Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53331.t1 | XP_013444421.1 | 99.6 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 4.50E-118 | 434.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53331.t1 | O81488 | 85.9 | 255 | 35 | 1 | 1 | 255 | 1 | 254 | 4.0e-99 | 362.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53331.t1 | A0FK62 | 99.6 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 3.2e-118 | 434.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene53331.t1 | TF | Alfin-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53331.t1 | MTR_8g019520 | 99.609 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 0.0 | 532 |
| MS.gene53331.t1 | MTR_8g019520 | 99.222 | 257 | 1 | 1 | 1 | 256 | 1 | 257 | 0.0 | 528 |
| MS.gene53331.t1 | MTR_2g099500 | 80.081 | 246 | 48 | 1 | 10 | 255 | 6 | 250 | 9.57e-123 | 350 |
| MS.gene53331.t1 | MTR_2g040990 | 72.441 | 254 | 60 | 3 | 5 | 256 | 8 | 253 | 1.71e-121 | 347 |
| MS.gene53331.t1 | MTR_1g015185 | 74.903 | 259 | 53 | 3 | 7 | 256 | 8 | 263 | 3.89e-121 | 346 |
| MS.gene53331.t1 | MTR_4g134510 | 73.361 | 244 | 64 | 1 | 9 | 252 | 10 | 252 | 1.54e-117 | 337 |
| MS.gene53331.t1 | MTR_4g015830 | 63.052 | 249 | 78 | 7 | 8 | 256 | 6 | 240 | 1.22e-93 | 275 |
| MS.gene53331.t1 | MTR_7g068590 | 60.643 | 249 | 86 | 7 | 8 | 256 | 6 | 242 | 2.73e-90 | 267 |
| MS.gene53331.t1 | MTR_1g015185 | 88.112 | 143 | 17 | 0 | 7 | 149 | 8 | 150 | 1.12e-82 | 246 |
| MS.gene53331.t1 | MTR_8g066480 | 55.797 | 138 | 40 | 6 | 120 | 256 | 29 | 146 | 1.95e-28 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53331.t1 | AT5G20510 | 71.373 | 255 | 68 | 2 | 6 | 256 | 7 | 260 | 1.52e-122 | 349 |
| MS.gene53331.t1 | AT3G42790 | 73.896 | 249 | 58 | 4 | 7 | 255 | 8 | 249 | 1.97e-121 | 346 |
| MS.gene53331.t1 | AT2G02470 | 68.340 | 259 | 76 | 4 | 1 | 256 | 1 | 256 | 1.13e-108 | 314 |
| MS.gene53331.t1 | AT2G02470 | 68.359 | 256 | 72 | 4 | 1 | 256 | 1 | 247 | 2.73e-108 | 313 |
| MS.gene53331.t1 | AT1G14510 | 68.421 | 247 | 74 | 3 | 9 | 255 | 9 | 251 | 8.31e-108 | 312 |
| MS.gene53331.t1 | AT5G26210 | 71.483 | 263 | 58 | 3 | 1 | 255 | 1 | 254 | 1.18e-103 | 301 |
| MS.gene53331.t1 | AT5G05610 | 63.673 | 245 | 76 | 5 | 8 | 252 | 7 | 238 | 2.64e-97 | 285 |
| MS.gene53331.t1 | AT5G05610 | 63.673 | 245 | 76 | 5 | 8 | 252 | 7 | 238 | 2.64e-97 | 285 |
| MS.gene53331.t1 | AT5G20510 | 69.585 | 217 | 61 | 2 | 44 | 256 | 4 | 219 | 4.04e-96 | 281 |
| MS.gene53331.t1 | AT3G11200 | 63.200 | 250 | 82 | 5 | 3 | 252 | 4 | 243 | 1.55e-93 | 275 |
| MS.gene53331.t1 | AT5G20510 | 74.843 | 159 | 40 | 0 | 6 | 164 | 7 | 165 | 1.12e-81 | 243 |
| MS.gene53331.t1 | AT3G11200 | 62.212 | 217 | 72 | 5 | 36 | 252 | 24 | 230 | 1.25e-77 | 234 |
| MS.gene53331.t1 | AT2G02470 | 74.051 | 158 | 40 | 1 | 1 | 158 | 1 | 157 | 4.97e-71 | 218 |
Find 71 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTGCTTAACCTGAGGTTC+TGG | 0.298478 | 8.4:-73725391 | None:intergenic |
| TCAATATTTGAAGTTGTTAC+TGG | 0.306554 | 8.4:+73724476 | MS.gene53331:CDS |
| TACTACTTTGGTGCCAGATT+TGG | 0.319173 | 8.4:+73724286 | MS.gene53331:CDS |
| AGAGAAAGACTGGCTATCTT+TGG | 0.329748 | 8.4:+73724225 | MS.gene53331:CDS |
| TCCTCCACCTCATCATCTTT+AGG | 0.341682 | 8.4:-73725430 | None:intergenic |
| TGCTTGGCATTAACTTTGCC+AGG | 0.360860 | 8.4:+73724191 | MS.gene53331:CDS |
| AGATGATGAGGTGGAGGAAC+TGG | 0.383921 | 8.4:+73725435 | MS.gene53331:CDS |
| TACCGCTTTCGAGCTGGACT+TGG | 0.388039 | 8.4:-73724558 | None:intergenic |
| ATTATGGCACTGATGAATTC+TGG | 0.392260 | 8.4:+73725512 | MS.gene53331:CDS |
| AGATTTGTCGAAGCCAAATC+TGG | 0.397894 | 8.4:-73724299 | None:intergenic |
| AGCACGGGCTCGGGAAGCTC+TGG | 0.403718 | 8.4:-73724172 | None:intergenic |
| GAGCTTCCCGAGCCCGTGCT+TGG | 0.406007 | 8.4:+73724175 | MS.gene53331:CDS |
| GGCATTAACTTTGCCAGGGA+TGG | 0.411593 | 8.4:+73724196 | MS.gene53331:CDS |
| TTGATATGCTCAGCCCTAGC+AGG | 0.419284 | 8.4:-73725589 | None:intergenic |
| GTTAATGCCAAGCACGGGCT+CGG | 0.422381 | 8.4:-73724182 | None:intergenic |
| TTTCTCTTGCATGCCATCCC+TGG | 0.429424 | 8.4:-73724209 | None:intergenic |
| AAGGAGAACCTGTGCTTGTA+TGG | 0.431624 | 8.4:+73724100 | MS.gene53331:CDS |
| TTGCTGTTCACAGTGATTCA+TGG | 0.433165 | 8.4:+73724248 | MS.gene53331:CDS |
| GGTGCATGCGGTGAGCATTA+TGG | 0.433315 | 8.4:+73725496 | MS.gene53331:CDS |
| GATCATTGATCATGTTGAAC+AGG | 0.434639 | 8.4:-73724448 | None:intergenic |
| GTTCTATACCCAATGTGATC+CGG | 0.448947 | 8.4:+73723535 | MS.gene53331:CDS |
| ATCGCCATTGCGTACTACTT+TGG | 0.461307 | 8.4:+73724274 | MS.gene53331:CDS |
| TTGACTTCCCACTGCTCACT+AGG | 0.465024 | 8.4:-73724127 | None:intergenic |
| ATTATTTACCGCTTTCGAGC+TGG | 0.469549 | 8.4:-73724564 | None:intergenic |
| CTCTTATTGTTACTGCATGA+TGG | 0.471278 | 8.4:-73725625 | None:intergenic |
| ATCTGCGAGAAGTGGTTCCA+TGG | 0.475159 | 8.4:+73725547 | MS.gene53331:CDS |
| TAACTTACCCGGATCACATT+GGG | 0.487332 | 8.4:-73723543 | None:intergenic |
| CTCACCGCATGCACCACATA+AGG | 0.495356 | 8.4:-73725488 | None:intergenic |
| GTAACAACTTCAAATATTGA+TGG | 0.502359 | 8.4:-73724473 | None:intergenic |
| TTCTATACCCAATGTGATCC+GGG | 0.502678 | 8.4:+73723536 | MS.gene53331:CDS |
| TTAATGCCAAGCACGGGCTC+GGG | 0.511639 | 8.4:-73724181 | None:intergenic |
| GGCTTTGTCTGCTTAACCTG+AGG | 0.513964 | 8.4:-73725397 | None:intergenic |
| TGATATGCTCAGCCCTAGCA+GGG | 0.516021 | 8.4:-73725588 | None:intergenic |
| GTGTGAAGATCACCCCTGCT+AGG | 0.516439 | 8.4:+73725575 | MS.gene53331:CDS |
| GCAGCGGGCTCCAGAACCTC+AGG | 0.519888 | 8.4:+73725381 | MS.gene53331:intron |
| CTCATCAAAGCTCTCACCAC+TGG | 0.525319 | 8.4:+73722024 | MS.gene53331:CDS |
| ATGGCATGCAAGAGAAAGAC+TGG | 0.534454 | 8.4:+73724215 | MS.gene53331:CDS |
| TCTGGCGGAACTTCCTCAGC+AGG | 0.540129 | 8.4:-73724154 | None:intergenic |
| ACCTAAAGATGATGAGGTGG+AGG | 0.542306 | 8.4:+73725429 | MS.gene53331:CDS |
| ACGGGCTCGGGAAGCTCTGG+CGG | 0.548775 | 8.4:-73724169 | None:intergenic |
| GGTTAAGCAGACAAAGCCAT+TGG | 0.555690 | 8.4:+73725402 | MS.gene53331:CDS |
| AAAACTTCCTCAACGGTGCG+TGG | 0.559807 | 8.4:-73721973 | None:intergenic |
| GGCAAAGTTAATGCCAAGCA+CGG | 0.563290 | 8.4:-73724188 | None:intergenic |
| TGACTTCCCACTGCTCACTA+GGG | 0.569521 | 8.4:-73724126 | None:intergenic |
| TGATCTTCACACATTTCCCA+TGG | 0.574011 | 8.4:-73725564 | None:intergenic |
| ATCTCTGAAAACTTCCTCAA+CGG | 0.574665 | 8.4:-73721980 | None:intergenic |
| TGGCTTCCCTAGTGAGCAGT+GGG | 0.576162 | 8.4:+73724120 | MS.gene53331:CDS |
| GGAAGTCAATTTACCTGCTG+AGG | 0.576632 | 8.4:+73724141 | MS.gene53331:CDS |
| TGAGGTGGAGGAACTGGACG+AGG | 0.577577 | 8.4:+73725441 | MS.gene53331:CDS |
| ATCCAAGTCCAGCTCGAAAG+CGG | 0.582695 | 8.4:+73724556 | MS.gene53331:CDS |
| TAGGGAAGCCATACAAGCAC+AGG | 0.583243 | 8.4:-73724108 | None:intergenic |
| TTGGCTTCGACAAATCTGAC+AGG | 0.592431 | 8.4:+73724305 | MS.gene53331:CDS |
| TCATCTTTAGGTAACTCCAA+TGG | 0.594683 | 8.4:-73725418 | None:intergenic |
| TGTGAAGATCACCCCTGCTA+GGG | 0.600442 | 8.4:+73725576 | MS.gene53331:CDS |
| GCTGTGACATCTGCGAGAAG+TGG | 0.611408 | 8.4:+73725539 | MS.gene53331:CDS |
| TCTGCGAGAAGTGGTTCCAT+GGG | 0.616851 | 8.4:+73725548 | MS.gene53331:CDS |
| GCAAAGTTAATGCCAAGCAC+GGG | 0.617261 | 8.4:-73724187 | None:intergenic |
| GGAGTTACCTAAAGATGATG+AGG | 0.622708 | 8.4:+73725423 | MS.gene53331:CDS |
| GCTTGGCATTAACTTTGCCA+GGG | 0.626471 | 8.4:+73724192 | MS.gene53331:CDS |
| GTAACTTACCCGGATCACAT+TGG | 0.626802 | 8.4:-73723544 | None:intergenic |
| GTATAATCCACGCACCGTTG+AGG | 0.643429 | 8.4:+73721966 | MS.gene53331:CDS |
| GGCACCAAAGTAGTACGCAA+TGG | 0.648228 | 8.4:-73724278 | None:intergenic |
| ATGGCTTCCCTAGTGAGCAG+TGG | 0.650269 | 8.4:+73724119 | MS.gene53331:CDS |
| GAACATGGAGAGACCTTATG+TGG | 0.650525 | 8.4:+73725475 | MS.gene53331:CDS |
| ACTTGGATTTGCTGCCACTG+TGG | 0.654768 | 8.4:-73724541 | None:intergenic |
| TGCAGCAAAGAAACAAGTCA+AGG | 0.656590 | 8.4:+73724499 | MS.gene53331:CDS |
| GTTACCTAAAGATGATGAGG+TGG | 0.657704 | 8.4:+73725426 | MS.gene53331:CDS |
| GAGGAAGATGAAGATGAACA+TGG | 0.668055 | 8.4:+73725460 | MS.gene53331:CDS |
| GATATGCTCAGCCCTAGCAG+GGG | 0.690376 | 8.4:-73725587 | None:intergenic |
| GAGACCTTATGTGGTGCATG+CGG | 0.712511 | 8.4:+73725484 | MS.gene53331:CDS |
| TCTTCAGTTTCAAACCACAG+TGG | 0.768394 | 8.4:+73724527 | MS.gene53331:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAGAACAAAAAAA+TGG | - | chr8.4:73722073-73722092 | None:intergenic | 10.0% |
| !! | ATTTAAATATTTCAAATCAT+AGG | - | chr8.4:73724739-73724758 | None:intergenic | 10.0% |
| !!! | AAATTTTCAAATTCATTTTT+TGG | + | chr8.4:73722101-73722120 | MS.gene53331:intron | 10.0% |
| !!! | ATATTTAATTTTCAAATTCA+TGG | + | chr8.4:73725176-73725195 | MS.gene53331:intron | 10.0% |
| !!! | ATTTTTCAATTTTACTTAAT+GGG | + | chr8.4:73722377-73722396 | MS.gene53331:intron | 10.0% |
| !!! | TATTTTTCAATTTTACTTAA+TGG | + | chr8.4:73722376-73722395 | MS.gene53331:intron | 10.0% |
| !! | ATACTTGTTTATGAATATTA+GGG | - | chr8.4:73723665-73723684 | None:intergenic | 15.0% |
| !!! | AACAAAAAAATGGTTTTTTA+AGG | - | chr8.4:73722063-73722082 | None:intergenic | 15.0% |
| !!! | ATTGTTGTTTATAATATTAG+CGG | + | chr8.4:73722245-73722264 | MS.gene53331:intron | 15.0% |
| !!! | TATTGATTTTTGTGAAAAAA+TGG | + | chr8.4:73723750-73723769 | MS.gene53331:intron | 15.0% |
| !!! | TTATATATATTTTTTACCAC+CGG | + | chr8.4:73722633-73722652 | MS.gene53331:intron | 15.0% |
| !! | AAGTTCAAAAAAAAATTGCA+AGG | - | chr8.4:73722518-73722537 | None:intergenic | 20.0% |
| !! | ATGAAAAATATTGTTTGCAA+TGG | + | chr8.4:73725009-73725028 | MS.gene53331:intron | 20.0% |
| !! | GATACTTGTTTATGAATATT+AGG | - | chr8.4:73723666-73723685 | None:intergenic | 20.0% |
| !! | TGAATTGTGTAATAATTCAT+GGG | + | chr8.4:73722854-73722873 | MS.gene53331:intron | 20.0% |
| !! | TTATGCAAATATCTAGAAAA+TGG | + | chr8.4:73724761-73724780 | MS.gene53331:intron | 20.0% |
| !! | TTGAATATATATACTGAAGA+AGG | - | chr8.4:73723809-73723828 | None:intergenic | 20.0% |
| !! | TTGAATTGTGTAATAATTCA+TGG | + | chr8.4:73722853-73722872 | MS.gene53331:intron | 20.0% |
| !! | TTTAAATTGAGTATTTGAGA+TGG | + | chr8.4:73722490-73722509 | MS.gene53331:intron | 20.0% |
| !! | TTTCAAATTCATGGTTTAAA+TGG | + | chr8.4:73725185-73725204 | MS.gene53331:intron | 20.0% |
| !!! | AAACTATATTAGTTTCATCA+AGG | + | chr8.4:73723861-73723880 | MS.gene53331:intron | 20.0% |
| !!! | AAGAACTCTTGTTTATATTA+AGG | + | chr8.4:73724656-73724675 | MS.gene53331:intron | 20.0% |
| !!! | AATTTAGCTAGATTTGAAAT+GGG | + | chr8.4:73722740-73722759 | MS.gene53331:intron | 20.0% |
| !!! | GTTTTTCAATTTTACTTGAT+GGG | + | chr8.4:73722170-73722189 | MS.gene53331:intron | 20.0% |
| !!! | TGTTTTTCAATTTTACTTGA+TGG | + | chr8.4:73722169-73722188 | MS.gene53331:intron | 20.0% |
| !!! | TTTCTCATCTAATTTTTGAA+TGG | + | chr8.4:73725354-73725373 | MS.gene53331:intron | 20.0% |
| !!! | TTTTACAAGTGTTTTTAATG+TGG | + | chr8.4:73722776-73722795 | MS.gene53331:intron | 20.0% |
| ! | ATTCAAATTAATCTTACACG+AGG | + | chr8.4:73723823-73723842 | MS.gene53331:intron | 25.0% |
| ! | ATTTGAACTAAAACTACCAT+AGG | + | chr8.4:73722927-73722946 | MS.gene53331:intron | 25.0% |
| ! | CAATTTAGCTAGATTTGAAA+TGG | + | chr8.4:73722739-73722758 | MS.gene53331:intron | 25.0% |
| ! | GGTTAAGTTATCATATGTAT+CGG | + | chr8.4:73724360-73724379 | MS.gene53331:intron | 25.0% |
| ! | GTAACAACTTCAAATATTGA+TGG | - | chr8.4:73724476-73724495 | None:intergenic | 25.0% |
| ! | GTGAAAAGTTCAAAATCAAA+AGG | - | chr8.4:73722713-73722732 | None:intergenic | 25.0% |
| ! | GTTAAATCTGGTATCATATT+TGG | + | chr8.4:73724832-73724851 | MS.gene53331:intron | 25.0% |
| ! | TATATGCTAATAAGCTATGT+TGG | - | chr8.4:73723137-73723156 | None:intergenic | 25.0% |
| ! | TGCTAGTTAGTTAATTATCT+GGG | + | chr8.4:73724705-73724724 | MS.gene53331:intron | 25.0% |
| ! | TTCAAATTAATCTTACACGA+GGG | + | chr8.4:73723824-73723843 | MS.gene53331:intron | 25.0% |
| ! | TTGCTAGTTAGTTAATTATC+TGG | + | chr8.4:73724704-73724723 | MS.gene53331:intron | 25.0% |
| !! | AAAGTTTTCTTTTGAATGCA+TGG | - | chr8.4:73724983-73725002 | None:intergenic | 25.0% |
| !! | AAGTTTTCTTTTGAATGCAT+GGG | - | chr8.4:73724982-73725001 | None:intergenic | 25.0% |
| !! | AGTATCGAAAATGAATTATC+AGG | - | chr8.4:73723373-73723392 | None:intergenic | 25.0% |
| !! | GAAGTTTTCAGAGATTTTAA+GGG | + | chr8.4:73721988-73722007 | MS.gene53331:CDS | 25.0% |
| !! | GATTTTCTTCTTCTTGATAA+TGG | + | chr8.4:73724867-73724886 | MS.gene53331:intron | 25.0% |
| !! | GTTTTTCTTGAGAATTTCAT+TGG | + | chr8.4:73722333-73722352 | MS.gene53331:intron | 25.0% |
| !! | TCAATATTTGAAGTTGTTAC+TGG | + | chr8.4:73724476-73724495 | MS.gene53331:CDS | 25.0% |
| !!! | ACAACTTAACAAGCTTTTTT+TGG | + | chr8.4:73723093-73723112 | MS.gene53331:intron | 25.0% |
| !!! | AGTTTAGTTTGTTGTGAAAT+GGG | + | chr8.4:73722896-73722915 | MS.gene53331:intron | 25.0% |
| !!! | GCAGTTTCTTTTTTATTGAT+TGG | + | chr8.4:73725322-73725341 | MS.gene53331:intron | 25.0% |
| !!! | TAATCAAGTTTTAAACTTGC+TGG | + | chr8.4:73723616-73723635 | MS.gene53331:intron | 25.0% |
| !!! | TCTTTTTTCGGTATTCTATT+TGG | + | chr8.4:73724037-73724056 | MS.gene53331:intron | 25.0% |
| AAAAGTGAATGTAACTTACC+CGG | - | chr8.4:73723557-73723576 | None:intergenic | 30.0% | |
| AAGAAAAATCCTGTAGAGAA+CGG | + | chr8.4:73723980-73723999 | MS.gene53331:intron | 30.0% | |
| AATAAGCTGTTTATCCTAAC+AGG | + | chr8.4:73723212-73723231 | MS.gene53331:intron | 30.0% | |
| AATCTGGTATCATATTTGGA+TGG | + | chr8.4:73724836-73724855 | MS.gene53331:intron | 30.0% | |
| ACATGAAAATTAACCACATC+AGG | - | chr8.4:73722829-73722848 | None:intergenic | 30.0% | |
| ATATACCACCTTCACAAATT+TGG | - | chr8.4:73725233-73725252 | None:intergenic | 30.0% | |
| GCTAGTTAGTTAATTATCTG+GGG | + | chr8.4:73724706-73724725 | MS.gene53331:intron | 30.0% | |
| TGTCAAAAAAAAACTGCCAA+GGG | - | chr8.4:73723238-73723257 | None:intergenic | 30.0% | |
| TTAACCATAAATCTTACCAG+CGG | + | chr8.4:73724339-73724358 | MS.gene53331:intron | 30.0% | |
| TTACTTGATTCTTTCAGAGA+AGG | + | chr8.4:73724081-73724100 | MS.gene53331:intron | 30.0% | |
| TTGAATGAAATCATGTGTCT+CGG | - | chr8.4:73722613-73722632 | None:intergenic | 30.0% | |
| ! | AAAGTACTCCAAATTTGTGA+AGG | + | chr8.4:73725222-73725241 | MS.gene53331:intron | 30.0% |
| ! | ATGATACCAGATTTAACTTC+TGG | - | chr8.4:73724829-73724848 | None:intergenic | 30.0% |
| ! | GGAAGTTTTCAGAGATTTTA+AGG | + | chr8.4:73721987-73722006 | MS.gene53331:CDS | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | + | chr8.4:73723046-73723065 | MS.gene53331:intron | 30.0% |
| !! | GAGTTTAGTTTGTTGTGAAA+TGG | + | chr8.4:73722895-73722914 | MS.gene53331:intron | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | + | chr8.4:73723047-73723066 | MS.gene53331:intron | 30.0% |
| !! | TTGTCATAAGCTGTTTTCAT+AGG | - | chr8.4:73723077-73723096 | None:intergenic | 30.0% |
| !!! | GCAGTTTCTTTTTTATTGCT+TGG | + | chr8.4:73725292-73725311 | MS.gene53331:intron | 30.0% |
| !!! | GTTATTTTTGAAGTCTGATG+TGG | + | chr8.4:73725084-73725103 | MS.gene53331:intron | 30.0% |
| !!! | TTACAGGGCATTTCTTTTTT+CGG | + | chr8.4:73724025-73724044 | MS.gene53331:intron | 30.0% |
| AACAGGTCCTAAAAGATGAT+AGG | - | chr8.4:73723005-73723024 | None:intergenic | 35.0% | |
| AATGTGAAAACATGTGCTCA+AGG | - | chr8.4:73723786-73723805 | None:intergenic | 35.0% | |
| ACACATCATGTATCAATTGC+AGG | - | chr8.4:73723328-73723347 | None:intergenic | 35.0% | |
| ACATATGATAACTTAACCGC+TGG | - | chr8.4:73724358-73724377 | None:intergenic | 35.0% | |
| ATAGGCAACAACTGACTAAA+TGG | - | chr8.4:73722987-73723006 | None:intergenic | 35.0% | |
| ATGAAACAGTGACACATACA+AGG | - | chr8.4:73722680-73722699 | None:intergenic | 35.0% | |
| CAATGAAAGTCATGAGTACA+TGG | - | chr8.4:73724414-73724433 | None:intergenic | 35.0% | |
| CTCTTATTGTTACTGCATGA+TGG | - | chr8.4:73725628-73725647 | None:intergenic | 35.0% | |
| CTGTCAAAAAAAAACTGCCA+AGG | - | chr8.4:73723239-73723258 | None:intergenic | 35.0% | |
| GAACACAACCAAAAAGTTCA+AGG | - | chr8.4:73723425-73723444 | None:intergenic | 35.0% | |
| GATCATTGATCATGTTGAAC+AGG | - | chr8.4:73724451-73724470 | None:intergenic | 35.0% | |
| GTAATAATTCATGGGTTCTC+AGG | + | chr8.4:73722862-73722881 | MS.gene53331:intron | 35.0% | |
| GTAGATAAACCAATCCAAAC+AGG | - | chr8.4:73723022-73723041 | None:intergenic | 35.0% | |
| TAGGCAACAACTGACTAAAT+GGG | - | chr8.4:73722986-73723005 | None:intergenic | 35.0% | |
| TCATCTTTAGGTAACTCCAA+TGG | - | chr8.4:73725421-73725440 | None:intergenic | 35.0% | |
| TGAACTAAAACTACCATAGG+TGG | + | chr8.4:73722930-73722949 | MS.gene53331:intron | 35.0% | |
| TTAACCGCTGGTAAGATTTA+TGG | - | chr8.4:73724346-73724365 | None:intergenic | 35.0% | |
| TTGTGAAAAAATGGCCACTT+TGG | + | chr8.4:73723759-73723778 | MS.gene53331:intron | 35.0% | |
| TTTCATGTGTACTGTTGTTC+TGG | + | chr8.4:73725117-73725136 | MS.gene53331:intron | 35.0% | |
| ! | AACTGAATTTTCAACTGGGT+TGG | + | chr8.4:73722195-73722214 | MS.gene53331:intron | 35.0% |
| ! | AGTTTTTCTTGCACTTGATG+TGG | + | chr8.4:73723283-73723302 | MS.gene53331:intron | 35.0% |
| ! | ATCTCTGAAAACTTCCTCAA+CGG | - | chr8.4:73721983-73722002 | None:intergenic | 35.0% |
| ! | ATTTTTGAATGGTGAAGCAG+CGG | + | chr8.4:73725365-73725384 | MS.gene53331:intron | 35.0% |
| ! | CTCTGAAAGAATCAAGTAAC+AGG | - | chr8.4:73724080-73724099 | None:intergenic | 35.0% |
| ! | GCCATGTTATACTGATTACA+GGG | + | chr8.4:73724010-73724029 | MS.gene53331:intron | 35.0% |
| ! | GGTCAACTGAATTTTCAACT+GGG | + | chr8.4:73722191-73722210 | MS.gene53331:intron | 35.0% |
| ! | GTTGTTGCCTATCATCTTTT+AGG | + | chr8.4:73722995-73723014 | MS.gene53331:intron | 35.0% |
| ! | TGCCATGTTATACTGATTAC+AGG | + | chr8.4:73724009-73724028 | MS.gene53331:intron | 35.0% |
| !! | AGGTTTGTTAGATATACCAG+TGG | - | chr8.4:73722043-73722062 | None:intergenic | 35.0% |
| !! | AGTTACATTCACTTTTCACG+TGG | + | chr8.4:73723561-73723580 | MS.gene53331:intron | 35.0% |
| !! | ATTATGGCACTGATGAATTC+TGG | + | chr8.4:73725512-73725531 | MS.gene53331:CDS | 35.0% |
| !! | CAACGAAAAAAAGTACTGCT+AGG | - | chr8.4:73723921-73723940 | None:intergenic | 35.0% |
| !! | GTGTTTTTAATGTGGCTGTT+TGG | + | chr8.4:73722784-73722803 | MS.gene53331:intron | 35.0% |
| !! | TAGTTTGTTGTGAAATGGGA+AGG | + | chr8.4:73722900-73722919 | MS.gene53331:intron | 35.0% |
| !!! | ATCATCTTTTAGGACCTGTT+TGG | + | chr8.4:73723005-73723024 | MS.gene53331:intron | 35.0% |
| !!! | CAAGTTTTAAACTTGCTGGA+TGG | + | chr8.4:73723620-73723639 | MS.gene53331:intron | 35.0% |
| !!! | GGTCAACTGAATTTTCAAGT+GGG | + | chr8.4:73722398-73722417 | MS.gene53331:intron | 35.0% |
| AAAACTACCATAGGTGGATG+TGG | + | chr8.4:73722936-73722955 | MS.gene53331:intron | 40.0% | |
| AATCCAAAAGACAAATGCCG+TGG | - | chr8.4:73723597-73723616 | None:intergenic | 40.0% | |
| AATTCATGGGTTCTCAGGAA+TGG | + | chr8.4:73722867-73722886 | MS.gene53331:intron | 40.0% | |
| AGATTTGTCGAAGCCAAATC+TGG | - | chr8.4:73724302-73724321 | None:intergenic | 40.0% | |
| ATTATTTACCGCTTTCGAGC+TGG | - | chr8.4:73724567-73724586 | None:intergenic | 40.0% | |
| ATTCATGGGTTCTCAGGAAT+GGG | + | chr8.4:73722868-73722887 | MS.gene53331:intron | 40.0% | |
| CAATAAACCACATCCACCTA+TGG | - | chr8.4:73722946-73722965 | None:intergenic | 40.0% | |
| CATAGGTGGATGTGGTTTAT+TGG | + | chr8.4:73722944-73722963 | MS.gene53331:intron | 40.0% | |
| CATGACTTTCATTGTGATGC+AGG | + | chr8.4:73724420-73724439 | MS.gene53331:intron | 40.0% | |
| CCATCTCCAGAAGTTAAATC+TGG | + | chr8.4:73724820-73724839 | MS.gene53331:intron | 40.0% | |
| CTGATGATTGATACCTGATG+TGG | + | chr8.4:73722813-73722832 | MS.gene53331:intron | 40.0% | |
| CTGGATGGATGAATGCAATA+GGG | + | chr8.4:73723635-73723654 | MS.gene53331:intron | 40.0% | |
| GAGGAAGATGAAGATGAACA+TGG | + | chr8.4:73725460-73725479 | MS.gene53331:CDS | 40.0% | |
| GCCCTGTAATCAGTATAACA+TGG | - | chr8.4:73724014-73724033 | None:intergenic | 40.0% | |
| GGAGTTACCTAAAGATGATG+AGG | + | chr8.4:73725423-73725442 | MS.gene53331:CDS | 40.0% | |
| GTACTCCAAATTTGTGAAGG+TGG | + | chr8.4:73725225-73725244 | MS.gene53331:intron | 40.0% | |
| GTTACCTAAAGATGATGAGG+TGG | + | chr8.4:73725426-73725445 | MS.gene53331:CDS | 40.0% | |
| GTTCTATACCCAATGTGATC+CGG | + | chr8.4:73723535-73723554 | MS.gene53331:CDS | 40.0% | |
| TAACTTACCCGGATCACATT+GGG | - | chr8.4:73723546-73723565 | None:intergenic | 40.0% | |
| TCTTCAGTTTCAAACCACAG+TGG | + | chr8.4:73724527-73724546 | MS.gene53331:CDS | 40.0% | |
| TGACATTTCGTGCTTCATTG+TGG | + | chr8.4:73723399-73723418 | MS.gene53331:intron | 40.0% | |
| TGATCTTCACACATTTCCCA+TGG | - | chr8.4:73725567-73725586 | None:intergenic | 40.0% | |
| TGCAGCAAAGAAACAAGTCA+AGG | + | chr8.4:73724499-73724518 | MS.gene53331:CDS | 40.0% | |
| TGGATGGATGAATGCAATAG+GGG | + | chr8.4:73723636-73723655 | MS.gene53331:intron | 40.0% | |
| TTATGCGTAAGCGCTTATCA+TGG | + | chr8.4:73723178-73723197 | MS.gene53331:intron | 40.0% | |
| TTCTATACCCAATGTGATCC+GGG | + | chr8.4:73723536-73723555 | MS.gene53331:CDS | 40.0% | |
| TTGTTTGCAATGGAAATCCC+TGG | + | chr8.4:73725019-73725038 | MS.gene53331:intron | 40.0% | |
| TTTCTTGCACTTGATGTGGA+GGG | + | chr8.4:73723287-73723306 | MS.gene53331:intron | 40.0% | |
| ! | AGAGAAAGACTGGCTATCTT+TGG | + | chr8.4:73724225-73724244 | MS.gene53331:CDS | 40.0% |
| ! | CCAGATTTAACTTCTGGAGA+TGG | - | chr8.4:73724823-73724842 | None:intergenic | 40.0% |
| ! | CTGATGAACTATTTTCTGCC+TGG | + | chr8.4:73723488-73723507 | MS.gene53331:intron | 40.0% |
| ! | GGGTCAACTGAATTTTCAAC+TGG | + | chr8.4:73722190-73722209 | MS.gene53331:intron | 40.0% |
| ! | TGAAGTCTGATGTGGATTGT+GGG | + | chr8.4:73725092-73725111 | MS.gene53331:intron | 40.0% |
| ! | TGTTGTTCTGGATGTGATAG+CGG | + | chr8.4:73725129-73725148 | MS.gene53331:intron | 40.0% |
| ! | TTCTTTTGAATGCATGGGCA+AGG | - | chr8.4:73724977-73724996 | None:intergenic | 40.0% |
| ! | TTGAAGTCTGATGTGGATTG+TGG | + | chr8.4:73725091-73725110 | MS.gene53331:intron | 40.0% |
| ! | TTGCTGTTCACAGTGATTCA+TGG | + | chr8.4:73724248-73724267 | MS.gene53331:CDS | 40.0% |
| ! | TTTTCTTGCACTTGATGTGG+AGG | + | chr8.4:73723286-73723305 | MS.gene53331:intron | 40.0% |
| ! | TTTTTGAATGGTGAAGCAGC+GGG | + | chr8.4:73725366-73725385 | MS.gene53331:intron | 40.0% |
| !! | CATTGTGGCCTTGAACTTTT+TGG | + | chr8.4:73723414-73723433 | MS.gene53331:intron | 40.0% |
| !! | GGGTCAACTGAATTTTCAAG+TGG | + | chr8.4:73722397-73722416 | MS.gene53331:intron | 40.0% |
| !! | TACTACTTTGGTGCCAGATT+TGG | + | chr8.4:73724286-73724305 | MS.gene53331:CDS | 40.0% |
| !!! | CTTTTAGGACCTGTTTGGAT+TGG | + | chr8.4:73723010-73723029 | MS.gene53331:intron | 40.0% |
| AAGGAGAACCTGTGCTTGTA+TGG | + | chr8.4:73724100-73724119 | MS.gene53331:CDS | 45.0% | |
| ACCTAAAGATGATGAGGTGG+AGG | + | chr8.4:73725429-73725448 | MS.gene53331:CDS | 45.0% | |
| ATCGCCATTGCGTACTACTT+TGG | + | chr8.4:73724274-73724293 | MS.gene53331:CDS | 45.0% | |
| ATGGCATGCAAGAGAAAGAC+TGG | + | chr8.4:73724215-73724234 | MS.gene53331:CDS | 45.0% | |
| CACAATCACAATAGCCTCCA+GGG | - | chr8.4:73725039-73725058 | None:intergenic | 45.0% | |
| GAAATCATGTGTCTCGGACA+CGG | - | chr8.4:73722607-73722626 | None:intergenic | 45.0% | |
| GAACATGGAGAGACCTTATG+TGG | + | chr8.4:73725475-73725494 | MS.gene53331:CDS | 45.0% | |
| GCAAAGTTAATGCCAAGCAC+GGG | - | chr8.4:73724190-73724209 | None:intergenic | 45.0% | |
| GCAAGTAATCCGTTCTCTAC+AGG | - | chr8.4:73723992-73724011 | None:intergenic | 45.0% | |
| GCTGGATGGATGAATGCAAT+AGG | + | chr8.4:73723634-73723653 | MS.gene53331:intron | 45.0% | |
| GCTTGGCATTAACTTTGCCA+GGG | + | chr8.4:73724192-73724211 | MS.gene53331:CDS | 45.0% | |
| GGAAGTCAATTTACCTGCTG+AGG | + | chr8.4:73724141-73724160 | MS.gene53331:CDS | 45.0% | |
| GGCAAAGTTAATGCCAAGCA+CGG | - | chr8.4:73724191-73724210 | None:intergenic | 45.0% | |
| GGTTAAGCAGACAAAGCCAT+TGG | + | chr8.4:73725402-73725421 | MS.gene53331:CDS | 45.0% | |
| GTAACTTACCCGGATCACAT+TGG | - | chr8.4:73723547-73723566 | None:intergenic | 45.0% | |
| TCACAATCACAATAGCCTCC+AGG | - | chr8.4:73725040-73725059 | None:intergenic | 45.0% | |
| TCCTCCACCTCATCATCTTT+AGG | - | chr8.4:73725433-73725452 | None:intergenic | 45.0% | |
| TGCTTGGCATTAACTTTGCC+AGG | + | chr8.4:73724191-73724210 | MS.gene53331:CDS | 45.0% | |
| TGTTTATCCTAACAGGCCCT+TGG | + | chr8.4:73723219-73723238 | MS.gene53331:intron | 45.0% | |
| TTGGCTTCGACAAATCTGAC+AGG | + | chr8.4:73724305-73724324 | MS.gene53331:CDS | 45.0% | |
| TTTGCAATGGAAATCCCTGG+AGG | + | chr8.4:73725022-73725041 | MS.gene53331:intron | 45.0% | |
| AAAACTGCCAAGGGCCTGTT+AGG | - | chr8.4:73723229-73723248 | None:intergenic | 50.0% | |
| AAAACTTCCTCAACGGTGCG+TGG | - | chr8.4:73721976-73721995 | None:intergenic | 50.0% | |
| ACATCTGCAACAGCACAACC+AGG | - | chr8.4:73723509-73723528 | None:intergenic | 50.0% | |
| ACCAGAGACAACACGTACAC+CGG | - | chr8.4:73722655-73722674 | None:intergenic | 50.0% | |
| AGATGATGAGGTGGAGGAAC+TGG | + | chr8.4:73725435-73725454 | MS.gene53331:CDS | 50.0% | |
| ATCCAAGTCCAGCTCGAAAG+CGG | + | chr8.4:73724556-73724575 | MS.gene53331:CDS | 50.0% | |
| ATCTGCGAGAAGTGGTTCCA+TGG | + | chr8.4:73725547-73725566 | MS.gene53331:CDS | 50.0% | |
| CATGTGCTCAAGGACCAAAG+TGG | - | chr8.4:73723776-73723795 | None:intergenic | 50.0% | |
| CTCATCAAAGCTCTCACCAC+TGG | + | chr8.4:73722024-73722043 | MS.gene53331:CDS | 50.0% | |
| GAGACCTTATGTGGTGCATG+CGG | + | chr8.4:73725484-73725503 | MS.gene53331:CDS | 50.0% | |
| GGCACCAAAGTAGTACGCAA+TGG | - | chr8.4:73724281-73724300 | None:intergenic | 50.0% | |
| GGCATTAACTTTGCCAGGGA+TGG | + | chr8.4:73724196-73724215 | MS.gene53331:CDS | 50.0% | |
| GTATAATCCACGCACCGTTG+AGG | + | chr8.4:73721966-73721985 | MS.gene53331:CDS | 50.0% | |
| GTCTGCTTAACCTGAGGTTC+TGG | - | chr8.4:73725394-73725413 | None:intergenic | 50.0% | |
| TAGGGAAGCCATACAAGCAC+AGG | - | chr8.4:73724111-73724130 | None:intergenic | 50.0% | |
| TCTGCGAGAAGTGGTTCCAT+GGG | + | chr8.4:73725548-73725567 | MS.gene53331:CDS | 50.0% | |
| TGACTTCCCACTGCTCACTA+GGG | - | chr8.4:73724129-73724148 | None:intergenic | 50.0% | |
| TGATATGCTCAGCCCTAGCA+GGG | - | chr8.4:73725591-73725610 | None:intergenic | 50.0% | |
| TGTGAAGATCACCCCTGCTA+GGG | + | chr8.4:73725576-73725595 | MS.gene53331:CDS | 50.0% | |
| TTGACTTCCCACTGCTCACT+AGG | - | chr8.4:73724130-73724149 | None:intergenic | 50.0% | |
| TTGATATGCTCAGCCCTAGC+AGG | - | chr8.4:73725592-73725611 | None:intergenic | 50.0% | |
| TTTCTCTTGCATGCCATCCC+TGG | - | chr8.4:73724212-73724231 | None:intergenic | 50.0% | |
| ! | GGCTTTGTCTGCTTAACCTG+AGG | - | chr8.4:73725400-73725419 | None:intergenic | 50.0% |
| ! | GTGCCACGGCATTTGTCTTT+TGG | + | chr8.4:73723591-73723610 | MS.gene53331:intron | 50.0% |
| !! | ACTTGGATTTGCTGCCACTG+TGG | - | chr8.4:73724544-73724563 | None:intergenic | 50.0% |
| !! | GATTTTAAGGGTCGTCGTGC+TGG | + | chr8.4:73722000-73722019 | MS.gene53331:CDS | 50.0% |
| !!! | CACGTGGTAGTTTTGTGCCA+CGG | + | chr8.4:73723577-73723596 | MS.gene53331:intron | 50.0% |
| ACCGGTGTACGTGTTGTCTC+TGG | + | chr8.4:73722651-73722670 | MS.gene53331:intron | 55.0% | |
| AGAGACAACACGTACACCGG+TGG | - | chr8.4:73722652-73722671 | None:intergenic | 55.0% | |
| ATGGCTTCCCTAGTGAGCAG+TGG | + | chr8.4:73724119-73724138 | MS.gene53331:CDS | 55.0% | |
| CTCACCGCATGCACCACATA+AGG | - | chr8.4:73725491-73725510 | None:intergenic | 55.0% | |
| GATATGCTCAGCCCTAGCAG+GGG | - | chr8.4:73725590-73725609 | None:intergenic | 55.0% | |
| GCTGTGACATCTGCGAGAAG+TGG | + | chr8.4:73725539-73725558 | MS.gene53331:CDS | 55.0% | |
| GGTGCATGCGGTGAGCATTA+TGG | + | chr8.4:73725496-73725515 | MS.gene53331:CDS | 55.0% | |
| GTGTGAAGATCACCCCTGCT+AGG | + | chr8.4:73725575-73725594 | MS.gene53331:CDS | 55.0% | |
| GTTAATGCCAAGCACGGGCT+CGG | - | chr8.4:73724185-73724204 | None:intergenic | 55.0% | |
| TACCGCTTTCGAGCTGGACT+TGG | - | chr8.4:73724561-73724580 | None:intergenic | 55.0% | |
| TGGCTTCCCTAGTGAGCAGT+GGG | + | chr8.4:73724120-73724139 | MS.gene53331:CDS | 55.0% | |
| TTAATGCCAAGCACGGGCTC+GGG | - | chr8.4:73724184-73724203 | None:intergenic | 55.0% | |
| TCTCGGACACGGAGACACGT+CGG | - | chr8.4:73722596-73722615 | None:intergenic | 60.0% | |
| TCTGGCGGAACTTCCTCAGC+AGG | - | chr8.4:73724157-73724176 | None:intergenic | 60.0% | |
| TGAGGTGGAGGAACTGGACG+AGG | + | chr8.4:73725441-73725460 | MS.gene53331:CDS | 60.0% | |
| CACGGAGACACGTCGGACAC+AGG | - | chr8.4:73722589-73722608 | None:intergenic | 65.0% | |
| AGCACGGGCTCGGGAAGCTC+TGG | - | chr8.4:73724175-73724194 | None:intergenic | 70.0% | |
| GAGCTTCCCGAGCCCGTGCT+TGG | + | chr8.4:73724175-73724194 | MS.gene53331:CDS | 70.0% | |
| ! | ACGGGCTCGGGAAGCTCTGG+CGG | - | chr8.4:73724172-73724191 | None:intergenic | 70.0% |
| ! | GCAGCGGGCTCCAGAACCTC+AGG | + | chr8.4:73725381-73725400 | MS.gene53331:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 73721949 | 73725660 | 73721949 | ID=MS.gene53331 |
| chr8.4 | mRNA | 73721949 | 73725660 | 73721949 | ID=MS.gene53331.t1;Parent=MS.gene53331 |
| chr8.4 | exon | 73721949 | 73722045 | 73721949 | ID=MS.gene53331.t1.exon1;Parent=MS.gene53331.t1 |
| chr8.4 | CDS | 73721949 | 73722045 | 73721949 | ID=cds.MS.gene53331.t1;Parent=MS.gene53331.t1 |
| chr8.4 | exon | 73723525 | 73723557 | 73723525 | ID=MS.gene53331.t1.exon2;Parent=MS.gene53331.t1 |
| chr8.4 | CDS | 73723525 | 73723557 | 73723525 | ID=cds.MS.gene53331.t1;Parent=MS.gene53331.t1 |
| chr8.4 | exon | 73724098 | 73724326 | 73724098 | ID=MS.gene53331.t1.exon3;Parent=MS.gene53331.t1 |
| chr8.4 | CDS | 73724098 | 73724326 | 73724098 | ID=cds.MS.gene53331.t1;Parent=MS.gene53331.t1 |
| chr8.4 | exon | 73724442 | 73724577 | 73724442 | ID=MS.gene53331.t1.exon4;Parent=MS.gene53331.t1 |
| chr8.4 | CDS | 73724442 | 73724577 | 73724442 | ID=cds.MS.gene53331.t1;Parent=MS.gene53331.t1 |
| chr8.4 | exon | 73725385 | 73725660 | 73725385 | ID=MS.gene53331.t1.exon5;Parent=MS.gene53331.t1 |
| chr8.4 | CDS | 73725385 | 73725660 | 73725385 | ID=cds.MS.gene53331.t1;Parent=MS.gene53331.t1 |
| Gene Sequence |
| Protein sequence |
