AlfalfaGEDB | MS.gene53484

M. sativa cultivar XinJiangDaYe / MS.gene53484

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0008270 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043167 GO:0043169 GO:0043565 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53484.t1	AET04474.1	90.4	156	15	0	1	156	1	156	4.70E-62	247.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53484.t1	G7L9K0	90.4	156	15	0	1	156	1	156	3.4e-62	247.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene53484.t1	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53484.t1	MTR_8g089170	92.308	156	12	0	1	156	1	156	5.35e-100	284
MS.gene53484.t1	MTR_8g089130	84.177	158	23	2	1	156	1	158	1.95e-90	260
MS.gene53484.t1	MTR_8g089145	87.671	73	9	0	1	73	1	73	2.75e-42	135
MS.gene53484.t1	MTR_1g089830	37.500	152	66	4	4	155	3	125	5.59e-22	86.3
MS.gene53484.t1	MTR_4g028990	54.545	77	33	1	81	155	20	96	2.37e-20	80.5
MS.gene53484.t1	MTR_1g045040	39.333	150	65	4	7	155	6	130	2.12e-19	79.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 31 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACTTGTTACGAACAG+TGG	0.644687	4.2:-12343358	MS.gene53484:CDS
AAATGAAATTGGCCTTGGAG+CGG	0.608265	4.2:-12342946	MS.gene53484:CDS
AGATGAGTCATCTCCAGAAG+AGG	0.604525	4.2:-12343006	MS.gene53484:CDS
AGCAACTCCAGCATGGCGCC+AGG	0.436034	4.2:-12343476	MS.gene53484:CDS
ATCTGAATCAGAAACATCAA+TGG	0.539843	4.2:+12343297	None:intergenic
ATTCTCAAACTACGTCTCTT+TGG	0.299791	4.2:+12343104	None:intergenic
CAATCAGAAGATGACACCGA+TGG	0.614119	4.2:-12343078	MS.gene53484:CDS
CATAAAACTGGCTTGTCTTC+TGG	0.266801	4.2:+12343451	None:intergenic
CATCACCAGCAACTCCAGCA+TGG	0.651498	4.2:-12343483	MS.gene53484:CDS
CCAAGGCCAATTTCATTTGA+AGG	0.421742	4.2:+12342951	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTGAATCAGAAACATCAA+TGG	+	chr4.2:12343110-12343129	None:intergenic	30.0%
ATTCTCAAACTACGTCTCTT+TGG	+	chr4.2:12343303-12343322	None:intergenic	35.0%
GAAAACAACGTTTGAGAGAA+TGG	+	chr4.2:12343024-12343043	None:intergenic	35.0%
TCTTGTTGAAACTTCTCCAT+CGG	+	chr4.2:12343345-12343364	None:intergenic	35.0%
TGGACTAAGATACCAAAACT+GGG	-	chr4.2:12342985-12343004	MS.gene53484:CDS	35.0%
CCAAGGCCAATTTCATTTGA+AGG	+	chr4.2:12343456-12343475	None:intergenic	40.0%
CCACATGCATTGCATAAAAC+TGG	+	chr4.2:12342968-12342987	None:intergenic	40.0%
GGACTAAGATACCAAAACTG+GGG	-	chr4.2:12342986-12343005	MS.gene53484:CDS	40.0%
GTTTGAGAGAATGGTCTTTG+AGG	+	chr4.2:12343015-12343034	None:intergenic	40.0%
TCAAACAATAAGGCCTCTTC+TGG	+	chr4.2:12343414-12343433	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	12342914	12343512	12342914	ID=MS.gene53484
chr4.2	mRNA	12342914	12343512	12342914	ID=MS.gene53484.t1;Parent=MS.gene53484
chr4.2	exon	12343293	12343512	12343293	ID=MS.gene53484.t1.exon1;Parent=MS.gene53484.t1
chr4.2	CDS	12343293	12343512	12343293	ID=cds.MS.gene53484.t1;Parent=MS.gene53484.t1
chr4.2	exon	12342914	12343164	12342914	ID=MS.gene53484.t1.exon2;Parent=MS.gene53484.t1
chr4.2	CDS	12342914	12343164	12342914	ID=cds.MS.gene53484.t1;Parent=MS.gene53484.t1

Gene Sequence

>MS.gene53484

ATGGATTCATCACCAGCAACTCCAGCATGGCGCCAGGGACCAGAAGACAAGCCAGTTTTATGCAATGCATGTGGACTAAGATACCAAAACTGGGGAAACCTCAAAGACCATTCTCTCAAACGTTGTTTTCCAAAAGAACTTGTTACGAACAGTGGCAACAGTAGCAACAAGAGTCTCAAAGAAAGTTCATCAACCATTGATGTTTCTGATTCAGATAATGGTATGTGTTTATACTAGTACTAGCCATTTTCACTCTTTTCTTTACAATGATATATATTACTTTTGTGAGGGTGGGCGTGCGTGAATACTTCTTTTAAATTGTCAATAAATAAGAGAATTTTTACTCAGATGAAAAAGATTCAGATTCATGCAAGTCTGCAGTCTCTCCAAAGAGACGTAGTTTGAGAATTATCAATCAGAAGATGACACCGATGGAGAAGTTTCAACAAGAACTTCTCGATGAGTTGAAAAATCACGAGATACCAGATGAGTCATCTCCAGAAGAGGCCTTATTGTTTGAAAATGTGAACAACTTCATACCTTCAAATGAAATTGGCCTTGGAGCGGTTCTTCTTAAACCAGACGGTTCTTCTATGTAG

Protein sequence

>MS.gene53484.t1

MDSSPATPAWRQGPEDKPVLCNACGLRYQNWGNLKDHSLKRCFPKELVTNSGNSSNKSLKESSSTIDVSDSDNDEKDSDSCKSAVSPKRRSLRIINQKMTPMEKFQQELLDELKNHEIPDESSPEEALLFENVNNFIPSNEIGLGAVLLKPDGSSM