Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53231.t1 | XP_024635892.1 | 82.4 | 239 | 32 | 1 | 15 | 253 | 188 | 416 | 1.00E-109 | 406.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53231.t1 | Q8L3W1 | 27.3 | 326 | 144 | 8 | 15 | 253 | 21 | 340 | 8.8e-22 | 105.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53231.t1 | G7IYE9 | 82.4 | 239 | 32 | 1 | 15 | 253 | 36 | 264 | 7.2e-110 | 406.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene53231.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53231.t1 | MTR_3g005480 | 85.356 | 239 | 25 | 1 | 15 | 253 | 36 | 264 | 7.10e-153 | 426 |
| MS.gene53231.t1 | MTR_3g005490 | 78.423 | 241 | 41 | 2 | 15 | 255 | 36 | 265 | 5.26e-137 | 386 |
| MS.gene53231.t1 | MTR_5g070440 | 69.106 | 246 | 72 | 2 | 12 | 255 | 31 | 274 | 2.07e-121 | 347 |
| MS.gene53231.t1 | MTR_3g005420 | 65.145 | 241 | 82 | 1 | 15 | 255 | 304 | 542 | 1.63e-107 | 321 |
| MS.gene53231.t1 | MTR_3g005420 | 54.393 | 239 | 81 | 5 | 12 | 246 | 50 | 264 | 3.67e-71 | 227 |
| MS.gene53231.t1 | MTR_3g005460 | 63.968 | 247 | 83 | 2 | 15 | 255 | 277 | 523 | 2.28e-105 | 315 |
| MS.gene53231.t1 | MTR_3g005460 | 54.701 | 234 | 79 | 4 | 12 | 243 | 35 | 243 | 1.60e-76 | 241 |
| MS.gene53231.t1 | MTR_3g005420 | 53.942 | 241 | 74 | 2 | 15 | 255 | 285 | 488 | 1.67e-79 | 248 |
| MS.gene53231.t1 | MTR_3g005420 | 54.393 | 239 | 81 | 5 | 12 | 246 | 31 | 245 | 6.33e-72 | 228 |
| MS.gene53231.t1 | MTR_3g005440 | 62.176 | 193 | 66 | 1 | 15 | 207 | 257 | 442 | 6.11e-75 | 234 |
| MS.gene53231.t1 | MTR_3g005440 | 49.145 | 234 | 66 | 3 | 15 | 246 | 35 | 217 | 6.99e-61 | 198 |
| MS.gene53231.t1 | MTR_3g005495 | 51.220 | 246 | 87 | 4 | 8 | 252 | 21 | 234 | 1.09e-74 | 234 |
| MS.gene53231.t1 | MTR_3g005495 | 53.191 | 235 | 89 | 6 | 15 | 247 | 258 | 473 | 2.94e-71 | 226 |
| MS.gene53231.t1 | MTR_1g015350 | 40.437 | 183 | 35 | 4 | 43 | 225 | 58 | 166 | 9.94e-30 | 110 |
| MS.gene53231.t1 | MTR_7g050710 | 30.526 | 285 | 149 | 10 | 15 | 252 | 28 | 310 | 1.01e-27 | 108 |
| MS.gene53231.t1 | MTR_3g098790 | 29.749 | 279 | 149 | 10 | 16 | 252 | 29 | 302 | 1.62e-26 | 105 |
| MS.gene53231.t1 | MTR_3g061310 | 29.278 | 263 | 155 | 7 | 15 | 248 | 25 | 285 | 9.81e-26 | 102 |
| MS.gene53231.t1 | MTR_0152s0100 | 42.982 | 114 | 62 | 1 | 140 | 253 | 2 | 112 | 7.45e-25 | 95.5 |
| MS.gene53231.t1 | MTR_0152s0100 | 42.982 | 114 | 62 | 1 | 140 | 253 | 2 | 112 | 7.45e-25 | 95.5 |
| MS.gene53231.t1 | MTR_3g061320 | 30.627 | 271 | 135 | 10 | 15 | 248 | 25 | 279 | 8.34e-25 | 100 |
| MS.gene53231.t1 | MTR_3g061370 | 28.102 | 274 | 155 | 6 | 9 | 248 | 16 | 281 | 1.41e-24 | 99.4 |
| MS.gene53231.t1 | MTR_1g034240 | 48.810 | 84 | 43 | 0 | 15 | 98 | 22 | 105 | 8.50e-24 | 99.4 |
| MS.gene53231.t1 | MTR_1g034240 | 36.364 | 132 | 71 | 4 | 126 | 250 | 268 | 393 | 1.99e-16 | 78.6 |
| MS.gene53231.t1 | MTR_3g061340 | 31.102 | 254 | 145 | 9 | 15 | 245 | 25 | 271 | 1.68e-23 | 96.3 |
| MS.gene53231.t1 | MTR_7g050560 | 26.007 | 273 | 158 | 5 | 16 | 252 | 29 | 293 | 2.08e-23 | 97.1 |
| MS.gene53231.t1 | MTR_3g061350 | 28.625 | 269 | 148 | 8 | 15 | 248 | 25 | 284 | 3.27e-23 | 95.9 |
| MS.gene53231.t1 | MTR_7g050590 | 24.828 | 290 | 157 | 6 | 16 | 252 | 2 | 283 | 4.47e-22 | 92.8 |
| MS.gene53231.t1 | MTR_7g050580 | 27.612 | 268 | 160 | 8 | 16 | 252 | 29 | 293 | 2.17e-21 | 91.3 |
| MS.gene53231.t1 | MTR_8g103940 | 25.685 | 292 | 152 | 8 | 13 | 250 | 52 | 332 | 3.60e-21 | 92.4 |
| MS.gene53231.t1 | MTR_1g108780 | 26.207 | 290 | 152 | 8 | 14 | 250 | 11 | 291 | 7.46e-21 | 91.3 |
| MS.gene53231.t1 | MTR_5g044670 | 24.460 | 278 | 166 | 6 | 16 | 252 | 32 | 306 | 1.15e-20 | 89.7 |
| MS.gene53231.t1 | MTR_4g068320 | 42.391 | 92 | 53 | 0 | 15 | 106 | 21 | 112 | 2.78e-20 | 89.7 |
| MS.gene53231.t1 | MTR_4g068320 | 30.729 | 192 | 101 | 6 | 83 | 252 | 210 | 391 | 4.14e-17 | 80.5 |
| MS.gene53231.t1 | MTR_1g035460 | 26.014 | 296 | 149 | 9 | 16 | 250 | 2 | 288 | 3.22e-19 | 86.3 |
| MS.gene53231.t1 | MTR_1g034210 | 49.333 | 75 | 38 | 0 | 15 | 89 | 22 | 96 | 2.63e-18 | 83.2 |
| MS.gene53231.t1 | MTR_1g034210 | 49.333 | 75 | 38 | 0 | 15 | 89 | 22 | 96 | 4.84e-18 | 82.8 |
| MS.gene53231.t1 | MTR_1g034210 | 33.871 | 124 | 69 | 4 | 134 | 250 | 242 | 359 | 2.44e-12 | 66.2 |
| MS.gene53231.t1 | MTR_3g061330 | 28.249 | 177 | 98 | 3 | 9 | 158 | 19 | 193 | 9.45e-18 | 80.5 |
| MS.gene53231.t1 | MTR_3g061290 | 40.476 | 84 | 50 | 0 | 15 | 98 | 25 | 108 | 4.73e-16 | 74.7 |
| MS.gene53231.t1 | MTR_7g050720 | 36.082 | 97 | 58 | 2 | 7 | 99 | 13 | 109 | 1.58e-15 | 75.1 |
| MS.gene53231.t1 | MTR_7g050640 | 34.118 | 85 | 56 | 0 | 16 | 100 | 29 | 113 | 1.82e-12 | 62.8 |
| MS.gene53231.t1 | MTR_6g061070 | 22.603 | 292 | 163 | 8 | 16 | 248 | 34 | 321 | 2.70e-12 | 66.2 |
| MS.gene53231.t1 | MTR_3g061220 | 36.905 | 84 | 40 | 1 | 15 | 98 | 25 | 95 | 8.66e-12 | 61.2 |
| MS.gene53231.t1 | MTR_4g119990 | 25.455 | 275 | 144 | 12 | 15 | 235 | 30 | 297 | 9.05e-12 | 64.7 |
| MS.gene53231.t1 | MTR_6g043890 | 35.227 | 88 | 56 | 1 | 15 | 101 | 30 | 117 | 9.17e-12 | 64.3 |
| MS.gene53231.t1 | MTR_1g021290 | 37.931 | 87 | 53 | 1 | 8 | 93 | 34 | 120 | 9.81e-12 | 64.3 |
| MS.gene53231.t1 | MTR_1g035510 | 32.653 | 98 | 63 | 2 | 16 | 113 | 2 | 96 | 1.53e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53231.t1 | AT3G18990 | 41.905 | 105 | 57 | 1 | 15 | 119 | 21 | 121 | 4.02e-21 | 91.3 |
| MS.gene53231.t1 | AT3G18990 | 36.296 | 135 | 74 | 4 | 126 | 254 | 213 | 341 | 5.12e-16 | 76.6 |
| MS.gene53231.t1 | AT3G18990 | 41.905 | 105 | 57 | 1 | 15 | 119 | 21 | 121 | 8.37e-21 | 90.5 |
| MS.gene53231.t1 | AT3G18990 | 36.029 | 136 | 75 | 4 | 126 | 255 | 213 | 342 | 1.07e-15 | 76.3 |
| MS.gene53231.t1 | AT1G49475 | 43.617 | 94 | 52 | 1 | 15 | 108 | 49 | 141 | 4.46e-19 | 82.8 |
| MS.gene53231.t1 | AT3G18960 | 39.535 | 86 | 52 | 0 | 15 | 100 | 45 | 130 | 5.98e-17 | 77.0 |
| MS.gene53231.t1 | AT3G18960 | 39.080 | 87 | 53 | 0 | 14 | 100 | 7 | 93 | 6.89e-17 | 76.3 |
| MS.gene53231.t1 | AT3G18960 | 38.384 | 99 | 60 | 1 | 2 | 100 | 33 | 130 | 7.97e-17 | 77.0 |
| MS.gene53231.t1 | AT4G01580 | 39.535 | 86 | 52 | 0 | 15 | 100 | 45 | 130 | 8.85e-17 | 76.6 |
| MS.gene53231.t1 | AT1G49480 | 36.296 | 135 | 74 | 4 | 126 | 254 | 98 | 226 | 1.96e-16 | 76.3 |
| MS.gene53231.t1 | AT1G49480 | 36.296 | 135 | 74 | 4 | 126 | 254 | 98 | 226 | 1.96e-16 | 76.3 |
| MS.gene53231.t1 | AT1G49480 | 36.296 | 135 | 74 | 4 | 126 | 254 | 98 | 226 | 1.96e-16 | 76.3 |
Find 39 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATTTCCCATTAGAATTT+TGG | 0.142530 | 3.3:+849141 | None:intergenic |
| AATGCTCTCCCTCAGAATTT+TGG | 0.165314 | 3.3:+848981 | None:intergenic |
| AAGTGAGAGTCATGAGAAAA+AGG | 0.253305 | 3.3:-849245 | MS.gene53231:CDS |
| GATGAGTTTATAACAAGATT+TGG | 0.275708 | 3.3:-849565 | MS.gene53231:CDS |
| TTTGCAGAATACTATTCTAT+AGG | 0.313465 | 3.3:-849433 | MS.gene53231:CDS |
| CATTGCAGATGATGATGATT+TGG | 0.324669 | 3.3:+848931 | None:intergenic |
| TTGCAGAATACTATTCTATA+GGG | 0.341018 | 3.3:-849432 | MS.gene53231:CDS |
| TTCCTGTGTTTCAAATATGA+AGG | 0.394296 | 3.3:-849400 | MS.gene53231:CDS |
| CTGTTCCTGATGGTTGTGAT+TGG | 0.401170 | 3.3:-849513 | MS.gene53231:CDS |
| AATCTTGTTATAAACTCATC+TGG | 0.413404 | 3.3:+849568 | None:intergenic |
| TTCAAAACTCAAAGTACAAA+TGG | 0.427538 | 3.3:-849319 | MS.gene53231:CDS |
| TTTGTGTGACTTTCATACTA+AGG | 0.436300 | 3.3:-850730 | MS.gene53231:intron |
| GGGATTTACTATATTTCAAA+GGG | 0.437078 | 3.3:-848897 | MS.gene53231:CDS |
| AAATTCTGAGGGAGAGCATT+GGG | 0.443772 | 3.3:-848978 | MS.gene53231:CDS |
| TGATGGTTGTGATTGGGAAA+TGG | 0.460791 | 3.3:-849506 | MS.gene53231:CDS |
| ACTCTCACTTGTTTCAACCT+TGG | 0.466400 | 3.3:+849258 | None:intergenic |
| CATCTGCAATGATAATATCA+AGG | 0.473557 | 3.3:-848919 | MS.gene53231:CDS |
| TGTTCCTGATGGTTGTGATT+GGG | 0.473692 | 3.3:-849512 | MS.gene53231:CDS |
| GGGGATTTACTATATTTCAA+AGG | 0.484674 | 3.3:-848898 | MS.gene53231:CDS |
| AGTGTCACAGTCGTAGAAAA+AGG | 0.493455 | 3.3:-849282 | MS.gene53231:CDS |
| AATTCTAATGGGAAATTATG+TGG | 0.499901 | 3.3:-849137 | MS.gene53231:intron |
| CCCCTTCATATTTGAAACAC+AGG | 0.508323 | 3.3:+849398 | None:intergenic |
| GAATACTATTCTATAGGGTA+TGG | 0.523564 | 3.3:-849427 | MS.gene53231:CDS |
| AAAATTCTGAGGGAGAGCAT+TGG | 0.523796 | 3.3:-848979 | MS.gene53231:CDS |
| TCCTGTGTTTCAAATATGAA+GGG | 0.529278 | 3.3:-849399 | MS.gene53231:CDS |
| ATTTCCCAATCACAACCATC+AGG | 0.529466 | 3.3:+849508 | None:intergenic |
| AGGGGCAACAATCTGTCTCA+TGG | 0.538258 | 3.3:-848878 | MS.gene53231:CDS |
| AATGTGCAGTATGTTAATGC+TGG | 0.551027 | 3.3:-849046 | MS.gene53231:intron |
| ATCTGCAATGATAATATCAA+GGG | 0.551519 | 3.3:-848918 | MS.gene53231:CDS |
| GCTACACTTACTGTTCCTGA+TGG | 0.561658 | 3.3:-849523 | MS.gene53231:CDS |
| CCTGTGTTTCAAATATGAAG+GGG | 0.591078 | 3.3:-849398 | MS.gene53231:CDS |
| TGAGCTGATCAATAAGAAGC+CGG | 0.592920 | 3.3:-848840 | MS.gene53231:CDS |
| TGTAAAGCTCCAAAATTCTG+AGG | 0.595481 | 3.3:-848990 | MS.gene53231:CDS |
| ACATGCTTCTGAAAGAGCAA+AGG | 0.603971 | 3.3:-849206 | MS.gene53231:CDS |
| GTAAAGCTCCAAAATTCTGA+GGG | 0.614548 | 3.3:-848989 | MS.gene53231:CDS |
| TTCATATTTGAAACACAGGA+AGG | 0.623348 | 3.3:+849402 | None:intergenic |
| GAAATGGAACTGAAGAAATG+CGG | 0.682734 | 3.3:-849490 | MS.gene53231:CDS |
| TCTGCAATGATAATATCAAG+GGG | 0.693916 | 3.3:-848917 | MS.gene53231:CDS |
| GGATTTACTATATTTCAAAG+GGG | 0.704196 | 3.3:-848896 | MS.gene53231:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CGAAAAATATTTAATCTTTT+TGG | - | chr3.3:849434-849453 | MS.gene53231:CDS | 15.0% |
| !!! | TTTATAGTTTAGTTTATGTT+TGG | - | chr3.3:848859-848878 | MS.gene53231:CDS | 15.0% |
| !! | AATCACATTTAATTCAACTA+AGG | + | chr3.3:849172-849191 | None:intergenic | 20.0% |
| !! | AATTTAGTCCTATAGTATAA+CGG | - | chr3.3:849926-849945 | MS.gene53231:intron | 20.0% |
| !! | ATCACATTTAATTCAACTAA+GGG | + | chr3.3:849171-849190 | None:intergenic | 20.0% |
| !! | TACTTAAAATCTCAACTTTA+AGG | - | chr3.3:849303-849322 | MS.gene53231:CDS | 20.0% |
| !! | TAGTACATACTTAGTTAAAT+TGG | - | chr3.3:849195-849214 | MS.gene53231:CDS | 20.0% |
| !! | TTCAATAAACAATCATAAAG+AGG | + | chr3.3:849644-849663 | None:intergenic | 20.0% |
| !!! | AGAATTTTGGAACAAAAATA+AGG | + | chr3.3:850392-850411 | None:intergenic | 20.0% |
| !!! | ATAATTTCCCATTAGAATTT+TGG | + | chr3.3:850405-850424 | None:intergenic | 20.0% |
| !!! | CATTATGAGATTTTCATAAT+CGG | + | chr3.3:849889-849908 | None:intergenic | 20.0% |
| !!! | GAATTTTGGAACAAAAATAA+GGG | + | chr3.3:850391-850410 | None:intergenic | 20.0% |
| !!! | GTTTTTTGGATTAAATTCTT+TGG | + | chr3.3:850369-850388 | None:intergenic | 20.0% |
| !!! | TTTTGTTCCAAAATTCTAAT+GGG | - | chr3.3:850395-850414 | MS.gene53231:intron | 20.0% |
| !!! | TTTTTGTTCCAAAATTCTAA+TGG | - | chr3.3:850394-850413 | MS.gene53231:intron | 20.0% |
| ! | AAACTGTGATATTGAAGTTA+CGG | - | chr3.3:849489-849508 | MS.gene53231:CDS | 25.0% |
| ! | AATTCTAATGGGAAATTATG+TGG | - | chr3.3:850406-850425 | MS.gene53231:intron | 25.0% |
| ! | AATTGAACAAAAGTGAAACT+AGG | - | chr3.3:849848-849867 | MS.gene53231:intron | 25.0% |
| ! | ATCTGCAATGATAATATCAA+GGG | - | chr3.3:850625-850644 | MS.gene53231:intron | 25.0% |
| ! | GATGAGTTTATAACAAGATT+TGG | - | chr3.3:849978-849997 | MS.gene53231:intron | 25.0% |
| ! | GGATTTACTATATTTCAAAG+GGG | - | chr3.3:850647-850666 | MS.gene53231:intron | 25.0% |
| ! | GGGATTTACTATATTTCAAA+GGG | - | chr3.3:850646-850665 | MS.gene53231:intron | 25.0% |
| ! | TCAACTTACTAGAAAAAAGA+AGG | + | chr3.3:849756-849775 | None:intergenic | 25.0% |
| ! | TGAATTCACTCTTAACTTAA+GGG | + | chr3.3:849245-849264 | None:intergenic | 25.0% |
| ! | TTCAAAACTCAAAGTACAAA+TGG | - | chr3.3:850224-850243 | MS.gene53231:intron | 25.0% |
| ! | TTGAATTCACTCTTAACTTA+AGG | + | chr3.3:849246-849265 | None:intergenic | 25.0% |
| ! | TTGCAGAATACTATTCTATA+GGG | - | chr3.3:850111-850130 | MS.gene53231:intron | 25.0% |
| ! | TTTGCAGAATACTATTCTAT+AGG | - | chr3.3:850110-850129 | MS.gene53231:intron | 25.0% |
| !! | AATCTTGTTATAAACTCATC+TGG | + | chr3.3:849978-849997 | None:intergenic | 25.0% |
| !! | ACTATAGGACTAAATTTTAG+AGG | + | chr3.3:849922-849941 | None:intergenic | 25.0% |
| !!! | GAACAAAAATAAGGGTTTTT+TGG | + | chr3.3:850383-850402 | None:intergenic | 25.0% |
| !!! | TTAGTTTTTATTTCCATGTC+AGG | - | chr3.3:848973-848992 | MS.gene53231:CDS | 25.0% |
| !!! | TTTGTACTTTGAGTTTTGAA+TGG | + | chr3.3:850224-850243 | None:intergenic | 25.0% |
| !!! | TTTTTTTGAATCACTCAAGA+AGG | + | chr3.3:849390-849409 | None:intergenic | 25.0% |
| AAACATGTCAAAATCAAGAG+GGG | + | chr3.3:849058-849077 | None:intergenic | 30.0% | |
| AGGATAAACCTTAAACAGAA+CGG | + | chr3.3:849736-849755 | None:intergenic | 30.0% | |
| CAAACATGTCAAAATCAAGA+GGG | + | chr3.3:849059-849078 | None:intergenic | 30.0% | |
| CATCTGCAATGATAATATCA+AGG | - | chr3.3:850624-850643 | MS.gene53231:intron | 30.0% | |
| CTGTTAATCCGTTATACTAT+AGG | + | chr3.3:849937-849956 | None:intergenic | 30.0% | |
| GAATACTATTCTATAGGGTA+TGG | - | chr3.3:850116-850135 | MS.gene53231:intron | 30.0% | |
| GGGGATTTACTATATTTCAA+AGG | - | chr3.3:850645-850664 | MS.gene53231:intron | 30.0% | |
| TCCTGTGTTTCAAATATGAA+GGG | - | chr3.3:850144-850163 | MS.gene53231:intron | 30.0% | |
| TCTGCAATGATAATATCAAG+GGG | - | chr3.3:850626-850645 | MS.gene53231:intron | 30.0% | |
| TTCCTGTGTTTCAAATATGA+AGG | - | chr3.3:850143-850162 | MS.gene53231:intron | 30.0% | |
| TTTGTGTGACTTTCATACTA+AGG | - | chr3.3:848813-848832 | MS.gene53231:CDS | 30.0% | |
| ! | TAAGTTGACTTATCTTCGTT+TGG | - | chr3.3:849768-849787 | MS.gene53231:intron | 30.0% |
| ! | TTCATATTTGAAACACAGGA+AGG | + | chr3.3:850144-850163 | None:intergenic | 30.0% |
| !! | ACGTTTACTTTTGCAACAAA+TGG | - | chr3.3:850081-850100 | MS.gene53231:intron | 30.0% |
| !! | ATAGGACTAAATTTTAGAGG+AGG | + | chr3.3:849919-849938 | None:intergenic | 30.0% |
| !! | GTTTATGTTTGGTTCAGTTT+TGG | - | chr3.3:848870-848889 | MS.gene53231:CDS | 30.0% |
| !! | TAGGACTAAATTTTAGAGGA+GGG | + | chr3.3:849918-849937 | None:intergenic | 30.0% |
| AAGTGAGAGTCATGAGAAAA+AGG | - | chr3.3:850298-850317 | MS.gene53231:intron | 35.0% | |
| AATGTGCAGTATGTTAATGC+TGG | - | chr3.3:850497-850516 | MS.gene53231:intron | 35.0% | |
| AGTGAGAGTCATGAGAAAAA+GGG | - | chr3.3:850299-850318 | MS.gene53231:intron | 35.0% | |
| ATGATGATCCGTTCTGTTTA+AGG | - | chr3.3:849725-849744 | MS.gene53231:intron | 35.0% | |
| CCTGTGTTTCAAATATGAAG+GGG | - | chr3.3:850145-850164 | MS.gene53231:intron | 35.0% | |
| GAAATGGAACTGAAGAAATG+CGG | - | chr3.3:850053-850072 | MS.gene53231:intron | 35.0% | |
| GCAAACATGTCAAAATCAAG+AGG | + | chr3.3:849060-849079 | None:intergenic | 35.0% | |
| GTAAAGCTCCAAAATTCTGA+GGG | - | chr3.3:850554-850573 | MS.gene53231:intron | 35.0% | |
| TAATGGGAAATTATGTGGTG+AGG | - | chr3.3:850411-850430 | MS.gene53231:intron | 35.0% | |
| TGTAAAGCTCCAAAATTCTG+AGG | - | chr3.3:850553-850572 | MS.gene53231:intron | 35.0% | |
| ! | ATTGTGACTTTTAGCACATC+CGG | + | chr3.3:850725-850744 | None:intergenic | 35.0% |
| ! | CATTGCAGATGATGATGATT+TGG | + | chr3.3:850615-850634 | None:intergenic | 35.0% |
| ! | TCATAATCGGTTCACTTCTA+TGG | + | chr3.3:849876-849895 | None:intergenic | 35.0% |
| ! | TTGTGACAATTTTGCGTGAT+TGG | - | chr3.3:849669-849688 | MS.gene53231:intron | 35.0% |
| !! | CTTATCTTCGTTTGGTTCTA+TGG | - | chr3.3:849776-849795 | MS.gene53231:intron | 35.0% |
| !!! | TCAGAATTTTGGAGCTTTAC+AGG | + | chr3.3:850554-850573 | None:intergenic | 35.0% |
| ACTCTCACTTGTTTCAACCT+TGG | + | chr3.3:850288-850307 | None:intergenic | 40.0% | |
| AGTGTCACAGTCGTAGAAAA+AGG | - | chr3.3:850261-850280 | MS.gene53231:intron | 40.0% | |
| ATGTCAAAATCAAGAGGGGT+TGG | + | chr3.3:849054-849073 | None:intergenic | 40.0% | |
| ATTTCCCAATCACAACCATC+AGG | + | chr3.3:850038-850057 | None:intergenic | 40.0% | |
| CAGTTCACTTCTTCACATAG+AGG | + | chr3.3:849533-849552 | None:intergenic | 40.0% | |
| CGTGATTGGATTTCGACATT+CGG | - | chr3.3:849683-849702 | MS.gene53231:intron | 40.0% | |
| CTAGGATTTAAGTCCTGACA+TGG | + | chr3.3:848989-849008 | None:intergenic | 40.0% | |
| CTATGTGAAGAAGTGAACTG+TGG | - | chr3.3:849533-849552 | MS.gene53231:CDS | 40.0% | |
| GGTTAAGTAGTCAGAAGTCT+AGG | + | chr3.3:849007-849026 | None:intergenic | 40.0% | |
| TGAGCTGATCAATAAGAAGC+CGG | - | chr3.3:850703-850722 | MS.gene53231:intron | 40.0% | |
| TGATGGTTGTGATTGGGAAA+TGG | - | chr3.3:850037-850056 | MS.gene53231:intron | 40.0% | |
| TGTCAAAATCAAGAGGGGTT+GGG | + | chr3.3:849053-849072 | None:intergenic | 40.0% | |
| TGTTCCTGATGGTTGTGATT+GGG | - | chr3.3:850031-850050 | MS.gene53231:intron | 40.0% | |
| ! | AAAATTCTGAGGGAGAGCAT+TGG | - | chr3.3:850564-850583 | MS.gene53231:intron | 40.0% |
| ! | AATGCTCTCCCTCAGAATTT+TGG | + | chr3.3:850565-850584 | None:intergenic | 40.0% |
| ! | ACATGCTTCTGAAAGAGCAA+AGG | - | chr3.3:850337-850356 | MS.gene53231:intron | 40.0% |
| ! | CCCCTTCATATTTGAAACAC+AGG | + | chr3.3:850148-850167 | None:intergenic | 40.0% |
| ! | TCGTGCTTTTCTTCTCAAGA+AGG | + | chr3.3:849417-849436 | None:intergenic | 40.0% |
| !! | AAATTCTGAGGGAGAGCATT+GGG | - | chr3.3:850565-850584 | MS.gene53231:intron | 40.0% |
| !!! | GTTTGGTTCAGTTTTGGATG+TGG | - | chr3.3:848876-848895 | MS.gene53231:CDS | 40.0% |
| CAGTCGTAGAAAAAGGTCCA+AGG | - | chr3.3:850268-850287 | MS.gene53231:intron | 45.0% | |
| CTGTTCCTGATGGTTGTGAT+TGG | - | chr3.3:850030-850049 | MS.gene53231:intron | 45.0% | |
| GCTACACTTACTGTTCCTGA+TGG | - | chr3.3:850020-850039 | MS.gene53231:intron | 45.0% | |
| !! | AGCTCAACTGGTTTGAGCTA+AGG | + | chr3.3:849029-849048 | None:intergenic | 45.0% |
| !! | GCTCAACTGGTTTGAGCTAA+GGG | + | chr3.3:849028-849047 | None:intergenic | 45.0% |
| AGGGGCAACAATCTGTCTCA+TGG | - | chr3.3:850665-850684 | MS.gene53231:intron | 50.0% | |
| GAGGGGTTGGGTAGCTCAAC+TGG | + | chr3.3:849041-849060 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 848793 | 850772 | 848793 | ID=MS.gene53231 |
| chr3.3 | mRNA | 848793 | 850772 | 848793 | ID=MS.gene53231.t1;Parent=MS.gene53231 |
| chr3.3 | exon | 850731 | 850772 | 850731 | ID=MS.gene53231.t1.exon1;Parent=MS.gene53231.t1 |
| chr3.3 | CDS | 850731 | 850772 | 850731 | ID=cds.MS.gene53231.t1;Parent=MS.gene53231.t1 |
| chr3.3 | exon | 849138 | 849596 | 849138 | ID=MS.gene53231.t1.exon2;Parent=MS.gene53231.t1 |
| chr3.3 | CDS | 849138 | 849596 | 849138 | ID=cds.MS.gene53231.t1;Parent=MS.gene53231.t1 |
| chr3.3 | exon | 848793 | 849059 | 848793 | ID=MS.gene53231.t1.exon3;Parent=MS.gene53231.t1 |
| chr3.3 | CDS | 848793 | 849059 | 848793 | ID=cds.MS.gene53231.t1;Parent=MS.gene53231.t1 |
| Gene Sequence |
| Protein sequence |
