTACCA+TGG + chr5.4:30742825-30742844 None:intergenic 35.0%
AAAATGGTGGCATTTACCAT+GGG + chr5.4:30742824-30742843 None:intergenic 35.0%
ATAGCTATAGCGAATCAAAG+AGG + chr5.4:30744324-30744343 None:intergenic 35.0%
ATTCCCTTCGATCAAATACT+TGG + chr5.4:30744772-30744791 None:intergenic 35.0%
CAAAAAAACTTTCCCATGGT+GGG - chr5.4:30742783-30742802 MS.gene53062:CDS 35.0%
CAAATTAATACAGCACATGG+TGG - chr5.4:30744638-30744657 MS.gene53062:intron 35.0%
GAACCAAGTATTTGATCGAA+GGG - chr5.4:30744766-30744785 MS.gene53062:CDS 35.0%
GAAGGGTTCAAAAGAAATCA+AGG + chr5.4:30743228-30743247 None:intergenic 35.0%
GGTTCAAAAAAACTTTCCCA+TGG - chr5.4:30742779-30742798 MS.gene53062:CDS 35.0%
GTGAAACAAAATAGCAGCTT+TGG - chr5.4:30744743-30744762 MS.gene53062:CDS 35.0%
TAGTGTTGCATGGATTTGAT+TGG + chr5.4:30743142-30743161 None:intergenic 35.0%
TCAAAAAAACTTTCCCATGG+TGG - chr5.4:30742782-30742801 MS.gene53062:CDS 35.0%
TTTATGCGGTCAGTTGTAAT+TGG - chr5.4:30743651-30743670 MS.gene53062:intron 35.0%
! CAGACTTTGGAGAAAATGAA+TGG - chr5.4:30743778-30743797 MS.gene53062:intron 35.0%
! CTTTGGTATTTTACAAGGGT+AGG - chr5.4:30743937-30743956 MS.gene53062:CDS 35.0%
! GCTGCATAAGTGTTGTTATT+AGG + chr5.4:30744704-30744723 None:intergenic 35.0%
! GTGATGTTGCTTGATTACAA+AGG + chr5.4:30743435-30743454 None:intergenic 35.0%
! TAGATGATTGGGTCTTATGT+AGG - chr5.4:30744399-30744418 MS.gene53062:intron 35.0%
! TTTAGTGGGTCTAAGCATAT+TGG - chr5.4:30743903-30743922 MS.gene53062:CDS 35.0%
!! AACCATCTGTGGTTTTACAA+AGG + chr5.4:30744675-30744694 None:intergenic 35.0%
!! ACCATCTGTGGTTTTACAAA+GGG + chr5.4:30744674-30744693 None:intergenic 35.0%
!! CCGATTAGTCTTGAAATTGT+AGG - chr5.4:30744111-30744130 MS.gene53062:intron 35.0%
AAGGCGATAACATATGTACC+AGG + chr5.4:30743520-30743539 None:intergenic 40.0%
ATAGACAAATTGGGTCCATG+AGG - chr5.4:30744030-30744049 MS.gene53062:intron 40.0%
CAAAGGGAATCAAGACAGAT+TGG - chr5.4:30743964-30743983 MS.gene53062:CDS 40.0%
CAACATCAACTTCACCATCA+AGG + chr5.4:30742651-30742670 None:intergenic 40.0%
CAATCTGTCTTGATTCCCTT+TGG + chr5.4:30743966-30743985 None:intergenic 40.0%
CCAGAAACAGTTGCTCTATT+AGG + chr5.4:30743849-30743868 None:intergenic 40.0%
CCTAATAGAGCAACTGTTTC+TGG - chr5.4:30743846-30743865 MS.gene53062:intron 40.0%
CTGATGACACATGAACACAA+AGG + chr5.4:30744378-30744397 None:intergenic 40.0%
GATTAAAAGGCTTACCCTCA+TGG + chr5.4:30744048-30744067 None:intergenic 40.0%
GGAACCAAGTATTTGATCGA+AGG - chr5.4:30744765-30744784 MS.gene53062:CDS 40.0%
GGTTGTATTCAATGCTTTGG+AGG + chr5.4:30742953-30742972 None:intergenic 40.0%
GTGTCATCAGCTAGATGATT+GGG - chr5.4:30744388-30744407 MS.gene53062:intron 40.0%
TAGACAAATTGGGTCCATGA+GGG - chr5.4:30744031-30744050 MS.gene53062:intron 40.0%
TAGGTTTCATCCAACTGATG+AGG - chr5.4:30743393-30743412 MS.gene53062:CDS 40.0%
TATGTACCAGGTAATTCCCA+TGG + chr5.4:30743508-30743527 None:intergenic 40.0%
TGTGTCATCAGCTAGATGAT+TGG - chr5.4:30744387-30744406 MS.gene53062:intron 40.0%
TTAGGCATTTCAACCATCTG+TGG + chr5.4:30744686-30744705 None:intergenic 40.0%
TTAGTAAGGGAACATGTCCT+TGG + chr5.4:30744542-30744561 None:intergenic 40.0%
TTTGATCCATGGGAATTACC+TGG - chr5.4:30743499-30743518 MS.gene53062:CDS 40.0%
! GGTCGACTTTATCCACATTA+AGG + chr5.4:30742974-30742993 None:intergenic 40.0%
! TGATGCCCCTTTTATCTTTG+AGG + chr5.4:30743181-30743200 None:intergenic 40.0%
!! ACTTCTGGAATGATAGATGC+AGG + chr5.4:30743466-30743485 None:intergenic 40.0%
!! CCATCTGTGGTTTTACAAAG+GGG + chr5.4:30744673-30744692 None:intergenic 40.0%
!! GAGCAACTGTTTCTGGTTAT+TGG - chr5.4:30743853-30743872 MS.gene53062:intron 40.0%
!! GATTGATTTGTCTGTTCCAG+TGG + chr5.4:30743883-30743902 None:intergenic 40.0%
CCCCTTTGTAAAACCACAGA+TGG - chr5.4:30744670-30744689 MS.gene53062:intron 45.0%
CTATTAGGTCTGACCCCATT+TGG + chr5.4:30743834-30743853 None:intergenic 45.0%
GAAAGGATTCACCTTTCCCA+TGG - chr5.4:30742805-30742824 MS.gene53062:CDS 45.0%
GACACATGAACACAAAGGCA+AGG + chr5.4:30744373-30744392 None:intergenic 45.0%
GATGAAACCTAAAGCCAGGT+GGG + chr5.4:30743384-30743403 None:intergenic 45.0%
GGAATGATAGATGCAGGACA+TGG + chr5.4:30743460-30743479 None:intergenic 45.0%
GTCGTTTGTGTAGTGTTGCA+TGG + chr5.4:30743152-30743171 None:intergenic 45.0%
GTTGGATGAAACCTAAAGCC+AGG + chr5.4:30743388-30743407 None:intergenic 45.0%
TCTGGTTATTGGAAAGCCAC+TGG - chr5.4:30743864-30743883 MS.gene53062:intron 45.0%
TCTGTCTTGATTCCCTTTGG+TGG + chr5.4:30743963-30743982 None:intergenic 45.0%
! AAACTTTCCCATGGTGGGAA+AGG - chr5.4:30742788-30742807 MS.gene53062:CDS 45.0%
! AGGGAGTTCTAGTCACTGAT+TGG - chr5.4:30743052-30743071 MS.gene53062:intron 45.0%
! TCTAGTCACTGATTGGAGCA+TGG - chr5.4:30743059-30743078 MS.gene53062:intron 45.0%
!! GATGGTGAAGTTGATGTTGC+TGG - chr5.4:30742652-30742671 MS.gene53062:CDS 45.0%
!! GGTGTCGAGCAGTTTGATTT+TGG - chr5.4:30744132-30744151 MS.gene53062:intron 45.0%
!! GTGAAGTTGATGTTGCTGGT+GGG - chr5.4:30742656-30742675 MS.gene53062:CDS 45.0%
AAGGACGCAGTTGTGAGGTT+TGG - chr5.4:30742617-30742636 MS.gene53062:CDS 50.0%
ACAAGAAGGACGCAGTTGTG+AGG - chr5.4:30742612-30742631 MS.gene53062:CDS 50.0%
AGGACGCAGTTGTGAGGTTT+GGG - chr5.4:30742618-30742637 MS.gene53062:CDS 50.0%
AGGTGAATCCTTTCCCACCA+TGG + chr5.4:30742799-30742818 None:intergenic 50.0%
GGATGAAACCTAAAGCCAGG+TGG + chr5.4:30743385-30743404 None:intergenic 50.0%
GGTGAATCCTTTCCCACCAT+GGG + chr5.4:30742798-30742817 None:intergenic 50.0%
GGTGGCATTTACCATGGGAA+AGG + chr5.4:30742819-30742838 None:intergenic 50.0%
TACAAGGGTAGGCCACCAAA+GGG - chr5.4:30743948-30743967 MS.gene53062:CDS 50.0%
TACTCAATGGAACTCCCACC+TGG - chr5.4:30743367-30743386 MS.gene53062:CDS 50.0%
TTACAAGGGTAGGCCACCAA+AGG - chr5.4:30743947-30743966 MS.gene53062:CDS 50.0%
! AGTTGATGTTGCTGGTGGGT+GGG - chr5.4:30742660-30742679 MS.gene53062:CDS 50.0%
!! AAGTTGATGTTGCTGGTGGG+TGG - chr5.4:30742659-30742678 MS.gene53062:CDS 50.0%
!! GGTGAAGTTGATGTTGCTGG+TGG - chr5.4:30742655-30742674 MS.gene53062:CDS 50.0%
ACATGGAGGAGAGACAAGGG+TGG - chr5.4:30742688-30742707 MS.gene53062:CDS 55.0%
ACGCAGTTGTGAGGTTTGGG+AGG - chr5.4:30742621-30742640 MS.gene53062:CDS 55.0%
AGTTGTGAGGTTTGGGAGGG+CGG - chr5.4:30742625-30742644 MS.gene53062:CDS 55.0%
CGCAGTTGTGAGGTTTGGGA+GGG - chr5.4:30742622-30742641 MS.gene53062:CDS 55.0%
GGGACATGGAGGAGAGACAA+GGG - chr5.4:30742685-30742704 MS.gene53062:CDS 55.0%
! TGGAACTCCCACCTGGCTTT+AGG - chr5.4:30743374-30743393 MS.gene53062:CDS 55.0%
GGGGACATGGAGGAGAGACA+AGG - chr5.4:30742684-30742703 MS.gene53062:CDS 60.0%
! ATGTTGCTGGTGGGTGGGTG+GGG - chr5.4:30742665-30742684 MS.gene53062:CDS 60.0%
! GATGTTGCTGGTGGGTGGGT+GGG - chr5.4:30742664-30742683 MS.gene53062:CDS 60.0%
! TGATGTTGCTGGTGGGTGGG+TGG - chr5.4:30742663-30742682 MS.gene53062:CDS 60.0%
GTTTGGGAGGGCGGCCTTGA+TGG - chr5.4:30742634-30742653 MS.gene53062:CDS 65.0%
GTGGGTGGGTGGGGACATGG+AGG - chr5.4:30742674-30742693 MS.gene53062:CDS 70.0%
! CTGGTGGGTGGGTGGGGACA+TGG - chr5.4:30742671-30742690 MS.gene53062:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 30742607 30744793 30742607 ID=MS.gene53062
chr5.4 mRNA 30742607 30744793 30742607 ID=MS.gene53062.t1;Parent=MS.gene53062
chr5.4 exon 30744723 30744793 30744723 ID=MS.gene53062.t1.exon1;Parent=MS.gene53062.t1
chr5.4 CDS 30744723 30744793 30744723 ID=cds.MS.gene53062.t1;Parent=MS.gene53062.t1
chr5.4 exon 30743880 30744004 30743880 ID=MS.gene53062.t1.exon2;Parent=MS.gene53062.t1
chr5.4 CDS 30743880 30744004 30743880 ID=cds.MS.gene53062.t1;Parent=MS.gene53062.t1
chr5.4 exon 30743348 30743628 30743348 ID=MS.gene53062.t1.exon3;Parent=MS.gene53062.t1
chr5.4 CDS 30743348 30743628 30743348 ID=cds.MS.gene53062.t1;Parent=MS.gene53062.t1
chr5.4 exon 30742607 30743002 30742607 ID=MS.gene53062.t1.exon4;Parent=MS.gene53062.t1
chr5.4 CDS 30742607 30743002 30742607 ID=cds.MS.gene53062.t1;Parent=MS.gene53062.t1
Gene Sequence

>MS.gene53062

ATGCAACAAGAAGGACGCAGTTGTGAGGTTTGGGAGGGCGGCCTTGATGGTGAAGTTGATGTTGCTGGTGGGTGGGTGGGGACATGGAGGAGAGACAAGGGTGGTGTAATAGTGTAAAAATAATATAGTGTGGAGAGAATATGATAAGAATATAGTCTTCATTTGATCTAATGGTTCAAAAAAACTTTCCCATGGTGGGAAAGGATTCACCTTTCCCATGGTAAATGCCACCATTTTTGTAATGATGTAAGAATTCAAAAAACTAGCTTTGCTGACATCAACTCAACAATTATACAAAAAAATTATACAAAACTTTATATATATGCAATATGCCAATAATATTCCTCCAAAGCATTGAATACAACCTTAATGTGGATAAAGTCGACCTAGCTAGTATTATTCAAAAAAAAAAAAAAGAAGGAAAAAGTCATTTAAAAGATATGTGAGGGAGTTCTAGTCACTGATTGGAGCATGGCATGAGCTTAATTTGTAACGCATATTCTAAGGTAACATAAAAAAGTCTTTCTATGAACCAATCAAATCCATGCAACACTACACAAACGACAAAAAACCTCAAAGATAAAAGGGGCATCAATCTCTTTGCAAACATTTCAAACACCTTGATTTCTTTTGAACCCTTCTTTACAATATCAATTTCCTAACAACTTTTTCTCAAATTAATTTCCTAGTAACATTTTTCTCCTAAAGAAAATAGCCAAGAAAATTATTAGTCTATAGTTTCTTATTTTTCTCAATATTTTACTCAATGGAACTCCCACCTGGCTTTAGGTTTCATCCAACTGATGAGGAACTAATTATGTATTACCTTTGTAATCAAGCAACATCACAACCATGTCCTGCATCTATCATTCCAGAAGTTGATATCTATAAATTTGATCCATGGGAATTACCTGGTACATATGTTATCGCCTTATCGAATTTAATTGATATGCATCTGCCGGTGTAGAAATTTGAAATTTTCTACGCATGCATCCAATTATATATGTAATTTTATCATATTAGTTCCTAAAATATATCTAATTGTTTATGCGGTCAGTTGTAATTGGACGCATGTGTAAAACTTTTTTATACGAATTAATATCAGTTTATTATGTAGAGGTTTGGATGTATTTTTTCAATATTAACTTGTGATAATGAAATGCAGATAAATCAGACTTTGGAGAAAATGAATGGTATTTTTTTACTCCAAGAGAAAGAAAGTATCCAAATGGGGTCAGACCTAATAGAGCAACTGTTTCTGGTTATTGGAAAGCCACTGGAACAGACAAATCAATCTTTAGTGGGTCTAAGCATATTGGAGTTAAGAAAGCTTTGGTATTTTACAAGGGTAGGCCACCAAAGGGAATCAAGACAGATTGGATTATGCATGAATATAGGTTAATTGGATCAAGAAGACAAGCTAATAGACAAATTGGGTCCATGAGGGTAAGCCTTTTAATCCTATATAGCTTTTAGAATTTCTAAGATTTGTTGAGTAAATTATCCGATTAGTCTTGAAATTGTAGGTGTCGAGCAGTTTGATTTTGGAATTAAAGAAATTTTAAATATTCGATCAAATAACATTTTTTTTACCGACCAATTTAGTATCTAAAATTGTCTTGTAAACCTTATCGGATCGACAAATTTTAATTTCAAGAAATCATTGTAGAATTTTGTTAATTTGAAGGGTTGTCTGACGTCTTTAATTGAGATTCCTCTTTGATTCGCTATAGCTATTTTAAATTTTTTTTTGGTTGAACTAACCTTGCCTTTGTGTTCATGTGTCATCAGCTAGATGATTGGGTCTTATGTAGGATCTATAAGAAGAAGAACATCACAAAATCATTGGAGACAAATGAAGACTACCCAACAAACCAAATCAATATGACACAAACAAATATTCATGATAGTGAACAAGAATTGGTGAAATTTCCAAGGACATGTTCCCTTACTAATCTTTTGAATATGGATTATATGGGACCAATATCACAAATATTATCAGATGGATCATACAATTCAACCTTTGAATTTCAAATTAATACAGCACATGGTGGAACAATAGACCCCTTTGTAAAACCACAGATGGTTGAAATGCCTAATAACAACACTTATGCAGCTGATCTAGAGAAGTACAATGTGAAACAAAATAGCAGCTTTGGGAACCAAGTATTTGATCGAAGGGAATAA
Protein sequence

>MS.gene53062.t1

MQQEGRSCEVWEGGLDGEVDVAGGFHPTDEELIMYYLCNQATSQPCPASIIPEVDIYKFDPWELPDKSDFGENEWYFFTPRERKYPNGVRPNRATVSGYWKATGTDKSIFSGSKHIGVKKALVFYKGRPPKGIKTDWIMHEYRLIGSRRQANRQIGSMRLDDWVLCRIYKKKNITKSLETNEDYPTNQINMTQTNIHDSEQELVKFPRTCSLTNLLNMDYMGPISQILSDGSYNSTFEFQINTAHGGTIDPFVKPQMVEMPNNNTYAADLEKYNVKQNSSFGNQVFDRRE