AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53687

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53687.t1 MTR_1g047550 97.207 179 5 0 1 179 1 179 1.77e-128 358
MS.gene53687.t1 MTR_8g079502 86.228 167 23 0 1 167 1 167 5.83e-106 301
MS.gene53687.t1 MTR_1g063160 78.771 179 38 0 1 179 1 179 4.18e-100 286
MS.gene53687.t1 MTR_4g131030 76.064 188 28 1 1 171 1 188 2.11e-99 286
MS.gene53687.t1 MTR_1g054265 78.571 168 36 0 1 168 1 168 5.17e-93 268
MS.gene53687.t1 MTR_8g051580 59.429 175 71 0 1 175 1 175 2.58e-72 216
MS.gene53687.t1 MTR_8g046350 57.143 168 66 2 1 168 1 162 1.64e-61 188
MS.gene53687.t1 MTR_4g094632 40.244 164 86 3 1 164 1 152 5.45e-32 113
MS.gene53687.t1 MTR_3g080940 38.816 152 81 2 1 140 8 159 1.10e-27 103
MS.gene53687.t1 MTR_3g052870 42.029 138 77 2 2 136 9 146 1.15e-27 103
MS.gene53687.t1 MTR_4g094638 41.958 143 78 3 1 140 1 141 5.00e-27 100
MS.gene53687.t1 MTR_1g106070 43.333 120 66 1 2 119 9 128 1.30e-26 100
MS.gene53687.t1 MTR_3g052920 60.870 69 27 0 2 70 9 77 3.26e-25 97.8
MS.gene53687.t1 MTR_1g105920 62.319 69 26 0 2 70 9 77 4.57e-25 97.4
MS.gene53687.t1 MTR_5g045560 35.714 168 88 4 1 152 8 171 5.24e-25 97.1
MS.gene53687.t1 MTR_1g077360 46.535 101 52 1 2 100 9 109 8.72e-25 96.7
MS.gene53687.t1 MTR_2g105290 40.310 129 66 3 1 129 11 128 1.02e-24 94.7
MS.gene53687.t1 MTR_2g030740 60.870 69 27 0 2 70 9 77 5.11e-24 94.7
MS.gene53687.t1 MTR_1g105910 60.870 69 27 0 2 70 9 77 5.38e-24 94.7
MS.gene53687.t1 MTR_8g086290 40.260 154 70 5 2 140 12 158 1.03e-23 92.4
MS.gene53687.t1 MTR_1g012570 43.243 111 60 2 2 110 9 118 1.04e-23 94.0
MS.gene53687.t1 MTR_8g043650 59.420 69 28 0 2 70 9 77 1.36e-23 93.6
MS.gene53687.t1 MTR_1g075600 57.746 71 30 0 2 72 9 79 2.74e-23 92.8
MS.gene53687.t1 MTR_3g030770 57.971 69 29 0 2 70 9 77 3.18e-23 92.4
MS.gene53687.t1 MTR_5g053390 53.247 77 36 0 2 78 9 85 3.68e-23 92.4
MS.gene53687.t1 MTR_1g108510 57.971 69 29 0 2 70 9 77 3.84e-23 92.0
MS.gene53687.t1 MTR_0121s0100 56.522 69 30 0 2 70 9 77 9.35e-23 88.6
MS.gene53687.t1 MTR_3g030780 43.243 111 59 2 2 109 9 118 1.82e-22 87.8
MS.gene53687.t1 MTR_1g108580 55.072 69 31 0 2 70 9 77 7.39e-22 88.6
MS.gene53687.t1 MTR_7g028448 38.931 131 66 3 17 140 27 150 1.05e-21 87.0
MS.gene53687.t1 MTR_4g036915 38.931 131 66 3 17 140 27 150 1.05e-21 87.0
MS.gene53687.t1 MTR_2g093190 56.522 69 30 0 2 70 9 77 1.42e-21 87.8
MS.gene53687.t1 MTR_5g055100 49.351 77 39 0 2 78 9 85 1.89e-21 87.8
MS.gene53687.t1 MTR_0121s0080 42.017 119 66 2 2 118 9 126 2.20e-21 87.8
MS.gene53687.t1 MTR_2g085280 53.623 69 32 0 2 70 9 77 2.26e-21 87.8
MS.gene53687.t1 MTR_2g085250 53.623 69 32 0 2 70 9 77 2.36e-21 87.4
MS.gene53687.t1 MTR_8g087860 35.404 161 92 4 1 161 17 165 1.39e-20 85.9
MS.gene53687.t1 MTR_1g105905 40.157 127 58 3 18 142 8 118 3.97e-20 84.0
MS.gene53687.t1 MTR_0003s0590 42.202 109 55 2 1 102 1 108 6.79e-20 84.0
MS.gene53687.t1 MTR_5g021270 51.613 62 30 0 1 62 1 62 1.61e-18 80.1
MS.gene53687.t1 MTR_5g021270 51.613 62 30 0 1 62 1 62 1.64e-18 80.1
MS.gene53687.t1 MTR_2g017865 42.308 104 57 1 1 104 16 116 2.23e-18 80.1
MS.gene53687.t1 MTR_3g005530 34.783 161 93 4 1 161 1 149 2.53e-18 79.3
MS.gene53687.t1 MTR_3g452380 47.126 87 44 1 1 87 16 100 3.40e-18 79.3
MS.gene53687.t1 MTR_7g062350 57.377 61 26 0 10 70 29 89 3.85e-18 79.3
MS.gene53687.t1 MTR_4g127140 50.000 80 40 0 1 80 11 90 3.92e-18 78.2
MS.gene53687.t1 MTR_1g053070 50.725 69 34 0 1 69 1 69 6.57e-18 78.6
MS.gene53687.t1 MTR_7g075870 39.423 104 60 1 1 104 1 101 1.50e-17 77.0
MS.gene53687.t1 MTR_5g066180 48.611 72 37 0 1 72 1 72 1.69e-17 77.0
MS.gene53687.t1 MTR_2g009890 39.091 110 66 1 1 110 1 109 5.98e-17 76.6
MS.gene53687.t1 MTR_8g033270 49.275 69 35 0 1 69 1 69 6.42e-17 76.3
MS.gene53687.t1 MTR_5g066960 53.333 60 28 0 1 60 1 60 1.39e-16 70.5
MS.gene53687.t1 MTR_3g067875 60.417 48 19 0 18 65 8 55 1.93e-16 70.5
MS.gene53687.t1 MTR_8g033220 49.275 69 35 0 1 69 1 69 3.75e-16 73.6
MS.gene53687.t1 MTR_1g108500 65.957 47 16 0 18 64 113 159 3.80e-16 75.1
MS.gene53687.t1 MTR_8g033220 49.275 69 35 0 1 69 1 69 3.95e-16 73.6
MS.gene53687.t1 MTR_7g075870 39.048 105 60 2 1 104 1 102 5.85e-16 72.8
MS.gene53687.t1 MTR_1g101970 46.479 71 38 0 1 71 1 71 6.05e-16 72.4
MS.gene53687.t1 MTR_5g031000 36.090 133 73 4 1 129 1 125 7.41e-16 73.2
MS.gene53687.t1 MTR_5g031000 36.090 133 73 4 1 129 1 125 7.55e-16 72.8
MS.gene53687.t1 MTR_3g067910 52.727 55 26 0 18 72 6 60 7.65e-16 70.1
MS.gene53687.t1 MTR_4g102530 46.377 69 37 0 1 69 1 69 1.32e-15 71.6
MS.gene53687.t1 MTR_1g038300 46.479 71 36 1 1 69 1 71 1.99e-15 71.6
MS.gene53687.t1 MTR_2g461710 50.877 57 28 0 1 57 1 57 2.40e-15 67.4
MS.gene53687.t1 MTR_4g093970 47.692 65 34 0 1 65 27 91 4.16e-15 70.9
MS.gene53687.t1 MTR_4g109810 33.588 131 72 3 1 116 1 131 4.42e-15 70.9
MS.gene53687.t1 MTR_5g046870 52.632 57 27 0 1 57 1 57 8.24e-15 67.4
MS.gene53687.t1 MTR_7g016630 35.417 96 56 2 1 90 1 96 8.77e-15 70.5
MS.gene53687.t1 MTR_8g066260 37.624 101 49 2 1 90 1 98 8.91e-15 70.1
MS.gene53687.t1 MTR_5g046790 49.123 57 29 0 1 57 1 57 1.01e-14 69.3
MS.gene53687.t1 MTR_7g016600 52.632 57 27 0 1 57 1 57 1.14e-14 70.1
MS.gene53687.t1 MTR_3g113030 46.875 64 34 0 1 64 1 64 1.52e-14 69.3
MS.gene53687.t1 MTR_4g109830 41.429 70 40 1 1 69 1 70 2.01e-14 68.9
MS.gene53687.t1 MTR_3g084980 54.386 57 26 0 1 57 1 57 3.13e-14 68.6
MS.gene53687.t1 MTR_5g032150 50.877 57 28 0 1 57 1 57 3.24e-14 68.6
MS.gene53687.t1 MTR_3g102570 45.070 71 38 1 1 70 1 71 3.26e-14 69.3
MS.gene53687.t1 MTR_5g032520 50.877 57 28 0 1 57 1 57 3.55e-14 68.2
MS.gene53687.t1 MTR_8g097090 52.632 57 27 0 1 57 1 57 4.02e-14 68.6
MS.gene53687.t1 MTR_4g093030 54.386 57 26 0 1 57 1 57 4.03e-14 66.6
MS.gene53687.t1 MTR_4g084740 47.887 71 36 1 1 70 1 71 4.35e-14 69.3
MS.gene53687.t1 MTR_1g029670 38.462 65 40 0 1 65 1 65 4.80e-14 67.0
MS.gene53687.t1 MTR_1g041615 68.182 44 14 0 15 58 19 62 5.00e-14 65.9
MS.gene53687.t1 MTR_6g015975 52.632 57 27 0 1 57 1 57 5.53e-14 68.2
MS.gene53687.t1 MTR_3g088615 40.000 65 39 0 1 65 1 65 6.54e-14 66.6
MS.gene53687.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 7.03e-14 66.6
MS.gene53687.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 7.21e-14 67.0
MS.gene53687.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 7.87e-14 66.2
MS.gene53687.t1 MTR_4g036050 44.444 72 39 1 1 71 1 72 8.04e-14 66.6
MS.gene53687.t1 MTR_3g109930 31.250 144 79 4 11 152 11 136 1.03e-13 66.2
MS.gene53687.t1 MTR_7g075850 57.143 49 21 0 1 49 1 49 3.35e-13 65.9
MS.gene53687.t1 MTR_6g464720 36.364 99 59 2 1 95 1 99 4.87e-13 65.5
MS.gene53687.t1 MTR_3g067870 50.000 52 26 0 18 69 92 143 1.34e-12 62.8
MS.gene53687.t1 MTR_5g041650 48.148 54 28 0 1 54 38 91 1.50e-12 65.1
MS.gene53687.t1 MTR_8g022970 35.246 122 67 2 3 120 19 132 2.27e-12 62.8
MS.gene53687.t1 MTR_3g437790 33.019 106 62 2 19 115 30 135 1.46e-11 60.5
MS.gene53687.t1 MTR_4g108720 46.296 54 29 0 1 54 1 54 3.01e-11 61.2
MS.gene53687.t1 MTR_6g018920 40.000 60 36 0 1 60 1 60 6.53e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53687.t1 AT2G34440 44.444 171 83 5 1 160 1 170 3.68e-38 129
MS.gene53687.t1 AT2G24840 36.527 167 85 3 1 150 62 224 1.11e-31 115
MS.gene53687.t1 AT3G66656 49.565 115 53 1 1 110 1 115 1.19e-31 112
MS.gene53687.t1 AT5G60440 37.580 157 79 2 2 154 7 148 6.19e-27 103
MS.gene53687.t1 AT1G01530 40.288 139 79 2 1 139 6 140 9.93e-24 94.0
MS.gene53687.t1 AT3G57230 33.544 158 92 3 1 158 1 145 5.20e-22 87.0
MS.gene53687.t1 AT3G57230 33.333 165 97 3 1 165 1 152 6.44e-21 86.7
MS.gene53687.t1 AT3G57230 33.333 165 97 3 1 165 1 152 6.44e-21 86.7
MS.gene53687.t1 AT5G13790 45.545 101 43 2 1 100 1 90 1.14e-20 86.7
MS.gene53687.t1 AT4G36590 33.333 174 78 4 2 160 7 157 1.16e-20 85.9
MS.gene53687.t1 AT1G65360 36.607 112 71 0 1 112 6 117 1.93e-20 85.1
MS.gene53687.t1 AT1G47760 42.000 100 46 2 1 100 1 88 4.73e-20 83.2
MS.gene53687.t1 AT1G72350 57.746 71 28 1 2 72 43 111 1.81e-19 82.4
MS.gene53687.t1 AT5G13790 46.753 77 41 0 1 77 1 77 2.57e-19 82.8
MS.gene53687.t1 AT4G09960 33.540 161 95 4 1 161 2 150 3.65e-19 81.6
MS.gene53687.t1 AT4G09960 33.540 161 95 4 1 161 1 149 3.74e-19 81.6
MS.gene53687.t1 AT4G09960 33.540 161 95 4 1 161 11 159 5.41e-19 81.6
MS.gene53687.t1 AT4G09960 33.540 161 95 4 1 161 27 175 5.62e-19 81.6
MS.gene53687.t1 AT3G57390 52.174 69 33 0 1 69 1 69 6.65e-19 80.9
MS.gene53687.t1 AT3G61120 50.725 69 34 0 1 69 1 69 8.59e-19 80.9
MS.gene53687.t1 AT4G09960 45.570 79 43 0 1 79 1 79 1.26e-18 80.1
MS.gene53687.t1 AT3G57390 52.174 69 33 0 1 69 1 69 1.36e-18 80.9
MS.gene53687.t1 AT4G09960 45.570 79 43 0 1 79 96 174 3.73e-18 80.5
MS.gene53687.t1 AT3G04100 36.620 142 67 4 2 138 14 137 3.79e-18 78.6
MS.gene53687.t1 AT2G45660 37.963 108 64 2 1 108 1 105 4.00e-18 77.4
MS.gene53687.t1 AT2G22630 50.725 69 34 0 1 69 1 69 7.57e-18 78.2
MS.gene53687.t1 AT2G22630 50.725 69 34 0 1 69 1 69 7.57e-18 78.2
MS.gene53687.t1 AT3G58780 37.879 132 77 2 1 132 22 148 8.21e-18 78.6
MS.gene53687.t1 AT1G28460 32.903 155 89 3 2 141 8 162 8.60e-18 77.0
MS.gene53687.t1 AT4G22950 49.275 69 35 0 1 69 1 69 8.69e-18 76.6
MS.gene53687.t1 AT3G58780 37.879 132 77 2 1 132 16 142 9.15e-18 78.2
MS.gene53687.t1 AT1G29962 46.575 73 39 0 2 74 8 80 1.35e-17 76.6
MS.gene53687.t1 AT2G45660 37.963 108 64 2 1 108 1 105 1.45e-17 77.0
MS.gene53687.t1 AT3G58780 37.879 132 77 2 1 132 16 142 1.57e-17 78.2
MS.gene53687.t1 AT5G51870 35.075 134 79 3 1 132 1 128 1.59e-17 76.3
MS.gene53687.t1 AT5G51860 32.099 162 106 2 1 162 1 158 2.21e-17 76.3
MS.gene53687.t1 AT5G51860 32.099 162 106 2 1 162 1 158 2.39e-17 76.6
MS.gene53687.t1 AT2G42830 39.623 106 61 1 1 106 16 118 2.49e-17 77.0
MS.gene53687.t1 AT5G51870 35.075 134 79 3 1 132 24 151 2.54e-17 76.3
MS.gene53687.t1 AT4G37940 50.725 69 34 0 1 69 1 69 2.57e-17 76.6
MS.gene53687.t1 AT2G42830 39.623 106 61 1 1 106 16 118 2.74e-17 77.0
MS.gene53687.t1 AT2G45650 49.275 69 35 0 1 69 1 69 2.90e-17 77.0
MS.gene53687.t1 AT4G37940 50.725 69 34 0 1 69 1 69 3.31e-17 76.3
MS.gene53687.t1 AT5G65070 44.737 76 41 1 1 75 1 76 3.52e-17 74.7
MS.gene53687.t1 AT3G58780 45.977 87 34 1 1 74 16 102 3.77e-17 76.6
MS.gene53687.t1 AT4G37940 34.667 150 90 4 1 149 1 143 4.76e-17 75.1
MS.gene53687.t1 AT5G51870 35.075 134 79 3 1 132 1 128 4.77e-17 75.5
MS.gene53687.t1 AT5G10140 43.000 100 51 3 1 95 1 99 6.13e-17 74.3
MS.gene53687.t1 AT5G51870 35.075 134 79 3 1 132 1 128 6.40e-17 75.5
MS.gene53687.t1 AT5G65070 44.737 76 41 1 1 75 1 76 6.45e-17 75.1
MS.gene53687.t1 AT4G22950 49.275 69 35 0 1 69 1 69 8.83e-17 75.1
MS.gene53687.t1 AT4G22950 49.275 69 35 0 1 69 1 69 8.83e-17 75.1
MS.gene53687.t1 AT5G10140 43.000 100 51 3 1 95 1 99 8.97e-17 74.3
MS.gene53687.t1 AT5G51870 35.075 134 79 3 1 132 11 138 1.06e-16 75.1
MS.gene53687.t1 AT5G62165 37.500 104 62 2 1 104 1 101 1.10e-16 73.6
MS.gene53687.t1 AT5G62165 37.500 104 62 2 1 104 1 101 1.10e-16 73.6
MS.gene53687.t1 AT5G62165 37.500 104 62 2 1 104 1 101 1.10e-16 73.6
MS.gene53687.t1 AT5G10140 48.052 77 37 2 1 75 1 76 1.42e-16 73.9
MS.gene53687.t1 AT4G18960 37.615 109 68 0 2 110 18 126 1.45e-16 75.1
MS.gene53687.t1 AT5G62165 37.500 104 62 2 1 104 1 101 1.51e-16 73.2
MS.gene53687.t1 AT5G62165 37.500 104 62 2 1 104 1 101 1.51e-16 73.2
MS.gene53687.t1 AT5G62165 37.500 104 62 2 1 104 1 101 1.51e-16 73.2
MS.gene53687.t1 AT5G62165 37.500 104 62 2 1 104 1 101 1.51e-16 73.2
MS.gene53687.t1 AT5G62165 37.500 104 62 2 1 104 1 101 1.51e-16 73.2
MS.gene53687.t1 AT5G10140 48.052 77 37 2 1 75 1 76 1.85e-16 73.9
MS.gene53687.t1 AT5G65070 44.737 76 41 1 1 75 1 76 2.36e-16 74.3
MS.gene53687.t1 AT4G24540 38.947 95 57 1 1 95 1 94 2.97e-16 73.9
MS.gene53687.t1 AT5G65070 44.737 76 41 1 1 75 1 76 4.18e-16 73.2
MS.gene53687.t1 AT5G62165 35.577 104 64 1 1 104 1 101 4.85e-16 72.8
MS.gene53687.t1 AT5G62165 35.577 104 64 1 1 104 1 101 4.85e-16 72.8
MS.gene53687.t1 AT1G77980 50.704 71 34 1 1 70 1 71 4.88e-16 74.7
MS.gene53687.t1 AT5G65070 50.769 65 30 1 1 63 1 65 4.93e-16 73.6
MS.gene53687.t1 AT5G62165 37.500 104 62 2 1 104 1 101 5.31e-16 72.8
MS.gene53687.t1 AT5G62165 37.500 104 62 2 1 104 1 101 5.31e-16 72.8
MS.gene53687.t1 AT5G62165 37.500 104 62 2 1 104 1 101 5.31e-16 72.8
MS.gene53687.t1 AT1G17310 48.148 81 35 2 17 92 63 141 6.09e-16 72.8
MS.gene53687.t1 AT4G11880 40.351 114 62 3 1 108 1 114 6.51e-16 72.0
MS.gene53687.t1 AT4G11880 40.351 114 62 3 1 108 1 114 6.51e-16 72.0
MS.gene53687.t1 AT5G20240 46.970 66 35 0 1 66 1 66 7.25e-16 71.2
MS.gene53687.t1 AT1G17310 48.148 81 35 2 17 92 74 152 8.99e-16 72.8
MS.gene53687.t1 AT5G62165 41.667 84 45 1 1 80 1 84 1.06e-15 69.7
MS.gene53687.t1 AT5G20240 46.970 66 35 0 1 66 1 66 1.33e-15 71.6
MS.gene53687.t1 AT2G22540 46.377 69 37 0 1 69 1 69 1.36e-15 72.4
MS.gene53687.t1 AT2G22540 46.377 69 37 0 1 69 1 69 1.36e-15 72.4
MS.gene53687.t1 AT1G71692 37.113 97 60 1 1 96 1 97 1.42e-15 71.6
MS.gene53687.t1 AT3G54340 30.270 185 105 5 1 167 1 179 1.58e-15 72.0
MS.gene53687.t1 AT1G22130 49.296 71 35 1 1 70 1 71 1.61e-15 73.2
MS.gene53687.t1 AT3G58780 55.932 59 26 0 1 59 16 74 2.04e-15 72.4
MS.gene53687.t1 AT2G14210 55.172 58 26 0 1 58 1 58 2.36e-15 71.6
MS.gene53687.t1 AT2G14210 55.172 58 26 0 1 58 1 58 2.76e-15 71.6
MS.gene53687.t1 AT4G11880 55.172 58 26 0 1 58 1 58 3.33e-15 70.9
MS.gene53687.t1 AT4G11880 55.172 58 26 0 1 58 1 58 3.33e-15 70.9
MS.gene53687.t1 AT1G77950 35.542 166 89 7 1 151 1 163 4.70e-15 71.2
MS.gene53687.t1 AT1G77950 35.542 166 89 7 1 151 1 163 4.70e-15 71.2
MS.gene53687.t1 AT1G77950 35.542 166 89 7 1 151 1 163 4.70e-15 71.2
MS.gene53687.t1 AT1G77950 35.542 166 89 7 1 151 1 163 4.70e-15 71.2
MS.gene53687.t1 AT3G30260 38.235 102 53 3 1 93 1 101 6.61e-15 70.5
MS.gene53687.t1 AT1G24260 38.776 98 55 1 1 98 1 93 8.65e-15 70.5
MS.gene53687.t1 AT2G03710 32.335 167 99 5 1 158 1 162 9.13e-15 69.3
MS.gene53687.t1 AT5G65080 42.857 77 42 1 1 75 8 84 9.41e-15 69.3
MS.gene53687.t1 AT1G24260 38.776 98 55 1 1 98 1 93 1.21e-14 69.7
MS.gene53687.t1 AT2G22540 52.632 57 27 0 1 57 1 57 1.31e-14 69.7
MS.gene53687.t1 AT1G26310 50.000 58 29 0 1 58 1 58 2.69e-14 68.9
MS.gene53687.t1 AT5G15800 52.632 57 27 0 1 57 1 57 3.00e-14 68.9
MS.gene53687.t1 AT5G23260 63.265 49 18 0 1 49 1 49 3.04e-14 68.6
MS.gene53687.t1 AT5G23260 63.265 49 18 0 1 49 1 49 3.06e-14 68.9
MS.gene53687.t1 AT3G02310 52.632 57 27 0 1 57 1 57 3.26e-14 67.8
MS.gene53687.t1 AT5G23260 63.265 49 18 0 1 49 17 65 3.43e-14 68.9
MS.gene53687.t1 AT5G23260 63.265 49 18 0 1 49 17 65 3.49e-14 68.9
MS.gene53687.t1 AT1G69120 50.000 58 29 0 1 58 1 58 3.76e-14 68.6
MS.gene53687.t1 AT5G65050 50.909 55 27 0 1 55 1 55 4.02e-14 67.4
MS.gene53687.t1 AT5G65060 52.727 55 26 0 1 55 1 55 4.12e-14 67.4
MS.gene53687.t1 AT5G15800 52.632 57 27 0 1 57 1 57 4.50e-14 68.6
MS.gene53687.t1 AT2G03710 52.632 57 27 0 1 57 1 57 4.67e-14 68.6
MS.gene53687.t1 AT5G60910 49.123 57 29 0 1 57 1 57 4.71e-14 68.2
MS.gene53687.t1 AT2G03710 52.632 57 27 0 1 57 1 57 4.81e-14 68.6
MS.gene53687.t1 AT1G28450 32.927 164 88 5 2 146 8 168 5.17e-14 67.0
MS.gene53687.t1 AT1G46408 50.000 76 32 3 1 70 1 76 6.47e-14 68.2
MS.gene53687.t1 AT1G24260 52.632 57 27 0 1 57 1 57 6.95e-14 67.8
MS.gene53687.t1 AT5G65060 52.727 55 26 0 1 55 1 55 6.98e-14 66.6
MS.gene53687.t1 AT3G02310 52.632 57 27 0 1 57 1 57 7.02e-14 67.8
MS.gene53687.t1 AT5G65060 52.727 55 26 0 1 55 1 55 7.59e-14 67.0
MS.gene53687.t1 AT1G69120 50.000 58 29 0 1 58 1 58 7.73e-14 67.8
MS.gene53687.t1 AT5G65080 50.000 56 28 0 1 56 8 63 9.68e-14 66.6
MS.gene53687.t1 AT5G65050 50.909 55 27 0 1 55 1 55 1.34e-13 66.2
MS.gene53687.t1 AT5G65050 50.909 55 27 0 1 55 1 55 1.39e-13 65.9
MS.gene53687.t1 AT5G65050 50.909 55 27 0 1 55 1 55 1.50e-13 65.9
MS.gene53687.t1 AT1G69540 44.444 72 39 1 1 71 1 72 1.34e-12 65.1
MS.gene53687.t1 AT1G18750 41.096 73 41 1 1 71 1 73 1.61e-12 65.1
MS.gene53687.t1 AT1G69540 44.444 72 39 1 1 71 1 72 1.74e-12 64.7
MS.gene53687.t1 AT1G18750 41.096 73 41 1 1 71 1 73 1.77e-12 65.1
MS.gene53687.t1 AT1G18750 41.096 73 41 1 1 71 1 73 1.77e-12 65.1
MS.gene53687.t1 AT4G37435 26.738 187 96 5 1 156 1 177 6.64e-12 61.6
MS.gene53687.t1 AT5G04640 39.241 79 42 2 1 73 1 79 1.04e-11 62.4
MS.gene53687.t1 AT2G03060 52.000 50 24 0 1 50 1 50 1.21e-11 62.4
MS.gene53687.t1 AT2G03060 52.000 50 24 0 1 50 1 50 1.21e-11 62.4
MS.gene53687.t1 AT2G03060 52.000 50 24 0 1 50 1 50 1.21e-11 62.4
MS.gene53687.t1 AT2G03060 52.000 50 24 0 1 50 1 50 1.33e-11 62.4
MS.gene53687.t1 AT5G49490 41.667 72 38 1 3 70 46 117 1.85e-11 61.6
MS.gene53687.t1 AT2G26320 32.143 84 51 1 1 78 17 100 3.88e-11 57.8
MS.gene53687.t1 AT1G77080 66.667 39 13 0 1 39 1 39 5.11e-11 58.9
MS.gene53687.t1 AT1G77080 66.667 39 13 0 1 39 1 39 5.12e-11 58.9
MS.gene53687.t1 AT5G38620 40.278 72 39 1 3 70 6 77 6.14e-11 60.5
MS.gene53687.t1 AT5G49420 40.278 72 39 1 3 70 8 79 6.19e-11 60.5
MS.gene53687.t1 AT1G77080 66.667 39 13 0 1 39 1 39 9.68e-11 57.8

Find 33 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTTGCATCAGCCTCTTGC+TGG 0.304300 1.3:-29330638 None:intergenic
GGTGATAGACCTTACTCTTT+TGG 0.312324 1.3:+29330579 MS.gene53687:CDS
TAAAAGCGAAATCTGCAAAA+AGG 0.347726 1.3:+29330928 MS.gene53687:CDS
GACTTCTGCTCCGCACAAAA+TGG 0.371305 1.3:-29330535 None:intergenic
AATGTAACTTGCCTCGTGTT+AGG 0.379732 1.3:-29330468 None:intergenic
CAGAATCTCATCATGATTCT+CGG 0.389581 1.3:-29330760 None:intergenic
CATCAGAAGATGGGTTTCCT+TGG 0.395024 1.3:-29330665 None:intergenic
ACATTCTCAAAGCGTCGAAC+GGG 0.411690 1.3:+29330486 MS.gene53687:CDS
CATACAAAGAGCTTCAAGAT+TGG 0.419220 1.3:+29330832 MS.gene53687:CDS
ATACAAAGAGCTTCAAGATT+GGG 0.435727 1.3:+29330833 MS.gene53687:CDS
TATTCCCACCACTGGTTCCT+CGG 0.454722 1.3:-29330907 None:intergenic
ATCAGAAGATGGGTTTCCTT+GGG 0.455461 1.3:-29330664 None:intergenic
ATCTTGGGAGCATCAGAAGA+TGG 0.459721 1.3:-29330675 None:intergenic
AGCCTCTTGCTGGAGATACT+TGG 0.471599 1.3:-29330628 None:intergenic
GCTGCAACAACGTCAACACC+TGG 0.475787 1.3:-29330606 None:intergenic
GCTATTGTTGTGTTCTCTCC+CGG 0.488473 1.3:+29330558 MS.gene53687:CDS
TACATTCTCAAAGCGTCGAA+CGG 0.497566 1.3:+29330485 MS.gene53687:CDS
ATCTTCTGATGCTCCCAAGA+TGG 0.505264 1.3:+29330677 MS.gene53687:CDS
CCTGGGTGGCCAAAAGAGTA+AGG 0.507377 1.3:-29330588 None:intergenic
TCTTGGGAGCATCAGAAGAT+GGG 0.537493 1.3:-29330674 None:intergenic
TCTTGCCGAGGAACCAGTGG+TGG 0.550244 1.3:+29330902 MS.gene53687:CDS
AAAAGAGTAAGGTCTATCAC+CGG 0.577324 1.3:-29330577 None:intergenic
GTATATGATGCTTCTTGCCG+AGG 0.597387 1.3:+29330890 MS.gene53687:CDS
GAATCATGATGAGATTCTGA+AGG 0.612338 1.3:+29330764 MS.gene53687:CDS
AAAGAGTAAGGTCTATCACC+GGG 0.631505 1.3:-29330576 None:intergenic
AGCCAAGTATCTCCAGCAAG+AGG 0.636118 1.3:+29330626 MS.gene53687:CDS
CTGCAACAACGTCAACACCT+GGG 0.651193 1.3:-29330605 None:intergenic
GCTTCTTGCCGAGGAACCAG+TGG 0.653246 1.3:+29330899 MS.gene53687:CDS
CTTGCCGAGGAACCAGTGGT+GGG 0.657410 1.3:+29330903 MS.gene53687:CDS
GCTGATGCAAGCGATTCCCA+AGG 0.659023 1.3:+29330648 MS.gene53687:CDS
ATACTGACACAAATTCGAGA+AGG 0.659731 1.3:+29330726 MS.gene53687:CDS
CAACAACGTCAACACCTGGG+TGG 0.693277 1.3:-29330602 None:intergenic
TCGTGAAAGATCCTAACACG+AGG 0.747347 1.3:+29330457 MS.gene53687:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTAATTTTTCCATCTT+GGG - chr1.3:29330693-29330712 None:intergenic 20.0%
!!! TAGATTTAATTTTTCCATCT+TGG - chr1.3:29330694-29330713 None:intergenic 20.0%
ATACAAAGAGCTTCAAGATT+GGG + chr1.3:29330833-29330852 MS.gene53687:CDS 30.0%
TAAAAGCGAAATCTGCAAAA+AGG + chr1.3:29330928-29330947 MS.gene53687:CDS 30.0%
! AATGAATTGTCCATTTTGTG+CGG + chr1.3:29330525-29330544 MS.gene53687:CDS 30.0%
AAAAGAGTAAGGTCTATCAC+CGG - chr1.3:29330580-29330599 None:intergenic 35.0%
ATACTGACACAAATTCGAGA+AGG + chr1.3:29330726-29330745 MS.gene53687:CDS 35.0%
CAGAATCTCATCATGATTCT+CGG - chr1.3:29330763-29330782 None:intergenic 35.0%
CATACAAAGAGCTTCAAGAT+TGG + chr1.3:29330832-29330851 MS.gene53687:CDS 35.0%
GAATCATGATGAGATTCTGA+AGG + chr1.3:29330764-29330783 MS.gene53687:CDS 35.0%
AAAGAGTAAGGTCTATCACC+GGG - chr1.3:29330579-29330598 None:intergenic 40.0%
! AATGTAACTTGCCTCGTGTT+AGG - chr1.3:29330471-29330490 None:intergenic 40.0%
! ATCAGAAGATGGGTTTCCTT+GGG - chr1.3:29330667-29330686 None:intergenic 40.0%
! GGTGATAGACCTTACTCTTT+TGG + chr1.3:29330579-29330598 MS.gene53687:CDS 40.0%
!! TACATTCTCAAAGCGTCGAA+CGG + chr1.3:29330485-29330504 MS.gene53687:CDS 40.0%
ATCTTCTGATGCTCCCAAGA+TGG + chr1.3:29330677-29330696 MS.gene53687:CDS 45.0%
GCTATTGTTGTGTTCTCTCC+CGG + chr1.3:29330558-29330577 MS.gene53687:CDS 45.0%
GTATATGATGCTTCTTGCCG+AGG + chr1.3:29330890-29330909 MS.gene53687:CDS 45.0%
TCGTGAAAGATCCTAACACG+AGG + chr1.3:29330457-29330476 MS.gene53687:CDS 45.0%
! CATCAGAAGATGGGTTTCCT+TGG - chr1.3:29330668-29330687 None:intergenic 45.0%
!! ACATTCTCAAAGCGTCGAAC+GGG + chr1.3:29330486-29330505 MS.gene53687:CDS 45.0%
!! ATCTTGGGAGCATCAGAAGA+TGG - chr1.3:29330678-29330697 None:intergenic 45.0%
!! TCTTGGGAGCATCAGAAGAT+GGG - chr1.3:29330677-29330696 None:intergenic 45.0%
!! TTCGCTTTTATTCCCACCAC+TGG - chr1.3:29330918-29330937 None:intergenic 45.0%
AGCCAAGTATCTCCAGCAAG+AGG + chr1.3:29330626-29330645 MS.gene53687:CDS 50.0%
AGCCTCTTGCTGGAGATACT+TGG - chr1.3:29330631-29330650 None:intergenic 50.0%
CTGCAACAACGTCAACACCT+GGG - chr1.3:29330608-29330627 None:intergenic 50.0%
GACTTCTGCTCCGCACAAAA+TGG - chr1.3:29330538-29330557 None:intergenic 50.0%
!! TATTCCCACCACTGGTTCCT+CGG - chr1.3:29330910-29330929 None:intergenic 50.0%
CAACAACGTCAACACCTGGG+TGG - chr1.3:29330605-29330624 None:intergenic 55.0%
CCTGGGTGGCCAAAAGAGTA+AGG - chr1.3:29330591-29330610 None:intergenic 55.0%
GCTGATGCAAGCGATTCCCA+AGG + chr1.3:29330648-29330667 MS.gene53687:CDS 55.0%
GCTGCAACAACGTCAACACC+TGG - chr1.3:29330609-29330628 None:intergenic 55.0%
! CCTTACTCTTTTGGCCACCC+AGG + chr1.3:29330588-29330607 MS.gene53687:CDS 55.0%
CGCTTGCATCAGCCTCTTGC+TGG - chr1.3:29330641-29330660 None:intergenic 60.0%
CTTGCCGAGGAACCAGTGGT+GGG + chr1.3:29330903-29330922 MS.gene53687:CDS 60.0%
GCTTCTTGCCGAGGAACCAG+TGG + chr1.3:29330899-29330918 MS.gene53687:CDS 60.0%
TCTTGCCGAGGAACCAGTGG+TGG + chr1.3:29330902-29330921 MS.gene53687:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 29330429 29330968 29330429 ID=MS.gene53687
chr1.3 mRNA 29330429 29330968 29330429 ID=MS.gene53687.t1;Parent=MS.gene53687
chr1.3 exon 29330429 29330968 29330429 ID=MS.gene53687.t1.exon1;Parent=MS.gene53687.t1
chr1.3 CDS 29330429 29330968 29330429 ID=cds.MS.gene53687.t1;Parent=MS.gene53687.t1
Gene Sequence

>MS.gene53687

ATGGGTCGTCGCAAAATTGAGATTGAGATCGTGAAAGATCCTAACACGAGGCAAGTTACATTCTCAAAGCGTCGAACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATTTTGTGCGGAGCAGAAGTCGCTATTGTTGTGTTCTCTCCCGGTGATAGACCTTACTCTTTTGGCCACCCAGGTGTTGACGTTGTTGCAGCCAAGTATCTCCAGCAAGAGGCTGATGCAAGCGATTCCCAAGGAAACCCATCTTCTGATGCTCCCAAGATGGAAAAATTAAATCTAGAACTTGCTGAAATACTGACACAAATTCGAGAAGGTGAAAAGCAAGCCGAGAATCATGATGAGATTCTGAAGGAAAATGATGTGACAAATCTCTCTGAGCTTAAAGAATTGAGAGATTCATACAAAGAGCTTCAAGATTGGGTCAAATTACGTCTTAGTGATATTGAAATATCAGAGTATATGATGCTTCTTGCCGAGGAACCAGTGGTGGGAATAAAAGCGAAATCTGCAAAAAGGAAAAGAAGAAGAAATTGA
Protein sequence

>MS.gene53687.t1

MGRRKIEIEIVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGDRPYSFGHPGVDVVAAKYLQQEADASDSQGNPSSDAPKMEKLNLELAEILTQIREGEKQAENHDEILKENDVTNLSELKELRDSYKELQDWVKLRLSDIEISEYMMLLAEEPVVGIKAKSAKRKRRRN