AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53067

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53067.t1 MTR_5g042030 90.625 288 22 2 1 287 1 284 1.38e-172 478
MS.gene53067.t1 MTR_4g082230 41.742 333 116 8 7 264 12 341 3.99e-75 235
MS.gene53067.t1 MTR_4g082290 49.801 251 78 5 5 210 10 257 1.96e-72 228
MS.gene53067.t1 MTR_6g012690 50.901 222 88 3 5 223 10 213 3.90e-71 223
MS.gene53067.t1 MTR_7g011170 59.877 162 65 0 5 166 10 171 1.61e-69 218
MS.gene53067.t1 MTR_2g011660 70.588 119 35 0 6 124 12 130 3.28e-61 197
MS.gene53067.t1 MTR_8g031360 58.974 156 62 2 5 158 11 166 9.39e-61 195
MS.gene53067.t1 MTR_4g091490 69.748 119 36 0 6 124 12 130 2.71e-60 196
MS.gene53067.t1 MTR_5g029840 66.935 124 41 0 5 128 10 133 1.07e-59 193
MS.gene53067.t1 MTR_3g074520 66.116 121 41 0 6 126 11 131 2.18e-59 193
MS.gene53067.t1 MTR_7g076740 56.410 156 66 2 6 159 11 166 6.26e-59 190
MS.gene53067.t1 MTR_4g478180 65.546 119 41 0 6 124 12 130 2.12e-57 188
MS.gene53067.t1 MTR_1g085040 66.929 127 42 0 7 133 12 138 3.20e-57 188
MS.gene53067.t1 MTR_2g089620 68.908 119 37 0 6 124 11 129 4.55e-57 186
MS.gene53067.t1 MTR_5g007370 63.636 121 44 0 6 126 11 131 2.12e-56 184
MS.gene53067.t1 MTR_1g085640 66.129 124 42 0 7 130 12 135 8.27e-56 185
MS.gene53067.t1 MTR_1g100653 51.163 172 72 3 6 176 11 171 1.07e-55 182
MS.gene53067.t1 MTR_7g110830 58.273 139 58 0 7 145 12 150 1.00e-54 181
MS.gene53067.t1 MTR_4g102380 63.866 119 43 0 5 123 10 128 1.31e-53 176
MS.gene53067.t1 MTR_4g073420 51.497 167 77 1 9 175 14 176 1.78e-53 176
MS.gene53067.t1 MTR_7g111290 67.200 125 41 0 7 131 12 136 3.02e-53 178
MS.gene53067.t1 MTR_3g461490 61.667 120 46 0 7 126 12 131 4.02e-53 176
MS.gene53067.t1 MTR_3g077110 53.416 161 58 2 7 167 12 155 1.34e-52 175
MS.gene53067.t1 MTR_1g112760 45.146 206 93 3 7 209 13 201 1.89e-52 171
MS.gene53067.t1 MTR_2g064160 63.478 115 42 0 7 121 11 125 2.13e-52 174
MS.gene53067.t1 MTR_4g105130 64.957 117 41 0 7 123 12 128 2.43e-52 175
MS.gene53067.t1 MTR_8g095390 66.957 115 38 0 9 123 14 128 2.58e-52 174
MS.gene53067.t1 MTR_5g078140 56.115 139 60 1 5 142 10 148 3.60e-51 171
MS.gene53067.t1 MTR_3g065440 63.115 122 45 0 5 126 10 131 8.58e-51 169
MS.gene53067.t1 MTR_5g079670 62.931 116 43 0 7 122 11 126 1.08e-50 166
MS.gene53067.t1 MTR_1g043080 67.290 107 35 0 6 112 11 117 1.91e-50 167
MS.gene53067.t1 MTR_3g097450 64.912 114 40 0 9 122 14 127 3.15e-50 167
MS.gene53067.t1 MTR_2g089450 67.593 108 35 0 6 113 11 118 6.29e-50 166
MS.gene53067.t1 MTR_1g076150 66.355 107 36 0 5 111 10 116 9.58e-50 165
MS.gene53067.t1 MTR_1g043050 67.290 107 35 0 6 112 11 117 1.58e-49 164
MS.gene53067.t1 MTR_2g089420 45.366 205 92 5 6 209 10 195 1.06e-48 167
MS.gene53067.t1 MTR_7g115650 62.617 107 40 0 5 111 10 116 1.24e-48 160
MS.gene53067.t1 MTR_0008s0390 65.421 107 37 0 6 112 12 118 1.55e-48 162
MS.gene53067.t1 MTR_7g096930 66.355 107 36 0 5 111 10 116 2.12e-48 162
MS.gene53067.t1 MTR_4g485530 62.832 113 42 0 9 121 14 126 2.35e-48 159
MS.gene53067.t1 MTR_6g009430 56.303 119 52 0 7 125 12 130 2.48e-48 164
MS.gene53067.t1 MTR_3g083540 57.983 119 50 0 5 123 39 157 2.51e-48 163
MS.gene53067.t1 MTR_0008s0470 64.486 107 38 0 6 112 12 118 4.60e-48 162
MS.gene53067.t1 MTR_2g067420 69.697 99 30 0 7 105 14 112 1.55e-47 162
MS.gene53067.t1 MTR_0251s0050 64.151 106 38 0 6 111 12 117 3.33e-47 159
MS.gene53067.t1 MTR_3g039990 40.860 186 94 2 5 185 11 185 5.94e-47 159
MS.gene53067.t1 MTR_8g027345 61.864 118 40 1 1 113 1 118 6.19e-47 159
MS.gene53067.t1 MTR_7g117730 61.682 107 41 0 5 111 10 116 5.42e-46 155
MS.gene53067.t1 MTR_2g099740 61.404 114 44 0 7 120 12 125 5.68e-46 159
MS.gene53067.t1 MTR_8g017440 60.177 113 45 0 7 119 12 124 1.17e-45 157
MS.gene53067.t1 MTR_0140s0030 58.879 107 44 0 5 111 11 117 3.22e-45 155
MS.gene53067.t1 MTR_0489s0020 58.879 107 44 0 5 111 11 117 3.22e-45 155
MS.gene53067.t1 MTR_7g087130 56.410 117 49 1 5 119 10 126 3.32e-45 155
MS.gene53067.t1 MTR_4g125520 54.745 137 53 1 6 142 11 138 5.11e-45 154
MS.gene53067.t1 MTR_7g010210 58.491 106 44 0 6 111 11 116 6.15e-45 155
MS.gene53067.t1 MTR_7g010210 58.491 106 44 0 6 111 11 116 7.37e-45 153
MS.gene53067.t1 MTR_8g098860 61.905 105 40 0 7 111 12 116 7.91e-45 154
MS.gene53067.t1 MTR_8g017540 60.177 113 45 0 7 119 58 170 1.01e-44 156
MS.gene53067.t1 MTR_4g065017 53.237 139 65 0 7 145 17 155 1.10e-44 154
MS.gene53067.t1 MTR_2g097910 57.031 128 54 1 7 134 20 146 1.59e-44 154
MS.gene53067.t1 MTR_8g017500 52.174 138 60 1 7 138 12 149 6.40e-44 152
MS.gene53067.t1 MTR_4g121460 59.813 107 43 0 5 111 10 116 1.26e-43 152
MS.gene53067.t1 MTR_4g057635 59.483 116 45 2 7 121 12 126 1.46e-43 151
MS.gene53067.t1 MTR_6g012180 61.000 100 39 0 6 105 11 110 2.44e-43 150
MS.gene53067.t1 MTR_1g100667 59.130 115 46 1 8 122 14 127 3.02e-43 149
MS.gene53067.t1 MTR_5g010020 63.636 99 36 0 7 105 12 110 4.72e-43 150
MS.gene53067.t1 MTR_1g017140 46.951 164 77 4 7 169 12 166 5.10e-43 150
MS.gene53067.t1 MTR_8g017340 60.526 114 44 1 7 119 12 125 6.63e-43 153
MS.gene53067.t1 MTR_2g034790 58.879 107 44 0 5 111 10 116 1.39e-42 149
MS.gene53067.t1 MTR_3g028740 62.857 105 39 0 7 111 22 126 1.98e-42 149
MS.gene53067.t1 MTR_1g017000 53.226 124 54 3 7 129 12 132 4.49e-42 145
MS.gene53067.t1 MTR_0063s0090 62.136 103 39 0 6 108 11 113 4.67e-42 144
MS.gene53067.t1 MTR_5g014990 59.813 107 42 1 7 112 12 118 4.81e-42 147
MS.gene53067.t1 MTR_0008s0280 59.615 104 42 0 6 109 11 114 1.19e-41 144
MS.gene53067.t1 MTR_3g103570 57.944 107 44 1 7 112 12 118 1.51e-41 146
MS.gene53067.t1 MTR_2g095520 65.000 100 34 1 7 105 12 111 1.92e-41 145
MS.gene53067.t1 MTR_8g017350 59.649 114 45 1 7 119 12 125 3.12e-41 150
MS.gene53067.t1 MTR_6g055910 59.434 106 43 0 8 113 15 120 6.52e-41 143
MS.gene53067.t1 MTR_3g052450 60.000 110 43 1 7 116 40 148 9.55e-41 148
MS.gene53067.t1 MTR_3g052430 60.000 110 43 1 7 116 41 149 1.23e-40 148
MS.gene53067.t1 MTR_8g017390 60.748 107 41 1 7 112 12 118 1.85e-40 146
MS.gene53067.t1 MTR_7g102110 55.963 109 47 1 7 114 12 120 5.09e-40 140
MS.gene53067.t1 MTR_4g097570 61.616 99 37 1 7 104 12 110 1.63e-39 140
MS.gene53067.t1 MTR_1g073170 53.333 120 52 1 8 127 21 136 5.13e-39 137
MS.gene53067.t1 MTR_8g042410 55.963 109 48 0 2 110 32 140 1.43e-38 142
MS.gene53067.t1 MTR_4g100720 56.731 104 45 0 7 110 13 116 1.49e-38 134
MS.gene53067.t1 MTR_3g011610 54.545 110 49 1 7 116 37 145 2.06e-38 141
MS.gene53067.t1 MTR_1g110460 52.252 111 53 0 7 117 26 136 2.65e-38 137
MS.gene53067.t1 MTR_6g090405 56.075 107 46 1 7 112 12 118 2.79e-38 135
MS.gene53067.t1 MTR_7g035075 57.143 105 45 0 7 111 14 118 3.34e-38 134
MS.gene53067.t1 MTR_1g062940 57.143 105 45 0 7 111 6 110 5.74e-38 134
MS.gene53067.t1 MTR_4g097570 61.000 100 37 2 7 104 12 111 6.10e-38 135
MS.gene53067.t1 MTR_5g079120 48.000 125 64 1 1 124 55 179 6.18e-38 136
MS.gene53067.t1 MTR_8g020490 59.223 103 42 0 9 111 10 112 6.37e-38 134
MS.gene53067.t1 MTR_1g086510 52.679 112 53 0 6 117 20 131 7.96e-38 134
MS.gene53067.t1 MTR_5g078860 53.571 112 52 0 1 112 1 112 1.10e-37 135
MS.gene53067.t1 MTR_1g045610 56.311 103 45 0 8 110 22 124 1.76e-37 133
MS.gene53067.t1 MTR_1g021230 57.692 104 44 0 7 110 57 160 1.84e-37 137
MS.gene53067.t1 MTR_5g078800 52.679 112 53 0 1 112 1 112 1.90e-37 134
MS.gene53067.t1 MTR_0193s0090 48.413 126 64 1 1 126 1 125 2.45e-37 132
MS.gene53067.t1 MTR_0247s0040 53.704 108 50 0 1 108 1 108 3.17e-37 130
MS.gene53067.t1 MTR_7g111290 69.892 93 28 0 39 131 2 94 3.51e-37 135
MS.gene53067.t1 MTR_5g079220 53.271 107 50 0 6 112 20 126 4.13e-37 133
MS.gene53067.t1 MTR_5g079290 50.000 112 56 0 1 112 11 122 5.47e-37 132
MS.gene53067.t1 MTR_4g128670 58.000 100 41 1 7 105 12 111 9.54e-37 134
MS.gene53067.t1 MTR_6g006030 56.190 105 46 0 7 111 14 118 1.00e-36 130
MS.gene53067.t1 MTR_3g045430 47.899 119 62 0 7 125 13 131 2.01e-36 132
MS.gene53067.t1 MTR_7g017260 51.754 114 53 1 1 112 19 132 2.95e-36 130
MS.gene53067.t1 MTR_0197s0010 55.000 100 45 0 12 111 6 105 7.75e-36 128
MS.gene53067.t1 MTR_5g078910 50.000 112 56 0 1 112 1 112 9.18e-36 130
MS.gene53067.t1 MTR_7g109320 60.748 107 42 0 5 111 10 116 1.71e-35 130
MS.gene53067.t1 MTR_2g088170 57.658 111 46 1 6 116 28 137 2.48e-35 132
MS.gene53067.t1 MTR_3g101290 60.784 102 39 1 9 110 37 137 3.11e-35 127
MS.gene53067.t1 MTR_1g086530 46.218 119 64 0 4 122 30 148 3.60e-35 128
MS.gene53067.t1 MTR_4g019370 53.659 123 55 2 9 131 38 158 3.66e-35 130
MS.gene53067.t1 MTR_5g016510 53.913 115 52 1 9 123 5 118 4.49e-35 129
MS.gene53067.t1 MTR_5g078950 50.926 108 53 0 1 108 1 108 5.05e-35 127
MS.gene53067.t1 MTR_4g094982 59.804 102 40 1 9 110 5 105 6.27e-35 127
MS.gene53067.t1 MTR_0001s0360 49.107 112 57 0 1 112 1 112 9.89e-35 126
MS.gene53067.t1 MTR_8g060940 51.402 107 52 0 1 107 1 107 2.19e-34 125
MS.gene53067.t1 MTR_5g062790 50.847 118 56 2 2 118 4 120 3.09e-34 126
MS.gene53067.t1 MTR_5g007300 67.949 78 25 0 6 83 63 140 3.61e-34 121
MS.gene53067.t1 MTR_5g088080 51.786 112 52 2 8 118 13 123 4.85e-34 125
MS.gene53067.t1 MTR_5g088150 51.786 112 52 2 8 118 13 123 4.85e-34 125
MS.gene53067.t1 MTR_5g488210 51.786 112 52 2 8 118 13 123 4.85e-34 125
MS.gene53067.t1 MTR_4g063100 50.485 103 51 0 8 110 8 110 5.37e-34 124
MS.gene53067.t1 MTR_5g088640 51.786 112 52 2 8 118 13 123 5.91e-34 125
MS.gene53067.t1 MTR_5g488170 51.786 112 52 2 8 118 13 123 9.44e-34 123
MS.gene53067.t1 MTR_2g033170 51.327 113 55 0 5 117 22 134 1.50e-33 125
MS.gene53067.t1 MTR_5g078930 54.455 101 46 0 8 108 10 110 3.31e-33 121
MS.gene53067.t1 MTR_2g096380 45.763 118 61 1 7 121 6 123 7.07e-33 121
MS.gene53067.t1 MTR_6g015455 39.181 171 99 2 9 179 5 170 1.83e-32 127
MS.gene53067.t1 MTR_4g029540 43.919 148 78 4 7 152 10 154 3.41e-32 120
MS.gene53067.t1 MTR_8g006470 30.526 285 172 8 7 283 10 276 4.19e-32 120
MS.gene53067.t1 MTR_1g083630 43.333 150 75 2 2 141 7 156 1.08e-31 124
MS.gene53067.t1 MTR_4g123040 46.667 120 64 0 5 124 22 141 1.56e-31 119
MS.gene53067.t1 MTR_5g088610 47.458 118 60 2 2 118 4 120 1.78e-29 114
MS.gene53067.t1 MTR_5g082910 53.535 99 45 1 9 107 19 116 7.78e-28 108
MS.gene53067.t1 MTR_7g061330 49.524 105 52 1 7 111 111 214 1.33e-27 112
MS.gene53067.t1 MTR_7g461410 49.524 105 52 1 7 111 111 214 1.33e-27 112
MS.gene53067.t1 MTR_7g061330 49.524 105 52 1 7 111 75 178 2.06e-27 111
MS.gene53067.t1 MTR_6g055910 62.162 74 28 0 40 113 18 91 1.96e-26 104
MS.gene53067.t1 MTR_7g037260 32.877 219 128 6 3 215 139 344 3.35e-26 105
MS.gene53067.t1 MTR_5g070020 45.192 104 56 1 7 110 120 222 4.06e-26 105
MS.gene53067.t1 MTR_3g463400 42.991 107 60 1 4 110 128 233 4.62e-26 107
MS.gene53067.t1 MTR_3g110028 43.810 105 58 1 7 111 83 186 1.69e-25 106
MS.gene53067.t1 MTR_1g026870 45.714 105 56 1 7 111 83 186 1.73e-25 106
MS.gene53067.t1 MTR_3g077650 44.144 111 59 2 1 110 173 281 3.36e-25 104
MS.gene53067.t1 MTR_4g063100 55.556 72 32 0 39 110 10 81 8.98e-25 99.4
MS.gene53067.t1 MTR_5g049190 49.474 95 47 1 9 103 19 112 1.00e-24 99.8
MS.gene53067.t1 MTR_4g082040 46.078 102 54 1 9 110 105 205 1.27e-24 102
MS.gene53067.t1 MTR_5g041570 44.660 103 56 1 9 111 134 235 1.88e-24 102
MS.gene53067.t1 MTR_6g027340 43.103 116 64 2 9 124 16 129 2.70e-24 97.8
MS.gene53067.t1 MTR_4g128190 39.344 183 80 6 6 174 10 175 4.04e-24 98.2
MS.gene53067.t1 MTR_6g027360 42.373 118 66 2 7 124 76 191 6.89e-24 99.0
MS.gene53067.t1 MTR_4g105660 45.794 107 51 2 7 110 178 280 8.97e-24 100
MS.gene53067.t1 MTR_7g451170 44.118 102 56 1 9 110 191 291 1.07e-23 99.8
MS.gene53067.t1 MTR_6g074860 47.423 97 48 2 9 104 4 98 1.79e-23 96.3
MS.gene53067.t1 MTR_3g089045 48.958 96 48 1 9 104 16 110 2.10e-23 97.4
MS.gene53067.t1 MTR_2g096380 52.778 72 34 0 39 110 19 90 1.14e-22 93.6
MS.gene53067.t1 MTR_6g027370 46.875 96 50 1 9 104 99 193 1.16e-22 96.3
MS.gene53067.t1 MTR_7g086960 45.098 102 55 1 9 110 89 189 1.77e-22 95.9
MS.gene53067.t1 MTR_0023s0210 51.282 78 38 0 6 83 6 83 1.93e-22 89.0
MS.gene53067.t1 MTR_4g088015 42.574 101 57 1 9 109 221 320 3.90e-22 95.9
MS.gene53067.t1 MTR_7g037130 32.569 218 128 7 3 214 139 343 3.99e-22 94.7
MS.gene53067.t1 MTR_7g035350 46.809 94 49 1 12 105 228 320 4.42e-22 95.5
MS.gene53067.t1 MTR_5g010650 29.091 275 145 8 7 234 108 379 1.39e-21 94.4
MS.gene53067.t1 MTR_1g085880 48.571 105 52 2 7 109 11 115 5.88e-21 88.6
MS.gene53067.t1 MTR_7g450950 38.400 125 67 3 9 133 157 271 1.62e-20 90.1
MS.gene53067.t1 MTR_1g057980 44.444 99 54 1 7 105 78 175 1.93e-20 89.4
MS.gene53067.t1 MTR_1g085770 48.571 105 52 2 7 109 11 115 2.41e-20 89.4
MS.gene53067.t1 MTR_7g061550 44.211 95 51 1 12 104 10 104 1.26e-17 82.0
MS.gene53067.t1 MTR_5g038910 37.374 99 61 1 12 110 29 126 3.40e-16 78.6
MS.gene53067.t1 MTR_5g038910 37.374 99 61 1 12 110 29 126 3.76e-16 78.2
MS.gene53067.t1 MTR_8g468380 34.343 99 64 1 12 110 25 122 1.24e-14 73.9
MS.gene53067.t1 MTR_1g008970 37.143 105 46 2 7 111 108 192 1.62e-12 66.2
MS.gene53067.t1 MTR_8g017480 60.976 41 16 0 7 47 12 52 9.00e-12 59.3
MS.gene53067.t1 MTR_6g055910 55.102 49 22 0 65 113 2 50 2.54e-11 62.4
MS.gene53067.t1 MTR_7g115550 34.483 87 56 1 7 93 5 90 4.79e-11 63.5
MS.gene53067.t1 MTR_6g080360 33.333 99 65 1 10 107 427 525 6.63e-11 63.2
MS.gene53067.t1 MTR_7g115550 34.483 87 56 1 7 93 5 90 8.26e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53067.t1 AT5G15310 45.196 281 136 5 5 271 10 286 4.00e-74 230
MS.gene53067.t1 AT5G15310 65.359 153 52 1 5 156 10 162 1.57e-71 223
MS.gene53067.t1 AT5G15310 65.359 153 52 1 5 156 10 162 1.71e-71 221
MS.gene53067.t1 AT3G01140 64.474 152 53 1 6 156 11 162 1.08e-70 222
MS.gene53067.t1 AT3G01140 64.474 152 53 1 6 156 54 205 4.07e-70 222
MS.gene53067.t1 AT3G02940 67.742 124 40 0 6 129 11 134 1.21e-61 197
MS.gene53067.t1 AT4G05100 70.588 119 35 0 6 124 12 130 1.27e-61 198
MS.gene53067.t1 AT3G61250 55.844 154 67 1 5 158 10 162 1.54e-61 197
MS.gene53067.t1 AT3G02940 67.742 124 40 0 6 129 11 134 2.45e-61 197
MS.gene53067.t1 AT3G02940 67.742 124 40 0 6 129 11 134 2.45e-61 197
MS.gene53067.t1 AT4G21440 69.748 119 36 0 6 124 11 129 1.56e-60 196
MS.gene53067.t1 AT4G28110 69.748 119 36 0 6 124 11 129 7.97e-60 192
MS.gene53067.t1 AT5G10280 66.942 121 40 0 6 126 11 131 2.90e-59 192
MS.gene53067.t1 AT5G16770 65.323 124 43 0 6 129 11 134 4.81e-59 191
MS.gene53067.t1 AT5G16770 65.323 124 43 0 6 129 11 134 4.81e-59 191
MS.gene53067.t1 AT5G65230 65.873 126 43 0 2 127 7 132 5.21e-59 191
MS.gene53067.t1 AT1G34670 47.030 202 90 3 6 207 11 195 7.11e-59 192
MS.gene53067.t1 AT5G16770 65.323 124 43 0 6 129 11 134 8.49e-59 191
MS.gene53067.t1 AT5G16770 65.323 124 43 0 6 129 11 134 8.49e-59 191
MS.gene53067.t1 AT5G54230 68.333 120 38 0 7 126 12 131 9.14e-59 190
MS.gene53067.t1 AT1G57560 61.972 142 48 1 7 142 12 153 1.67e-58 189
MS.gene53067.t1 AT5G61420 63.158 133 49 0 6 138 11 143 1.68e-58 191
MS.gene53067.t1 AT1G57560 66.667 126 42 0 7 132 12 137 9.42e-58 186
MS.gene53067.t1 AT4G17785 65.574 122 42 0 6 127 12 133 1.94e-57 188
MS.gene53067.t1 AT5G60890 61.481 135 52 0 6 140 11 145 2.92e-57 186
MS.gene53067.t1 AT4G17785 65.574 122 42 0 6 127 12 133 2.96e-57 187
MS.gene53067.t1 AT1G74080 68.333 120 38 0 3 122 8 127 6.14e-57 186
MS.gene53067.t1 AT1G18570 67.797 118 38 0 5 122 11 128 1.87e-56 185
MS.gene53067.t1 AT5G07700 64.800 125 44 0 6 130 11 135 2.60e-56 184
MS.gene53067.t1 AT5G07700 64.800 125 44 0 6 130 11 135 2.60e-56 184
MS.gene53067.t1 AT5G07690 64.516 124 44 0 6 129 11 134 5.51e-56 184
MS.gene53067.t1 AT5G26660 69.231 117 36 0 7 123 12 128 4.26e-55 182
MS.gene53067.t1 AT1G09540 64.062 128 46 0 7 134 12 139 7.05e-55 182
MS.gene53067.t1 AT4G22680 66.387 119 40 0 5 123 10 128 1.27e-54 178
MS.gene53067.t1 AT4G38620 66.087 115 39 0 9 123 14 128 3.24e-54 177
MS.gene53067.t1 AT1G74430 60.163 123 49 0 6 128 11 133 3.42e-54 177
MS.gene53067.t1 AT4G12350 65.546 119 41 0 5 123 10 128 3.78e-54 177
MS.gene53067.t1 AT4G34990 66.957 115 38 0 9 123 14 128 4.88e-54 177
MS.gene53067.t1 AT4G01680 67.241 116 38 0 7 122 12 127 1.83e-53 174
MS.gene53067.t1 AT3G23250 57.353 136 54 1 5 140 10 141 7.16e-53 174
MS.gene53067.t1 AT5G16600 65.289 121 42 0 5 125 10 130 7.65e-53 175
MS.gene53067.t1 AT1G18710 62.712 118 44 0 6 123 11 128 7.89e-53 173
MS.gene53067.t1 AT4G01680 67.241 116 38 0 7 122 12 127 8.05e-53 176
MS.gene53067.t1 AT3G13540 53.285 137 64 0 5 141 21 157 9.18e-53 173
MS.gene53067.t1 AT2G16720 55.797 138 61 0 7 144 12 149 1.70e-52 172
MS.gene53067.t1 AT5G56110 60.833 120 47 0 7 126 12 131 2.80e-52 174
MS.gene53067.t1 AT4G09460 64.035 114 41 0 9 122 14 127 2.04e-51 169
MS.gene53067.t1 AT3G12720 62.609 115 43 0 7 121 22 136 3.08e-51 171
MS.gene53067.t1 AT1G22640 62.069 116 44 0 7 122 12 127 1.31e-50 167
MS.gene53067.t1 AT1G06180 70.093 107 32 0 5 111 10 116 2.09e-50 167
MS.gene53067.t1 AT1G66230 61.157 121 47 0 5 125 10 130 2.73e-50 167
MS.gene53067.t1 AT1G35515 56.061 132 54 1 7 134 12 143 4.25e-50 165
MS.gene53067.t1 AT1G79180 56.618 136 58 1 7 141 14 149 2.24e-49 166
MS.gene53067.t1 AT4G01680 60.938 128 38 1 7 122 12 139 2.45e-49 167
MS.gene53067.t1 AT2G31180 66.355 107 36 0 5 111 10 116 2.98e-49 164
MS.gene53067.t1 AT1G56160 67.619 105 34 0 7 111 14 118 7.19e-49 164
MS.gene53067.t1 AT1G16490 55.474 137 58 1 7 140 14 150 2.96e-48 162
MS.gene53067.t1 AT5G62470 49.333 150 73 2 5 154 10 156 8.88e-48 163
MS.gene53067.t1 AT5G62320 57.600 125 46 1 5 122 11 135 1.24e-47 159
MS.gene53067.t1 AT5G14340 50.350 143 66 1 5 142 22 164 5.10e-47 159
MS.gene53067.t1 AT3G47600 59.091 110 45 0 5 114 10 119 9.44e-47 160
MS.gene53067.t1 AT5G35550 50.617 162 74 2 7 168 14 169 1.43e-46 157
MS.gene53067.t1 AT1G63910 58.974 117 48 0 7 123 12 128 5.93e-46 159
MS.gene53067.t1 AT1G08810 60.748 107 42 0 5 111 10 116 1.00e-45 155
MS.gene53067.t1 AT1G74650 59.091 110 45 0 5 114 10 119 1.23e-45 157
MS.gene53067.t1 AT5G62470 48.667 150 73 3 5 154 10 155 3.73e-45 156
MS.gene53067.t1 AT3G13890 63.208 106 39 0 7 112 12 117 6.01e-45 155
MS.gene53067.t1 AT3G12820 61.682 107 41 0 7 113 14 120 2.59e-44 150
MS.gene53067.t1 AT3G28910 56.250 112 49 0 6 117 11 122 3.55e-44 153
MS.gene53067.t1 AT5G12870 62.963 108 40 0 7 114 18 125 5.01e-44 151
MS.gene53067.t1 AT3G28470 57.983 119 50 0 7 125 12 130 2.47e-43 150
MS.gene53067.t1 AT1G79180 45.562 169 58 2 7 141 14 182 7.95e-43 149
MS.gene53067.t1 AT3G13890 58.261 115 39 1 7 112 12 126 6.06e-42 148
MS.gene53067.t1 AT5G49330 56.034 116 46 1 1 111 1 116 8.92e-42 147
MS.gene53067.t1 AT5G23000 59.813 107 42 1 7 112 12 118 1.27e-41 146
MS.gene53067.t1 AT3G62610 58.879 107 44 0 5 111 10 116 2.41e-41 146
MS.gene53067.t1 AT3G08500 62.857 105 39 0 7 111 30 134 2.85e-41 145
MS.gene53067.t1 AT5G57620 58.879 107 43 1 7 112 12 118 1.09e-40 144
MS.gene53067.t1 AT5G65790 59.813 107 42 1 7 112 12 118 1.12e-40 145
MS.gene53067.t1 AT2G36890 56.034 116 50 1 7 121 12 127 1.40e-40 142
MS.gene53067.t1 AT5G14750 55.769 104 46 0 8 111 17 120 1.41e-40 140
MS.gene53067.t1 AT3G49690 58.879 107 43 1 7 112 12 118 2.37e-40 142
MS.gene53067.t1 AT4G37780 55.046 109 48 1 5 112 10 118 2.42e-40 142
MS.gene53067.t1 AT2G36890 56.034 116 50 1 7 121 53 168 2.99e-40 143
MS.gene53067.t1 AT5G40350 56.881 109 47 0 7 115 17 125 3.02e-40 139
MS.gene53067.t1 AT4G26930 34.307 274 155 9 7 268 19 279 3.73e-40 144
MS.gene53067.t1 AT5G55020 58.182 110 45 1 7 116 26 134 1.40e-39 145
MS.gene53067.t1 AT5G40330 54.808 104 47 0 8 111 13 116 1.44e-39 138
MS.gene53067.t1 AT4G25560 56.604 106 46 0 8 113 11 116 1.76e-39 139
MS.gene53067.t1 AT2G26960 57.273 110 46 1 7 116 20 128 1.86e-39 143
MS.gene53067.t1 AT2G47460 56.075 107 47 0 5 111 10 116 2.86e-39 141
MS.gene53067.t1 AT5G26660 72.093 86 24 0 38 123 12 97 3.59e-39 139
MS.gene53067.t1 AT5G52260 60.377 106 42 0 8 113 13 118 4.95e-39 138
MS.gene53067.t1 AT5G06100 58.095 105 44 0 6 110 31 135 1.17e-38 141
MS.gene53067.t1 AT2G32460 53.846 117 53 1 6 122 5 120 2.23e-38 141
MS.gene53067.t1 AT3G48920 55.882 102 45 0 8 109 19 120 2.40e-38 136
MS.gene53067.t1 AT2G32460 53.846 117 53 1 6 122 17 132 2.52e-38 141
MS.gene53067.t1 AT5G06100 58.095 105 44 0 6 110 31 135 3.11e-38 141
MS.gene53067.t1 AT5G06100 58.095 105 44 0 6 110 31 135 3.11e-38 141
MS.gene53067.t1 AT5G06100 58.095 105 44 0 6 110 31 135 3.11e-38 141
MS.gene53067.t1 AT5G06100 58.095 105 44 0 6 110 31 135 3.11e-38 141
MS.gene53067.t1 AT3G27920 52.381 105 50 0 8 112 15 119 4.20e-38 134
MS.gene53067.t1 AT3G30210 57.692 104 44 0 6 109 26 129 4.83e-38 135
MS.gene53067.t1 AT3G53200 56.731 104 45 0 7 110 9 112 7.69e-38 134
MS.gene53067.t1 AT3G24310 57.143 105 45 0 6 110 17 121 8.55e-38 135
MS.gene53067.t1 AT3G27810 52.632 114 54 0 7 120 20 133 9.54e-38 133
MS.gene53067.t1 AT3G01530 55.238 105 47 0 7 111 25 129 1.10e-37 132
MS.gene53067.t1 AT3G11440 56.731 104 45 0 7 110 41 144 1.45e-37 138
MS.gene53067.t1 AT4G13480 57.282 103 44 0 8 110 7 109 2.82e-37 133
MS.gene53067.t1 AT1G48000 53.333 105 49 0 5 109 30 134 3.17e-37 132
MS.gene53067.t1 AT3G11440 56.731 104 45 0 7 110 41 144 3.56e-37 139
MS.gene53067.t1 AT3G11440 56.731 104 45 0 7 110 41 144 3.56e-37 139
MS.gene53067.t1 AT3G11440 56.731 104 45 0 7 110 41 144 3.56e-37 139
MS.gene53067.t1 AT5G52600 55.769 104 46 0 7 110 12 115 8.71e-37 130
MS.gene53067.t1 AT2G47190 49.550 111 56 0 7 117 20 130 9.60e-37 132
MS.gene53067.t1 AT1G25340 48.696 115 59 0 8 122 19 133 1.04e-36 132
MS.gene53067.t1 AT1G68320 47.414 116 61 0 7 122 19 134 4.53e-35 128
MS.gene53067.t1 AT5G35550 51.938 129 56 2 40 168 50 172 1.11e-34 126
MS.gene53067.t1 AT3G06490 48.387 124 64 0 1 124 13 136 3.55e-34 126
MS.gene53067.t1 AT1G66370 51.429 105 51 0 6 110 7 111 3.84e-34 124
MS.gene53067.t1 AT2G23290 58.824 102 41 1 9 110 13 113 1.46e-33 124
MS.gene53067.t1 AT4G37260 58.824 102 41 1 9 110 13 113 1.87e-33 124
MS.gene53067.t1 AT5G49620 45.968 124 67 0 1 124 20 143 9.05e-33 122
MS.gene53067.t1 AT3G46130 48.182 110 57 0 1 110 3 112 1.53e-32 120
MS.gene53067.t1 AT2G39880 57.843 102 42 1 9 110 50 150 1.77e-32 123
MS.gene53067.t1 AT3G60460 51.376 109 51 2 7 114 11 118 1.86e-32 121
MS.gene53067.t1 AT5G59780 49.515 103 52 0 8 110 9 111 1.91e-32 120
MS.gene53067.t1 AT5G67300 54.902 102 45 1 9 110 6 106 2.98e-32 121
MS.gene53067.t1 AT1G66380 54.286 105 48 0 6 110 7 111 5.67e-32 115
MS.gene53067.t1 AT1G25340 46.087 115 57 1 8 122 19 128 8.79e-32 119
MS.gene53067.t1 AT1G25340 46.087 115 57 1 8 122 19 128 1.68e-31 119
MS.gene53067.t1 AT3G09230 55.769 104 45 1 9 112 55 157 1.89e-31 120
MS.gene53067.t1 AT2G26950 49.091 110 55 1 7 116 16 124 2.29e-31 120
MS.gene53067.t1 AT3G50060 52.941 102 47 1 9 110 6 106 4.06e-31 118
MS.gene53067.t1 AT1G56650 46.565 131 62 1 6 128 7 137 7.77e-31 116
MS.gene53067.t1 AT1G66390 52.381 105 50 0 6 110 7 111 3.29e-30 114
MS.gene53067.t1 AT3G55730 56.863 102 43 1 9 110 56 156 4.75e-30 117
MS.gene53067.t1 AT3G47600 49.167 120 55 3 40 154 39 157 9.15e-30 115
MS.gene53067.t1 AT3G12820 69.014 71 22 0 43 113 2 72 1.61e-29 110
MS.gene53067.t1 AT5G49620 41.304 138 67 1 1 124 20 157 3.25e-29 113
MS.gene53067.t1 AT5G14750 59.740 77 28 1 35 111 13 86 9.62e-29 108
MS.gene53067.t1 AT5G40350 61.842 76 29 0 40 115 5 80 9.83e-29 108
MS.gene53067.t1 AT3G53200 65.753 73 25 0 38 110 7 79 2.72e-28 108
MS.gene53067.t1 AT5G58850 44.800 125 63 2 7 131 103 221 2.94e-28 112
MS.gene53067.t1 AT1G22640 65.714 70 24 0 53 122 1 70 6.59e-28 107
MS.gene53067.t1 AT1G71030 54.217 83 38 0 46 128 5 87 1.81e-27 105
MS.gene53067.t1 AT1G71030 54.217 83 38 0 46 128 19 101 2.70e-27 105
MS.gene53067.t1 AT5G11050 40.299 134 74 2 9 142 105 232 1.13e-26 108
MS.gene53067.t1 AT3G27810 55.556 81 36 0 40 120 4 84 1.21e-26 103
MS.gene53067.t1 AT5G02320 46.667 105 55 1 7 111 125 228 4.12e-26 107
MS.gene53067.t1 AT5G02320 46.667 105 55 1 7 111 125 228 4.12e-26 107
MS.gene53067.t1 AT5G02320 46.667 105 55 1 7 111 65 168 4.67e-26 107
MS.gene53067.t1 AT4G32730 46.667 105 55 1 7 111 85 188 6.78e-26 107
MS.gene53067.t1 AT4G32730 46.667 105 55 1 7 111 85 188 6.78e-26 107
MS.gene53067.t1 AT4G32730 46.667 105 55 1 7 111 85 188 6.78e-26 107
MS.gene53067.t1 AT4G32730 46.667 105 55 1 7 111 85 188 6.78e-26 107
MS.gene53067.t1 AT4G32730 46.667 105 55 1 7 111 85 188 8.56e-26 107
MS.gene53067.t1 AT1G18960 40.945 127 71 3 1 126 1 124 8.95e-26 103
MS.gene53067.t1 AT5G40360 45.714 105 55 2 7 111 156 258 9.43e-26 104
MS.gene53067.t1 AT3G09370 47.222 108 48 2 7 110 133 235 1.11e-25 106
MS.gene53067.t1 AT3G09370 47.222 108 48 2 7 110 128 230 1.17e-25 106
MS.gene53067.t1 AT3G09370 47.222 108 48 2 7 110 141 243 1.26e-25 106
MS.gene53067.t1 AT4G18770 45.714 105 56 1 7 111 215 318 1.92e-25 105
MS.gene53067.t1 AT1G69560 44.340 106 58 1 6 111 104 208 3.32e-25 102
MS.gene53067.t1 AT1G69560 44.340 106 58 1 6 111 120 224 3.60e-25 103
MS.gene53067.t1 AT1G17950 45.098 102 55 1 9 110 5 105 5.40e-25 100
MS.gene53067.t1 AT3G27785 41.964 112 64 1 2 113 182 292 8.71e-25 103
MS.gene53067.t1 AT5G59780 56.164 73 32 0 38 110 18 90 9.35e-25 99.4
MS.gene53067.t1 AT1G26780 47.115 104 54 1 7 110 96 198 1.26e-24 100
MS.gene53067.t1 AT1G26780 47.115 104 54 1 7 110 96 198 1.37e-24 101
MS.gene53067.t1 AT3G46130 56.164 73 32 0 38 110 18 90 1.93e-24 99.0
MS.gene53067.t1 AT5G15310 34.300 207 118 5 79 271 5 207 3.82e-24 98.2
MS.gene53067.t1 AT3G46130 55.556 72 32 0 39 110 9 80 5.02e-24 97.4
MS.gene53067.t1 AT5G11510 40.952 105 61 1 7 111 79 182 5.58e-24 102
MS.gene53067.t1 AT5G11510 40.952 105 61 1 7 111 79 182 5.58e-24 102
MS.gene53067.t1 AT5G11510 40.952 105 61 1 7 111 79 182 5.58e-24 102
MS.gene53067.t1 AT5G17800 47.059 102 53 1 9 110 93 193 7.33e-24 99.0
MS.gene53067.t1 AT5G11510 40.952 105 61 1 7 111 79 182 7.84e-24 101
MS.gene53067.t1 AT5G11510 40.952 105 61 1 7 111 79 182 7.89e-24 101
MS.gene53067.t1 AT3G23250 54.545 88 36 1 53 140 1 84 3.67e-23 95.1
MS.gene53067.t1 AT1G73410 46.078 102 54 1 9 110 6 106 4.74e-23 95.5
MS.gene53067.t1 AT1G73410 46.078 102 54 1 9 110 6 106 7.29e-23 94.0
MS.gene53067.t1 AT4G33450 41.748 103 59 1 8 110 18 119 8.82e-23 94.7
MS.gene53067.t1 AT3G29020 43.269 104 56 2 9 111 65 166 6.45e-22 92.0
MS.gene53067.t1 AT3G29020 43.269 104 56 2 9 111 67 168 2.09e-21 92.0
MS.gene53067.t1 AT1G66380 52.439 82 39 0 6 87 7 88 2.18e-21 87.0
MS.gene53067.t1 AT5G39700 44.231 104 56 2 10 113 57 158 3.76e-21 89.0
MS.gene53067.t1 AT1G66380 59.722 72 29 0 39 110 7 78 6.70e-21 85.9
MS.gene53067.t1 AT5G61420 61.905 63 24 0 76 138 2 64 2.16e-19 86.3
MS.gene53067.t1 AT4G00540 43.519 108 57 2 7 111 101 207 2.81e-19 87.4
MS.gene53067.t1 AT4G00540 43.519 108 57 2 7 111 99 205 4.49e-19 87.0
MS.gene53067.t1 AT5G14750 55.932 59 26 0 53 111 1 59 6.49e-19 81.6
MS.gene53067.t1 AT5G14750 55.932 59 26 0 53 111 1 59 6.49e-19 81.6
MS.gene53067.t1 AT2G25230 43.000 100 55 2 12 111 29 126 1.08e-18 83.2
MS.gene53067.t1 AT2G02820 40.404 99 58 1 12 110 33 130 2.61e-18 84.0
MS.gene53067.t1 AT2G02820 40.404 99 58 1 12 110 33 130 3.95e-18 84.3
MS.gene53067.t1 AT1G14350 36.066 122 69 2 12 133 28 140 4.38e-18 84.0
MS.gene53067.t1 AT1G14350 36.066 122 69 2 12 133 28 140 4.38e-18 84.0
MS.gene53067.t1 AT2G02820 40.404 99 58 1 12 110 33 130 4.76e-18 84.3
MS.gene53067.t1 AT2G37630 45.263 95 50 1 12 104 7 101 9.10e-18 82.8
MS.gene53067.t1 AT4G28110 71.429 42 12 0 83 124 4 45 1.17e-15 74.3
MS.gene53067.t1 AT3G18100 39.583 96 57 1 8 103 497 591 8.13e-15 75.1
MS.gene53067.t1 AT3G18100 39.583 96 57 1 8 103 545 639 8.20e-15 75.1
MS.gene53067.t1 AT5G40430 36.190 105 64 3 7 111 52 153 9.91e-15 72.8
MS.gene53067.t1 AT3G18100 39.583 96 57 1 8 103 384 478 1.34e-14 74.3
MS.gene53067.t1 AT3G18100 39.583 96 57 1 8 103 332 426 1.40e-14 74.3
MS.gene53067.t1 AT4G25560 58.333 48 20 0 66 113 3 50 6.52e-13 67.0
MS.gene53067.t1 AT1G74430 49.123 57 29 0 72 128 8 64 2.38e-12 65.1
MS.gene53067.t1 AT1G74650 61.905 42 16 0 73 114 2 43 3.80e-12 65.5
MS.gene53067.t1 AT5G14340 46.154 65 30 1 83 142 10 74 1.67e-11 62.4
MS.gene53067.t1 AT1G09770 35.632 87 55 1 7 93 5 90 2.08e-11 64.7
MS.gene53067.t1 AT1G14350 37.349 83 44 1 51 133 23 97 2.49e-11 63.9
MS.gene53067.t1 AT1G14350 37.349 83 44 1 51 133 23 97 2.49e-11 63.9
MS.gene53067.t1 AT3G28910 55.556 45 20 0 73 117 2 46 4.02e-11 62.4

Find 54 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGCTTCTTGTCTTCTTT+TGG 0.163262 5.4:-30869310 None:intergenic
TTGTTGTTGTTGTTAGATTT+TGG 0.239668 5.4:-30870724 None:intergenic
CTTCAATGGTGACACTTTCA+TGG 0.293424 5.4:+30871158 MS.gene53067:CDS
CTTACCAATGAATTGAAGTT+TGG 0.297168 5.4:+30871003 MS.gene53067:CDS
TTCTCCAAACTTCAATTCAT+TGG 0.311193 5.4:-30871007 None:intergenic
TTCATGGACTTCAATGGAAA+TGG 0.348493 5.4:+30871174 MS.gene53067:CDS
TGCTGTAATGTTACCTGCTC+TGG 0.350524 5.4:-30869380 None:intergenic
CTCAACATGGCCATAGAAAC+TGG 0.356479 5.4:+30869344 MS.gene53067:CDS
GCAAAGAATGCCAGTTTCTA+TGG 0.366432 5.4:-30869354 None:intergenic
ATACATTGCATTGTTGTGTT+TGG 0.368617 5.4:-30870896 None:intergenic
GTAAGACAAGGAAGCTCATT+AGG 0.370376 5.4:-30870985 None:intergenic
CATTATCTGTTCTCCTTGGC+AGG 0.386660 5.4:-30870627 None:intergenic
ATTCAGCTTCATGCACTTCT+CGG 0.394016 5.4:+30869579 MS.gene53067:CDS
CATGAAAGTGTCACCATTGA+AGG 0.398904 5.4:-30871157 None:intergenic
AAGAAAAGACTTATCAGAAT+GGG 0.406171 5.4:+30870679 MS.gene53067:CDS
GAAGGAAGATCATCAATGTT+AGG 0.409220 5.4:+30870817 MS.gene53067:CDS
TTGAAGTTTGGAGAAGGCTT+AGG 0.428185 5.4:+30871015 MS.gene53067:CDS
GCATTTGGAGATTCCTTCAA+TGG 0.432077 5.4:+30871144 MS.gene53067:CDS
GACACTTTCATGGACTTCAA+TGG 0.435257 5.4:+30871168 MS.gene53067:CDS
ATAATGAAATAAAGAATCAT+TGG 0.440805 5.4:+30870644 MS.gene53067:CDS
TTCAGCTTCATGCACTTCTC+GGG 0.444052 5.4:+30869580 MS.gene53067:CDS
ATTTCATTATCTGTTCTCCT+TGG 0.449445 5.4:-30870631 None:intergenic
TATCAAACAAGTTGCTCAAT+GGG 0.451989 5.4:+30870774 MS.gene53067:CDS
ATGGTGGCATTGGATGCATT+TGG 0.456791 5.4:+30871129 MS.gene53067:CDS
TTGAAAATGAGTAGGGCTCT+AGG 0.461511 5.4:+30869265 None:intergenic
CATTCTTTGCCCTCCAGAGC+AGG 0.475255 5.4:+30869367 MS.gene53067:CDS
CTATCAAACAAGTTGCTCAA+TGG 0.479623 5.4:+30870773 MS.gene53067:CDS
GCAAGGTGATGATGATCTAA+TGG 0.487418 5.4:+30871110 MS.gene53067:CDS
CAAGAAAAGACTTATCAGAA+TGG 0.489082 5.4:+30870678 MS.gene53067:CDS
TGGCAGGAGAGCTGCTATTG+TGG 0.496430 5.4:-30870611 None:intergenic
TTGTGATTTGAAAATGAGTA+GGG 0.505830 5.4:+30869258 None:intergenic
TATATAGGTCTTAGAAGATG+TGG 0.511267 5.4:+30869471 MS.gene53067:intron
TGTTAGTAATAATAATATCA+TGG 0.514632 5.4:+30871050 MS.gene53067:CDS
TGATGATCTAATGGTGGCAT+TGG 0.519218 5.4:+30871119 MS.gene53067:CDS
AATGTTAGATTAGAAGCTGA+AGG 0.524088 5.4:+30870799 MS.gene53067:CDS
TGAAAATGAGTAGGGCTCTA+GGG 0.531154 5.4:+30869266 None:intergenic
TTTGTGATTTGAAAATGAGT+AGG 0.538258 5.4:+30869257 None:intergenic
AATGAATTGAAGTTTGGAGA+AGG 0.539551 5.4:+30871009 MS.gene53067:CDS
CAATAGCAGCTCTCCTGCCA+AGG 0.575828 5.4:+30870614 MS.gene53067:CDS
AGGGCTCTAGGGTTGAAGAA+AGG 0.597288 5.4:+30869277 MS.gene53067:CDS
TTCAATTCATTGGTAAGACA+AGG 0.599973 5.4:-30870997 None:intergenic
TGTAATGTTACCTGCTCTGG+AGG 0.601213 5.4:-30869377 None:intergenic
GAACTTGATGAAGATAGTAA+AGG 0.608417 5.4:-30870856 None:intergenic
GTTTATGTGTCAAAATTGCA+AGG 0.632220 5.4:+30871093 MS.gene53067:CDS
GAAAGAGTTGCAGACTGAGG+TGG 0.635300 5.4:+30869493 MS.gene53067:CDS
AGAAAAGACTTATCAGAATG+GGG 0.641194 5.4:+30870680 MS.gene53067:CDS
CTCATTAGGAAAGCTCAATG+TGG 0.651845 5.4:-30870971 None:intergenic
ATAGCATATGTTACTCAACA+TGG 0.670094 5.4:+30869331 MS.gene53067:CDS
ACGAGGAAACTTCAGCTCAG+AGG 0.673756 5.4:+30869542 MS.gene53067:CDS
GTAATGTTACCTGCTCTGGA+GGG 0.677991 5.4:-30869376 None:intergenic
CTGAATCCTGATATAAAACG+AGG 0.681945 5.4:+30869525 MS.gene53067:CDS
TAGGGTTGAAGAAAGGACCA+TGG 0.703964 5.4:+30869284 MS.gene53067:CDS
AGGTGATGATGATCTAATGG+TGG 0.729997 5.4:+30871113 MS.gene53067:CDS
GTGGAAAGAGTTGCAGACTG+AGG 0.736692 5.4:+30869490 MS.gene53067:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTAGAAAGAAAAAAA+TGG - chr5.4:30870268-30870287 None:intergenic 10.0%
!! ATAATGAAATAAAGAATCAT+TGG + chr5.4:30870644-30870663 MS.gene53067:CDS 15.0%
!! TGTTAGTAATAATAATATCA+TGG + chr5.4:30871050-30871069 MS.gene53067:CDS 15.0%
!!! TTTTATCTTATACTTAAGAT+CGG - chr5.4:30870112-30870131 None:intergenic 15.0%
!!! TTTTGAAAAAGCAAAATAAT+GGG + chr5.4:30869854-30869873 MS.gene53067:intron 15.0%
!!! TTTTTGAAAAAGCAAAATAA+TGG + chr5.4:30869853-30869872 MS.gene53067:intron 15.0%
!! AGATAAAATTGAGTCAAAAA+AGG + chr5.4:30870124-30870143 MS.gene53067:intron 20.0%
!! ATATATAAACTCAAGATTAC+TGG - chr5.4:30869456-30869475 None:intergenic 20.0%
!! ATATTACTCATAATTGAAGA+TGG - chr5.4:30869428-30869447 None:intergenic 20.0%
!! ATCAACTTTCTTTGATATTT+AGG + chr5.4:30870169-30870188 MS.gene53067:intron 20.0%
!! GTAATCTTGAGTTTATATAT+AGG + chr5.4:30869456-30869475 MS.gene53067:intron 20.0%
!! TGTATATTAACCTATTTACA+TGG + chr5.4:30869657-30869676 MS.gene53067:intron 20.0%
!! TTAAATGTAACAACATCTAT+TGG + chr5.4:30870039-30870058 MS.gene53067:intron 20.0%
!!! AGTCAAGTCTTAATATTTTT+TGG - chr5.4:30870489-30870508 None:intergenic 20.0%
! AAGAAAAGACTTATCAGAAT+GGG + chr5.4:30870679-30870698 MS.gene53067:CDS 25.0%
! ACTTACAAGCAAATTAAAGT+AGG + chr5.4:30870204-30870223 MS.gene53067:intron 25.0%
! CTTACAAGCAAATTAAAGTA+GGG + chr5.4:30870205-30870224 MS.gene53067:intron 25.0%
! CTTTCTTCATATTCTCTATT+TGG + chr5.4:30869627-30869646 MS.gene53067:intron 25.0%
! GACAATGCATAATATATGTA+AGG + chr5.4:30870435-30870454 MS.gene53067:intron 25.0%
! TCAGTCAAAAAAGAAGAATA+AGG + chr5.4:30869924-30869943 MS.gene53067:intron 25.0%
! TTGATAAAGAGTAATGTTCA+TGG + chr5.4:30870559-30870578 MS.gene53067:intron 25.0%
!! TGACTGATAACTTTGTATTT+TGG - chr5.4:30869911-30869930 None:intergenic 25.0%
!!! CAAGTCTTAATATTTTTTGG+TGG - chr5.4:30870486-30870505 None:intergenic 25.0%
!!! TCTCAAAGTTTTAGAGTTTT+TGG - chr5.4:30869758-30869777 None:intergenic 25.0%
!!! TGATAACTTTGTATTTTGGT+TGG - chr5.4:30869907-30869926 None:intergenic 25.0%
!!! TTGTTGTTGTTGTTAGATTT+TGG - chr5.4:30870727-30870746 None:intergenic 25.0%
AATGAATTGAAGTTTGGAGA+AGG + chr5.4:30871009-30871028 MS.gene53067:CDS 30.0%
AATGTTAGATTAGAAGCTGA+AGG + chr5.4:30870799-30870818 MS.gene53067:CDS 30.0%
AGAAAAGACTTATCAGAATG+GGG + chr5.4:30870680-30870699 MS.gene53067:CDS 30.0%
ATACATTGCATTGTTGTGTT+TGG - chr5.4:30870899-30870918 None:intergenic 30.0%
ATAGCATATGTTACTCAACA+TGG + chr5.4:30869331-30869350 MS.gene53067:CDS 30.0%
ATTATTATCTGTGTTGTGTC+CGG - chr5.4:30870002-30870021 None:intergenic 30.0%
ATTTCATTATCTGTTCTCCT+TGG - chr5.4:30870634-30870653 None:intergenic 30.0%
CAAGAAAAGACTTATCAGAA+TGG + chr5.4:30870678-30870697 MS.gene53067:CDS 30.0%
CATAATATATGTAAGGTCTG+GGG + chr5.4:30870442-30870461 MS.gene53067:intron 30.0%
CTTACCAATGAATTGAAGTT+TGG + chr5.4:30871003-30871022 MS.gene53067:CDS 30.0%
GAACATATAATGTCAGTATC+TGG - chr5.4:30870246-30870265 None:intergenic 30.0%
GAACTTGATGAAGATAGTAA+AGG - chr5.4:30870859-30870878 None:intergenic 30.0%
GCATAATATATGTAAGGTCT+GGG + chr5.4:30870441-30870460 MS.gene53067:intron 30.0%
GTTTATGTGTCAAAATTGCA+AGG + chr5.4:30871093-30871112 MS.gene53067:CDS 30.0%
TATATAGGTCTTAGAAGATG+TGG + chr5.4:30869471-30869490 MS.gene53067:intron 30.0%
TATCAAACAAGTTGCTCAAT+GGG + chr5.4:30870774-30870793 MS.gene53067:CDS 30.0%
TCGTAACTTTGTATTTGTGT+TGG - chr5.4:30869954-30869973 None:intergenic 30.0%
TGATACAATGATACTAACAC+CGG + chr5.4:30869980-30869999 MS.gene53067:intron 30.0%
TGCATAATATATGTAAGGTC+TGG + chr5.4:30870440-30870459 MS.gene53067:intron 30.0%
TTCAATTCATTGGTAAGACA+AGG - chr5.4:30871000-30871019 None:intergenic 30.0%
TTCTCCAAACTTCAATTCAT+TGG - chr5.4:30871010-30871029 None:intergenic 30.0%
! AAGTTTCCTCGTTTTATATC+AGG - chr5.4:30869534-30869553 None:intergenic 30.0%
! ATAAGCTTCTTGTCTTCTTT+TGG - chr5.4:30869313-30869332 None:intergenic 30.0%
! GAACAAGTGAGATATTCTTT+TGG + chr5.4:30869602-30869621 MS.gene53067:intron 30.0%
! TAAGCTTCTTGTCTTCTTTT+GGG - chr5.4:30869312-30869331 None:intergenic 30.0%
!! TCAAAGAAAGTTGATGCATT+TGG - chr5.4:30870164-30870183 None:intergenic 30.0%
AACAATATGCACTTCACAGA+TGG + chr5.4:30870587-30870606 MS.gene53067:intron 35.0%
AGTGCAGTTTCCATGTAAAT+AGG - chr5.4:30869670-30869689 None:intergenic 35.0%
CAACAACAACAACAACAACA+AGG + chr5.4:30870735-30870754 MS.gene53067:CDS 35.0%
CAAGCAAATTAAAGTAGGGA+AGG + chr5.4:30870209-30870228 MS.gene53067:intron 35.0%
CTATCAAACAAGTTGCTCAA+TGG + chr5.4:30870773-30870792 MS.gene53067:CDS 35.0%
CTGAATCCTGATATAAAACG+AGG + chr5.4:30869525-30869544 MS.gene53067:CDS 35.0%
GAAGGAAGATCATCAATGTT+AGG + chr5.4:30870817-30870836 MS.gene53067:CDS 35.0%
TTATGTGACCTTGTCTCATT+GGG - chr5.4:30869809-30869828 None:intergenic 35.0%
TTCATGGACTTCAATGGAAA+TGG + chr5.4:30871174-30871193 MS.gene53067:CDS 35.0%
! AAGCTTCTTGTCTTCTTTTG+GGG - chr5.4:30869311-30869330 None:intergenic 35.0%
! CTCGTTTTATATCAGGATTC+AGG - chr5.4:30869527-30869546 None:intergenic 35.0%
!!! GTTAGATTTTGGTTTGTGAG+TGG - chr5.4:30870716-30870735 None:intergenic 35.0%
ATTCAGCTTCATGCACTTCT+CGG + chr5.4:30869579-30869598 MS.gene53067:CDS 40.0%
CTCATTAGGAAAGCTCAATG+TGG - chr5.4:30870974-30870993 None:intergenic 40.0%
CTTATGTGACCTTGTCTCAT+TGG - chr5.4:30869810-30869829 None:intergenic 40.0%
CTTCAATGGTGACACTTTCA+TGG + chr5.4:30871158-30871177 MS.gene53067:CDS 40.0%
GACACTTTCATGGACTTCAA+TGG + chr5.4:30871168-30871187 MS.gene53067:CDS 40.0%
GCAAAGAATGCCAGTTTCTA+TGG - chr5.4:30869357-30869376 None:intergenic 40.0%
GCATTTGGAGATTCCTTCAA+TGG + chr5.4:30871144-30871163 MS.gene53067:CDS 40.0%
GTAAGACAAGGAAGCTCATT+AGG - chr5.4:30870988-30871007 None:intergenic 40.0%
TGATGATCTAATGGTGGCAT+TGG + chr5.4:30871119-30871138 MS.gene53067:CDS 40.0%
TTGAAGTTTGGAGAAGGCTT+AGG + chr5.4:30871015-30871034 MS.gene53067:CDS 40.0%
! AGGTGATGATGATCTAATGG+TGG + chr5.4:30871113-30871132 MS.gene53067:CDS 40.0%
! GCAAGGTGATGATGATCTAA+TGG + chr5.4:30871110-30871129 MS.gene53067:CDS 40.0%
!! CATGAAAGTGTCACCATTGA+AGG - chr5.4:30871160-30871179 None:intergenic 40.0%
!!! AATATTTTTTGGTGGTGCCG+CGG - chr5.4:30870478-30870497 None:intergenic 40.0%
!!! AGATTTTGGTTTGTGAGTGG+TGG - chr5.4:30870713-30870732 None:intergenic 40.0%
!!! GATTTTGGTTTGTGAGTGGT+GGG - chr5.4:30870712-30870731 None:intergenic 40.0%
ACCTTGTCTCATTGGGAGTA+GGG - chr5.4:30869802-30869821 None:intergenic 45.0%
CATTATCTGTTCTCCTTGGC+AGG - chr5.4:30870630-30870649 None:intergenic 45.0%
CTCAACATGGCCATAGAAAC+TGG + chr5.4:30869344-30869363 MS.gene53067:CDS 45.0%
TAGGGTTGAAGAAAGGACCA+TGG + chr5.4:30869284-30869303 MS.gene53067:CDS 45.0%
TGCTGTAATGTTACCTGCTC+TGG - chr5.4:30869383-30869402 None:intergenic 45.0%
TGTAATGTTACCTGCTCTGG+AGG - chr5.4:30869380-30869399 None:intergenic 45.0%
TTCAGCTTCATGCACTTCTC+GGG + chr5.4:30869580-30869599 MS.gene53067:CDS 45.0%
! ATGGTGGCATTGGATGCATT+TGG + chr5.4:30871129-30871148 MS.gene53067:CDS 45.0%
! GTAATGTTACCTGCTCTGGA+GGG - chr5.4:30869379-30869398 None:intergenic 45.0%
!! CATCTATTGGTTTGTGTCGC+AGG + chr5.4:30870052-30870071 MS.gene53067:intron 45.0%
!! TTGTCTTCTTTTGGGGACCA+TGG - chr5.4:30869304-30869323 None:intergenic 45.0%
ACCCTACTCCCAATGAGACA+AGG + chr5.4:30869798-30869817 MS.gene53067:intron 50.0%
ACGAGGAAACTTCAGCTCAG+AGG + chr5.4:30869542-30869561 MS.gene53067:CDS 50.0%
GAAAGAGTTGCAGACTGAGG+TGG + chr5.4:30869493-30869512 MS.gene53067:CDS 50.0%
GACCTTGTCTCATTGGGAGT+AGG - chr5.4:30869803-30869822 None:intergenic 50.0%
GTGGAAAGAGTTGCAGACTG+AGG + chr5.4:30869490-30869509 MS.gene53067:CDS 50.0%
! TGAGCTCAGCTCAGTTGGTA+TGG + chr5.4:30870413-30870432 MS.gene53067:intron 50.0%
!! AGGGCTCTAGGGTTGAAGAA+AGG + chr5.4:30869277-30869296 MS.gene53067:CDS 50.0%
CAATAGCAGCTCTCCTGCCA+AGG + chr5.4:30870614-30870633 MS.gene53067:CDS 55.0%
CATTCTTTGCCCTCCAGAGC+AGG + chr5.4:30869367-30869386 MS.gene53067:CDS 55.0%
CCAACTGAGCTGAGCTCACA+AGG - chr5.4:30870411-30870430 None:intergenic 55.0%
CCTTGTGAGCTCAGCTCAGT+TGG + chr5.4:30870408-30870427 MS.gene53067:intron 55.0%
TGGCAGGAGAGCTGCTATTG+TGG - chr5.4:30870614-30870633 None:intergenic 55.0%
! TCTGGGGTTCAAACCAACCG+CGG + chr5.4:30870458-30870477 MS.gene53067:intron 55.0%
!!! TTTTTTGGTGGTGCCGCGGT+TGG - chr5.4:30870474-30870493 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 30869271 30871221 30869271 ID=MS.gene53067
chr5.4 mRNA 30869271 30871221 30869271 ID=MS.gene53067.t1;Parent=MS.gene53067
chr5.4 exon 30869271 30869388 30869271 ID=MS.gene53067.t1.exon1;Parent=MS.gene53067.t1
chr5.4 CDS 30869271 30869388 30869271 ID=cds.MS.gene53067.t1;Parent=MS.gene53067.t1
chr5.4 exon 30869478 30869607 30869478 ID=MS.gene53067.t1.exon2;Parent=MS.gene53067.t1
chr5.4 CDS 30869478 30869607 30869478 ID=cds.MS.gene53067.t1;Parent=MS.gene53067.t1
chr5.4 exon 30870606 30871221 30870606 ID=MS.gene53067.t1.exon3;Parent=MS.gene53067.t1
chr5.4 CDS 30870606 30871221 30870606 ID=cds.MS.gene53067.t1;Parent=MS.gene53067.t1
Gene Sequence

>MS.gene53067

ATGAGTAGGGCTCTAGGGTTGAAGAAAGGACCATGGTCCCCAAAAGAAGACAAGAAGCTTATAGCATATGTTACTCAACATGGCCATAGAAACTGGCATTCTTTGCCCTCCAGAGCAGGTAACATTACAGCATAGCTTGCTATATATAAAATATCCATCTTCAATTATGAGTAATATATTAACCAGTAATCTTGAGTTTATATATAGGTCTTAGAAGATGTGGAAAGAGTTGCAGACTGAGGTGGATTAACTACCTGAATCCTGATATAAAACGAGGAAACTTCAGCTCAGAGGAAGATCACACTATTATTCAGCTTCATGCACTTCTCGGGAACAAGTGAGATATTCTTTTGGATCTTTCTTCATATTCTCTATTTGGAAATCTTTGTATATTAACCTATTTACATGGAAACTGCACTTGTTTTATTTTGTTTCTATGAAGTTATAACAAGAGAGACATATAATTTTGAAGCACAGTGATTTACCAAAAACTCTAAAACTTTGAGAGAATACAAACGATAAAAGAAACCCTACTCCCAATGAGACAAGGTCACATAAGATATTGCATCACATGTTTTATTTTTTTTGAAAAAGCAAAATAATGGGTTATTAAGAAGAAAAAACAAGAGAATTCCAACCAAAATACAAAGTTATCAGTCAAAAAAGAAGAATAAGGTATTCCAACACAAATACAAAGTTACGAAGAACTTGATACAATGATACTAACACCGGACACAACACAGATAATAATGTGAGAAAGTTGAATAATTAAATGTAACAACATCTATTGGTTTGTGTCGCAGGTTAGCTTTACATAAGAAGTCTCTGTGCTATTTCTCCGATCTTAAGTATAAGATAAAATTGAGTCAAAAAAGGTTAATGAATTAGATCCAAATGCATCAACTTTCTTTGATATTTAGGATCAGAGATAGCACTTACAAGCAAATTAAAGTAGGGAAGGAAAATCAGAAACCAGATACTGACATTATATGTTCCATTTTTTTCTTTCTAATTTTATGTCATCTATAAAATCACATACAAGAAGTAAAGAATATTATTATTCACTATTCATATATTAGAACACTTGAATGACATGTTATGTTATTATTCACTATTCTTATATTAAGACTTGACTGTCCTTGTGAGCTCAGCTCAGTTGGTATGGACAATGCATAATATATGTAAGGTCTGGGGTTCAAACCAACCGCGGCACCACCAAAAAATATTAAGACTTGACTAAGATAAAATGAATAGTGATTTTTGTCTAGTACTTGTTGAGATTTAATTTTTGATAAAGAGTAATGTTCATGGATGTGAACAATATGCACTTCACAGATGGTCCACAATAGCAGCTCTCCTGCCAAGGAGAACAGATAATGAAATAAAGAATCATTGGAACAGTAACATCAAGAAAAGACTTATCAGAATGGGGATAGATCCCACCACTCACAAACCAAAATCTAACAACAACAACAACAACAACAAGGACAATGTCAATTCTGCTATCAAACAAGTTGCTCAATGGGAGAATGTTAGATTAGAAGCTGAAGGAAGATCATCAATGTTAGGAAAAACTCAAACTCAACCTTTACTATCTTCATCAAGTTCATCAAAGTTATCACTAACCAAACACAACAATGCAATGTATAACATGTGTGCTATCATGCTTGCAAATAATGATGACTCTTTTTCTTCAACATCCACATTGAGCTTTCCTAATGAGCTTCCTTGTCTTACCAATGAATTGAAGTTTGGAGAAGGCTTAGGATCATATGAGAGTGTTAGTAATAATAATATCATGGAAACTATTGCTCAAGATGATGTTTATGTGTCAAAATTGCAAGGTGATGATGATCTAATGGTGGCATTGGATGCATTTGGAGATTCCTTCAATGGTGACACTTTCATGGACTTCAATGGAAATGGAATGTACAATTTTGATGCTAGCTAG
Protein sequence

>MS.gene53067.t1

MSRALGLKKGPWSPKEDKKLIAYVTQHGHRNWHSLPSRAGLRRCGKSCRLRWINYLNPDIKRGNFSSEEDHTIIQLHALLGNKWSTIAALLPRRTDNEIKNHWNSNIKKRLIRMGIDPTTHKPKSNNNNNNNKDNVNSAIKQVAQWENVRLEAEGRSSMLGKTQTQPLLSSSSSSKLSLTKHNNAMYNMCAIMLANNDDSFSSTSTLSFPNELPCLTNELKFGEGLGSYESVSNNNIMETIAQDDVYVSKLQGDDDLMVALDAFGDSFNGDTFMDFNGNGMYNFDAS