Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53176.t1 | XP_003614031.1 | 85.9 | 525 | 49 | 6 | 1 | 511 | 1 | 514 | 4.20E-200 | 707.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53176.t1 | Q9M202 | 40.8 | 71 | 28 | 1 | 441 | 511 | 224 | 280 | 6.1e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53176.t1 | G7JWR4 | 85.9 | 525 | 49 | 6 | 1 | 511 | 1 | 514 | 3.0e-200 | 707.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene53176.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53176.t1 | MTR_5g043930 | 89.714 | 525 | 29 | 6 | 1 | 511 | 1 | 514 | 0.0 | 834 |
| MS.gene53176.t1 | MTR_4g082980 | 40.111 | 541 | 203 | 17 | 1 | 511 | 1 | 450 | 1.24e-68 | 227 |
| MS.gene53176.t1 | MTR_4g109340 | 33.455 | 550 | 252 | 25 | 5 | 511 | 12 | 490 | 1.98e-55 | 194 |
| MS.gene53176.t1 | MTR_3g023760 | 34.234 | 222 | 104 | 6 | 5 | 213 | 13 | 205 | 1.57e-19 | 91.7 |
| MS.gene53176.t1 | MTR_0160s0030 | 42.466 | 73 | 27 | 1 | 439 | 511 | 284 | 341 | 2.19e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53176.t1 | AT1G26610 | 43.019 | 530 | 195 | 23 | 5 | 511 | 10 | 455 | 2.49e-91 | 286 |
| MS.gene53176.t1 | AT1G26590 | 33.613 | 476 | 155 | 22 | 5 | 465 | 10 | 339 | 4.18e-36 | 138 |
| MS.gene53176.t1 | AT1G26590 | 33.613 | 476 | 155 | 22 | 5 | 465 | 10 | 339 | 4.18e-36 | 138 |
| MS.gene53176.t1 | AT1G26590 | 33.613 | 476 | 155 | 22 | 5 | 465 | 10 | 339 | 4.18e-36 | 138 |
| MS.gene53176.t1 | AT1G26590 | 33.543 | 477 | 156 | 22 | 5 | 466 | 28 | 358 | 1.12e-35 | 137 |
Find 83 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGAAAGAGATTGGATTT+AGG | 0.149234 | 5.4:-33170687 | MS.gene53176:CDS |
| TTGAAAATCTTGTTACAAAT+TGG | 0.152666 | 5.4:+33169529 | None:intergenic |
| CATCATTTCCTCCAATAAAA+TGG | 0.153454 | 5.4:+33169473 | None:intergenic |
| AGAGAAAGAGATTGGATTTA+GGG | 0.199212 | 5.4:-33170686 | MS.gene53176:CDS |
| GATGATGGTAACCTTATTTA+TGG | 0.208436 | 5.4:-33170648 | MS.gene53176:CDS |
| GTTTCTGATAATTCTGATTC+TGG | 0.223352 | 5.4:-33170012 | MS.gene53176:CDS |
| TTCCTATTGCTTTGTGCCTT+TGG | 0.236872 | 5.4:+33169634 | None:intergenic |
| GTCTAGAGATTCTACTTATA+AGG | 0.238762 | 5.4:-33170229 | MS.gene53176:CDS |
| GATTCTGGATACTTCACTTA+TGG | 0.263166 | 5.4:-33169997 | MS.gene53176:CDS |
| TTCTTCTTTCCTTTAGTACT+TGG | 0.270081 | 5.4:+33169586 | None:intergenic |
| GAATTGTTCTTCTTCGGTTT+CGG | 0.278582 | 5.4:-33170298 | MS.gene53176:CDS |
| AAGATGAAATCGGTCGAAAT+TGG | 0.290349 | 5.4:-33170039 | MS.gene53176:CDS |
| GCAGCAACAGCAGGAGGTGC+AGG | 0.291343 | 5.4:+33169403 | None:intergenic |
| TTCAAGTCAGGACAAGCTTT+AGG | 0.299867 | 5.4:-33169511 | MS.gene53176:CDS |
| GTCTTCGTCTTCGCTTCATT+GGG | 0.309421 | 5.4:-33170322 | MS.gene53176:CDS |
| TGAATTCAAGAAAGTAGTTT+TGG | 0.325143 | 5.4:-33169827 | MS.gene53176:CDS |
| TCAAGTCAGGACAAGCTTTA+GGG | 0.329356 | 5.4:-33169510 | MS.gene53176:CDS |
| GCAGCATGAGCAGCACCAGC+TGG | 0.341131 | 5.4:+33169430 | None:intergenic |
| TCTCTCTAAGACCATAAATA+AGG | 0.341554 | 5.4:+33170637 | None:intergenic |
| GCAGCAGCAGCAACAGCAGG+AGG | 0.346468 | 5.4:+33169397 | None:intergenic |
| AGTCTTCGTCTTCGCTTCAT+TGG | 0.357875 | 5.4:-33170323 | MS.gene53176:CDS |
| AATCTCTTGGTGGTCACATT+AGG | 0.382747 | 5.4:-33170809 | MS.gene53176:CDS |
| TGTCCGTGAAAAGCAGAAAT+TGG | 0.395743 | 5.4:-33170442 | MS.gene53176:CDS |
| CTGCTCCTGATGATGAATAA+AGG | 0.396449 | 5.4:-33169342 | None:intergenic |
| TGAAAAGCAGAAATTGGTTA+TGG | 0.401153 | 5.4:-33170436 | MS.gene53176:CDS |
| AAGTTTGCTGTTATGAATCA+TGG | 0.406974 | 5.4:-33170129 | MS.gene53176:CDS |
| TTGCTTTGTGCCTTTGGAGC+AGG | 0.407050 | 5.4:+33169640 | None:intergenic |
| CAAAACCTTTATTCATCATC+AGG | 0.407763 | 5.4:+33169337 | None:intergenic |
| CCTTGTGGAAAATCTCTTGG+TGG | 0.417387 | 5.4:-33170819 | MS.gene53176:CDS |
| GGGAAGAAAGAGAAAGAGAT+TGG | 0.418968 | 5.4:-33170694 | MS.gene53176:CDS |
| GATACTAAGTCTTCAAAAGT+TGG | 0.434764 | 5.4:-33169925 | MS.gene53176:CDS |
| TTCGGTTTCGGAGGTTGAGC+AGG | 0.435311 | 5.4:-33170286 | MS.gene53176:CDS |
| TTCTGTAAAGAATGTGGAAA+AGG | 0.436561 | 5.4:-33170552 | MS.gene53176:CDS |
| ATCATTTCCTCCAATAAAAT+GGG | 0.439536 | 5.4:+33169474 | None:intergenic |
| GATTTAGGGTCTAGTGGTAA+TGG | 0.442325 | 5.4:-33170672 | MS.gene53176:CDS |
| TTTCCTTGTGGAAAATCTCT+TGG | 0.449803 | 5.4:-33170822 | MS.gene53176:CDS |
| CTCCAAAGGCACAAAGCAAT+AGG | 0.451795 | 5.4:-33169636 | MS.gene53176:CDS |
| TTCGGAGGTTGAGCAGGAGC+AGG | 0.458621 | 5.4:-33170280 | MS.gene53176:CDS |
| TCTAGAGATTCTACTTATAA+GGG | 0.461296 | 5.4:-33170228 | MS.gene53176:CDS |
| TCAGTCTGATACCGAGGCTT+CGG | 0.472830 | 5.4:-33170409 | MS.gene53176:CDS |
| CTGAACAGTAGCAGCAGCAT+TGG | 0.476419 | 5.4:+33170584 | None:intergenic |
| AATAAGAAGCCAAGTACTAA+AGG | 0.480141 | 5.4:-33169595 | MS.gene53176:CDS |
| CCACACAGTGCTTTCAATGA+TGG | 0.493227 | 5.4:+33170525 | None:intergenic |
| CTTCGGTTCAGACTGATTCA+AGG | 0.498154 | 5.4:-33170392 | MS.gene53176:CDS |
| GCTATGTTTAAGTTTGATGA+GGG | 0.506285 | 5.4:-33170714 | MS.gene53176:CDS |
| GAGAAATTCTGTAAAGAATG+TGG | 0.506498 | 5.4:-33170558 | MS.gene53176:CDS |
| CTTTATTCATCATCAGGAGC+AGG | 0.509902 | 5.4:+33169343 | None:intergenic |
| TGTCACTCTGAGAAAGATAA+GGG | 0.513515 | 5.4:-33170492 | MS.gene53176:CDS |
| TTGTCACTCTGAGAAAGATA+AGG | 0.514322 | 5.4:-33170493 | MS.gene53176:CDS |
| ATGATTCATAACAGCAAACT+TGG | 0.515359 | 5.4:+33170131 | None:intergenic |
| TGCTGCTGCTACTGTTCAGA+TGG | 0.519726 | 5.4:-33170580 | MS.gene53176:CDS |
| CAAAGACGGGAAGATGAAAT+CGG | 0.522844 | 5.4:-33170049 | MS.gene53176:CDS |
| CAAAGCAATAGGAACATGAA+TGG | 0.522883 | 5.4:-33169625 | MS.gene53176:CDS |
| AGATTAAGATCAAATAAAGA+TGG | 0.528073 | 5.4:+33169367 | None:intergenic |
| CTTCGTCTTCGCTTCATTGG+GGG | 0.536060 | 5.4:-33170320 | MS.gene53176:CDS |
| TCTAGTGGTAATGGTGATGA+TGG | 0.536602 | 5.4:-33170663 | MS.gene53176:CDS |
| AATCGGATTGAAAGTGTGTC+TGG | 0.538516 | 5.4:-33170465 | MS.gene53176:CDS |
| GAATCAGATGATTCAAGTGA+TGG | 0.538994 | 5.4:-33169961 | MS.gene53176:CDS |
| TGCTATGTTTAAGTTTGATG+AGG | 0.542036 | 5.4:-33170715 | MS.gene53176:CDS |
| AATCATGGTAAGAACATTGT+TGG | 0.543414 | 5.4:-33170114 | MS.gene53176:CDS |
| AGAAGAAGTTGAACAAAGAC+GGG | 0.553022 | 5.4:-33170062 | MS.gene53176:CDS |
| TTGTTCTTCTTCGGTTTCGG+AGG | 0.558551 | 5.4:-33170295 | MS.gene53176:CDS |
| ATCAGTCTGAACCGAAGCCT+CGG | 0.559850 | 5.4:+33170398 | None:intergenic |
| GAGAAGAAGTTGAACAAAGA+CGG | 0.560154 | 5.4:-33170063 | MS.gene53176:CDS |
| AGGAGCAGGAAGATGTTGCT+AGG | 0.560537 | 5.4:-33170266 | MS.gene53176:CDS |
| AGACACACTTTCAATCCGAT+TGG | 0.563334 | 5.4:+33170467 | None:intergenic |
| TCTTCGTCTTCGCTTCATTG+GGG | 0.566211 | 5.4:-33170321 | MS.gene53176:CDS |
| ACTCTTGTGATTAGACCAGC+TGG | 0.571253 | 5.4:-33169445 | MS.gene53176:CDS |
| AGATTGGATTTAGGGTCTAG+TGG | 0.582545 | 5.4:-33170678 | MS.gene53176:CDS |
| ATGAAGTTCAAGAATCTTAG+CGG | 0.587922 | 5.4:-33170357 | MS.gene53176:CDS |
| TGATTCTTATCCTGCTCCAA+AGG | 0.589382 | 5.4:-33169650 | MS.gene53176:CDS |
| GAAAGCACTGTGTGGTCACA+TGG | 0.599338 | 5.4:-33170517 | MS.gene53176:CDS |
| AGAAAGATAAGGGAGCCAAT+CGG | 0.599365 | 5.4:-33170482 | MS.gene53176:CDS |
| CAAGTCAGGACAAGCTTTAG+GGG | 0.607651 | 5.4:-33169509 | MS.gene53176:CDS |
| TCAGAAGACTCTGTCACCAA+AGG | 0.619365 | 5.4:+33170198 | None:intergenic |
| GGATAGTCAGTCTGATACCG+AGG | 0.628900 | 5.4:-33170415 | MS.gene53176:CDS |
| AAGTCAGGACAAGCTTTAGG+GGG | 0.631959 | 5.4:-33169508 | MS.gene53176:CDS |
| GCAAACTTGGTATCAACAGA+AGG | 0.632363 | 5.4:+33170144 | None:intergenic |
| AGAATCCCAAGAAAACAACT+AGG | 0.636642 | 5.4:-33170617 | MS.gene53176:CDS |
| TCAAGCAAGATAATAAGCAG+AGG | 0.648910 | 5.4:-33169868 | MS.gene53176:CDS |
| CCATCATTGAAAGCACTGTG+TGG | 0.660357 | 5.4:-33170525 | MS.gene53176:CDS |
| TGTTTGAAAAGGTTTCCTTG+TGG | 0.689303 | 5.4:-33170834 | MS.gene53176:CDS |
| AAGTTCAAGAATCTTAGCGG+CGG | 0.705259 | 5.4:-33170354 | MS.gene53176:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATTAAGATCAAATAAAGA+TGG | + | chr5.4:33170839-33170858 | None:intergenic | 20.0% |
| !! | TTGAAAATCTTGTTACAAAT+TGG | + | chr5.4:33170677-33170696 | None:intergenic | 20.0% |
| !!! | TTTGTAAGTTTTGTTTGAAA+AGG | - | chr5.4:33169358-33169377 | MS.gene53176:CDS | 20.0% |
| ! | ATCATTTCCTCCAATAAAAT+GGG | + | chr5.4:33170732-33170751 | None:intergenic | 25.0% |
| ! | TCTAGAGATTCTACTTATAA+GGG | - | chr5.4:33169975-33169994 | MS.gene53176:CDS | 25.0% |
| !! | TGAATTCAAGAAAGTAGTTT+TGG | - | chr5.4:33170376-33170395 | MS.gene53176:CDS | 25.0% |
| !!! | TCATCTGATTCTACTTTTTT+AGG | + | chr5.4:33170233-33170252 | None:intergenic | 25.0% |
| !!! | TTTTCTAGTTTTGAGAATCA+TGG | - | chr5.4:33170305-33170324 | MS.gene53176:CDS | 25.0% |
| AAGAGAAAGAGATTGGATTT+AGG | - | chr5.4:33169516-33169535 | MS.gene53176:CDS | 30.0% | |
| AATAAGAAGCCAAGTACTAA+AGG | - | chr5.4:33170608-33170627 | MS.gene53176:CDS | 30.0% | |
| AATCATGGTAAGAACATTGT+TGG | - | chr5.4:33170089-33170108 | MS.gene53176:CDS | 30.0% | |
| AGAGAAAGAGATTGGATTTA+GGG | - | chr5.4:33169517-33169536 | MS.gene53176:CDS | 30.0% | |
| ATGAAGTTCAAGAATCTTAG+CGG | - | chr5.4:33169846-33169865 | MS.gene53176:CDS | 30.0% | |
| ATGATTCATAACAGCAAACT+TGG | + | chr5.4:33170075-33170094 | None:intergenic | 30.0% | |
| CATCATTTCCTCCAATAAAA+TGG | + | chr5.4:33170733-33170752 | None:intergenic | 30.0% | |
| GAGAAATTCTGTAAAGAATG+TGG | - | chr5.4:33169645-33169664 | MS.gene53176:CDS | 30.0% | |
| GATACTAAGTCTTCAAAAGT+TGG | - | chr5.4:33170278-33170297 | MS.gene53176:CDS | 30.0% | |
| GTCTAGAGATTCTACTTATA+AGG | - | chr5.4:33169974-33169993 | MS.gene53176:CDS | 30.0% | |
| GTTTCTGATAATTCTGATTC+TGG | - | chr5.4:33170191-33170210 | MS.gene53176:CDS | 30.0% | |
| TGAAAAGCAGAAATTGGTTA+TGG | - | chr5.4:33169767-33169786 | MS.gene53176:CDS | 30.0% | |
| TTCTGTAAAGAATGTGGAAA+AGG | - | chr5.4:33169651-33169670 | MS.gene53176:CDS | 30.0% | |
| TTCTTCTTTCCTTTAGTACT+TGG | + | chr5.4:33170620-33170639 | None:intergenic | 30.0% | |
| ! | GATGATGGTAACCTTATTTA+TGG | - | chr5.4:33169555-33169574 | MS.gene53176:CDS | 30.0% |
| ! | GCTATGTTTAAGTTTGATGA+GGG | - | chr5.4:33169489-33169508 | MS.gene53176:CDS | 30.0% |
| ! | TGCTATGTTTAAGTTTGATG+AGG | - | chr5.4:33169488-33169507 | MS.gene53176:CDS | 30.0% |
| !! | AAGTTTGCTGTTATGAATCA+TGG | - | chr5.4:33170074-33170093 | MS.gene53176:CDS | 30.0% |
| !! | ACAAACCTAGTTGTTTTCTT+GGG | + | chr5.4:33169594-33169613 | None:intergenic | 30.0% |
| !! | ATTGTTGGTGCTAAAAACAA+TGG | - | chr5.4:33170104-33170123 | MS.gene53176:CDS | 30.0% |
| !! | TAACCAATTTCTGCTTTTCA+CGG | + | chr5.4:33169767-33169786 | None:intergenic | 30.0% |
| !! | TCTCTCTAAGACCATAAATA+AGG | + | chr5.4:33169569-33169588 | None:intergenic | 30.0% |
| !!! | AAAAACAATGGTTTTGAGCT+TGG | - | chr5.4:33170116-33170135 | MS.gene53176:CDS | 30.0% |
| !!! | AAGTAGTTTTGGATGATTCA+AGG | - | chr5.4:33170387-33170406 | MS.gene53176:CDS | 30.0% |
| !!! | ATTCAAGTGATGGTTTTTTC+AGG | - | chr5.4:33170252-33170271 | MS.gene53176:CDS | 30.0% |
| !!! | TGTAACAAGATTTTCAAGTC+AGG | - | chr5.4:33170680-33170699 | MS.gene53176:CDS | 30.0% |
| AAGATGAAATCGGTCGAAAT+TGG | - | chr5.4:33170164-33170183 | MS.gene53176:CDS | 35.0% | |
| AGAAGAAGTTGAACAAAGAC+GGG | - | chr5.4:33170141-33170160 | MS.gene53176:CDS | 35.0% | |
| AGAATCCCAAGAAAACAACT+AGG | - | chr5.4:33169586-33169605 | MS.gene53176:CDS | 35.0% | |
| CAAAGCAATAGGAACATGAA+TGG | - | chr5.4:33170578-33170597 | MS.gene53176:CDS | 35.0% | |
| GAATCAGATGATTCAAGTGA+TGG | - | chr5.4:33170242-33170261 | MS.gene53176:CDS | 35.0% | |
| GAATTGTTCTTCTTCGGTTT+CGG | - | chr5.4:33169905-33169924 | MS.gene53176:CDS | 35.0% | |
| GAGAAGAAGTTGAACAAAGA+CGG | - | chr5.4:33170140-33170159 | MS.gene53176:CDS | 35.0% | |
| GATTCTGGATACTTCACTTA+TGG | - | chr5.4:33170206-33170225 | MS.gene53176:CDS | 35.0% | |
| TCAAGCAAGATAATAAGCAG+AGG | - | chr5.4:33170335-33170354 | MS.gene53176:CDS | 35.0% | |
| TGTTTGAAAAGGTTTCCTTG+TGG | - | chr5.4:33169369-33169388 | MS.gene53176:CDS | 35.0% | |
| TTTCCTTGTGGAAAATCTCT+TGG | - | chr5.4:33169381-33169400 | MS.gene53176:CDS | 35.0% | |
| ! | AAAAGGTCCCATTTTATTGG+AGG | - | chr5.4:33170722-33170741 | MS.gene53176:CDS | 35.0% |
| ! | CACAAAAGGTCCCATTTTAT+TGG | - | chr5.4:33170719-33170738 | MS.gene53176:CDS | 35.0% |
| ! | TGTCACTCTGAGAAAGATAA+GGG | - | chr5.4:33169711-33169730 | MS.gene53176:CDS | 35.0% |
| ! | TTGTCACTCTGAGAAAGATA+AGG | - | chr5.4:33169710-33169729 | MS.gene53176:CDS | 35.0% |
| ! | TTTTGGATGATTCAAGGAAG+AGG | - | chr5.4:33170393-33170412 | MS.gene53176:CDS | 35.0% |
| !! | CACAAACCTAGTTGTTTTCT+TGG | + | chr5.4:33169595-33169614 | None:intergenic | 35.0% |
| !! | TTATAAGGGTCGTTTTCCTT+TGG | - | chr5.4:33169989-33170008 | MS.gene53176:CDS | 35.0% |
| AAGTTCAAGAATCTTAGCGG+CGG | - | chr5.4:33169849-33169868 | MS.gene53176:CDS | 40.0% | |
| AGAAAGATAAGGGAGCCAAT+CGG | - | chr5.4:33169721-33169740 | MS.gene53176:CDS | 40.0% | |
| AGACACACTTTCAATCCGAT+TGG | + | chr5.4:33169739-33169758 | None:intergenic | 40.0% | |
| CAAAGACGGGAAGATGAAAT+CGG | - | chr5.4:33170154-33170173 | MS.gene53176:CDS | 40.0% | |
| GCAAACTTGGTATCAACAGA+AGG | + | chr5.4:33170062-33170081 | None:intergenic | 40.0% | |
| GGGAAGAAAGAGAAAGAGAT+TGG | - | chr5.4:33169509-33169528 | MS.gene53176:CDS | 40.0% | |
| TCAAGTCAGGACAAGCTTTA+GGG | - | chr5.4:33170693-33170712 | MS.gene53176:CDS | 40.0% | |
| TGATTCTTATCCTGCTCCAA+AGG | - | chr5.4:33170553-33170572 | MS.gene53176:CDS | 40.0% | |
| TGTCCGTGAAAAGCAGAAAT+TGG | - | chr5.4:33169761-33169780 | MS.gene53176:CDS | 40.0% | |
| TTCAAGTCAGGACAAGCTTT+AGG | - | chr5.4:33170692-33170711 | MS.gene53176:CDS | 40.0% | |
| TTCCTATTGCTTTGTGCCTT+TGG | + | chr5.4:33170572-33170591 | None:intergenic | 40.0% | |
| TTGGGGGAATTGTTCTTCTT+CGG | - | chr5.4:33169899-33169918 | MS.gene53176:CDS | 40.0% | |
| ! | AATCGGATTGAAAGTGTGTC+TGG | - | chr5.4:33169738-33169757 | MS.gene53176:CDS | 40.0% |
| ! | AATCTCTTGGTGGTCACATT+AGG | - | chr5.4:33169394-33169413 | MS.gene53176:CDS | 40.0% |
| ! | AGATTGGATTTAGGGTCTAG+TGG | - | chr5.4:33169525-33169544 | MS.gene53176:CDS | 40.0% |
| ! | GATTTAGGGTCTAGTGGTAA+TGG | - | chr5.4:33169531-33169550 | MS.gene53176:CDS | 40.0% |
| !! | TCTAGTGGTAATGGTGATGA+TGG | - | chr5.4:33169540-33169559 | MS.gene53176:CDS | 40.0% |
| ACTCTTGTGATTAGACCAGC+TGG | - | chr5.4:33170758-33170777 | MS.gene53176:CDS | 45.0% | |
| AGTCTTCGTCTTCGCTTCAT+TGG | - | chr5.4:33169880-33169899 | MS.gene53176:CDS | 45.0% | |
| CCACACAGTGCTTTCAATGA+TGG | + | chr5.4:33169681-33169700 | None:intergenic | 45.0% | |
| CCTTGTGGAAAATCTCTTGG+TGG | - | chr5.4:33169384-33169403 | MS.gene53176:CDS | 45.0% | |
| GTCTTCGTCTTCGCTTCATT+GGG | - | chr5.4:33169881-33169900 | MS.gene53176:CDS | 45.0% | |
| TCAGAAGACTCTGTCACCAA+AGG | + | chr5.4:33170008-33170027 | None:intergenic | 45.0% | |
| TCTTCGTCTTCGCTTCATTG+GGG | - | chr5.4:33169882-33169901 | MS.gene53176:CDS | 45.0% | |
| TTGTTCTTCTTCGGTTTCGG+AGG | - | chr5.4:33169908-33169927 | MS.gene53176:CDS | 45.0% | |
| ! | CAAGTCAGGACAAGCTTTAG+GGG | - | chr5.4:33170694-33170713 | MS.gene53176:CDS | 45.0% |
| ! | CCACCAAGAGATTTTCCACA+AGG | + | chr5.4:33169387-33169406 | None:intergenic | 45.0% |
| ! | CTCCAAAGGCACAAAGCAAT+AGG | - | chr5.4:33170567-33170586 | MS.gene53176:CDS | 45.0% |
| ! | CTTCGGTTCAGACTGATTCA+AGG | - | chr5.4:33169811-33169830 | MS.gene53176:CDS | 45.0% |
| !! | AAGCTTTAGGGGGTCACAAA+AGG | - | chr5.4:33170705-33170724 | MS.gene53176:CDS | 45.0% |
| !! | AAGTCAGGACAAGCTTTAGG+GGG | - | chr5.4:33170695-33170714 | MS.gene53176:CDS | 45.0% |
| !! | CCATCATTGAAAGCACTGTG+TGG | - | chr5.4:33169678-33169697 | MS.gene53176:CDS | 45.0% |
| AGGAGCAGGAAGATGTTGCT+AGG | - | chr5.4:33169937-33169956 | MS.gene53176:CDS | 50.0% | |
| ATCAGTCTGAACCGAAGCCT+CGG | + | chr5.4:33169808-33169827 | None:intergenic | 50.0% | |
| CTGAACAGTAGCAGCAGCAT+TGG | + | chr5.4:33169622-33169641 | None:intergenic | 50.0% | |
| CTTCGTCTTCGCTTCATTGG+GGG | - | chr5.4:33169883-33169902 | MS.gene53176:CDS | 50.0% | |
| GGATAGTCAGTCTGATACCG+AGG | - | chr5.4:33169788-33169807 | MS.gene53176:CDS | 50.0% | |
| TCAGTCTGATACCGAGGCTT+CGG | - | chr5.4:33169794-33169813 | MS.gene53176:CDS | 50.0% | |
| TGCTGCTGCTACTGTTCAGA+TGG | - | chr5.4:33169623-33169642 | MS.gene53176:CDS | 50.0% | |
| !! | GAAAGCACTGTGTGGTCACA+TGG | - | chr5.4:33169686-33169705 | MS.gene53176:CDS | 50.0% |
| !! | TTGCTTTGTGCCTTTGGAGC+AGG | + | chr5.4:33170566-33170585 | None:intergenic | 50.0% |
| TTCGGTTTCGGAGGTTGAGC+AGG | - | chr5.4:33169917-33169936 | MS.gene53176:CDS | 55.0% | |
| TTCGGAGGTTGAGCAGGAGC+AGG | - | chr5.4:33169923-33169942 | MS.gene53176:CDS | 60.0% | |
| GCAGCAGCAGCAACAGCAGG+AGG | + | chr5.4:33170809-33170828 | None:intergenic | 65.0% | |
| GCAGCAGCAGCAGCAACAGC+AGG | + | chr5.4:33170812-33170831 | None:intergenic | 65.0% | |
| GCAGCATGAGCAGCACCAGC+TGG | + | chr5.4:33170776-33170795 | None:intergenic | 65.0% | |
| ! | GCAGCAACAGCAGGAGGTGC+AGG | + | chr5.4:33170803-33170822 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 33169345 | 33170880 | 33169345 | ID=MS.gene53176 |
| chr5.4 | mRNA | 33169345 | 33170880 | 33169345 | ID=MS.gene53176.t1;Parent=MS.gene53176 |
| chr5.4 | exon | 33169345 | 33170880 | 33169345 | ID=MS.gene53176.t1.exon1;Parent=MS.gene53176.t1 |
| chr5.4 | CDS | 33169345 | 33170880 | 33169345 | ID=cds.MS.gene53176.t1;Parent=MS.gene53176.t1 |
| Gene Sequence |
| Protein sequence |
