Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53592.t1 | XP_013467138.1 | 86.4 | 352 | 19 | 2 | 1 | 351 | 1 | 324 | 1.20E-137 | 499.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53592.t1 | Q84R27 | 37.6 | 101 | 59 | 3 | 8 | 107 | 30 | 127 | 3.4e-08 | 60.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53592.t1 | A0A072VGJ6 | 86.4 | 352 | 19 | 2 | 1 | 351 | 1 | 324 | 8.6e-138 | 499.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene53592.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53592.t1 | MTR_1g046340 | 61.254 | 351 | 115 | 4 | 2 | 351 | 5 | 335 | 1.81e-135 | 389 |
MS.gene53592.t1 | MTR_1g046200 | 91.716 | 169 | 13 | 1 | 184 | 351 | 156 | 324 | 3.20e-111 | 327 |
MS.gene53592.t1 | MTR_1g046320 | 72.674 | 172 | 45 | 1 | 179 | 350 | 164 | 333 | 2.54e-87 | 266 |
MS.gene53592.t1 | MTR_3g088515 | 52.823 | 248 | 98 | 5 | 2 | 246 | 16 | 247 | 7.59e-58 | 188 |
MS.gene53592.t1 | MTR_1g021435 | 26.380 | 163 | 114 | 3 | 9 | 167 | 22 | 182 | 3.20e-14 | 73.6 |
MS.gene53592.t1 | MTR_1g021400 | 25.352 | 142 | 102 | 2 | 13 | 154 | 36 | 173 | 9.50e-12 | 65.9 |
MS.gene53592.t1 | MTR_1g021330 | 27.692 | 130 | 90 | 2 | 9 | 136 | 26 | 153 | 3.25e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53592.t1 | AT3G06160 | 23.256 | 344 | 222 | 6 | 6 | 349 | 8 | 309 | 3.76e-21 | 92.8 |
MS.gene53592.t1 | AT3G06160 | 23.256 | 344 | 222 | 6 | 6 | 349 | 8 | 309 | 3.76e-21 | 92.8 |
MS.gene53592.t1 | AT3G06160 | 23.256 | 344 | 222 | 6 | 6 | 349 | 8 | 309 | 3.76e-21 | 92.8 |
MS.gene53592.t1 | AT3G06160 | 23.256 | 344 | 222 | 6 | 6 | 349 | 23 | 324 | 4.16e-21 | 92.8 |
MS.gene53592.t1 | AT3G06160 | 23.256 | 344 | 222 | 6 | 6 | 349 | 67 | 368 | 8.98e-21 | 92.8 |
MS.gene53592.t1 | AT5G57720 | 21.972 | 355 | 202 | 13 | 5 | 349 | 10 | 299 | 2.30e-14 | 73.2 |
MS.gene53592.t1 | AT3G18960 | 37.624 | 101 | 59 | 3 | 8 | 107 | 30 | 127 | 7.75e-12 | 64.3 |
MS.gene53592.t1 | AT3G18960 | 37.624 | 101 | 59 | 3 | 8 | 107 | 30 | 127 | 9.03e-12 | 63.9 |
MS.gene53592.t1 | AT4G01580 | 36.364 | 99 | 59 | 3 | 8 | 105 | 30 | 125 | 2.92e-11 | 62.4 |
MS.gene53592.t1 | AT5G66980 | 23.164 | 354 | 223 | 12 | 1 | 348 | 4 | 314 | 7.84e-11 | 63.2 |
Find 58 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAATGAAGTGTGGATTTC+CGG | 0.187944 | 1.2:+29120267 | None:intergenic |
AAATCCTTGATAACATTCTT+TGG | 0.259575 | 1.2:+29119928 | None:intergenic |
TGTTAAGGGTGCACATTGTT+AGG | 0.310846 | 1.2:-29119527 | MS.gene53592:CDS |
TGCTGCTGATGATGATATTA+TGG | 0.325258 | 1.2:-29120627 | MS.gene53592:CDS |
GCATCAATTTCGTCGTCTTC+AGG | 0.326868 | 1.2:+29120307 | None:intergenic |
CTTACCAGCTTTGCACTTGC+AGG | 0.327904 | 1.2:+29120466 | None:intergenic |
AAGAATTGTACCAATTCATT+AGG | 0.342988 | 1.2:+29120226 | None:intergenic |
TAGAGACGAAAATTCTTTAG+AGG | 0.344242 | 1.2:-29120849 | MS.gene53592:CDS |
AGATCATGATGATGATATTA+TGG | 0.349539 | 1.2:-29120594 | MS.gene53592:CDS |
ATCAAGTTCACAAAAGCATT+AGG | 0.355825 | 1.2:+29120992 | None:intergenic |
TGAACTTGATGCGTTCAAAA+AGG | 0.358189 | 1.2:-29120979 | MS.gene53592:CDS |
CTCTTCCTCTACGATCTCTT+AGG | 0.378241 | 1.2:+29120936 | None:intergenic |
TTGTACCAATTCATTAGGTC+TGG | 0.410085 | 1.2:+29120231 | None:intergenic |
GCAATGAAGTGTGGATTTCC+GGG | 0.417877 | 1.2:+29120268 | None:intergenic |
ATATTGAAAATAACATATTC+AGG | 0.423216 | 1.2:-29120802 | MS.gene53592:CDS |
ATATGTGTTCTGCTTATTTG+TGG | 0.425629 | 1.2:+29119693 | None:intergenic |
TCAAGTTCACAAAAGCATTA+GGG | 0.428525 | 1.2:+29120993 | None:intergenic |
TCATTCCAGACCTAATGAAT+TGG | 0.430343 | 1.2:-29120236 | MS.gene53592:intron |
CCTTGCAGTGGCAACATTCA+AGG | 0.435374 | 1.2:+29119878 | None:intergenic |
CATGGAGGAAAATAACAATA+TGG | 0.446533 | 1.2:-29120729 | MS.gene53592:CDS |
CATCTCTCCACGTACGTACT+TGG | 0.449196 | 1.2:+29119658 | None:intergenic |
CATGTCAAAGCTCGTCGTAT+TGG | 0.455772 | 1.2:-29120908 | MS.gene53592:CDS |
TATTCCAAAGAATGTTATCA+AGG | 0.458986 | 1.2:-29119932 | MS.gene53592:CDS |
GATGGTCGAGTACGTGTGCT+AGG | 0.481978 | 1.2:-29119639 | MS.gene53592:CDS |
TTGTGGCAAGATGTGATGAT+AGG | 0.486090 | 1.2:+29119710 | None:intergenic |
GAGATCGTAGAGGAAGAGAT+TGG | 0.486399 | 1.2:-29120931 | MS.gene53592:CDS |
GAAGAAATCTGGGTAATCCT+TGG | 0.489215 | 1.2:+29121229 | None:intergenic |
CAATATGGAGGATGAGGAAG+AGG | 0.500994 | 1.2:-29120714 | MS.gene53592:CDS |
GTCGAGTACGTGTGCTAGGG+TGG | 0.503803 | 1.2:-29119635 | MS.gene53592:CDS |
AGAACCTGCAAGTGCAAAGC+TGG | 0.504053 | 1.2:-29120470 | MS.gene53592:intron |
AAATAACAATATGGAGGATG+AGG | 0.505646 | 1.2:-29120720 | MS.gene53592:CDS |
AGAAAAGCACACTGAAAGAA+TGG | 0.515189 | 1.2:-29121192 | MS.gene53592:intron |
ATCAATGTGTGAAAAGAAGA+AGG | 0.520397 | 1.2:-29120759 | MS.gene53592:CDS |
AAGGGTGCACATTGTTAGGA+AGG | 0.552584 | 1.2:-29119523 | MS.gene53592:CDS |
GATGAGGAAGAGGACGGTGA+TGG | 0.556360 | 1.2:-29120704 | MS.gene53592:CDS |
CGAGAATGAAAGAATGTACA+AGG | 0.558420 | 1.2:-29120522 | MS.gene53592:CDS |
TGATGATGATATTATGGCAG+AGG | 0.566025 | 1.2:-29120588 | MS.gene53592:CDS |
AGACGAAAATTCTTTAGAGG+AGG | 0.570120 | 1.2:-29120846 | MS.gene53592:CDS |
GAGATTGTGCTGCGTGAAGA+TGG | 0.578226 | 1.2:-29119561 | MS.gene53592:CDS |
CTTGCAGTGGCAACATTCAA+GGG | 0.578433 | 1.2:+29119879 | None:intergenic |
CAAGTACGTACGTGGAGAGA+TGG | 0.582116 | 1.2:-29119657 | MS.gene53592:CDS |
CCTTGAATGTTGCCACTGCA+AGG | 0.583961 | 1.2:-29119878 | MS.gene53592:intron |
AAAGAAGAAGGTAAGTGACA+TGG | 0.601455 | 1.2:-29120747 | MS.gene53592:CDS |
AATTGTAACTAAGATGGCCA+AGG | 0.605912 | 1.2:-29121246 | None:intergenic |
GAAGAAGGTAAGTGACATGG+AGG | 0.606864 | 1.2:-29120744 | MS.gene53592:CDS |
CATGATACCGATGATGATGA+TGG | 0.612164 | 1.2:-29120557 | MS.gene53592:CDS |
ATGGTCGAGTACGTGTGCTA+GGG | 0.616130 | 1.2:-29119638 | MS.gene53592:CDS |
TCGAGTACGTGTGCTAGGGT+GGG | 0.622095 | 1.2:-29119634 | MS.gene53592:CDS |
GTCATCACCATCATCATCAT+CGG | 0.626181 | 1.2:+29120550 | None:intergenic |
TGATGATGATATTATGGCAG+AGG | 0.627493 | 1.2:-29120621 | MS.gene53592:CDS |
AATTATACTATACCTTGCAG+TGG | 0.634623 | 1.2:+29119866 | None:intergenic |
GGAGGAAAATAACAATATGG+AGG | 0.639547 | 1.2:-29120726 | MS.gene53592:CDS |
AGAGAGGCCAAGTACGTACG+TGG | 0.642453 | 1.2:-29119665 | MS.gene53592:CDS |
GCTGAAATGTATATTCAACC+CGG | 0.655563 | 1.2:-29120286 | MS.gene53592:CDS |
ATGGAGGATGAGGAAGAGGA+CGG | 0.656729 | 1.2:-29120710 | MS.gene53592:CDS |
AGAACACATATCGAAAAGAG+AGG | 0.666945 | 1.2:-29119681 | MS.gene53592:CDS |
TGATGATGATGACGATGACG+AGG | 0.734080 | 1.2:-29120678 | MS.gene53592:CDS |
TTCATCCTAAGAGATCGTAG+AGG | 0.754677 | 1.2:-29120941 | MS.gene53592:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATTGAAAATAACATATTC+AGG | - | chr1.2:29119949-29119968 | MS.gene53592:intron | 15.0% |
!! | TGTCAAAAAAAAAAAAGTAA+TGG | + | chr1.2:29120556-29120575 | None:intergenic | 15.0% |
!!! | TTACTTTTTTTTTTTTGACA+TGG | - | chr1.2:29120556-29120575 | MS.gene53592:CDS | 15.0% |
!! | CAAAAAGGAATAAAAAACAT+TGG | + | chr1.2:29119620-29119639 | None:intergenic | 20.0% |
!! | CTAAATCAAAATAAATCATC+AGG | + | chr1.2:29120392-29120411 | None:intergenic | 20.0% |
!! | TCATAATAGTGAAAAATGAA+AGG | + | chr1.2:29120921-29120940 | None:intergenic | 20.0% |
!! | TTTCAATATGTGTAAAAACA+AGG | + | chr1.2:29119938-29119957 | None:intergenic | 20.0% |
!!! | AAAAAACTTTGAAGAAATCT+GGG | + | chr1.2:29119535-29119554 | None:intergenic | 20.0% |
!!! | CAAAATAGTAGTTTTATCTT+CGG | + | chr1.2:29120324-29120343 | None:intergenic | 20.0% |
!!! | GATGATTTATTTTGATTTAG+CGG | - | chr1.2:29120392-29120411 | MS.gene53592:intron | 20.0% |
! | AAGAATTGTACCAATTCATT+AGG | + | chr1.2:29120528-29120547 | None:intergenic | 25.0% |
! | AATAAAGAGAATAACTAGAC+AGG | + | chr1.2:29120694-29120713 | None:intergenic | 25.0% |
! | ATCAACACATTAAACAAAAG+TGG | + | chr1.2:29120952-29120971 | None:intergenic | 25.0% |
! | ATGGAAAAATCGAAATGTTA+AGG | - | chr1.2:29121209-29121228 | MS.gene53592:CDS | 25.0% |
! | GAAAAATGAAAGGTAAAGAT+TGG | + | chr1.2:29120911-29120930 | None:intergenic | 25.0% |
! | TATTCCAAAGAATGTTATCA+AGG | - | chr1.2:29120819-29120838 | MS.gene53592:CDS | 25.0% |
! | TGGAAAAATCGAAATGTTAA+GGG | - | chr1.2:29121210-29121229 | MS.gene53592:CDS | 25.0% |
!! | AAATCCTTGATAACATTCTT+TGG | + | chr1.2:29120826-29120845 | None:intergenic | 25.0% |
!! | AGATCATGATGATGATATTA+TGG | - | chr1.2:29120157-29120176 | MS.gene53592:intron | 25.0% |
!! | ATATATTTTGCAATGAAGTG+TGG | + | chr1.2:29120495-29120514 | None:intergenic | 25.0% |
!! | CATTTTTCACTATTATGAAG+TGG | - | chr1.2:29120923-29120942 | MS.gene53592:CDS | 25.0% |
!! | CTTTTTGATAAAAACCAGTT+TGG | - | chr1.2:29119633-29119652 | MS.gene53592:CDS | 25.0% |
!! | GAAAAAACTTTGAAGAAATC+TGG | + | chr1.2:29119536-29119555 | None:intergenic | 25.0% |
!!! | CAAACTGGTTTTTATCAAAA+AGG | + | chr1.2:29119635-29119654 | None:intergenic | 25.0% |
AAAAAACATTGGAGAAAGCA+TGG | + | chr1.2:29119609-29119628 | None:intergenic | 30.0% | |
AAATAACAATATGGAGGATG+AGG | - | chr1.2:29120031-29120050 | MS.gene53592:intron | 30.0% | |
AATTATACTATACCTTGCAG+TGG | + | chr1.2:29120888-29120907 | None:intergenic | 30.0% | |
ATATGTGTTCTGCTTATTTG+TGG | + | chr1.2:29121061-29121080 | None:intergenic | 30.0% | |
ATCAATGTGTGAAAAGAAGA+AGG | - | chr1.2:29119992-29120011 | MS.gene53592:intron | 30.0% | |
CAAGTAAAATTGCAACAACT+TGG | + | chr1.2:29120727-29120746 | None:intergenic | 30.0% | |
CATGGAGGAAAATAACAATA+TGG | - | chr1.2:29120022-29120041 | MS.gene53592:intron | 30.0% | |
TAGAGACGAAAATTCTTTAG+AGG | - | chr1.2:29119902-29119921 | MS.gene53592:CDS | 30.0% | |
TATTTCTTTGCATACCAAAC+TGG | + | chr1.2:29119650-29119669 | None:intergenic | 30.0% | |
TTCAAAAAGGAAGGTCATAA+AGG | - | chr1.2:29119785-29119804 | MS.gene53592:intron | 30.0% | |
!! | ATCAAGTTCACAAAAGCATT+AGG | + | chr1.2:29119762-29119781 | None:intergenic | 30.0% |
!! | TCAAGTTCACAAAAGCATTA+GGG | + | chr1.2:29119761-29119780 | None:intergenic | 30.0% |
!!! | AAGTTGCATTCATCCTTTTT+TGG | - | chr1.2:29120984-29121003 | MS.gene53592:CDS | 30.0% |
!!! | ATTTTGATTTAGCGGACATT+GGG | - | chr1.2:29120400-29120419 | MS.gene53592:intron | 30.0% |
!!! | TATTTTGATTTAGCGGACAT+TGG | - | chr1.2:29120399-29120418 | MS.gene53592:intron | 30.0% |
AAAGAAGAAGGTAAGTGACA+TGG | - | chr1.2:29120004-29120023 | MS.gene53592:intron | 35.0% | |
ACTTCAAATGTGAAGAGTGA+TGG | + | chr1.2:29120798-29120817 | None:intergenic | 35.0% | |
AGAACACATATCGAAAAGAG+AGG | - | chr1.2:29121070-29121089 | MS.gene53592:intron | 35.0% | |
CGAGAATGAAAGAATGTACA+AGG | - | chr1.2:29120229-29120248 | MS.gene53592:intron | 35.0% | |
GATAAGAAATGACAAGTCGA+AGG | + | chr1.2:29120650-29120669 | None:intergenic | 35.0% | |
GCTGAAATGTATATTCAACC+CGG | - | chr1.2:29120465-29120484 | MS.gene53592:intron | 35.0% | |
GGAGGAAAATAACAATATGG+AGG | - | chr1.2:29120025-29120044 | MS.gene53592:intron | 35.0% | |
TCATTCCAGACCTAATGAAT+TGG | - | chr1.2:29120515-29120534 | MS.gene53592:CDS | 35.0% | |
TGAACTTGATGCGTTCAAAA+AGG | - | chr1.2:29119772-29119791 | MS.gene53592:intron | 35.0% | |
TGTCCTGTCATAACCAAAAA+AGG | + | chr1.2:29121000-29121019 | None:intergenic | 35.0% | |
TTGTACCAATTCATTAGGTC+TGG | + | chr1.2:29120523-29120542 | None:intergenic | 35.0% | |
! | AGAAAAGCACACTGAAAGAA+TGG | - | chr1.2:29119559-29119578 | MS.gene53592:CDS | 35.0% |
! | AGACGAAAATTCTTTAGAGG+AGG | - | chr1.2:29119905-29119924 | MS.gene53592:CDS | 35.0% |
! | TGATGATGATATTATGGCAG+AGG | - | chr1.2:29120130-29120149 | MS.gene53592:intron | 35.0% |
! | TGCTGCTGATGATGATATTA+TGG | - | chr1.2:29120124-29120143 | MS.gene53592:intron | 35.0% |
!!! | AGCTTTATTTTGACGATGGT+TGG | - | chr1.2:29119871-29119890 | MS.gene53592:intron | 35.0% |
!!! | CATCCTTTTTTGGTTATGAC+AGG | - | chr1.2:29120994-29121013 | MS.gene53592:CDS | 35.0% |
!!! | GATGAGCTTTATTTTGACGA+TGG | - | chr1.2:29119867-29119886 | MS.gene53592:intron | 35.0% |
ATTTGCTTAACCCTAGGTAG+AGG | - | chr1.2:29120606-29120625 | MS.gene53592:CDS | 40.0% | |
CTTGATGCGTTCAAAAAGGA+AGG | - | chr1.2:29119776-29119795 | MS.gene53592:intron | 40.0% | |
GAAGAAATCTGGGTAATCCT+TGG | + | chr1.2:29119525-29119544 | None:intergenic | 40.0% | |
GTCATCACCATCATCATCAT+CGG | + | chr1.2:29120204-29120223 | None:intergenic | 40.0% | |
TAGACAGGCATAGAGTACAA+AGG | + | chr1.2:29120679-29120698 | None:intergenic | 40.0% | |
TAGTCCATTTGCTTAACCCT+AGG | - | chr1.2:29120600-29120619 | MS.gene53592:CDS | 40.0% | |
TCTACCTAGGGTTAAGCAAA+TGG | + | chr1.2:29120607-29120626 | None:intergenic | 40.0% | |
TGCAATGAAGTGTGGATTTC+CGG | + | chr1.2:29120487-29120506 | None:intergenic | 40.0% | |
TTCATCCTAAGAGATCGTAG+AGG | - | chr1.2:29119810-29119829 | MS.gene53592:intron | 40.0% | |
TTGTGGCAAGATGTGATGAT+AGG | + | chr1.2:29121044-29121063 | None:intergenic | 40.0% | |
! | CATGATACCGATGATGATGA+TGG | - | chr1.2:29120194-29120213 | MS.gene53592:intron | 40.0% |
! | TGACATGTTTTGTGAAGCAG+AGG | + | chr1.2:29120852-29120871 | None:intergenic | 40.0% |
! | TGTTAAGGGTGCACATTGTT+AGG | - | chr1.2:29121224-29121243 | MS.gene53592:CDS | 40.0% |
CAATATGGAGGATGAGGAAG+AGG | - | chr1.2:29120037-29120056 | MS.gene53592:intron | 45.0% | |
CATGTCAAAGCTCGTCGTAT+TGG | - | chr1.2:29119843-29119862 | MS.gene53592:intron | 45.0% | |
CTCTTCCTCTACGATCTCTT+AGG | + | chr1.2:29119818-29119837 | None:intergenic | 45.0% | |
CTTGCAGTGGCAACATTCAA+GGG | + | chr1.2:29120875-29120894 | None:intergenic | 45.0% | |
GAAGAAGGTAAGTGACATGG+AGG | - | chr1.2:29120007-29120026 | MS.gene53592:intron | 45.0% | |
GAGATCGTAGAGGAAGAGAT+TGG | - | chr1.2:29119820-29119839 | MS.gene53592:intron | 45.0% | |
GCAATGAAGTGTGGATTTCC+GGG | + | chr1.2:29120486-29120505 | None:intergenic | 45.0% | |
GCATCAATTTCGTCGTCTTC+AGG | + | chr1.2:29120447-29120466 | None:intergenic | 45.0% | |
TCGACTAACTCCTCTACCTA+GGG | + | chr1.2:29120619-29120638 | None:intergenic | 45.0% | |
TTCGACTAACTCCTCTACCT+AGG | + | chr1.2:29120620-29120639 | None:intergenic | 45.0% | |
! | AAGGGTGCACATTGTTAGGA+AGG | - | chr1.2:29121228-29121247 | MS.gene53592:CDS | 45.0% |
! | TGATGATGATGACGATGACG+AGG | - | chr1.2:29120073-29120092 | MS.gene53592:intron | 45.0% |
AGAACCTGCAAGTGCAAAGC+TGG | - | chr1.2:29120281-29120300 | MS.gene53592:CDS | 50.0% | |
ATGGAGGATGAGGAAGAGGA+CGG | - | chr1.2:29120041-29120060 | MS.gene53592:intron | 50.0% | |
ATGGTCGAGTACGTGTGCTA+GGG | - | chr1.2:29121113-29121132 | MS.gene53592:intron | 50.0% | |
CAAGTACGTACGTGGAGAGA+TGG | - | chr1.2:29121094-29121113 | MS.gene53592:intron | 50.0% | |
CATCTCTCCACGTACGTACT+TGG | + | chr1.2:29121096-29121115 | None:intergenic | 50.0% | |
CCTTGAATGTTGCCACTGCA+AGG | - | chr1.2:29120873-29120892 | MS.gene53592:CDS | 50.0% | |
CCTTGCAGTGGCAACATTCA+AGG | + | chr1.2:29120876-29120895 | None:intergenic | 50.0% | |
CTTACCAGCTTTGCACTTGC+AGG | + | chr1.2:29120288-29120307 | None:intergenic | 50.0% | |
GAGATTGTGCTGCGTGAAGA+TGG | - | chr1.2:29121190-29121209 | MS.gene53592:intron | 50.0% | |
AGAGAGGCCAAGTACGTACG+TGG | - | chr1.2:29121086-29121105 | MS.gene53592:intron | 55.0% | |
GATGAGGAAGAGGACGGTGA+TGG | - | chr1.2:29120047-29120066 | MS.gene53592:intron | 55.0% | |
GATGGTCGAGTACGTGTGCT+AGG | - | chr1.2:29121112-29121131 | MS.gene53592:intron | 55.0% | |
TCGAGTACGTGTGCTAGGGT+GGG | - | chr1.2:29121117-29121136 | MS.gene53592:intron | 55.0% | |
GTCGAGTACGTGTGCTAGGG+TGG | - | chr1.2:29121116-29121135 | MS.gene53592:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 29119518 | 29121255 | 29119518 | ID=MS.gene53592 |
chr1.2 | mRNA | 29119518 | 29121255 | 29119518 | ID=MS.gene53592.t1;Parent=MS.gene53592 |
chr1.2 | exon | 29121193 | 29121255 | 29121193 | ID=MS.gene53592.t1.exon1;Parent=MS.gene53592.t1 |
chr1.2 | CDS | 29121193 | 29121255 | 29121193 | ID=cds.MS.gene53592.t1;Parent=MS.gene53592.t1 |
chr1.2 | exon | 29120471 | 29121020 | 29120471 | ID=MS.gene53592.t1.exon2;Parent=MS.gene53592.t1 |
chr1.2 | CDS | 29120471 | 29121020 | 29120471 | ID=cds.MS.gene53592.t1;Parent=MS.gene53592.t1 |
chr1.2 | exon | 29120237 | 29120361 | 29120237 | ID=MS.gene53592.t1.exon3;Parent=MS.gene53592.t1 |
chr1.2 | CDS | 29120237 | 29120361 | 29120237 | ID=cds.MS.gene53592.t1;Parent=MS.gene53592.t1 |
chr1.2 | exon | 29119879 | 29119956 | 29119879 | ID=MS.gene53592.t1.exon4;Parent=MS.gene53592.t1 |
chr1.2 | CDS | 29119879 | 29119956 | 29119879 | ID=cds.MS.gene53592.t1;Parent=MS.gene53592.t1 |
chr1.2 | exon | 29119518 | 29119757 | 29119518 | ID=MS.gene53592.t1.exon5;Parent=MS.gene53592.t1 |
chr1.2 | CDS | 29119518 | 29119757 | 29119518 | ID=cds.MS.gene53592.t1;Parent=MS.gene53592.t1 |
Gene Sequence |
Protein sequence |