Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53644.t1 | XP_024632961.1 | 94.2 | 538 | 23 | 1 | 1 | 530 | 1 | 538 | 1.00E-281 | 978.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53644.t1 | Q9SZL8 | 27.8 | 468 | 315 | 8 | 50 | 515 | 72 | 518 | 2.1e-54 | 214.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53644.t1 | D3YBB9 | 83.6 | 488 | 80 | 0 | 43 | 530 | 75 | 562 | 1.3e-241 | 845.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene53644.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53644.t1 | MTR_0558s0020 | 88.746 | 311 | 20 | 1 | 1 | 311 | 1 | 296 | 0.0 | 576 |
| MS.gene53644.t1 | MTR_1g083640 | 93.357 | 286 | 19 | 0 | 1 | 286 | 1 | 286 | 0.0 | 561 |
| MS.gene53644.t1 | MTR_8g446020 | 77.170 | 311 | 16 | 2 | 1 | 311 | 1 | 256 | 3.92e-167 | 473 |
| MS.gene53644.t1 | MTR_2g014100 | 86.957 | 253 | 24 | 2 | 1 | 252 | 1 | 245 | 2.76e-158 | 451 |
| MS.gene53644.t1 | MTR_6g090505 | 87.764 | 237 | 29 | 0 | 81 | 317 | 1 | 237 | 4.90e-152 | 439 |
| MS.gene53644.t1 | MTR_6g090505 | 62.963 | 108 | 13 | 2 | 406 | 511 | 224 | 306 | 8.11e-32 | 126 |
| MS.gene53644.t1 | MTR_0337s0040 | 73.091 | 275 | 20 | 2 | 1 | 275 | 1 | 221 | 1.18e-134 | 390 |
| MS.gene53644.t1 | MTR_3g008240 | 83.486 | 218 | 21 | 1 | 1 | 218 | 1 | 203 | 3.32e-128 | 372 |
| MS.gene53644.t1 | MTR_4g040430 | 83.945 | 218 | 15 | 2 | 1 | 218 | 1 | 198 | 1.19e-127 | 371 |
| MS.gene53644.t1 | MTR_5g071590 | 86.339 | 183 | 22 | 1 | 1 | 183 | 1 | 180 | 1.17e-112 | 332 |
| MS.gene53644.t1 | MTR_1g055240 | 92.958 | 142 | 10 | 0 | 107 | 248 | 3 | 144 | 3.19e-94 | 284 |
| MS.gene53644.t1 | MTR_0019s0290 | 88.235 | 153 | 15 | 1 | 100 | 249 | 8 | 160 | 6.30e-94 | 283 |
| MS.gene53644.t1 | MTR_1281s0010 | 94.495 | 109 | 6 | 0 | 35 | 143 | 1 | 109 | 8.11e-69 | 217 |
| MS.gene53644.t1 | MTR_6g051425 | 30.539 | 334 | 196 | 7 | 56 | 368 | 22 | 340 | 7.59e-40 | 148 |
| MS.gene53644.t1 | MTR_8g046060 | 79.167 | 96 | 11 | 2 | 1 | 95 | 91 | 178 | 1.17e-37 | 138 |
| MS.gene53644.t1 | MTR_0337s0060 | 90.000 | 70 | 7 | 0 | 463 | 532 | 21 | 90 | 1.73e-36 | 135 |
| MS.gene53644.t1 | MTR_4g008820 | 76.842 | 95 | 7 | 1 | 1 | 95 | 125 | 204 | 3.15e-35 | 140 |
| MS.gene53644.t1 | MTR_1g070355 | 24.272 | 309 | 209 | 7 | 3 | 307 | 24 | 311 | 1.47e-19 | 92.4 |
| MS.gene53644.t1 | MTR_0337s0050 | 80.556 | 36 | 7 | 0 | 275 | 310 | 14 | 49 | 3.14e-14 | 68.2 |
| MS.gene53644.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 65 | 249 | 40 | 205 | 6.24e-13 | 71.6 |
| MS.gene53644.t1 | MTR_1g013060 | 29.630 | 216 | 133 | 8 | 56 | 269 | 29 | 227 | 6.97e-13 | 68.6 |
| MS.gene53644.t1 | MTR_4g035820 | 22.642 | 265 | 180 | 5 | 56 | 315 | 80 | 324 | 4.84e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53644.t1 | AT4G38180 | 27.754 | 472 | 310 | 8 | 50 | 515 | 72 | 518 | 7.34e-59 | 209 |
| MS.gene53644.t1 | AT3G06250 | 25.523 | 478 | 286 | 9 | 39 | 514 | 178 | 587 | 2.10e-42 | 162 |
| MS.gene53644.t1 | AT3G06250 | 25.523 | 478 | 286 | 9 | 39 | 514 | 178 | 587 | 2.10e-42 | 162 |
| MS.gene53644.t1 | AT3G06250 | 25.523 | 478 | 286 | 9 | 39 | 514 | 178 | 587 | 2.10e-42 | 162 |
| MS.gene53644.t1 | AT4G15090 | 25.773 | 388 | 279 | 5 | 139 | 523 | 121 | 502 | 2.56e-40 | 156 |
| MS.gene53644.t1 | AT4G15090 | 25.773 | 388 | 279 | 5 | 139 | 523 | 121 | 502 | 2.56e-40 | 156 |
| MS.gene53644.t1 | AT4G15090 | 25.773 | 388 | 279 | 5 | 139 | 523 | 121 | 502 | 2.56e-40 | 156 |
| MS.gene53644.t1 | AT4G15090 | 25.773 | 388 | 279 | 5 | 139 | 523 | 121 | 502 | 2.56e-40 | 156 |
| MS.gene53644.t1 | AT4G15090 | 25.773 | 388 | 279 | 5 | 139 | 523 | 121 | 502 | 2.56e-40 | 156 |
| MS.gene53644.t1 | AT1G76320 | 25.758 | 462 | 301 | 11 | 57 | 512 | 3 | 428 | 4.21e-39 | 151 |
| MS.gene53644.t1 | AT1G76320 | 25.647 | 464 | 303 | 11 | 55 | 512 | 1 | 428 | 6.32e-39 | 151 |
| MS.gene53644.t1 | AT1G76320 | 25.647 | 464 | 303 | 11 | 55 | 512 | 1 | 428 | 6.32e-39 | 151 |
| MS.gene53644.t1 | AT1G76320 | 25.647 | 464 | 303 | 11 | 55 | 512 | 1 | 428 | 7.08e-39 | 151 |
| MS.gene53644.t1 | AT2G27110 | 28.720 | 289 | 198 | 3 | 229 | 515 | 36 | 318 | 3.36e-38 | 149 |
| MS.gene53644.t1 | AT2G27110 | 28.720 | 289 | 198 | 3 | 229 | 515 | 181 | 463 | 3.38e-38 | 150 |
| MS.gene53644.t1 | AT2G27110 | 28.720 | 289 | 198 | 3 | 229 | 515 | 181 | 463 | 3.38e-38 | 150 |
| MS.gene53644.t1 | AT1G10240 | 26.517 | 445 | 289 | 13 | 65 | 498 | 62 | 479 | 3.66e-38 | 149 |
| MS.gene53644.t1 | AT1G10240 | 26.517 | 445 | 289 | 13 | 65 | 498 | 62 | 479 | 3.66e-38 | 149 |
| MS.gene53644.t1 | AT5G18960 | 25.259 | 483 | 288 | 13 | 37 | 514 | 197 | 611 | 5.44e-37 | 146 |
| MS.gene53644.t1 | AT5G18960 | 25.259 | 483 | 288 | 13 | 37 | 514 | 197 | 611 | 5.44e-37 | 146 |
| MS.gene53644.t1 | AT4G38170 | 27.985 | 268 | 182 | 4 | 251 | 515 | 24 | 283 | 6.97e-37 | 144 |
| MS.gene53644.t1 | AT5G28530 | 26.531 | 441 | 280 | 12 | 56 | 478 | 60 | 474 | 1.98e-36 | 144 |
| MS.gene53644.t1 | AT5G28530 | 26.531 | 441 | 280 | 12 | 56 | 478 | 60 | 474 | 2.30e-36 | 144 |
| MS.gene53644.t1 | AT5G28530 | 26.531 | 441 | 280 | 12 | 56 | 478 | 60 | 474 | 2.30e-36 | 144 |
| MS.gene53644.t1 | AT3G22170 | 22.037 | 481 | 334 | 8 | 48 | 523 | 67 | 511 | 9.94e-36 | 142 |
| MS.gene53644.t1 | AT3G22170 | 22.037 | 481 | 334 | 8 | 48 | 523 | 67 | 511 | 9.94e-36 | 142 |
| MS.gene53644.t1 | AT1G80010 | 25.773 | 485 | 321 | 14 | 57 | 530 | 101 | 557 | 1.53e-35 | 141 |
| MS.gene53644.t1 | AT4G19990 | 24.664 | 446 | 287 | 11 | 57 | 499 | 27 | 426 | 3.62e-31 | 128 |
| MS.gene53644.t1 | AT4G19990 | 24.664 | 446 | 287 | 11 | 57 | 499 | 27 | 426 | 3.62e-31 | 128 |
| MS.gene53644.t1 | AT4G19990 | 24.664 | 446 | 287 | 11 | 57 | 499 | 27 | 426 | 3.74e-31 | 128 |
| MS.gene53644.t1 | AT4G19990 | 24.664 | 446 | 287 | 11 | 57 | 499 | 41 | 440 | 4.19e-31 | 128 |
| MS.gene53644.t1 | AT4G19990 | 24.664 | 446 | 287 | 11 | 57 | 499 | 27 | 426 | 4.92e-31 | 128 |
| MS.gene53644.t1 | AT4G19990 | 24.664 | 446 | 287 | 11 | 57 | 499 | 27 | 426 | 4.92e-31 | 128 |
| MS.gene53644.t1 | AT2G32250 | 24.066 | 482 | 292 | 11 | 34 | 511 | 23 | 434 | 1.08e-30 | 127 |
| MS.gene53644.t1 | AT2G32250 | 24.066 | 482 | 292 | 11 | 34 | 511 | 23 | 434 | 1.08e-30 | 127 |
| MS.gene53644.t1 | AT2G32250 | 24.066 | 482 | 292 | 11 | 34 | 511 | 23 | 434 | 1.08e-30 | 127 |
| MS.gene53644.t1 | AT2G32250 | 24.066 | 482 | 292 | 11 | 34 | 511 | 23 | 434 | 1.17e-30 | 127 |
| MS.gene53644.t1 | AT2G32250 | 24.066 | 482 | 292 | 11 | 34 | 511 | 23 | 434 | 1.19e-30 | 127 |
| MS.gene53644.t1 | AT2G32250 | 24.066 | 482 | 292 | 11 | 34 | 511 | 23 | 434 | 1.19e-30 | 127 |
| MS.gene53644.t1 | AT2G32250 | 24.183 | 459 | 276 | 10 | 57 | 511 | 3 | 393 | 1.75e-30 | 126 |
| MS.gene53644.t1 | AT2G32250 | 24.183 | 459 | 276 | 10 | 57 | 511 | 3 | 393 | 2.39e-30 | 126 |
| MS.gene53644.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 235 | 499 | 106 | 369 | 3.55e-30 | 125 |
| MS.gene53644.t1 | AT1G52520 | 24.053 | 449 | 296 | 11 | 57 | 500 | 91 | 499 | 6.12e-30 | 124 |
| MS.gene53644.t1 | AT5G28530 | 22.970 | 431 | 245 | 14 | 56 | 478 | 60 | 411 | 3.70e-17 | 85.1 |
| MS.gene53644.t1 | AT5G28530 | 22.970 | 431 | 245 | 14 | 56 | 478 | 60 | 411 | 3.84e-17 | 85.1 |
Find 62 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 1.1:+29810036 | MS.gene53644:CDS |
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 1.1:+29809446 | MS.gene53644:intron |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 1.1:+29809994 | MS.gene53644:CDS |
| AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 1.1:-29809573 | None:intergenic |
| TTTAGTCTTTCAATCTATTA+AGG | 0.222289 | 1.1:+29808229 | MS.gene53644:CDS |
| GAGAACGTCTTATGAAGTTT+TGG | 0.251408 | 1.1:+29808679 | MS.gene53644:CDS |
| TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 1.1:-29808413 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 1.1:-29808604 | None:intergenic |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 1.1:+29808920 | MS.gene53644:CDS |
| GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 1.1:-29809850 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 1.1:-29808970 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.357876 | 1.1:-29809459 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 1.1:+29808977 | MS.gene53644:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 1.1:+29808969 | MS.gene53644:CDS |
| GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 1.1:+29809819 | MS.gene53644:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 1.1:+29808365 | MS.gene53644:CDS |
| AAAACACCTGGAAAACTATT+CGG | 0.428349 | 1.1:-29809632 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 1.1:+29808617 | MS.gene53644:CDS |
| TTTAAGTCTGAAAACTGAAA+AGG | 0.436258 | 1.1:-29808731 | None:intergenic |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 1.1:-29808202 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 1.1:-29808203 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 1.1:+29808482 | MS.gene53644:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 1.1:+29809868 | MS.gene53644:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 1.1:+29808534 | MS.gene53644:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 1.1:+29808647 | MS.gene53644:CDS |
| GACCGCATCAGCTGACTGTT+GGG | 0.463150 | 1.1:-29810088 | None:intergenic |
| ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 1.1:-29808425 | None:intergenic |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 1.1:+29808402 | MS.gene53644:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 1.1:+29809867 | MS.gene53644:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 1.1:+29810008 | MS.gene53644:CDS |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 1.1:+29808201 | MS.gene53644:CDS |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 1.1:-29808476 | None:intergenic |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 1.1:+29808499 | MS.gene53644:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 1.1:+29810027 | MS.gene53644:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 1.1:+29808331 | MS.gene53644:CDS |
| CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 1.1:-29808587 | None:intergenic |
| GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 1.1:-29808162 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 1.1:+29808376 | MS.gene53644:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 1.1:+29808541 | MS.gene53644:CDS |
| TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 1.1:+29809658 | MS.gene53644:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 1.1:-29808575 | None:intergenic |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 1.1:-29808201 | None:intergenic |
| TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 1.1:-29808163 | None:intergenic |
| AATCGAACAAGTGAGTGGTC+TGG | 0.543268 | 1.1:-29809971 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 1.1:+29808377 | MS.gene53644:CDS |
| AACACAATAACGCACTAGCC+TGG | 0.552106 | 1.1:-29809604 | None:intergenic |
| GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 1.1:+29809822 | MS.gene53644:CDS |
| GGACCGCATCAGCTGACTGT+TGG | 0.570066 | 1.1:-29810089 | None:intergenic |
| TTTACAAACTCAATAACCTG+TGG | 0.584554 | 1.1:-29808440 | None:intergenic |
| ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 1.1:+29810086 | MS.gene53644:CDS |
| CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 1.1:+29809855 | MS.gene53644:CDS |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 1.1:+29808535 | MS.gene53644:CDS |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 1.1:+29808122 | MS.gene53644:CDS |
| GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 1.1:+29808424 | MS.gene53644:CDS |
| ACATCAACTTCATCTGAGAG+TGG | 0.622661 | 1.1:+29808077 | MS.gene53644:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 1.1:+29810009 | MS.gene53644:CDS |
| TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 1.1:-29809584 | None:intergenic |
| GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 1.1:-29809828 | None:intergenic |
| TAAAGAATCGAACAAGTGAG+TGG | 0.654901 | 1.1:-29809976 | None:intergenic |
| TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 1.1:-29808161 | None:intergenic |
| AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 1.1:-29809824 | None:intergenic |
| ACAGACGATTTATACAGACC+AGG | 0.720235 | 1.1:+29809586 | MS.gene53644:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATGATAAATTATTTTGA+TGG | + | chr1.1:29809797-29809816 | MS.gene53644:CDS | 15.0% |
| !!! | TTTTGATGAGTTAAATAATT+TGG | + | chr1.1:29809727-29809746 | MS.gene53644:CDS | 15.0% |
| !! | ACATACTTATTAGAATACTT+AGG | + | chr1.1:29809268-29809287 | MS.gene53644:intron | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | + | chr1.1:29808534-29808553 | MS.gene53644:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | - | chr1.1:29808848-29808867 | None:intergenic | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | + | chr1.1:29808535-29808554 | MS.gene53644:CDS | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | + | chr1.1:29809768-29809787 | MS.gene53644:CDS | 20.0% |
| !!! | ATAACACTGAATTTTCTATT+AGG | + | chr1.1:29808282-29808301 | MS.gene53644:CDS | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | + | chr1.1:29809769-29809788 | MS.gene53644:CDS | 20.0% |
| !!! | TGATAAATTATTTTGATGGA+AGG | + | chr1.1:29809801-29809820 | MS.gene53644:CDS | 20.0% |
| !!! | TTAATTTCATTAAGTTGTTC+TGG | + | chr1.1:29809038-29809057 | MS.gene53644:intron | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | + | chr1.1:29809331-29809350 | MS.gene53644:intron | 20.0% |
| !!! | TTTAGTCTTTCAATCTATTA+AGG | + | chr1.1:29808229-29808248 | MS.gene53644:CDS | 20.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | + | chr1.1:29808331-29808350 | MS.gene53644:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr1.1:29808969-29808988 | MS.gene53644:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | - | chr1.1:29808995-29809014 | None:intergenic | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr1.1:29809462-29809481 | None:intergenic | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | + | chr1.1:29809192-29809211 | MS.gene53644:intron | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | + | chr1.1:29808920-29808939 | MS.gene53644:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr1.1:29809994-29810013 | MS.gene53644:CDS | 25.0% |
| ! | TCTTACTTATTTGAACTACA+CGG | + | chr1.1:29809114-29809133 | MS.gene53644:intron | 25.0% |
| ! | TTTAAGTCTGAAAACTGAAA+AGG | - | chr1.1:29808734-29808753 | None:intergenic | 25.0% |
| !! | AAGGAGATTGAAGATTTTTA+TGG | + | chr1.1:29808248-29808267 | MS.gene53644:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | + | chr1.1:29809417-29809436 | MS.gene53644:intron | 25.0% |
| !! | TTAACCATGTTGTTTGTTTA+GGG | + | chr1.1:29809139-29809158 | MS.gene53644:intron | 25.0% |
| !! | TTTAACCATGTTGTTTGTTT+AGG | + | chr1.1:29809138-29809157 | MS.gene53644:intron | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr1.1:29808882-29808901 | MS.gene53644:CDS | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | + | chr1.1:29809216-29809235 | MS.gene53644:intron | 25.0% |
| AAAACACCTGGAAAACTATT+CGG | - | chr1.1:29809635-29809654 | None:intergenic | 30.0% | |
| AAAAGTGAAAGAAAAACCTG+AGG | + | chr1.1:29808460-29808479 | MS.gene53644:CDS | 30.0% | |
| AAATCCCTAAACAAACAACA+TGG | - | chr1.1:29809146-29809165 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr1.1:29808377-29808396 | MS.gene53644:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr1.1:29808977-29808996 | MS.gene53644:CDS | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | - | chr1.1:29810131-29810150 | None:intergenic | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | + | chr1.1:29808365-29808384 | MS.gene53644:CDS | 30.0% | |
| CTTACTTATTTGAACTACAC+GGG | + | chr1.1:29809115-29809134 | MS.gene53644:intron | 30.0% | |
| GAATAAATGCAAAGCAAGAA+GGG | - | chr1.1:29810132-29810151 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | + | chr1.1:29809683-29809702 | MS.gene53644:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr1.1:29808973-29808992 | None:intergenic | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | + | chr1.1:29808402-29808421 | MS.gene53644:CDS | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | + | chr1.1:29809446-29809465 | MS.gene53644:intron | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr1.1:29808376-29808395 | MS.gene53644:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | chr1.1:29808541-29808560 | MS.gene53644:CDS | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | - | chr1.1:29809180-29809199 | None:intergenic | 30.0% | |
| TCCATGATTCTTTATTGCTA+GGG | - | chr1.1:29808205-29808224 | None:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | - | chr1.1:29810133-29810152 | None:intergenic | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | chr1.1:29808607-29808626 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | - | chr1.1:29808206-29808225 | None:intergenic | 30.0% | |
| TTTACAAACTCAATAACCTG+TGG | - | chr1.1:29808443-29808462 | None:intergenic | 30.0% | |
| ! | AGAACGTCTTATGAAGTTTT+GGG | + | chr1.1:29808680-29808699 | MS.gene53644:CDS | 30.0% |
| ! | ATTTAGTTTATGCATTGCTG+AGG | + | chr1.1:29809302-29809321 | MS.gene53644:intron | 30.0% |
| ! | TATTTCAATGCTTTTCTTCG+TGG | + | chr1.1:29809938-29809957 | MS.gene53644:CDS | 30.0% |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | chr1.1:29808647-29808666 | MS.gene53644:CDS | 30.0% |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | + | chr1.1:29809001-29809020 | MS.gene53644:intron | 30.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | - | chr1.1:29809576-29809595 | None:intergenic | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | + | chr1.1:29808769-29808788 | MS.gene53644:CDS | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr1.1:29810008-29810027 | MS.gene53644:CDS | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | - | chr1.1:29808838-29808857 | None:intergenic | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr1.1:29810009-29810028 | MS.gene53644:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | - | chr1.1:29808204-29808223 | None:intergenic | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr1.1:29808617-29808636 | MS.gene53644:CDS | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | + | chr1.1:29810134-29810153 | MS.gene53644:intron | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr1.1:29808466-29808485 | MS.gene53644:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | + | chr1.1:29808766-29808785 | MS.gene53644:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | - | chr1.1:29808837-29808856 | None:intergenic | 35.0% | |
| TAAAGAATCGAACAAGTGAG+TGG | - | chr1.1:29809979-29809998 | None:intergenic | 35.0% | |
| TAAGACCTATAGTCAATCCT+AGG | - | chr1.1:29809099-29809118 | None:intergenic | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr1.1:29808465-29808484 | MS.gene53644:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | + | chr1.1:29808499-29808518 | MS.gene53644:CDS | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | + | chr1.1:29809638-29809657 | MS.gene53644:CDS | 35.0% |
| ! | ATTTTCTCGCTTCTACCATT+TGG | + | chr1.1:29809162-29809181 | MS.gene53644:intron | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | - | chr1.1:29808578-29808597 | None:intergenic | 35.0% |
| ! | GAGAACGTCTTATGAAGTTT+TGG | + | chr1.1:29808679-29808698 | MS.gene53644:CDS | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | + | chr1.1:29809639-29809658 | MS.gene53644:CDS | 35.0% |
| ! | TCAATTCCGAATAGTTTTCC+AGG | + | chr1.1:29809626-29809645 | MS.gene53644:CDS | 35.0% |
| !!! | CATCGAAAGAGTGTTTTGTT+TGG | + | chr1.1:29809479-29809498 | MS.gene53644:CDS | 35.0% |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | + | chr1.1:29808890-29808909 | MS.gene53644:CDS | 35.0% |
| !!! | TCTTATGAAGTTTTGGGTCA+GGG | + | chr1.1:29808686-29808705 | MS.gene53644:CDS | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | + | chr1.1:29809651-29809670 | MS.gene53644:CDS | 35.0% |
| AACTGCCTAGGATTGACTAT+AGG | + | chr1.1:29809091-29809110 | MS.gene53644:intron | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | + | chr1.1:29809586-29809605 | MS.gene53644:CDS | 40.0% | |
| ACATCAACTTCATCTGAGAG+TGG | + | chr1.1:29808077-29808096 | MS.gene53644:CDS | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | + | chr1.1:29808201-29808220 | MS.gene53644:CDS | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | + | chr1.1:29809855-29809874 | MS.gene53644:CDS | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | - | chr1.1:29809853-29809872 | None:intergenic | 40.0% | |
| GTCAGCATGAATCATTGCTA+GGG | - | chr1.1:29808165-29808184 | None:intergenic | 40.0% | |
| TCACACAAGACAAAATGCCT+AGG | - | chr1.1:29809236-29809255 | None:intergenic | 40.0% | |
| TCAGCATGAATCATTGCTAG+GGG | - | chr1.1:29808164-29808183 | None:intergenic | 40.0% | |
| TGGTCTGTATAAATCGTCTG+TGG | - | chr1.1:29809587-29809606 | None:intergenic | 40.0% | |
| TGTCAGCATGAATCATTGCT+AGG | - | chr1.1:29808166-29808185 | None:intergenic | 40.0% | |
| ! | AGGGGTGTACTTGTTTACAA+CGG | - | chr1.1:29810113-29810132 | None:intergenic | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | + | chr1.1:29809079-29809098 | MS.gene53644:intron | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | + | chr1.1:29809890-29809909 | MS.gene53644:CDS | 40.0% |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr1.1:29810036-29810055 | MS.gene53644:CDS | 40.0% |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr1.1:29809868-29809887 | MS.gene53644:CDS | 40.0% |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | + | chr1.1:29809522-29809541 | MS.gene53644:CDS | 40.0% |
| !!! | GTCTTATGAAGTTTTGGGTC+AGG | + | chr1.1:29808685-29808704 | MS.gene53644:CDS | 40.0% |
| AACACAATAACGCACTAGCC+TGG | - | chr1.1:29809607-29809626 | None:intergenic | 45.0% | |
| AATCGAACAAGTGAGTGGTC+TGG | - | chr1.1:29809974-29809993 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | - | chr1.1:29809647-29809666 | None:intergenic | 45.0% | |
| CTAAGGTAACACGAATGCTC+TGG | - | chr1.1:29808590-29808609 | None:intergenic | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr1.1:29808470-29808489 | MS.gene53644:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr1.1:29810027-29810046 | MS.gene53644:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr1.1:29808479-29808498 | None:intergenic | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | + | chr1.1:29808773-29808792 | MS.gene53644:CDS | 45.0% |
| ! | TCTGTTGTTGGCCTGTTGTT+AGG | - | chr1.1:29808416-29808435 | None:intergenic | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr1.1:29808482-29808501 | MS.gene53644:CDS | 45.0% |
| !! | GTATGCATTGGTCTTCAGCT+TGG | + | chr1.1:29809867-29809886 | MS.gene53644:CDS | 45.0% |
| !! | TCACTGATTCATGCTGAGAG+TGG | + | chr1.1:29808122-29808141 | MS.gene53644:CDS | 45.0% |
| ATCCCAACAGTCAGCTGATG+CGG | + | chr1.1:29810086-29810105 | MS.gene53644:CDS | 50.0% | |
| GAAGGCCTACCTCAGACTTT+AGG | + | chr1.1:29809819-29809838 | MS.gene53644:CDS | 50.0% | |
| GACAAGCCACCTAAAGTCTG+AGG | - | chr1.1:29809831-29809850 | None:intergenic | 50.0% | |
| ! | ACCTGTGGACTGTCTGTTGT+TGG | - | chr1.1:29808428-29808447 | None:intergenic | 50.0% |
| ! | AGCCACCTAAAGTCTGAGGT+AGG | - | chr1.1:29809827-29809846 | None:intergenic | 50.0% |
| !! | TGGGCTTTGTTCATGGCACA+TGG | + | chr1.1:29809658-29809677 | MS.gene53644:CDS | 50.0% |
| !!! | GAAGTTTTGGGTCAGGGAGT+TGG | + | chr1.1:29808692-29808711 | MS.gene53644:CDS | 50.0% |
| GACCGCATCAGCTGACTGTT+GGG | - | chr1.1:29810091-29810110 | None:intergenic | 55.0% | |
| GCCAACAACAGACAGTCCAC+AGG | + | chr1.1:29808424-29808443 | MS.gene53644:CDS | 55.0% | |
| GGCCTACCTCAGACTTTAGG+TGG | + | chr1.1:29809822-29809841 | MS.gene53644:CDS | 55.0% | |
| !! | GTTTTGGGTCAGGGAGTTGG+AGG | + | chr1.1:29808695-29808714 | MS.gene53644:CDS | 55.0% |
| GGACCGCATCAGCTGACTGT+TGG | - | chr1.1:29810092-29810111 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 29808068 | 29810164 | 29808068 | ID=MS.gene53644 |
| chr1.1 | mRNA | 29808068 | 29810164 | 29808068 | ID=MS.gene53644.t1;Parent=MS.gene53644 |
| chr1.1 | exon | 29808068 | 29808998 | 29808068 | ID=MS.gene53644.t1.exon1;Parent=MS.gene53644.t1 |
| chr1.1 | CDS | 29808068 | 29808998 | 29808068 | ID=cds.MS.gene53644.t1;Parent=MS.gene53644.t1 |
| chr1.1 | exon | 29809456 | 29810114 | 29809456 | ID=MS.gene53644.t1.exon2;Parent=MS.gene53644.t1 |
| chr1.1 | CDS | 29809456 | 29810114 | 29809456 | ID=cds.MS.gene53644.t1;Parent=MS.gene53644.t1 |
| chr1.1 | exon | 29810156 | 29810164 | 29810156 | ID=MS.gene53644.t1.exon3;Parent=MS.gene53644.t1 |
| chr1.1 | CDS | 29810156 | 29810164 | 29810156 | ID=cds.MS.gene53644.t1;Parent=MS.gene53644.t1 |
| Gene Sequence |
| Protein sequence |
