Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53295.t1 | XP_003605324.2 | 93 | 485 | 33 | 1 | 1 | 484 | 1 | 485 | 1.40E-240 | 842 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53295.t1 | O65499 | 29.4 | 310 | 130 | 8 | 66 | 375 | 64 | 284 | 1.7e-21 | 105.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53295.t1 | G7JJH5 | 93.0 | 485 | 33 | 1 | 1 | 484 | 1 | 485 | 9.7e-241 | 842.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene53295.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53295.t1 | MTR_4g028610 | 97.732 | 485 | 10 | 1 | 1 | 484 | 1 | 485 | 0.0 | 984 |
| MS.gene53295.t1 | MTR_4g109340 | 39.130 | 161 | 78 | 4 | 224 | 381 | 345 | 488 | 4.69e-25 | 108 |
| MS.gene53295.t1 | MTR_4g109340 | 26.615 | 387 | 206 | 13 | 6 | 334 | 4 | 370 | 3.44e-18 | 87.8 |
| MS.gene53295.t1 | MTR_1g090703 | 35.345 | 232 | 113 | 10 | 158 | 380 | 98 | 301 | 2.31e-23 | 101 |
| MS.gene53295.t1 | MTR_5g062300 | 40.940 | 149 | 67 | 2 | 227 | 375 | 119 | 246 | 1.90e-21 | 93.6 |
| MS.gene53295.t1 | MTR_5g099040 | 44.737 | 114 | 49 | 3 | 227 | 335 | 130 | 234 | 2.19e-20 | 91.7 |
| MS.gene53295.t1 | MTR_0160s0030 | 36.310 | 168 | 49 | 5 | 215 | 382 | 231 | 340 | 7.29e-20 | 91.3 |
| MS.gene53295.t1 | MTR_1g106730 | 32.000 | 200 | 52 | 4 | 136 | 335 | 39 | 154 | 1.74e-18 | 85.5 |
| MS.gene53295.t1 | MTR_1g062780 | 34.978 | 223 | 106 | 10 | 161 | 380 | 80 | 266 | 1.65e-16 | 80.5 |
| MS.gene53295.t1 | MTR_3g102980 | 29.208 | 202 | 77 | 5 | 134 | 335 | 30 | 165 | 2.96e-16 | 78.6 |
| MS.gene53295.t1 | MTR_2g084315 | 30.041 | 243 | 115 | 9 | 158 | 380 | 67 | 274 | 7.01e-16 | 78.6 |
| MS.gene53295.t1 | MTR_4g057230 | 36.686 | 169 | 75 | 6 | 226 | 380 | 112 | 262 | 6.51e-15 | 75.5 |
| MS.gene53295.t1 | MTR_1g018420 | 28.899 | 218 | 89 | 5 | 157 | 364 | 38 | 199 | 4.42e-14 | 72.0 |
| MS.gene53295.t1 | MTR_1g077730 | 30.159 | 189 | 104 | 5 | 203 | 379 | 21 | 193 | 3.77e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53295.t1 | AT1G02040 | 36.437 | 247 | 99 | 8 | 136 | 377 | 89 | 282 | 1.32e-31 | 124 |
| MS.gene53295.t1 | AT4G35280 | 30.000 | 310 | 128 | 9 | 66 | 375 | 64 | 284 | 4.17e-27 | 110 |
| MS.gene53295.t1 | AT2G17180 | 29.811 | 265 | 99 | 6 | 71 | 335 | 57 | 234 | 4.56e-25 | 104 |
| MS.gene53295.t1 | AT5G03510 | 31.439 | 264 | 142 | 9 | 132 | 392 | 43 | 270 | 1.82e-21 | 94.7 |
| MS.gene53295.t1 | AT2G28200 | 31.967 | 244 | 115 | 9 | 148 | 380 | 58 | 261 | 7.87e-20 | 90.1 |
| MS.gene53295.t1 | AT3G60580 | 30.088 | 226 | 90 | 4 | 156 | 381 | 121 | 278 | 2.34e-19 | 88.6 |
| MS.gene53295.t1 | AT5G04390 | 31.148 | 244 | 125 | 9 | 158 | 380 | 96 | 317 | 3.53e-19 | 89.4 |
| MS.gene53295.t1 | AT3G10470 | 33.714 | 175 | 90 | 2 | 226 | 380 | 181 | 349 | 6.01e-18 | 86.3 |
| MS.gene53295.t1 | AT3G49930 | 31.188 | 202 | 74 | 5 | 134 | 335 | 36 | 172 | 7.01e-18 | 82.8 |
| MS.gene53295.t1 | AT1G02030 | 29.012 | 324 | 143 | 10 | 78 | 384 | 7 | 260 | 7.27e-18 | 84.0 |
| MS.gene53295.t1 | AT5G56200 | 33.793 | 145 | 69 | 2 | 229 | 362 | 344 | 472 | 9.78e-18 | 86.3 |
| MS.gene53295.t1 | AT3G19580 | 30.986 | 213 | 80 | 8 | 134 | 335 | 32 | 188 | 1.11e-16 | 80.5 |
| MS.gene53295.t1 | AT3G19580 | 30.986 | 213 | 80 | 8 | 134 | 335 | 32 | 188 | 1.11e-16 | 80.5 |
| MS.gene53295.t1 | AT5G67450 | 31.220 | 205 | 88 | 6 | 134 | 335 | 33 | 187 | 1.25e-16 | 79.7 |
| MS.gene53295.t1 | AT1G49900 | 36.364 | 110 | 37 | 3 | 226 | 335 | 192 | 268 | 3.28e-12 | 69.7 |
Find 87 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAATAACCCTACATTAA+TGG | 0.180867 | 4.3:+71225717 | MS.gene53295:CDS |
| ATTTAGGTATTTGTTCTATT+TGG | 0.213723 | 4.3:-71225897 | None:intergenic |
| TCTGCCATGGCGTCGGATTC+TGG | 0.241406 | 4.3:-71225175 | None:intergenic |
| AGCCATTAATGTAGGGTTAT+TGG | 0.241430 | 4.3:-71225719 | None:intergenic |
| TCAGAAGAGTTATCAAATTT+AGG | 0.259764 | 4.3:-71225913 | None:intergenic |
| GGCAAAATTAAGTGAGTTAA+AGG | 0.281586 | 4.3:+71226185 | MS.gene53295:CDS |
| TTCAATTCACATCAAGCATT+AGG | 0.345187 | 4.3:+71225541 | MS.gene53295:CDS |
| GAATACATACGTTTGTTACT+TGG | 0.350695 | 4.3:-71225013 | None:intergenic |
| TTTGGATGTGGAAGAGCATT+AGG | 0.359877 | 4.3:+71224899 | MS.gene53295:CDS |
| TTGTCGGAGCCGGAAGATTA+AGG | 0.360072 | 4.3:-71225957 | None:intergenic |
| CCATGGTTGCAAGTTGGAAT+TGG | 0.363083 | 4.3:+71226237 | MS.gene53295:CDS |
| CAAACTTGACCTTAATCTTC+CGG | 0.388092 | 4.3:+71225948 | MS.gene53295:CDS |
| AAACAACAATAACAACAATA+AGG | 0.396628 | 4.3:+71225468 | MS.gene53295:CDS |
| TGTCACAGGAGTTTCTCTTC+AGG | 0.396944 | 4.3:+71225784 | MS.gene53295:CDS |
| TTCTCTTCAGGACAAGCATT+AGG | 0.410263 | 4.3:+71225796 | MS.gene53295:CDS |
| AGGTCAAGTTTGAGATCAAT+TGG | 0.419542 | 4.3:-71225937 | None:intergenic |
| AATTGAACATTCATGCACTT+TGG | 0.420744 | 4.3:-71225761 | None:intergenic |
| GCTGAGGCACATGATTCTTC+CGG | 0.421597 | 4.3:-71225376 | None:intergenic |
| AGATCTTCTTCTTCACTTGA+AGG | 0.423728 | 4.3:-71225298 | None:intergenic |
| CCATAGAGCAAGTCACAAAA+AGG | 0.435253 | 4.3:+71225567 | MS.gene53295:CDS |
| AAGTAAATTTGTGTATTTGT+CGG | 0.443913 | 4.3:-71225973 | None:intergenic |
| GATGAAGAAGCCATTAATGT+AGG | 0.452698 | 4.3:-71225727 | None:intergenic |
| TGATGATCCGGCGAGCGATT+GGG | 0.454164 | 4.3:+71224973 | MS.gene53295:CDS |
| TCCTCAACAATACTATCATC+AGG | 0.455329 | 4.3:-71225625 | None:intergenic |
| TTCTTCATCTTTGCTAGCTG+AGG | 0.456328 | 4.3:-71225392 | None:intergenic |
| AAGGATGTAATTAACATTGG+TGG | 0.466872 | 4.3:+71226204 | MS.gene53295:CDS |
| ATGGTGATGGCGTCAGTGGC+AGG | 0.472265 | 4.3:+71225200 | MS.gene53295:CDS |
| TGATCCTCTTGAGGTTGAAC+CGG | 0.478585 | 4.3:+71225357 | MS.gene53295:CDS |
| ATGATGATCCGGCGAGCGAT+TGG | 0.479445 | 4.3:+71224972 | MS.gene53295:CDS |
| AAGCGATGAAACAAGTCAAA+TGG | 0.487942 | 4.3:+71224946 | MS.gene53295:CDS |
| AAATTTACTTGCAACCAACA+TGG | 0.497835 | 4.3:+71225986 | MS.gene53295:CDS |
| TGCTATTGTTGATCCTCTTG+AGG | 0.500759 | 4.3:+71225348 | MS.gene53295:CDS |
| AATTTACTTGCAACCAACAT+GGG | 0.509114 | 4.3:+71225987 | MS.gene53295:CDS |
| AGATGATAGCAAGGTTAAGC+TGG | 0.510318 | 4.3:+71226164 | MS.gene53295:CDS |
| AAGGCCAAAGGTGTTGCAAA+AGG | 0.512681 | 4.3:+71225487 | MS.gene53295:CDS |
| GAGGATGTGGCTGGTCGAAA+AGG | 0.514988 | 4.3:+71225224 | MS.gene53295:CDS |
| ACATACGTTTGTTACTTGGT+GGG | 0.515314 | 4.3:-71225009 | None:intergenic |
| CCGGCGAGCGATTGGGAAGG+TGG | 0.515356 | 4.3:+71224980 | MS.gene53295:CDS |
| AAACAACAACCTTAATGCAT+TGG | 0.516007 | 4.3:+71226122 | MS.gene53295:CDS |
| TACATACGTTTGTTACTTGG+TGG | 0.516103 | 4.3:-71225010 | None:intergenic |
| TCAAATGGACGATGATGATC+CGG | 0.517310 | 4.3:+71224961 | MS.gene53295:CDS |
| TTAAAGGATGTAATTAACAT+TGG | 0.518467 | 4.3:+71226201 | MS.gene53295:CDS |
| AAATTGTATGGCTTTGATTG+TGG | 0.523384 | 4.3:+71224829 | None:intergenic |
| AGGTCGATGCGAACTAAAGT+AGG | 0.524376 | 4.3:+71225250 | MS.gene53295:CDS |
| GTGGTCACAAGAGATGTCAT+TGG | 0.533236 | 4.3:+71225818 | MS.gene53295:CDS |
| TCTTCACCATGGTTGCAAGT+TGG | 0.534611 | 4.3:+71226231 | MS.gene53295:CDS |
| CCACCTTCCCAATCGCTCGC+CGG | 0.538021 | 4.3:-71224980 | None:intergenic |
| GTCAGTGGCAGGAGAGGATG+TGG | 0.539916 | 4.3:+71225211 | MS.gene53295:CDS |
| TCAACTCTACAATTTGATCA+TGG | 0.541203 | 4.3:+71225691 | MS.gene53295:CDS |
| AAGAGGATCAACAATAGCAT+TGG | 0.543537 | 4.3:-71225344 | None:intergenic |
| ATGAATGTTCAATTTGTCAC+AGG | 0.545564 | 4.3:+71225770 | MS.gene53295:CDS |
| GACGATGGTGATGGCGTCAG+TGG | 0.546521 | 4.3:+71225196 | MS.gene53295:CDS |
| CCAATTCCAACTTGCAACCA+TGG | 0.547493 | 4.3:-71226237 | None:intergenic |
| ATGAAGAAGCCATTAATGTA+GGG | 0.551910 | 4.3:-71225726 | None:intergenic |
| CTAGCCAATGTTGATGTGTC+GGG | 0.553643 | 4.3:-71225856 | None:intergenic |
| GGAGGACATATGAGAGCTCA+TGG | 0.556898 | 4.3:+71224920 | MS.gene53295:CDS |
| ATTTGTGTATTTGTCGGAGC+CGG | 0.557536 | 4.3:-71225967 | None:intergenic |
| GTGGCTGGTCGAAAAGGAAA+AGG | 0.562748 | 4.3:+71225230 | MS.gene53295:CDS |
| CTCTCCAGAATCCGACGCCA+TGG | 0.566778 | 4.3:+71225171 | MS.gene53295:CDS |
| GCCATCACCATCGTCTGCCA+TGG | 0.569907 | 4.3:-71225188 | None:intergenic |
| TGGAAATCATTCCTCGAACA+CGG | 0.572286 | 4.3:+71225106 | MS.gene53295:CDS |
| CCTAGCCAATGTTGATGTGT+CGG | 0.581613 | 4.3:-71225857 | None:intergenic |
| AATTCACATCAAGCATTAGG+TGG | 0.583717 | 4.3:+71225544 | MS.gene53295:CDS |
| GTGGCAGGAGAGGATGTGGC+TGG | 0.584863 | 4.3:+71225215 | MS.gene53295:CDS |
| CTTGAATTTGCACCCCATGT+TGG | 0.585693 | 4.3:-71226000 | None:intergenic |
| TGCACCCGACACATCAACAT+TGG | 0.597550 | 4.3:+71225852 | MS.gene53295:CDS |
| CCGACACATCAACATTGGCT+AGG | 0.600465 | 4.3:+71225857 | MS.gene53295:CDS |
| ACCATCGTCTGCCATGGCGT+CGG | 0.604106 | 4.3:-71225182 | None:intergenic |
| TCTTCCGGTTCAACCTCAAG+AGG | 0.608243 | 4.3:-71225361 | None:intergenic |
| TGATAATGAAGATGATAGCA+AGG | 0.609766 | 4.3:+71226155 | MS.gene53295:CDS |
| CCTCAACAATACTATCATCA+GGG | 0.616413 | 4.3:-71225624 | None:intergenic |
| TGCAAATTCAAGTACAACAA+AGG | 0.619130 | 4.3:+71226011 | MS.gene53295:CDS |
| TCTTCAGGACAAGCATTAGG+TGG | 0.619434 | 4.3:+71225799 | MS.gene53295:CDS |
| AATAACAACAATAAGGCCAA+AGG | 0.626216 | 4.3:+71225475 | MS.gene53295:CDS |
| CCCTGATGATAGTATTGTTG+AGG | 0.628128 | 4.3:+71225624 | MS.gene53295:CDS |
| GATGGCGTCAGTGGCAGGAG+AGG | 0.632559 | 4.3:+71225205 | MS.gene53295:CDS |
| GGATGTGGAAGAGCATTAGG+AGG | 0.639239 | 4.3:+71224902 | MS.gene53295:CDS |
| ATTTACTTGCAACCAACATG+GGG | 0.643546 | 4.3:+71225988 | MS.gene53295:CDS |
| GCCATGGCAGACGATGGTGA+TGG | 0.647379 | 4.3:+71225187 | MS.gene53295:CDS |
| TCCGACGCCATGGCAGACGA+TGG | 0.647564 | 4.3:+71225181 | MS.gene53295:CDS |
| TAGGGAATTCTATAAGACAA+TGG | 0.648546 | 4.3:-71225442 | None:intergenic |
| AAAGGACAACAACATCAAAG+AGG | 0.651093 | 4.3:+71226029 | MS.gene53295:CDS |
| GATCCGGCGAGCGATTGGGA+AGG | 0.658250 | 4.3:+71224977 | MS.gene53295:CDS |
| CATGGCGTCGGATTCTGGAG+AGG | 0.659545 | 4.3:-71225170 | None:intergenic |
| TTGGTGGAAGTTCTTCACCA+TGG | 0.661371 | 4.3:+71226220 | MS.gene53295:CDS |
| TTGGTACAACAACTGATGTG+AGG | 0.681780 | 4.3:+71226256 | MS.gene53295:CDS |
| TGTAGGGTGTGTGAGCATTG+TGG | 0.711110 | 4.3:+71225067 | MS.gene53295:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTAAAATTTGCAAAAA+AGG | + | chr4.3:71224875-71224894 | MS.gene53295:CDS | 15.0% |
| !! | AAACAACAATAACAACAATA+AGG | + | chr4.3:71225468-71225487 | MS.gene53295:CDS | 20.0% |
| !! | AAGTAAATTTGTGTATTTGT+CGG | - | chr4.3:71225976-71225995 | None:intergenic | 20.0% |
| !! | ATTTAGGTATTTGTTCTATT+TGG | - | chr4.3:71225900-71225919 | None:intergenic | 20.0% |
| !! | TAATAAGCTAAAAAGTTGTA+GGG | + | chr4.3:71225051-71225070 | MS.gene53295:CDS | 20.0% |
| !! | TTAAAGGATGTAATTAACAT+TGG | + | chr4.3:71226201-71226220 | MS.gene53295:CDS | 20.0% |
| !!! | TTGTTATTGTTGTTTTCATA+GGG | - | chr4.3:71225463-71225482 | None:intergenic | 20.0% |
| !!! | TTTCATTATTTTGATCAACT+AGG | - | chr4.3:71226086-71226105 | None:intergenic | 20.0% |
| ! | AAAATTTGCAAAAAAGGCTT+TGG | + | chr4.3:71224881-71224900 | MS.gene53295:CDS | 25.0% |
| ! | CTAATAAGCTAAAAAGTTGT+AGG | + | chr4.3:71225050-71225069 | MS.gene53295:CDS | 25.0% |
| ! | TCAGAAGAGTTATCAAATTT+AGG | - | chr4.3:71225916-71225935 | None:intergenic | 25.0% |
| !!! | CTACAACTTTTTAGCTTATT+AGG | - | chr4.3:71225052-71225071 | None:intergenic | 25.0% |
| !!! | GGTTTTTGTTTTGATTTTGT+TGG | - | chr4.3:71226065-71226084 | None:intergenic | 25.0% |
| !!! | GTTGTTATTGTTGTTTTCAT+AGG | - | chr4.3:71225464-71225483 | None:intergenic | 25.0% |
| AAACAACAACCTTAATGCAT+TGG | + | chr4.3:71226122-71226141 | MS.gene53295:CDS | 30.0% | |
| AAATTTACTTGCAACCAACA+TGG | + | chr4.3:71225986-71226005 | MS.gene53295:CDS | 30.0% | |
| AAGGATGTAATTAACATTGG+TGG | + | chr4.3:71226204-71226223 | MS.gene53295:CDS | 30.0% | |
| AATAACAACAATAAGGCCAA+AGG | + | chr4.3:71225475-71225494 | MS.gene53295:CDS | 30.0% | |
| AATTGAACATTCATGCACTT+TGG | - | chr4.3:71225764-71225783 | None:intergenic | 30.0% | |
| AATTTACTTGCAACCAACAT+GGG | + | chr4.3:71225987-71226006 | MS.gene53295:CDS | 30.0% | |
| ATGAAGAAGCCATTAATGTA+GGG | - | chr4.3:71225729-71225748 | None:intergenic | 30.0% | |
| ATGAATGTTCAATTTGTCAC+AGG | + | chr4.3:71225770-71225789 | MS.gene53295:CDS | 30.0% | |
| GGCAAAATTAAGTGAGTTAA+AGG | + | chr4.3:71226185-71226204 | MS.gene53295:CDS | 30.0% | |
| TAGGGAATTCTATAAGACAA+TGG | - | chr4.3:71225445-71225464 | None:intergenic | 30.0% | |
| TCAACTCTACAATTTGATCA+TGG | + | chr4.3:71225691-71225710 | MS.gene53295:CDS | 30.0% | |
| TGCAAATTCAAGTACAACAA+AGG | + | chr4.3:71226011-71226030 | MS.gene53295:CDS | 30.0% | |
| TTCAATTCACATCAAGCATT+AGG | + | chr4.3:71225541-71225560 | MS.gene53295:CDS | 30.0% | |
| TTCCAATAACCCTACATTAA+TGG | + | chr4.3:71225717-71225736 | MS.gene53295:CDS | 30.0% | |
| ! | CATTTTGTACCAATGCATTA+AGG | - | chr4.3:71226134-71226153 | None:intergenic | 30.0% |
| ! | GAATACATACGTTTGTTACT+TGG | - | chr4.3:71225016-71225035 | None:intergenic | 30.0% |
| ! | TGATAATGAAGATGATAGCA+AGG | + | chr4.3:71226155-71226174 | MS.gene53295:CDS | 30.0% |
| !! | AGAGTTGAGTTTGATTTTGA+AGG | - | chr4.3:71225679-71225698 | None:intergenic | 30.0% |
| !!! | GTGGCAAAGAATTTTTTTCT+TGG | + | chr4.3:71225086-71225105 | MS.gene53295:CDS | 30.0% |
| AAAGGACAACAACATCAAAG+AGG | + | chr4.3:71226029-71226048 | MS.gene53295:CDS | 35.0% | |
| AAGAGGATCAACAATAGCAT+TGG | - | chr4.3:71225347-71225366 | None:intergenic | 35.0% | |
| AAGCGATGAAACAAGTCAAA+TGG | + | chr4.3:71224946-71224965 | MS.gene53295:CDS | 35.0% | |
| AATTCACATCAAGCATTAGG+TGG | + | chr4.3:71225544-71225563 | MS.gene53295:CDS | 35.0% | |
| AGATCTTCTTCTTCACTTGA+AGG | - | chr4.3:71225301-71225320 | None:intergenic | 35.0% | |
| AGCAAGTCACAAAAAGGTTA+AGG | + | chr4.3:71225573-71225592 | MS.gene53295:CDS | 35.0% | |
| AGCCATTAATGTAGGGTTAT+TGG | - | chr4.3:71225722-71225741 | None:intergenic | 35.0% | |
| ATTTACTTGCAACCAACATG+GGG | + | chr4.3:71225988-71226007 | MS.gene53295:CDS | 35.0% | |
| CAAACTTGACCTTAATCTTC+CGG | + | chr4.3:71225948-71225967 | MS.gene53295:CDS | 35.0% | |
| CCTCAACAATACTATCATCA+GGG | - | chr4.3:71225627-71225646 | None:intergenic | 35.0% | |
| GATGAAGAAGCCATTAATGT+AGG | - | chr4.3:71225730-71225749 | None:intergenic | 35.0% | |
| GCAAGTCACAAAAAGGTTAA+GGG | + | chr4.3:71225574-71225593 | MS.gene53295:CDS | 35.0% | |
| TCCTCAACAATACTATCATC+AGG | - | chr4.3:71225628-71225647 | None:intergenic | 35.0% | |
| ! | ACATACGTTTGTTACTTGGT+GGG | - | chr4.3:71225012-71225031 | None:intergenic | 35.0% |
| ! | AGGTCAAGTTTGAGATCAAT+TGG | - | chr4.3:71225940-71225959 | None:intergenic | 35.0% |
| ! | ATGCACTTTGGATTTTCTCT+TGG | - | chr4.3:71225752-71225771 | None:intergenic | 35.0% |
| ! | TAATCCTTTTGCAACACCTT+TGG | - | chr4.3:71225494-71225513 | None:intergenic | 35.0% |
| ! | TACATACGTTTGTTACTTGG+TGG | - | chr4.3:71225013-71225032 | None:intergenic | 35.0% |
| AGATGATAGCAAGGTTAAGC+TGG | + | chr4.3:71226164-71226183 | MS.gene53295:CDS | 40.0% | |
| ATTTGTGTATTTGTCGGAGC+CGG | - | chr4.3:71225970-71225989 | None:intergenic | 40.0% | |
| CCATAGAGCAAGTCACAAAA+AGG | + | chr4.3:71225567-71225586 | MS.gene53295:CDS | 40.0% | |
| CCCTGATGATAGTATTGTTG+AGG | + | chr4.3:71225624-71225643 | MS.gene53295:CDS | 40.0% | |
| TCAAATGGACGATGATGATC+CGG | + | chr4.3:71224961-71224980 | MS.gene53295:CDS | 40.0% | |
| TGCTATTGTTGATCCTCTTG+AGG | + | chr4.3:71225348-71225367 | MS.gene53295:CDS | 40.0% | |
| TGGAAATCATTCCTCGAACA+CGG | + | chr4.3:71225106-71225125 | MS.gene53295:CDS | 40.0% | |
| TTCTCTTCAGGACAAGCATT+AGG | + | chr4.3:71225796-71225815 | MS.gene53295:CDS | 40.0% | |
| TTCTTCATCTTTGCTAGCTG+AGG | - | chr4.3:71225395-71225414 | None:intergenic | 40.0% | |
| TTGGTACAACAACTGATGTG+AGG | + | chr4.3:71226256-71226275 | MS.gene53295:CDS | 40.0% | |
| ! | TTAAGGGATGTTTTGCTGCA+AGG | + | chr4.3:71225590-71225609 | MS.gene53295:CDS | 40.0% |
| !! | TGCAAAAAAGGCTTTGGATG+TGG | + | chr4.3:71224887-71224906 | MS.gene53295:CDS | 40.0% |
| !! | TTTGGATGTGGAAGAGCATT+AGG | + | chr4.3:71224899-71224918 | MS.gene53295:CDS | 40.0% |
| !!! | CCTTTTTGTGACTTGCTCTA+TGG | - | chr4.3:71225570-71225589 | None:intergenic | 40.0% |
| AGGTCGATGCGAACTAAAGT+AGG | + | chr4.3:71225250-71225269 | MS.gene53295:CDS | 45.0% | |
| CCAATTCCAACTTGCAACCA+TGG | - | chr4.3:71226240-71226259 | None:intergenic | 45.0% | |
| CCTAGCCAATGTTGATGTGT+CGG | - | chr4.3:71225860-71225879 | None:intergenic | 45.0% | |
| CTAGCCAATGTTGATGTGTC+GGG | - | chr4.3:71225859-71225878 | None:intergenic | 45.0% | |
| CTTGAATTTGCACCCCATGT+TGG | - | chr4.3:71226003-71226022 | None:intergenic | 45.0% | |
| GTGGTCACAAGAGATGTCAT+TGG | + | chr4.3:71225818-71225837 | MS.gene53295:CDS | 45.0% | |
| TCTTCACCATGGTTGCAAGT+TGG | + | chr4.3:71226231-71226250 | MS.gene53295:CDS | 45.0% | |
| TCTTCAGGACAAGCATTAGG+TGG | + | chr4.3:71225799-71225818 | MS.gene53295:CDS | 45.0% | |
| TGATCCTCTTGAGGTTGAAC+CGG | + | chr4.3:71225357-71225376 | MS.gene53295:CDS | 45.0% | |
| TGTCACAGGAGTTTCTCTTC+AGG | + | chr4.3:71225784-71225803 | MS.gene53295:CDS | 45.0% | |
| TTGGTGGAAGTTCTTCACCA+TGG | + | chr4.3:71226220-71226239 | MS.gene53295:CDS | 45.0% | |
| ! | AGTTGCATTTTCCGTGTTCG+AGG | - | chr4.3:71225120-71225139 | None:intergenic | 45.0% |
| ! | CCATGGTTGCAAGTTGGAAT+TGG | + | chr4.3:71226237-71226256 | MS.gene53295:CDS | 45.0% |
| !! | AAGGCCAAAGGTGTTGCAAA+AGG | + | chr4.3:71225487-71225506 | MS.gene53295:CDS | 45.0% |
| GCTGAGGCACATGATTCTTC+CGG | - | chr4.3:71225379-71225398 | None:intergenic | 50.0% | |
| GGAGGACATATGAGAGCTCA+TGG | + | chr4.3:71224920-71224939 | MS.gene53295:CDS | 50.0% | |
| TCTTCCGGTTCAACCTCAAG+AGG | - | chr4.3:71225364-71225383 | None:intergenic | 50.0% | |
| TGCACCCGACACATCAACAT+TGG | + | chr4.3:71225852-71225871 | MS.gene53295:CDS | 50.0% | |
| TTGTCGGAGCCGGAAGATTA+AGG | - | chr4.3:71225960-71225979 | None:intergenic | 50.0% | |
| ! | CCGACACATCAACATTGGCT+AGG | + | chr4.3:71225857-71225876 | MS.gene53295:CDS | 50.0% |
| ! | GTGGCTGGTCGAAAAGGAAA+AGG | + | chr4.3:71225230-71225249 | MS.gene53295:CDS | 50.0% |
| ! | TGTAGGGTGTGTGAGCATTG+TGG | + | chr4.3:71225067-71225086 | MS.gene53295:CDS | 50.0% |
| !! | GGATGTGGAAGAGCATTAGG+AGG | + | chr4.3:71224902-71224921 | MS.gene53295:CDS | 50.0% |
| ATGATGATCCGGCGAGCGAT+TGG | + | chr4.3:71224972-71224991 | MS.gene53295:CDS | 55.0% | |
| TGATGATCCGGCGAGCGATT+GGG | + | chr4.3:71224973-71224992 | MS.gene53295:CDS | 55.0% | |
| ! | GAGGATGTGGCTGGTCGAAA+AGG | + | chr4.3:71225224-71225243 | MS.gene53295:CDS | 55.0% |
| ACCATCGTCTGCCATGGCGT+CGG | - | chr4.3:71225185-71225204 | None:intergenic | 60.0% | |
| CTCTCCAGAATCCGACGCCA+TGG | + | chr4.3:71225171-71225190 | MS.gene53295:CDS | 60.0% | |
| GCCATCACCATCGTCTGCCA+TGG | - | chr4.3:71225191-71225210 | None:intergenic | 60.0% | |
| GCCATGGCAGACGATGGTGA+TGG | + | chr4.3:71225187-71225206 | MS.gene53295:CDS | 60.0% | |
| GTCAGTGGCAGGAGAGGATG+TGG | + | chr4.3:71225211-71225230 | MS.gene53295:CDS | 60.0% | |
| ! | CATGGCGTCGGATTCTGGAG+AGG | - | chr4.3:71225173-71225192 | None:intergenic | 60.0% |
| ! | TCTGCCATGGCGTCGGATTC+TGG | - | chr4.3:71225178-71225197 | None:intergenic | 60.0% |
| !! | ATGGTGATGGCGTCAGTGGC+AGG | + | chr4.3:71225200-71225219 | MS.gene53295:CDS | 60.0% |
| !! | GACGATGGTGATGGCGTCAG+TGG | + | chr4.3:71225196-71225215 | MS.gene53295:CDS | 60.0% |
| CCACCTTCCCAATCGCTCGC+CGG | - | chr4.3:71224983-71225002 | None:intergenic | 65.0% | |
| GATCCGGCGAGCGATTGGGA+AGG | + | chr4.3:71224977-71224996 | MS.gene53295:CDS | 65.0% | |
| GATGGCGTCAGTGGCAGGAG+AGG | + | chr4.3:71225205-71225224 | MS.gene53295:CDS | 65.0% | |
| GTGGCAGGAGAGGATGTGGC+TGG | + | chr4.3:71225215-71225234 | MS.gene53295:CDS | 65.0% | |
| TCCGACGCCATGGCAGACGA+TGG | + | chr4.3:71225181-71225200 | MS.gene53295:CDS | 65.0% | |
| CCGGCGAGCGATTGGGAAGG+TGG | + | chr4.3:71224980-71224999 | MS.gene53295:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 71224836 | 71226290 | 71224836 | ID=MS.gene53295 |
| chr4.3 | mRNA | 71224836 | 71226290 | 71224836 | ID=MS.gene53295.t1;Parent=MS.gene53295 |
| chr4.3 | exon | 71224836 | 71226290 | 71224836 | ID=MS.gene53295.t1.exon1;Parent=MS.gene53295.t1 |
| chr4.3 | CDS | 71224836 | 71226290 | 71224836 | ID=cds.MS.gene53295.t1;Parent=MS.gene53295.t1 |
| Gene Sequence |
| Protein sequence |
