Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53399.t1 | XP_013446647.1 | 94.1 | 321 | 14 | 2 | 1 | 319 | 111 | 428 | 3.80E-167 | 597.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53399.t1 | Q700D9 | 65.1 | 63 | 22 | 0 | 1 | 63 | 23 | 85 | 2.5e-18 | 94.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53399.t1 | G7LJE5 | 94.1 | 321 | 14 | 2 | 1 | 319 | 109 | 426 | 2.8e-167 | 597.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene53399.t1 | TF | GARP-G2-like |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53399.t1 | MTR_8g086410 | 96.573 | 321 | 6 | 2 | 1 | 319 | 109 | 426 | 0.0 | 637 |
MS.gene53399.t1 | MTR_8g086410 | 96.573 | 321 | 6 | 2 | 1 | 319 | 111 | 428 | 0.0 | 637 |
MS.gene53399.t1 | MTR_8g086410 | 94.512 | 328 | 6 | 3 | 1 | 319 | 111 | 435 | 0.0 | 630 |
MS.gene53399.t1 | MTR_2g016220 | 48.387 | 341 | 99 | 10 | 1 | 319 | 89 | 374 | 1.47e-85 | 262 |
MS.gene53399.t1 | MTR_2g016220 | 47.826 | 345 | 99 | 11 | 1 | 319 | 89 | 378 | 2.58e-83 | 256 |
MS.gene53399.t1 | MTR_2g016220 | 47.605 | 334 | 98 | 10 | 1 | 312 | 89 | 367 | 1.10e-81 | 252 |
MS.gene53399.t1 | MTR_2g084230 | 46.392 | 194 | 76 | 7 | 1 | 194 | 97 | 262 | 1.55e-37 | 136 |
MS.gene53399.t1 | MTR_2g084230 | 46.392 | 194 | 76 | 7 | 1 | 194 | 97 | 262 | 3.44e-37 | 137 |
MS.gene53399.t1 | MTR_7g069660 | 78.571 | 70 | 14 | 1 | 1 | 70 | 71 | 139 | 2.13e-31 | 120 |
MS.gene53399.t1 | MTR_2g023580 | 55.056 | 89 | 36 | 2 | 1 | 89 | 55 | 139 | 4.47e-26 | 103 |
MS.gene53399.t1 | MTR_0223s0040 | 66.667 | 63 | 21 | 0 | 1 | 63 | 18 | 80 | 4.56e-24 | 99.8 |
MS.gene53399.t1 | MTR_1g112370 | 68.421 | 57 | 18 | 0 | 1 | 57 | 22 | 78 | 2.90e-22 | 95.5 |
MS.gene53399.t1 | MTR_6g071625 | 69.643 | 56 | 17 | 0 | 2 | 57 | 203 | 258 | 7.64e-20 | 89.4 |
MS.gene53399.t1 | MTR_1g021520 | 66.129 | 62 | 20 | 1 | 2 | 62 | 127 | 188 | 1.35e-19 | 87.4 |
MS.gene53399.t1 | MTR_3g450310 | 57.353 | 68 | 24 | 2 | 2 | 68 | 20 | 83 | 1.42e-19 | 85.9 |
MS.gene53399.t1 | MTR_7g115530 | 53.247 | 77 | 32 | 1 | 2 | 78 | 219 | 291 | 3.35e-19 | 86.7 |
MS.gene53399.t1 | MTR_8g066310 | 64.407 | 59 | 21 | 0 | 2 | 60 | 174 | 232 | 4.13e-19 | 87.0 |
MS.gene53399.t1 | MTR_5g029470 | 66.129 | 62 | 20 | 1 | 2 | 62 | 220 | 281 | 4.16e-19 | 87.4 |
MS.gene53399.t1 | MTR_7g098250 | 66.071 | 56 | 19 | 0 | 2 | 57 | 263 | 318 | 4.39e-19 | 87.8 |
MS.gene53399.t1 | MTR_7g115530 | 53.247 | 77 | 32 | 1 | 2 | 78 | 219 | 291 | 5.96e-19 | 86.3 |
MS.gene53399.t1 | MTR_3g064840 | 69.643 | 56 | 17 | 0 | 2 | 57 | 275 | 330 | 7.91e-19 | 87.0 |
MS.gene53399.t1 | MTR_7g115530 | 53.247 | 77 | 32 | 1 | 2 | 78 | 219 | 291 | 9.03e-19 | 86.7 |
MS.gene53399.t1 | MTR_1g080330 | 64.286 | 56 | 20 | 0 | 2 | 57 | 176 | 231 | 1.26e-18 | 84.7 |
MS.gene53399.t1 | MTR_7g115530 | 64.286 | 56 | 20 | 0 | 2 | 57 | 219 | 274 | 1.56e-18 | 85.5 |
MS.gene53399.t1 | MTR_1g080330 | 64.286 | 56 | 20 | 0 | 2 | 57 | 176 | 231 | 1.74e-18 | 85.5 |
MS.gene53399.t1 | MTR_7g093030 | 58.929 | 56 | 23 | 0 | 3 | 58 | 214 | 269 | 2.74e-17 | 80.9 |
MS.gene53399.t1 | MTR_7g115530 | 62.500 | 56 | 21 | 0 | 2 | 57 | 219 | 274 | 4.40e-17 | 80.1 |
MS.gene53399.t1 | MTR_7g115530 | 65.385 | 52 | 18 | 0 | 2 | 53 | 219 | 270 | 5.38e-17 | 80.1 |
MS.gene53399.t1 | MTR_7g093030 | 58.929 | 56 | 23 | 0 | 3 | 58 | 214 | 269 | 5.77e-17 | 81.3 |
MS.gene53399.t1 | MTR_6g032990 | 62.264 | 53 | 20 | 0 | 2 | 54 | 43 | 95 | 1.24e-16 | 80.1 |
MS.gene53399.t1 | MTR_1g053835 | 61.818 | 55 | 21 | 0 | 3 | 57 | 260 | 314 | 3.18e-16 | 79.3 |
MS.gene53399.t1 | MTR_2g086450 | 58.929 | 56 | 23 | 0 | 2 | 57 | 46 | 101 | 3.59e-16 | 79.0 |
MS.gene53399.t1 | MTR_5g027440 | 62.264 | 53 | 20 | 0 | 2 | 54 | 26 | 78 | 3.89e-16 | 77.4 |
MS.gene53399.t1 | MTR_7g088070 | 63.636 | 55 | 20 | 0 | 3 | 57 | 52 | 106 | 7.33e-16 | 76.6 |
MS.gene53399.t1 | MTR_7g088070 | 63.636 | 55 | 20 | 0 | 3 | 57 | 52 | 106 | 7.86e-16 | 76.6 |
MS.gene53399.t1 | MTR_1g053830 | 56.364 | 55 | 24 | 0 | 3 | 57 | 20 | 74 | 9.93e-16 | 72.0 |
MS.gene53399.t1 | MTR_1g090670 | 56.452 | 62 | 25 | 1 | 2 | 63 | 45 | 104 | 1.48e-15 | 76.3 |
MS.gene53399.t1 | MTR_2g027800 | 58.929 | 56 | 23 | 0 | 2 | 57 | 40 | 95 | 2.07e-15 | 75.9 |
MS.gene53399.t1 | MTR_2g027800 | 60.377 | 53 | 21 | 0 | 2 | 54 | 40 | 92 | 3.27e-15 | 75.1 |
MS.gene53399.t1 | MTR_2g027860 | 63.636 | 55 | 20 | 0 | 3 | 57 | 51 | 105 | 3.29e-15 | 75.5 |
MS.gene53399.t1 | MTR_5g041350 | 39.175 | 97 | 48 | 3 | 2 | 87 | 16 | 112 | 3.93e-15 | 75.5 |
MS.gene53399.t1 | MTR_6g444980 | 53.571 | 56 | 26 | 0 | 2 | 57 | 36 | 91 | 4.16e-14 | 72.8 |
MS.gene53399.t1 | MTR_6g444980 | 53.571 | 56 | 26 | 0 | 2 | 57 | 36 | 91 | 4.72e-14 | 72.4 |
MS.gene53399.t1 | MTR_1g053800 | 58.491 | 53 | 22 | 0 | 3 | 55 | 179 | 231 | 1.29e-13 | 70.9 |
MS.gene53399.t1 | MTR_7g068600 | 59.322 | 59 | 21 | 1 | 3 | 58 | 15 | 73 | 2.20e-13 | 68.9 |
MS.gene53399.t1 | MTR_4g081710 | 51.786 | 56 | 27 | 0 | 2 | 57 | 18 | 73 | 2.25e-13 | 70.1 |
MS.gene53399.t1 | MTR_7g093010 | 60.377 | 53 | 21 | 0 | 3 | 55 | 215 | 267 | 1.19e-12 | 68.2 |
MS.gene53399.t1 | MTR_4g021790 | 51.923 | 52 | 24 | 1 | 3 | 54 | 170 | 220 | 5.67e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53399.t1 | AT2G38300 | 77.273 | 66 | 15 | 0 | 1 | 66 | 54 | 119 | 3.08e-30 | 117 |
MS.gene53399.t1 | AT2G42660 | 81.356 | 59 | 11 | 0 | 1 | 59 | 50 | 108 | 2.45e-27 | 107 |
MS.gene53399.t1 | AT2G40260 | 84.746 | 59 | 9 | 0 | 2 | 60 | 83 | 141 | 6.04e-27 | 109 |
MS.gene53399.t1 | AT4G04605 | 60.759 | 79 | 31 | 0 | 1 | 79 | 14 | 92 | 9.35e-27 | 105 |
MS.gene53399.t1 | AT2G02060 | 76.364 | 55 | 13 | 0 | 1 | 55 | 29 | 83 | 7.26e-24 | 98.6 |
MS.gene53399.t1 | AT2G02060 | 76.364 | 55 | 13 | 0 | 1 | 55 | 29 | 83 | 7.26e-24 | 98.6 |
MS.gene53399.t1 | AT1G14600 | 65.079 | 63 | 22 | 0 | 1 | 63 | 23 | 85 | 2.74e-23 | 97.1 |
MS.gene53399.t1 | AT5G42630 | 65.574 | 61 | 21 | 0 | 2 | 62 | 106 | 166 | 1.22e-20 | 89.0 |
MS.gene53399.t1 | AT5G42630 | 65.574 | 61 | 21 | 0 | 2 | 62 | 106 | 166 | 2.52e-20 | 89.4 |
MS.gene53399.t1 | AT1G32240 | 66.129 | 62 | 20 | 1 | 2 | 62 | 214 | 275 | 3.57e-19 | 87.4 |
MS.gene53399.t1 | AT4G04580 | 60.000 | 60 | 24 | 0 | 2 | 61 | 15 | 74 | 4.01e-19 | 83.6 |
MS.gene53399.t1 | AT5G16560 | 54.118 | 85 | 38 | 1 | 2 | 86 | 220 | 303 | 4.78e-19 | 87.4 |
MS.gene53399.t1 | AT1G32240 | 66.129 | 62 | 20 | 1 | 2 | 62 | 214 | 275 | 5.12e-19 | 87.0 |
MS.gene53399.t1 | AT4G17695 | 66.102 | 59 | 20 | 0 | 2 | 60 | 165 | 223 | 1.15e-18 | 85.5 |
MS.gene53399.t1 | AT4G04555 | 57.377 | 61 | 26 | 0 | 1 | 61 | 14 | 74 | 1.30e-17 | 77.4 |
MS.gene53399.t1 | AT4G28610 | 63.636 | 55 | 20 | 0 | 3 | 57 | 227 | 281 | 1.76e-17 | 82.8 |
MS.gene53399.t1 | AT3G04450 | 60.000 | 55 | 22 | 0 | 3 | 57 | 240 | 294 | 3.27e-17 | 81.3 |
MS.gene53399.t1 | AT5G29000 | 63.636 | 55 | 20 | 0 | 3 | 57 | 233 | 287 | 3.33e-17 | 81.3 |
MS.gene53399.t1 | AT5G29000 | 63.636 | 55 | 20 | 0 | 3 | 57 | 190 | 244 | 4.07e-17 | 81.6 |
MS.gene53399.t1 | AT5G29000 | 63.636 | 55 | 20 | 0 | 3 | 57 | 190 | 244 | 4.07e-17 | 81.6 |
MS.gene53399.t1 | AT3G04450 | 60.000 | 55 | 22 | 0 | 3 | 57 | 200 | 254 | 5.23e-17 | 81.3 |
MS.gene53399.t1 | AT3G04450 | 60.000 | 55 | 22 | 0 | 3 | 57 | 200 | 254 | 5.23e-17 | 81.3 |
MS.gene53399.t1 | AT3G04450 | 60.000 | 55 | 22 | 0 | 3 | 57 | 240 | 294 | 5.25e-17 | 81.6 |
MS.gene53399.t1 | AT5G29000 | 63.636 | 55 | 20 | 0 | 3 | 57 | 233 | 287 | 5.47e-17 | 81.3 |
MS.gene53399.t1 | AT5G45580 | 62.264 | 53 | 20 | 0 | 2 | 54 | 8 | 60 | 6.36e-17 | 79.7 |
MS.gene53399.t1 | AT5G45580 | 62.264 | 53 | 20 | 0 | 2 | 54 | 24 | 76 | 8.49e-17 | 79.3 |
MS.gene53399.t1 | AT3G13040 | 65.455 | 55 | 19 | 0 | 3 | 57 | 243 | 297 | 2.33e-16 | 79.7 |
MS.gene53399.t1 | AT3G13040 | 65.455 | 55 | 19 | 0 | 3 | 57 | 243 | 297 | 2.33e-16 | 79.7 |
MS.gene53399.t1 | AT3G13040 | 65.455 | 55 | 19 | 0 | 3 | 57 | 243 | 297 | 2.33e-16 | 79.7 |
MS.gene53399.t1 | AT3G04030 | 55.357 | 56 | 25 | 0 | 2 | 57 | 46 | 101 | 6.84e-16 | 78.2 |
MS.gene53399.t1 | AT3G04030 | 55.357 | 56 | 25 | 0 | 2 | 57 | 46 | 101 | 8.11e-16 | 77.8 |
MS.gene53399.t1 | AT5G18240 | 55.357 | 56 | 25 | 0 | 2 | 57 | 46 | 101 | 1.24e-15 | 77.4 |
MS.gene53399.t1 | AT5G18240 | 55.357 | 56 | 25 | 0 | 2 | 57 | 46 | 101 | 1.24e-15 | 77.4 |
MS.gene53399.t1 | AT5G18240 | 55.357 | 56 | 25 | 0 | 2 | 57 | 46 | 101 | 1.48e-15 | 77.0 |
MS.gene53399.t1 | AT5G18240 | 55.357 | 56 | 25 | 0 | 2 | 57 | 46 | 101 | 1.48e-15 | 77.0 |
MS.gene53399.t1 | AT5G18240 | 55.357 | 56 | 25 | 0 | 2 | 57 | 46 | 101 | 1.48e-15 | 77.0 |
MS.gene53399.t1 | AT2G01060 | 63.636 | 55 | 20 | 0 | 3 | 57 | 17 | 71 | 1.60e-15 | 75.9 |
MS.gene53399.t1 | AT2G20400 | 54.286 | 70 | 32 | 0 | 3 | 72 | 233 | 302 | 2.71e-15 | 76.3 |
MS.gene53399.t1 | AT2G20400 | 55.405 | 74 | 26 | 2 | 3 | 72 | 233 | 303 | 3.77e-15 | 75.9 |
MS.gene53399.t1 | AT3G12730 | 55.357 | 56 | 25 | 0 | 2 | 57 | 24 | 79 | 4.00e-15 | 73.9 |
MS.gene53399.t1 | AT5G06800 | 58.182 | 55 | 23 | 0 | 3 | 57 | 194 | 248 | 4.05e-15 | 74.7 |
MS.gene53399.t1 | AT1G69580 | 53.226 | 62 | 26 | 1 | 2 | 60 | 35 | 96 | 1.21e-14 | 73.9 |
MS.gene53399.t1 | AT1G69580 | 53.226 | 62 | 26 | 1 | 2 | 60 | 35 | 96 | 1.27e-14 | 73.9 |
MS.gene53399.t1 | AT5G06800 | 58.182 | 55 | 23 | 0 | 3 | 57 | 194 | 248 | 1.34e-14 | 74.3 |
MS.gene53399.t1 | AT5G06800 | 58.182 | 55 | 23 | 0 | 3 | 57 | 194 | 248 | 1.34e-14 | 74.3 |
MS.gene53399.t1 | AT2G06020 | 53.333 | 60 | 28 | 0 | 3 | 62 | 88 | 147 | 1.64e-14 | 73.2 |
MS.gene53399.t1 | AT4G13640 | 54.717 | 53 | 24 | 0 | 2 | 54 | 38 | 90 | 1.73e-14 | 73.2 |
MS.gene53399.t1 | AT4G13640 | 54.717 | 53 | 24 | 0 | 2 | 54 | 38 | 90 | 1.75e-14 | 73.2 |
MS.gene53399.t1 | AT3G24120 | 54.717 | 53 | 24 | 0 | 2 | 54 | 42 | 94 | 2.20e-14 | 72.8 |
MS.gene53399.t1 | AT3G24120 | 54.717 | 53 | 24 | 0 | 2 | 54 | 42 | 94 | 2.27e-14 | 72.8 |
MS.gene53399.t1 | AT1G79430 | 53.571 | 56 | 26 | 0 | 2 | 57 | 35 | 90 | 3.16e-14 | 72.8 |
MS.gene53399.t1 | AT3G04030 | 53.571 | 56 | 25 | 1 | 2 | 57 | 46 | 100 | 2.26e-13 | 70.5 |
MS.gene53399.t1 | AT3G62670 | 52.632 | 57 | 23 | 1 | 2 | 54 | 212 | 268 | 9.83e-12 | 65.9 |
Find 74 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATCTTCCTTGTGTATTTA+TGG | 0.141395 | 4.1:+13778315 | None:intergenic |
CATCAGTTGAAGCACCAATT+TGG | 0.203737 | 4.1:+13780182 | None:intergenic |
GATGATTTAAGTACCATTCT+TGG | 0.272460 | 4.1:+13778389 | None:intergenic |
CTTAAACTCAGTTGCAAATC+AGG | 0.297702 | 4.1:+13777692 | None:intergenic |
ATGATTGTTCATGATATCTA+AGG | 0.331312 | 4.1:+13778189 | None:intergenic |
ATCAGTTGAAGCACCAATTT+GGG | 0.338016 | 4.1:+13780183 | None:intergenic |
TATAGTTTACCTTGAATTGA+TGG | 0.341831 | 4.1:+13778489 | None:intergenic |
GAACCAGCAGCTTCAAGTTA+AGG | 0.347972 | 4.1:-13778281 | MS.gene53399:CDS |
GAGTTTCGTGTCGATTTCTT+TGG | 0.349363 | 4.1:+13777622 | None:intergenic |
TGTGTATTTATGGCTGTTGA+TGG | 0.356390 | 4.1:+13778325 | None:intergenic |
TGCAGGAGCAACACCCAAAT+TGG | 0.368712 | 4.1:-13780196 | MS.gene53399:intron |
CACAGATCAACCCATGAATT+AGG | 0.371135 | 4.1:-13778676 | MS.gene53399:CDS |
TCATGAACAATCATCCATAT+TGG | 0.374740 | 4.1:-13778180 | MS.gene53399:CDS |
AAGCTGCTGGTTCAAAGTTA+TGG | 0.381198 | 4.1:+13778291 | None:intergenic |
AGAAATTGGCTTGGTCTCAT+AGG | 0.398094 | 4.1:+13778232 | None:intergenic |
GGTACTTAAATCATCAATCT+TGG | 0.408196 | 4.1:-13778381 | MS.gene53399:CDS |
TCATGTCAAGAGTCACTTGC+AGG | 0.410009 | 4.1:-13780136 | MS.gene53399:intron |
GTGATAAGGATGAGGGATGC+AGG | 0.412034 | 4.1:+13778533 | None:intergenic |
TATATATATACTTACTCTCT+TGG | 0.424725 | 4.1:+13780334 | None:intergenic |
TTCTCTTCAAGAAATTGGCT+TGG | 0.425569 | 4.1:+13778223 | None:intergenic |
AGACCCGCTGAGGTGAGCTT+TGG | 0.428693 | 4.1:-13778103 | MS.gene53399:CDS |
ATGTTACCTTAATCCGAAAC+GGG | 0.432975 | 4.1:+13777996 | None:intergenic |
GAGAAATGGAACCTAATTCA+TGG | 0.443905 | 4.1:+13778665 | None:intergenic |
AGCAAGAAACTTGACGAGGC+TGG | 0.448557 | 4.1:-13779445 | MS.gene53399:CDS |
TTTCCAAAGCTCACCTCAGC+GGG | 0.450601 | 4.1:+13778100 | None:intergenic |
ATAAAAGAGTGATGAAGATC+AGG | 0.470459 | 4.1:+13780381 | None:intergenic |
ATGGGCTACATGGTGAGAAA+TGG | 0.471248 | 4.1:+13778651 | None:intergenic |
CAACATTTCAAGATGGCAAA+TGG | 0.480821 | 4.1:-13778610 | MS.gene53399:CDS |
CCTCGTCAAGTTTCTTGCTC+CGG | 0.482077 | 4.1:+13779449 | None:intergenic |
TATCCTTAACTTGAAGCTGC+TGG | 0.484791 | 4.1:+13778278 | None:intergenic |
ATTCAAAGCCCATCAATTCA+AGG | 0.485522 | 4.1:-13778498 | MS.gene53399:intron |
ATAGTTTACCTTGAATTGAT+GGG | 0.489818 | 4.1:+13778490 | None:intergenic |
GATCAAAGATGCCTAGGCTT+AGG | 0.490445 | 4.1:-13780410 | None:intergenic |
ATGCATGCTGTTGAAAGGCT+TGG | 0.493618 | 4.1:-13780360 | MS.gene53399:CDS |
AATTCATTGCTCATGTAGCT+TGG | 0.505208 | 4.1:+13778355 | None:intergenic |
AATTTCTTGAAGAGAAAAGA+TGG | 0.506639 | 4.1:-13778216 | MS.gene53399:CDS |
TCATGGGTTGATCTGTGTGT+TGG | 0.507129 | 4.1:+13778682 | None:intergenic |
AATGTTACCTTAATCCGAAA+CGG | 0.510920 | 4.1:+13777995 | None:intergenic |
CAAAGATGCCTAGGCTTAGG+TGG | 0.512420 | 4.1:-13780407 | None:intergenic |
CAAACAAACGGCAACAATGA+TGG | 0.520591 | 4.1:-13777668 | MS.gene53399:CDS |
TTGAACTATTAAAATAGTTG+TGG | 0.532058 | 4.1:+13778035 | None:intergenic |
TTGGAAACAACACAAGAAGC+AGG | 0.535242 | 4.1:-13778084 | MS.gene53399:CDS |
AACAATGATGGCAAGAGTGA+TGG | 0.553546 | 4.1:-13777656 | MS.gene53399:CDS |
ATGTTAGATCAAAGATGCCT+AGG | 0.555843 | 4.1:-13780416 | None:intergenic |
ATGTGAATGTGATAAGGATG+AGG | 0.556397 | 4.1:+13778525 | None:intergenic |
ATGTGAATGTGAATGTGATA+AGG | 0.557968 | 4.1:+13778519 | None:intergenic |
CATGCTGTTGAAAGGCTTGG+AGG | 0.559982 | 4.1:-13780357 | MS.gene53399:CDS |
GATGAGGTATCATGGACTGA+TGG | 0.560341 | 4.1:+13778632 | None:intergenic |
GAAATGTTGATGAGGTATCA+TGG | 0.573003 | 4.1:+13778624 | None:intergenic |
TGTGGAAATTATAACTGTGC+TGG | 0.573367 | 4.1:+13778560 | None:intergenic |
ATTGCTGAAAGACAAACAAT+GGG | 0.582280 | 4.1:-13777717 | MS.gene53399:CDS |
CATTGCTGAAAGACAAACAA+TGG | 0.583238 | 4.1:-13777718 | MS.gene53399:CDS |
AGAAATGGAACCTAATTCAT+GGG | 0.583302 | 4.1:+13778666 | None:intergenic |
CTGAGTTTAAGTCAAACAAA+CGG | 0.584680 | 4.1:-13777680 | MS.gene53399:CDS |
TCATGGACTGATGGGCTACA+TGG | 0.586690 | 4.1:+13778641 | None:intergenic |
TCAGGAGTCCACCTAAGCCT+AGG | 0.589432 | 4.1:+13780399 | None:intergenic |
ACCTCATCAACATTTCAAGA+TGG | 0.592000 | 4.1:-13778617 | MS.gene53399:CDS |
ATGAGGGATGCAGGAGACTG+TGG | 0.594666 | 4.1:+13778542 | None:intergenic |
CATTTCAAGATGGCAAATGG+TGG | 0.597539 | 4.1:-13778607 | MS.gene53399:CDS |
TGTGAATGTGATAAGGATGA+GGG | 0.599304 | 4.1:+13778526 | None:intergenic |
AAACTTGACGAGGCTGGACA+AGG | 0.608837 | 4.1:-13779439 | MS.gene53399:intron |
ATGAGGTATCATGGACTGAT+GGG | 0.611244 | 4.1:+13778633 | None:intergenic |
TGATTGTTCATGATATCTAA+GGG | 0.612865 | 4.1:+13778190 | None:intergenic |
TGGTCTCATAGGAGCAAGTG+TGG | 0.616525 | 4.1:+13778243 | None:intergenic |
GCCATCTTGAAATGTTGATG+AGG | 0.640047 | 4.1:+13778616 | None:intergenic |
GTTTCCAAAGCTCACCTCAG+CGG | 0.640457 | 4.1:+13778099 | None:intergenic |
TGGAAACAACACAAGAAGCA+GGG | 0.655021 | 4.1:-13778083 | MS.gene53399:CDS |
CTTCAACTGATGAATGTGAG+AGG | 0.660411 | 4.1:-13780171 | MS.gene53399:CDS |
AACATCACTTAGACCCGCTG+AGG | 0.687013 | 4.1:-13778113 | MS.gene53399:CDS |
TCAACAGCCATAAATACACA+AGG | 0.708092 | 4.1:-13778322 | MS.gene53399:CDS |
TGTTACCTTAATCCGAAACG+GGG | 0.717028 | 4.1:+13777997 | None:intergenic |
CCGGAGCAAGAAACTTGACG+AGG | 0.718472 | 4.1:-13779449 | MS.gene53399:CDS |
TTGTTCATGATATCTAAGGG+AGG | 0.723510 | 4.1:+13778193 | None:intergenic |
GTTACCTTAATCCGAAACGG+GGG | 0.736055 | 4.1:+13777998 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAATATATTAAAATAAAA+GGG | - | chr4.1:13778000-13778019 | MS.gene53399:intron | 0.0% |
!! | AAATATATTAAAATAAAAGG+GGG | - | chr4.1:13778002-13778021 | MS.gene53399:intron | 10.0% |
!!! | AGAATTTTTTTTTCATTATA+GGG | + | chr4.1:13778650-13778669 | None:intergenic | 10.0% |
!!! | TAGAATTTTTTTTTCATTAT+AGG | + | chr4.1:13778651-13778670 | None:intergenic | 10.0% |
!! | AATATATTAAAATAAAAGGG+GGG | - | chr4.1:13778003-13778022 | MS.gene53399:CDS | 15.0% |
!! | AATGTCAAAATAAACAAAAT+CGG | + | chr4.1:13779278-13779297 | None:intergenic | 15.0% |
!! | AATTGTGAAATTGTTTAATT+TGG | - | chr4.1:13777744-13777763 | MS.gene53399:intron | 15.0% |
!! | ATATAACAGTGAAAAAAATA+TGG | + | chr4.1:13778919-13778938 | None:intergenic | 15.0% |
!! | TCTAATTAAAAATTTGTACT+GGG | - | chr4.1:13779200-13779219 | MS.gene53399:intron | 15.0% |
!! | TGAGAAAATATATATATGAA+AGG | + | chr4.1:13780255-13780274 | None:intergenic | 15.0% |
!!! | AAAGTTACATTTTTTTACTT+AGG | - | chr4.1:13779598-13779617 | MS.gene53399:intron | 15.0% |
!!! | GTATTTCATAAATCATTTTA+TGG | - | chr4.1:13778515-13778534 | MS.gene53399:CDS | 15.0% |
!!! | TTTTCCTTGATTTTTTTTTT+TGG | - | chr4.1:13778432-13778451 | MS.gene53399:intron | 15.0% |
!! | AAACAATTTCACAATTATCT+AGG | + | chr4.1:13777740-13777759 | None:intergenic | 20.0% |
!! | AACAATTTCACAATTATCTA+GGG | + | chr4.1:13777739-13777758 | None:intergenic | 20.0% |
!! | AATAAATACAATAGATTGGT+TGG | - | chr4.1:13778317-13778336 | MS.gene53399:CDS | 20.0% |
!! | ATAGAAAAAATATGAAGTGT+TGG | - | chr4.1:13778361-13778380 | MS.gene53399:CDS | 20.0% |
!! | ATGCAATAAATACAATAGAT+TGG | - | chr4.1:13778313-13778332 | MS.gene53399:CDS | 20.0% |
!! | CACTGTTATATAAAAACAAA+TGG | - | chr4.1:13778928-13778947 | MS.gene53399:intron | 20.0% |
!! | GATTTATAAGACAAAAAAAC+AGG | + | chr4.1:13778793-13778812 | None:intergenic | 20.0% |
!! | GTCTAATTAAAAATTTGTAC+TGG | - | chr4.1:13779199-13779218 | MS.gene53399:intron | 20.0% |
!! | TAGTAATTACATAAAAGAGT+AGG | - | chr4.1:13779177-13779196 | MS.gene53399:intron | 20.0% |
!! | TATATATATACTTACTCTCT+TGG | + | chr4.1:13777681-13777700 | None:intergenic | 20.0% |
!! | TATATATGAAAGGTTAAGAA+AGG | + | chr4.1:13780245-13780264 | None:intergenic | 20.0% |
!! | TATATCAACACTTAATTTCA+AGG | + | chr4.1:13778494-13778513 | None:intergenic | 20.0% |
!! | TTGAACTATTAAAATAGTTG+TGG | + | chr4.1:13779980-13779999 | None:intergenic | 20.0% |
!!! | AATCAAAGTATTACAATACA+AGG | - | chr4.1:13779230-13779249 | MS.gene53399:intron | 20.0% |
!!! | ATAAATACAATAGATTGGTT+GGG | - | chr4.1:13778318-13778337 | MS.gene53399:CDS | 20.0% |
!!! | ATCAAAGTATTACAATACAA+GGG | - | chr4.1:13779231-13779250 | MS.gene53399:intron | 20.0% |
!!! | GTCATCTATTTTAAAATTGA+TGG | - | chr4.1:13779082-13779101 | MS.gene53399:intron | 20.0% |
!!! | TGTAAATTTTTCTTCCAATA+TGG | + | chr4.1:13779849-13779868 | None:intergenic | 20.0% |
!!! | TTATTTTTTTTTCTCTCTAG+TGG | + | chr4.1:13778285-13778304 | None:intergenic | 20.0% |
!!! | TTTATTTTTTTCCATTCAAG+TGG | - | chr4.1:13779571-13779590 | MS.gene53399:intron | 20.0% |
! | AAAGAGAAAGAGAAAAAGTA+TGG | + | chr4.1:13778709-13778728 | None:intergenic | 25.0% |
! | AAATACCGAATGATTTATCT+TGG | - | chr4.1:13778210-13778229 | MS.gene53399:CDS | 25.0% |
! | AAGTAAGTATCATTAGAGTT+GGG | + | chr4.1:13779129-13779148 | None:intergenic | 25.0% |
! | AATTTCTTGAAGAGAAAAGA+TGG | - | chr4.1:13779796-13779815 | MS.gene53399:intron | 25.0% |
! | ACCACCAAAAAAAAAAATCA+AGG | + | chr4.1:13778439-13778458 | None:intergenic | 25.0% |
! | ATAGTTTACCTTGAATTGAT+GGG | + | chr4.1:13779525-13779544 | None:intergenic | 25.0% |
! | ATGATTGTTCATGATATCTA+AGG | + | chr4.1:13779826-13779845 | None:intergenic | 25.0% |
! | CAATTCCAAGATAAATCATT+CGG | + | chr4.1:13778218-13778237 | None:intergenic | 25.0% |
! | GGTATATAAGACAAAATTTG+AGG | - | chr4.1:13777897-13777916 | MS.gene53399:intron | 25.0% |
! | GTTGTGTTCATTATTAATGT+TGG | - | chr4.1:13777786-13777805 | MS.gene53399:intron | 25.0% |
! | TATAGTTTACCTTGAATTGA+TGG | + | chr4.1:13779526-13779545 | None:intergenic | 25.0% |
! | TCTAGTGGTATATTATTCTT+TGG | + | chr4.1:13778270-13778289 | None:intergenic | 25.0% |
! | TGATTGTTCATGATATCTAA+GGG | + | chr4.1:13779825-13779844 | None:intergenic | 25.0% |
!! | AATTTTCATTTCAGATGTAC+CGG | - | chr4.1:13778544-13778563 | MS.gene53399:CDS | 25.0% |
!! | AGATCAATTAATTTTTCTGC+AGG | - | chr4.1:13778047-13778066 | MS.gene53399:CDS | 25.0% |
!! | ATCTTTTCTCTTCAAGAAAT+TGG | + | chr4.1:13779797-13779816 | None:intergenic | 25.0% |
!! | GATCAATTAATTTTTCTGCA+GGG | - | chr4.1:13778048-13778067 | MS.gene53399:CDS | 25.0% |
!! | TAAATACAATAGATTGGTTG+GGG | - | chr4.1:13778319-13778338 | MS.gene53399:CDS | 25.0% |
!! | TTCAAATAAGTGACATCTTT+TGG | - | chr4.1:13778862-13778881 | MS.gene53399:intron | 25.0% |
!!! | ATTTTTTTTTTTGGTGGTGA+TGG | - | chr4.1:13778441-13778460 | MS.gene53399:intron | 25.0% |
!!! | TCCTTGATTTTTTTTTTTGG+TGG | - | chr4.1:13778435-13778454 | MS.gene53399:intron | 25.0% |
AAATGTGCACATGTGTAAAA+CGG | - | chr4.1:13779051-13779070 | MS.gene53399:intron | 30.0% | |
AATGTTACCTTAATCCGAAA+CGG | + | chr4.1:13780020-13780039 | None:intergenic | 30.0% | |
ACGTGAAACAAAAATATCAG+TGG | + | chr4.1:13777981-13778000 | None:intergenic | 30.0% | |
AGAAATGGAACCTAATTCAT+GGG | + | chr4.1:13779349-13779368 | None:intergenic | 30.0% | |
ATAAAAGAGTGATGAAGATC+AGG | + | chr4.1:13777634-13777653 | None:intergenic | 30.0% | |
ATGTGAATGTGAATGTGATA+AGG | + | chr4.1:13779496-13779515 | None:intergenic | 30.0% | |
ATTAGCAAAAGAAACGTAGA+AGG | + | chr4.1:13780170-13780189 | None:intergenic | 30.0% | |
ATTGCTGAAAGACAAACAAT+GGG | - | chr4.1:13780295-13780314 | MS.gene53399:intron | 30.0% | |
CGAATGATTTATCTTGGAAT+TGG | - | chr4.1:13778216-13778235 | MS.gene53399:CDS | 30.0% | |
CTGAGTTTAAGTCAAACAAA+CGG | - | chr4.1:13780332-13780351 | MS.gene53399:intron | 30.0% | |
GAAGTAAGTATCATTAGAGT+TGG | + | chr4.1:13779130-13779149 | None:intergenic | 30.0% | |
GATGATTTAAGTACCATTCT+TGG | + | chr4.1:13779626-13779645 | None:intergenic | 30.0% | |
GGCAGACAAAAAAAAATTCA+AGG | + | chr4.1:13778629-13778648 | None:intergenic | 30.0% | |
GGTACTTAAATCATCAATCT+TGG | - | chr4.1:13779631-13779650 | MS.gene53399:intron | 30.0% | |
GTGTTCATTATTAATGTTGG+TGG | - | chr4.1:13777789-13777808 | MS.gene53399:intron | 30.0% | |
TATTACAATACAAGGGCTTA+GGG | - | chr4.1:13779238-13779257 | MS.gene53399:intron | 30.0% | |
TCATGAACAATCATCCATAT+TGG | - | chr4.1:13779832-13779851 | MS.gene53399:intron | 30.0% | |
TGATCTTCCTTGTGTATTTA+TGG | + | chr4.1:13779700-13779719 | None:intergenic | 30.0% | |
TGGAACAAATAGTATAGTGA+CGG | - | chr4.1:13780056-13780075 | MS.gene53399:intron | 30.0% | |
! | CATTGATAACTATATGCTAC+TGG | - | chr4.1:13780036-13780055 | MS.gene53399:intron | 30.0% |
! | TAACTTTAATGCCACTTGAA+TGG | + | chr4.1:13779585-13779604 | None:intergenic | 30.0% |
! | TGGACTTTCTTTTTCTTGTA+GGG | + | chr4.1:13778680-13778699 | None:intergenic | 30.0% |
! | TTGGACTTTCTTTTTCTTGT+AGG | + | chr4.1:13778681-13778700 | None:intergenic | 30.0% |
!! | GAGAAAAAGTATGGTAGTTT+TGG | + | chr4.1:13778700-13778719 | None:intergenic | 30.0% |
AATTCATTGCTCATGTAGCT+TGG | + | chr4.1:13779660-13779679 | None:intergenic | 35.0% | |
ACCTCATCAACATTTCAAGA+TGG | - | chr4.1:13779395-13779414 | MS.gene53399:intron | 35.0% | |
ATGTGAATGTGATAAGGATG+AGG | + | chr4.1:13779490-13779509 | None:intergenic | 35.0% | |
ATGTTACCTTAATCCGAAAC+GGG | + | chr4.1:13780019-13780038 | None:intergenic | 35.0% | |
ATTCAAAGCCCATCAATTCA+AGG | - | chr4.1:13779514-13779533 | MS.gene53399:intron | 35.0% | |
CAACATTTCAAGATGGCAAA+TGG | - | chr4.1:13779402-13779421 | MS.gene53399:intron | 35.0% | |
CATTGCTGAAAGACAAACAA+TGG | - | chr4.1:13780294-13780313 | MS.gene53399:intron | 35.0% | |
CTTAAACTCAGTTGCAAATC+AGG | + | chr4.1:13780323-13780342 | None:intergenic | 35.0% | |
GAGAAATGGAACCTAATTCA+TGG | + | chr4.1:13779350-13779369 | None:intergenic | 35.0% | |
GTATTACAATACAAGGGCTT+AGG | - | chr4.1:13779237-13779256 | MS.gene53399:intron | 35.0% | |
TAGTGACAAGAGAATTAGAG+AGG | + | chr4.1:13780108-13780127 | None:intergenic | 35.0% | |
TCAACAGCCATAAATACACA+AGG | - | chr4.1:13779690-13779709 | MS.gene53399:intron | 35.0% | |
TGTGAATGTGATAAGGATGA+GGG | + | chr4.1:13779489-13779508 | None:intergenic | 35.0% | |
TGTGGAAATTATAACTGTGC+TGG | + | chr4.1:13779455-13779474 | None:intergenic | 35.0% | |
TGTGTATTTATGGCTGTTGA+TGG | + | chr4.1:13779690-13779709 | None:intergenic | 35.0% | |
TTCTCTTCAAGAAATTGGCT+TGG | + | chr4.1:13779792-13779811 | None:intergenic | 35.0% | |
TTGTTCATGATATCTAAGGG+AGG | + | chr4.1:13779822-13779841 | None:intergenic | 35.0% | |
! | ATCAGTTGAAGCACCAATTT+GGG | + | chr4.1:13777832-13777851 | None:intergenic | 35.0% |
! | CTTCCCAGCAATTTCATTTT+GGG | - | chr4.1:13778759-13778778 | MS.gene53399:intron | 35.0% |
! | CTTTTATGCATGCTGTTGAA+AGG | - | chr4.1:13777647-13777666 | MS.gene53399:CDS | 35.0% |
! | GAAATGTTGATGAGGTATCA+TGG | + | chr4.1:13779391-13779410 | None:intergenic | 35.0% |
! | TTCCCAGCAATTTCATTTTG+GGG | - | chr4.1:13778760-13778779 | MS.gene53399:intron | 35.0% |
! | TTTTACTTAGGCACCAAGAA+TGG | - | chr4.1:13779610-13779629 | MS.gene53399:intron | 35.0% |
!!! | TGGTGGTGATGGTATTTTTT+TGG | - | chr4.1:13778452-13778471 | MS.gene53399:intron | 35.0% |
AACAATGATGGCAAGAGTGA+TGG | - | chr4.1:13780356-13780375 | MS.gene53399:CDS | 40.0% | |
AACCTACAAACATTATCCCC+CGG | + | chr4.1:13778087-13778106 | None:intergenic | 40.0% | |
AGGCGTGTCTAACAAGATTT+AGG | + | chr4.1:13778609-13778628 | None:intergenic | 40.0% | |
CAAACAAACGGCAACAATGA+TGG | - | chr4.1:13780344-13780363 | MS.gene53399:intron | 40.0% | |
CACAGATCAACCCATGAATT+AGG | - | chr4.1:13779336-13779355 | MS.gene53399:intron | 40.0% | |
CATTTCAAGATGGCAAATGG+TGG | - | chr4.1:13779405-13779424 | MS.gene53399:intron | 40.0% | |
CCAAAATGAAATTGCTGGGA+AGG | + | chr4.1:13778761-13778780 | None:intergenic | 40.0% | |
CTTCAACTGATGAATGTGAG+AGG | - | chr4.1:13777841-13777860 | MS.gene53399:intron | 40.0% | |
GCCATCTTGAAATGTTGATG+AGG | + | chr4.1:13779399-13779418 | None:intergenic | 40.0% | |
GGCGTGTCTAACAAGATTTA+GGG | + | chr4.1:13778608-13778627 | None:intergenic | 40.0% | |
TATTTGAAGAGTGAGAGCAG+CGG | + | chr4.1:13778850-13778869 | None:intergenic | 40.0% | |
TGGAAACAACACAAGAAGCA+GGG | - | chr4.1:13779929-13779948 | MS.gene53399:intron | 40.0% | |
TGTTACCTTAATCCGAAACG+GGG | + | chr4.1:13780018-13780037 | None:intergenic | 40.0% | |
TTGAATTTGATCCCCCGTTT+CGG | - | chr4.1:13780003-13780022 | MS.gene53399:intron | 40.0% | |
TTGGAAACAACACAAGAAGC+AGG | - | chr4.1:13779928-13779947 | MS.gene53399:intron | 40.0% | |
! | ATGAGGTATCATGGACTGAT+GGG | + | chr4.1:13779382-13779401 | None:intergenic | 40.0% |
! | CATCAGTTGAAGCACCAATT+TGG | + | chr4.1:13777833-13777852 | None:intergenic | 40.0% |
! | CCTTCCCAGCAATTTCATTT+TGG | - | chr4.1:13778758-13778777 | MS.gene53399:intron | 40.0% |
! | TATCCTTAACTTGAAGCTGC+TGG | + | chr4.1:13779737-13779756 | None:intergenic | 40.0% |
! | TCCCAGCAATTTCATTTTGG+GGG | - | chr4.1:13778761-13778780 | MS.gene53399:intron | 40.0% |
!! | AAGCTGCTGGTTCAAAGTTA+TGG | + | chr4.1:13779724-13779743 | None:intergenic | 40.0% |
!! | AGAAATTGGCTTGGTCTCAT+AGG | + | chr4.1:13779783-13779802 | None:intergenic | 40.0% |
!! | GAGTTTCGTGTCGATTTCTT+TGG | + | chr4.1:13780393-13780412 | None:intergenic | 40.0% |
ATGCATGCTGTTGAAAGGCT+TGG | - | chr4.1:13777652-13777671 | MS.gene53399:CDS | 45.0% | |
ATTCCCCGCAAAACAGGTTT+GGG | - | chr4.1:13778729-13778748 | MS.gene53399:intron | 45.0% | |
CCCCCCAAAATGAAATTGCT+GGG | + | chr4.1:13778765-13778784 | None:intergenic | 45.0% | |
CTCTTTATTCCCCGCAAAAC+AGG | - | chr4.1:13778723-13778742 | MS.gene53399:intron | 45.0% | |
GTTACCTTAATCCGAAACGG+GGG | + | chr4.1:13780017-13780036 | None:intergenic | 45.0% | |
TATTCCCCGCAAAACAGGTT+TGG | - | chr4.1:13778728-13778747 | MS.gene53399:intron | 45.0% | |
TCATGTCAAGAGTCACTTGC+AGG | - | chr4.1:13777876-13777895 | MS.gene53399:intron | 45.0% | |
TCCCCCCAAAATGAAATTGC+TGG | + | chr4.1:13778766-13778785 | None:intergenic | 45.0% | |
! | ATGGGCTACATGGTGAGAAA+TGG | + | chr4.1:13779364-13779383 | None:intergenic | 45.0% |
! | CCCAGCAATTTCATTTTGGG+GGG | - | chr4.1:13778762-13778781 | MS.gene53399:intron | 45.0% |
! | GAACCAGCAGCTTCAAGTTA+AGG | - | chr4.1:13779731-13779750 | MS.gene53399:intron | 45.0% |
! | GATGAGGTATCATGGACTGA+TGG | + | chr4.1:13779383-13779402 | None:intergenic | 45.0% |
!! | GCAATTTCATTTTGGGGGGA+AGG | - | chr4.1:13778766-13778785 | MS.gene53399:intron | 45.0% |
!! | TCATGGGTTGATCTGTGTGT+TGG | + | chr4.1:13779333-13779352 | None:intergenic | 45.0% |
!! | TTAATGTTGGTGGTGCATGC+AGG | - | chr4.1:13777799-13777818 | MS.gene53399:intron | 45.0% |
!! | AAAATATATTAAAATAAAAG+GGG | - | chr4.1:13778001-13778020 | MS.gene53399:intron | 5.0% |
!! | GTAAAATATATTAAAATAAA+AGG | - | chr4.1:13777999-13778018 | MS.gene53399:intron | 5.0% |
!!! | ATTTTTTTTATTGATTAATT+TGG | + | chr4.1:13778194-13778213 | None:intergenic | 5.0% |
AAACTTGACGAGGCTGGACA+AGG | - | chr4.1:13778573-13778592 | MS.gene53399:CDS | 50.0% | |
AACATCACTTAGACCCGCTG+AGG | - | chr4.1:13779899-13779918 | MS.gene53399:intron | 50.0% | |
AGCAAGAAACTTGACGAGGC+TGG | - | chr4.1:13778567-13778586 | MS.gene53399:CDS | 50.0% | |
CACCGGGGGATAATGTTTGT+AGG | - | chr4.1:13778082-13778101 | MS.gene53399:CDS | 50.0% | |
CATGCTGTTGAAAGGCTTGG+AGG | - | chr4.1:13777655-13777674 | MS.gene53399:CDS | 50.0% | |
CCTCGTCAAGTTTCTTGCTC+CGG | + | chr4.1:13778566-13778585 | None:intergenic | 50.0% | |
CTACAAACATTATCCCCCGG+TGG | + | chr4.1:13778084-13778103 | None:intergenic | 50.0% | |
GTGATAAGGATGAGGGATGC+AGG | + | chr4.1:13779482-13779501 | None:intergenic | 50.0% | |
GTTTCCAAAGCTCACCTCAG+CGG | + | chr4.1:13779916-13779935 | None:intergenic | 50.0% | |
TGATCCCCCGTTTCGGATTA+AGG | - | chr4.1:13780010-13780029 | MS.gene53399:intron | 50.0% | |
TGCAGGAGCAACACCCAAAT+TGG | - | chr4.1:13777816-13777835 | MS.gene53399:intron | 50.0% | |
TGGTCTCATAGGAGCAAGTG+TGG | + | chr4.1:13779772-13779791 | None:intergenic | 50.0% | |
TTCCCCGCAAAACAGGTTTG+GGG | - | chr4.1:13778730-13778749 | MS.gene53399:intron | 50.0% | |
TTTCCAAAGCTCACCTCAGC+GGG | + | chr4.1:13779915-13779934 | None:intergenic | 50.0% | |
!! | TCATGGACTGATGGGCTACA+TGG | + | chr4.1:13779374-13779393 | None:intergenic | 50.0% |
ACATTATCCCCCGGTGGACA+CGG | + | chr4.1:13778078-13778097 | None:intergenic | 55.0% | |
ATGAGGGATGCAGGAGACTG+TGG | + | chr4.1:13779473-13779492 | None:intergenic | 55.0% | |
CCGGAGCAAGAAACTTGACG+AGG | - | chr4.1:13778563-13778582 | MS.gene53399:CDS | 55.0% | |
TCAGGAGTCCACCTAAGCCT+AGG | + | chr4.1:13777616-13777635 | None:intergenic | 55.0% | |
TCCCCGCAAAACAGGTTTGG+GGG | - | chr4.1:13778731-13778750 | MS.gene53399:intron | 55.0% | |
TGACGAGGCTGGACAAGGTA+AGG | - | chr4.1:13778578-13778597 | MS.gene53399:CDS | 55.0% | |
! | ACCCCCCAAACCTGTTTTGC+GGG | + | chr4.1:13778736-13778755 | None:intergenic | 55.0% |
! | CACCCCCCAAACCTGTTTTG+CGG | + | chr4.1:13778737-13778756 | None:intergenic | 55.0% |
AGACCCGCTGAGGTGAGCTT+TGG | - | chr4.1:13779909-13779928 | MS.gene53399:intron | 60.0% | |
CCCCGCAAAACAGGTTTGGG+GGG | - | chr4.1:13778732-13778751 | MS.gene53399:intron | 60.0% | |
! | CCCCCCAAACCTGTTTTGCG+GGG | + | chr4.1:13778735-13778754 | None:intergenic | 60.0% |
AGGGTGATCCGTGTCCACCG+GGG | - | chr4.1:13778067-13778086 | MS.gene53399:CDS | 65.0% | |
CAGGGTGATCCGTGTCCACC+GGG | - | chr4.1:13778066-13778085 | MS.gene53399:CDS | 65.0% | |
GCAGGGTGATCCGTGTCCAC+CGG | - | chr4.1:13778065-13778084 | MS.gene53399:CDS | 65.0% | |
GGGTGATCCGTGTCCACCGG+GGG | - | chr4.1:13778068-13778087 | MS.gene53399:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 13777610 | 13780424 | 13777610 | ID=MS.gene53399 |
chr4.1 | mRNA | 13777610 | 13780424 | 13777610 | ID=MS.gene53399.t1;Parent=MS.gene53399 |
chr4.1 | exon | 13780349 | 13780424 | 13780349 | ID=MS.gene53399.t1.exon1;Parent=MS.gene53399.t1 |
chr4.1 | CDS | 13780349 | 13780424 | 13780349 | ID=cds.MS.gene53399.t1;Parent=MS.gene53399.t1 |
chr4.1 | exon | 13780137 | 13780213 | 13780137 | ID=MS.gene53399.t1.exon2;Parent=MS.gene53399.t1 |
chr4.1 | CDS | 13780137 | 13780213 | 13780137 | ID=cds.MS.gene53399.t1;Parent=MS.gene53399.t1 |
chr4.1 | exon | 13779440 | 13779476 | 13779440 | ID=MS.gene53399.t1.exon3;Parent=MS.gene53399.t1 |
chr4.1 | CDS | 13779440 | 13779476 | 13779440 | ID=cds.MS.gene53399.t1;Parent=MS.gene53399.t1 |
chr4.1 | exon | 13778499 | 13778712 | 13778499 | ID=MS.gene53399.t1.exon4;Parent=MS.gene53399.t1 |
chr4.1 | CDS | 13778499 | 13778712 | 13778499 | ID=cds.MS.gene53399.t1;Parent=MS.gene53399.t1 |
chr4.1 | exon | 13778003 | 13778414 | 13778003 | ID=MS.gene53399.t1.exon5;Parent=MS.gene53399.t1 |
chr4.1 | CDS | 13778003 | 13778414 | 13778003 | ID=cds.MS.gene53399.t1;Parent=MS.gene53399.t1 |
chr4.1 | exon | 13777610 | 13777753 | 13777610 | ID=MS.gene53399.t1.exon6;Parent=MS.gene53399.t1 |
chr4.1 | CDS | 13777610 | 13777753 | 13777610 | ID=cds.MS.gene53399.t1;Parent=MS.gene53399.t1 |
Gene Sequence |
Protein sequence |