AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53691

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53691.t1 MTR_1g047060 64.706 85 30 0 112 196 3 87 1.93e-31 112
MS.gene53691.t1 MTR_6g477900 32.768 177 88 8 4 166 6 165 1.79e-17 79.3
MS.gene53691.t1 MTR_2g080010 34.337 166 84 7 4 161 15 163 2.30e-16 77.8
MS.gene53691.t1 MTR_4g089135 35.556 135 74 4 4 132 15 142 4.20e-15 73.9
MS.gene53691.t1 MTR_4g094302 28.481 158 89 6 4 147 11 158 7.09e-15 71.2
MS.gene53691.t1 MTR_3g096920 31.250 160 84 6 4 147 7 156 7.39e-15 72.8
MS.gene53691.t1 MTR_8g023860 31.613 155 91 5 1 146 9 157 7.49e-15 73.6
MS.gene53691.t1 MTR_8g094580 32.298 161 82 7 4 147 7 157 8.81e-15 72.4
MS.gene53691.t1 MTR_7g100990 36.232 138 69 5 4 132 11 138 1.39e-14 72.4
MS.gene53691.t1 MTR_2g093810 32.704 159 83 5 4 145 14 165 1.72e-14 72.0
MS.gene53691.t1 MTR_4g081870 30.675 163 81 7 4 146 9 159 2.12e-14 71.2
MS.gene53691.t1 MTR_1g008740 31.847 157 89 6 2 146 25 175 3.03e-14 71.6
MS.gene53691.t1 MTR_1g008740 31.847 157 89 6 2 146 11 161 4.03e-14 71.2
MS.gene53691.t1 MTR_3g096920 34.307 137 74 5 4 134 7 133 4.42e-14 70.9
MS.gene53691.t1 MTR_4g094302 31.008 129 80 4 4 132 11 130 4.50e-14 68.2
MS.gene53691.t1 MTR_5g041940 31.288 163 80 8 4 146 3 153 5.24e-14 70.1
MS.gene53691.t1 MTR_3g109340 31.210 157 89 6 2 146 20 169 7.04e-14 70.5
MS.gene53691.t1 MTR_3g088110 32.500 160 82 7 4 147 7 156 1.27e-13 69.3
MS.gene53691.t1 MTR_6g084430 32.051 156 86 7 2 146 3 149 1.33e-13 69.7
MS.gene53691.t1 MTR_3g109340 30.769 156 90 6 2 146 20 168 1.82e-13 69.3
MS.gene53691.t1 MTR_3g096140 28.788 198 116 7 2 183 5 193 2.23e-13 68.6
MS.gene53691.t1 MTR_3g064580 31.847 157 86 6 4 146 6 155 2.48e-13 69.7
MS.gene53691.t1 MTR_3g096140 31.250 160 86 6 2 146 5 155 4.42e-13 68.2
MS.gene53691.t1 MTR_8g023930 30.719 153 91 5 2 145 22 168 4.83e-13 68.6
MS.gene53691.t1 MTR_8g059170 30.818 159 84 7 4 146 14 162 1.53e-12 66.6
MS.gene53691.t1 MTR_3g093040 30.625 160 83 8 4 146 108 256 1.71e-12 66.2
MS.gene53691.t1 MTR_4g134460 32.692 156 86 7 2 146 52 199 2.33e-12 66.2
MS.gene53691.t1 MTR_2g079990 31.210 157 84 7 4 146 16 162 3.17e-12 65.9
MS.gene53691.t1 MTR_7g005280 31.613 155 83 6 4 146 15 158 3.76e-12 64.7
MS.gene53691.t1 MTR_1g090720 32.515 163 82 7 4 146 42 196 4.23e-12 65.9
MS.gene53691.t1 MTR_8g023900 29.341 167 94 7 4 157 12 167 4.54e-12 65.5
MS.gene53691.t1 MTR_8g023900 26.961 204 126 9 7 198 196 388 2.83e-11 63.2
MS.gene53691.t1 MTR_3g116070 30.612 147 90 5 4 144 23 163 8.46e-12 64.7
MS.gene53691.t1 MTR_6g012670 28.070 171 94 8 4 155 20 180 1.49e-11 63.5
MS.gene53691.t1 MTR_1g097300 33.083 133 76 5 6 132 21 146 1.51e-11 64.3
MS.gene53691.t1 MTR_8g099750 32.143 140 74 5 4 134 14 141 1.54e-11 62.8
MS.gene53691.t1 MTR_4g035590 30.719 153 90 7 4 146 8 154 1.63e-11 63.5
MS.gene53691.t1 MTR_7g085220 27.749 191 97 9 4 169 8 182 1.98e-11 63.5
MS.gene53691.t1 MTR_2g079990 33.824 136 73 6 4 132 16 141 2.07e-11 63.5
MS.gene53691.t1 MTR_2g064090 29.299 157 90 7 4 146 6 155 3.27e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53691.t1 AT2G24430 34.395 157 84 6 2 146 14 163 7.69e-17 78.6
MS.gene53691.t1 AT2G24430 34.395 157 84 6 2 146 14 163 7.69e-17 78.6
MS.gene53691.t1 AT3G17730 32.484 157 84 7 4 146 6 154 1.03e-16 77.4
MS.gene53691.t1 AT3G10490 33.544 158 82 7 4 146 27 176 1.07e-16 77.0
MS.gene53691.t1 AT2G27300 28.111 217 133 7 4 204 14 223 2.02e-16 77.8
MS.gene53691.t1 AT1G71930 30.573 157 92 5 4 149 9 159 5.69e-16 76.3
MS.gene53691.t1 AT1G71930 30.573 157 92 5 4 149 9 159 5.69e-16 76.3
MS.gene53691.t1 AT3G10490 33.544 158 82 7 4 146 27 176 7.91e-16 76.6
MS.gene53691.t1 AT4G36160 29.747 158 94 5 4 150 14 165 9.95e-16 76.3
MS.gene53691.t1 AT4G36160 29.747 158 94 5 4 150 10 161 1.01e-15 76.3
MS.gene53691.t1 AT4G36160 29.747 158 94 5 4 150 10 161 1.01e-15 76.3
MS.gene53691.t1 AT3G10480 33.544 158 82 7 4 146 27 176 2.90e-15 75.1
MS.gene53691.t1 AT3G10480 33.121 157 83 7 4 146 27 175 9.62e-15 73.6
MS.gene53691.t1 AT1G61110 34.307 137 76 4 4 134 16 144 1.25e-14 72.4
MS.gene53691.t1 AT4G35580 29.814 161 95 6 1 149 6 160 1.51e-14 73.2
MS.gene53691.t1 AT4G35580 29.814 161 95 6 1 149 6 160 1.67e-14 72.8
MS.gene53691.t1 AT4G35580 29.814 161 95 6 1 149 6 160 1.69e-14 72.8
MS.gene53691.t1 AT1G33060 30.120 166 88 7 1 149 21 175 1.90e-14 72.8
MS.gene53691.t1 AT1G33060 30.120 166 88 7 1 149 21 175 1.94e-14 72.8
MS.gene53691.t1 AT4G27410 30.864 162 88 7 4 151 14 165 3.85e-14 70.9
MS.gene53691.t1 AT5G39610 32.278 158 83 7 4 146 20 168 3.96e-14 70.9
MS.gene53691.t1 AT1G01720 32.919 161 81 7 4 147 7 157 6.71e-14 70.1
MS.gene53691.t1 AT5G46590 32.484 157 84 7 4 145 6 155 8.38e-14 70.1
MS.gene53691.t1 AT3G49530 29.114 158 95 6 1 146 10 162 1.08e-13 70.5
MS.gene53691.t1 AT3G49530 29.114 158 95 6 1 146 10 162 1.09e-13 70.5
MS.gene53691.t1 AT1G54330 32.026 153 87 6 4 146 6 151 1.19e-13 69.7
MS.gene53691.t1 AT5G64530 33.588 131 74 4 4 134 3 120 1.22e-13 67.8
MS.gene53691.t1 AT4G28530 29.518 166 91 5 4 147 10 171 1.51e-13 69.7
MS.gene53691.t1 AT5G64530 33.588 131 74 4 4 134 3 120 1.94e-13 66.6
MS.gene53691.t1 AT1G26870 33.548 155 88 5 2 149 14 160 2.33e-13 69.3
MS.gene53691.t1 AT3G18400 31.646 158 87 8 2 147 3 151 2.36e-13 68.9
MS.gene53691.t1 AT3G29035 33.333 138 77 5 4 135 24 152 2.86e-13 68.6
MS.gene53691.t1 AT3G15510 31.447 159 86 6 10 161 23 165 4.71e-13 68.2
MS.gene53691.t1 AT5G04410 30.128 156 89 6 4 146 9 157 6.29e-13 68.2
MS.gene53691.t1 AT4G10350 32.051 156 87 7 4 146 9 158 8.08e-13 67.4
MS.gene53691.t1 AT1G77450 31.250 160 84 6 4 147 10 159 8.51e-13 66.6
MS.gene53691.t1 AT5G46590 33.333 138 78 6 4 134 6 136 1.08e-12 66.6
MS.gene53691.t1 AT3G03200 31.646 158 85 7 4 146 6 155 1.30e-12 67.4
MS.gene53691.t1 AT1G52890 29.936 157 86 7 4 146 14 160 1.60e-12 66.6
MS.gene53691.t1 AT3G10500 31.410 156 87 6 4 146 9 157 5.52e-12 65.5
MS.gene53691.t1 AT5G24590 30.380 158 87 7 4 146 13 162 5.76e-12 65.5
MS.gene53691.t1 AT5G04395 31.081 148 81 6 4 134 28 171 1.91e-11 61.6
MS.gene53691.t1 AT3G04060 30.818 159 85 8 4 146 20 169 2.73e-11 63.2
MS.gene53691.t1 AT5G53950 26.368 201 125 6 2 196 15 198 4.64e-11 62.4
MS.gene53691.t1 AT1G79580 30.065 153 92 6 4 146 17 164 7.90e-11 61.6
MS.gene53691.t1 AT1G79580 30.065 153 92 6 4 146 17 164 7.90e-11 61.6
MS.gene53691.t1 AT1G79580 30.065 153 92 6 4 146 17 164 7.90e-11 61.6
MS.gene53691.t1 AT1G79580 30.065 153 92 6 4 146 17 164 7.90e-11 61.6
MS.gene53691.t1 AT1G79580 30.065 153 92 6 4 146 17 164 7.90e-11 61.6

Find 64 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGCTTAAGCATGCACTTC+TGG 0.248003 1.3:+29375967 MS.gene53691:CDS
CAATGGTTCTGAGCTAATTA+AGG 0.256935 1.3:+29374511 MS.gene53691:CDS
GCTGGTGCTGGTGCTGCTGC+TGG 0.270068 1.3:+29375071 MS.gene53691:CDS
GCTGGTGCTGCTGCTGGTGC+TGG 0.319574 1.3:+29375077 MS.gene53691:CDS
GGAGCTGATAACGTGGTTCT+AGG 0.360842 1.3:+29374701 MS.gene53691:CDS
CGTGTGTTTGACTGCCCACC+AGG 0.412298 1.3:+29374948 MS.gene53691:CDS
AACACACGGCAACACACAAA+AGG 0.418206 1.3:-29374933 None:intergenic
GAAGTAAGGCGCAATTCAAA+TGG 0.422300 1.3:-29374557 None:intergenic
GAAGAGGTTCAGAATTTCAA+TGG 0.424440 1.3:+29374494 MS.gene53691:CDS
AGGTGATGCATCGTATTTGC+AGG 0.428163 1.3:+29375133 MS.gene53691:CDS
GGTACTGTAAGACAGGATAT+TGG 0.432912 1.3:+29374645 MS.gene53691:CDS
GCTGGTCCTGCTGTTGATGA+TGG 0.434280 1.3:+29375095 MS.gene53691:CDS
TGGCGTTGGCTTCGTCCCTT+CGG 0.444128 1.3:+29374430 MS.gene53691:CDS
TGATGTCACTCAGAAACCTA+TGG 0.460864 1.3:+29375040 MS.gene53691:CDS
GCCTTCTTCAACATCCGTTA+AGG 0.461031 1.3:-29374997 None:intergenic
GCAATTCAAATGGGTCATAC+TGG 0.471306 1.3:-29374547 None:intergenic
CCTCCTCTGCTCATCAACTT+TGG 0.480636 1.3:-29374624 None:intergenic
CAGAGGAGGTACTGTAAGAC+AGG 0.483813 1.3:+29374638 MS.gene53691:CDS
CAAATGGGTCATACTGGTAC+AGG 0.492656 1.3:-29374541 None:intergenic
GAATTGCTTCCACCTGGCGT+TGG 0.493230 1.3:+29374416 MS.gene53691:CDS
CCACATGGACGCTAGGACAC+CGG 0.500540 1.3:+29375943 MS.gene53691:CDS
ATGGATCTGAAAGGTGAGTT+CGG 0.504576 1.3:+29374972 MS.gene53691:CDS
CCTTGGGTGACGGAAGGAAA+AGG 0.509656 1.3:-29374582 None:intergenic
GTGAAGCAGTAAAATTCCCT+TGG 0.511128 1.3:-29374599 None:intergenic
GATGTCACTCAGAAACCTAT+GGG 0.511266 1.3:+29375041 MS.gene53691:CDS
GACAGGATATTGGATGCAGA+AGG 0.514396 1.3:+29374655 MS.gene53691:CDS
AGGTGAGTTCGGAGCCTTAA+CGG 0.523642 1.3:+29374983 MS.gene53691:CDS
AGTGCATGCTTAAGCTGCTC+CGG 0.526169 1.3:-29375962 None:intergenic
GAAGGGACGAAGCCAACGCC+AGG 0.531335 1.3:-29374428 None:intergenic
AGTAAAATTCCCTTGGGTGA+CGG 0.539767 1.3:-29374592 None:intergenic
TGGACGCTGTCAAAACTAGC+TGG 0.540827 1.3:+29374765 MS.gene53691:CDS
CACTCTTGCTAACAAGCCTC+AGG 0.544263 1.3:+29374802 MS.gene53691:CDS
GTTGAAGAAGGCGATGCTGC+TGG 0.544550 1.3:+29375008 MS.gene53691:CDS
AAGTAAGGCGCAATTCAAAT+GGG 0.549492 1.3:-29374556 None:intergenic
GCCTTAACGGATGTTGAAGA+AGG 0.552951 1.3:+29374996 MS.gene53691:CDS
GCTATTCGAGACATTACCGT+TGG 0.557631 1.3:+29374680 MS.gene53691:CDS
TGAAGCAGTAAAATTCCCTT+GGG 0.559532 1.3:-29374598 None:intergenic
TTGTCTTCCACATGGACGCT+AGG 0.559553 1.3:+29375936 MS.gene53691:CDS
TGGCAAGGTAGTGGCTAACA+AGG 0.563537 1.3:-29374460 None:intergenic
GTTTGACTGCCCACCAGGGA+TGG 0.566884 1.3:+29374953 MS.gene53691:CDS
GGAAGGAAAAGGATGAAGTA+AGG 0.567017 1.3:-29374571 None:intergenic
CCTTTCAGATCCATCCCTGG+TGG 0.578274 1.3:-29374963 None:intergenic
TCACCTTTCAGATCCATCCC+TGG 0.585698 1.3:-29374966 None:intergenic
GCACAACCATCATCAACAGC+AGG 0.592957 1.3:-29375101 None:intergenic
CTTTCAGATCCATCCCTGGT+GGG 0.593720 1.3:-29374962 None:intergenic
GCAATGGAATTGCTTCCACC+TGG 0.596598 1.3:+29374410 None:intergenic
AAATTCCCTTGGGTGACGGA+AGG 0.600300 1.3:-29374588 None:intergenic
GGGACGAAGCCAACGCCAGG+TGG 0.602159 1.3:-29374425 None:intergenic
GATGGTTGTGCTGCTGAGCA+AGG 0.608689 1.3:+29375113 MS.gene53691:CDS
CCAAAGTTGATGAGCAGAGG+AGG 0.609229 1.3:+29374624 MS.gene53691:CDS
ACAGGATATTGGATGCAGAA+GGG 0.612256 1.3:+29374656 MS.gene53691:CDS
CTATTTAGGAAATTCACCGA+TGG 0.613156 1.3:+29374745 MS.gene53691:CDS
CTGCCAAAGTTGATGAGCAG+AGG 0.624165 1.3:+29374621 MS.gene53691:CDS
CCACCAGGGATGGATCTGAA+AGG 0.624529 1.3:+29374963 MS.gene53691:CDS
AACCACGTTATCAGCTCCAA+CGG 0.626095 1.3:-29374696 None:intergenic
TACCGTTGGAGCTGATAACG+TGG 0.651576 1.3:+29374694 MS.gene53691:CDS
TGACTGTGTTGTCTTCCACA+TGG 0.651853 1.3:+29375928 MS.gene53691:CDS
CTGGTGGGCAGTCAAACACA+CGG 0.652222 1.3:-29374947 None:intergenic
CCGGTGTCCTAGCGTCCATG+TGG 0.665425 1.3:-29375943 None:intergenic
TAACAAGGAGTTCATCCGAA+GGG 0.665782 1.3:-29374445 None:intergenic
ATGTCACTCAGAAACCTATG+GGG 0.683258 1.3:+29375042 MS.gene53691:CDS
GTGTGTTTGACTGCCCACCA+GGG 0.701217 1.3:+29374949 MS.gene53691:CDS
CTAACAAGGAGTTCATCCGA+AGG 0.706470 1.3:-29374446 None:intergenic
TGTCACTCAGAAACCTATGG+GGG 0.731150 1.3:+29375043 MS.gene53691:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTTATAAAAAAAAA+AGG - chr1.3:29375749-29375768 None:intergenic 0.0%
!! ATCAATATTAATTAATCTAT+TGG + chr1.3:29374869-29374888 MS.gene53691:intron 10.0%
!! TTAAAAAAATGGTTTAATTA+GGG + chr1.3:29375508-29375527 MS.gene53691:intron 10.0%
!! TTTAAAAAAATGGTTTAATT+AGG + chr1.3:29375507-29375526 MS.gene53691:intron 10.0%
!!! TTTTTGAAATTTTAAAGAAT+CGG - chr1.3:29375583-29375602 None:intergenic 10.0%
!! GATAAAATTTATCAAAACTT+TGG + chr1.3:29375398-29375417 MS.gene53691:intron 15.0%
!! TTATATATAAATAATTGTGC+AGG + chr1.3:29374908-29374927 MS.gene53691:intron 15.0%
!!! GGAGTTTATTTTTAAAAAAA+TGG + chr1.3:29375497-29375516 MS.gene53691:intron 15.0%
!! AAATAATGATGAATTTGTCA+TGG - chr1.3:29375773-29375792 None:intergenic 20.0%
!!! AAAATAAACTCCGAATTTTT+TGG - chr1.3:29375489-29375508 None:intergenic 20.0%
!!! CAACTTTTCATTTCATTTTA+TGG + chr1.3:29375824-29375843 MS.gene53691:intron 20.0%
! ATATGTATTTGACTGCTATT+GGG + chr1.3:29375255-29375274 MS.gene53691:intron 25.0%
! TGATGAAATAACGAACAAAA+GGG - chr1.3:29374853-29374872 None:intergenic 25.0%
! TTGATGAAATAACGAACAAA+AGG - chr1.3:29374854-29374873 None:intergenic 25.0%
!! ATTTTATGGTAGAGATAAGA+AGG + chr1.3:29375838-29375857 MS.gene53691:intron 25.0%
!! TCTCTCTTCTTTTTCTATTT+AGG + chr1.3:29374731-29374750 MS.gene53691:CDS 25.0%
!!! GTTTTGTTTTGATGTTTATC+AGG + chr1.3:29375886-29375905 MS.gene53691:intron 25.0%
AAAATGATGCGATTGAATGT+GGG + chr1.3:29375290-29375309 MS.gene53691:intron 30.0%
AACGACCACGATTTAAAAAT+TGG - chr1.3:29375348-29375367 None:intergenic 30.0%
ACATGTTACAATCACATGAA+TGG - chr1.3:29375620-29375639 None:intergenic 30.0%
CATATGTATTTGACTGCTAT+TGG + chr1.3:29375254-29375273 MS.gene53691:intron 30.0%
CATCAAAATCATTGATGTTG+TGG - chr1.3:29375316-29375335 None:intergenic 30.0%
TAAAATGATGCGATTGAATG+TGG + chr1.3:29375289-29375308 MS.gene53691:intron 30.0%
TTGGCTTCTTCCAAAAAATT+CGG + chr1.3:29375476-29375495 MS.gene53691:intron 30.0%
! AATTTTTAAATCGTGGTCGT+TGG + chr1.3:29375347-29375366 MS.gene53691:intron 30.0%
! CTCATTAGTGTCAATTTTGT+GGG + chr1.3:29375448-29375467 MS.gene53691:intron 30.0%
! TATGGCCAATTTTTAAATCG+TGG + chr1.3:29375340-29375359 MS.gene53691:intron 30.0%
! TCTCATTAGTGTCAATTTTG+TGG + chr1.3:29375447-29375466 MS.gene53691:intron 30.0%
!! CAATGATTTTGATGTCTGTA+TGG + chr1.3:29375322-29375341 MS.gene53691:intron 30.0%
!!! AACCTCTTCATTGTTTTTGT+TGG - chr1.3:29374483-29374502 None:intergenic 30.0%
AAGTAAGGCGCAATTCAAAT+GGG - chr1.3:29374559-29374578 None:intergenic 35.0%
CTATTTAGGAAATTCACCGA+TGG + chr1.3:29374745-29374764 MS.gene53691:CDS 35.0%
GAAATAACGAACAAAAGGGA+AGG - chr1.3:29374849-29374868 None:intergenic 35.0%
GAAGAGGTTCAGAATTTCAA+TGG + chr1.3:29374494-29374513 MS.gene53691:CDS 35.0%
TGAAGCAGTAAAATTCCCTT+GGG - chr1.3:29374601-29374620 None:intergenic 35.0%
TGCCAACAAAAACAATGAAG+AGG + chr1.3:29374478-29374497 MS.gene53691:CDS 35.0%
TTTCCCAAATACAATACCTG+AGG - chr1.3:29374821-29374840 None:intergenic 35.0%
! AAGCCTCAGGTATTGTATTT+GGG + chr1.3:29374815-29374834 MS.gene53691:intron 35.0%
! GTCAATTTTGTGGGATAACT+TGG + chr1.3:29375457-29375476 MS.gene53691:intron 35.0%
!! CAATGGTTCTGAGCTAATTA+AGG + chr1.3:29374511-29374530 MS.gene53691:CDS 35.0%
!!! CTTCATTGTTTTTGTTGGCA+AGG - chr1.3:29374478-29374497 None:intergenic 35.0%
ACAGGATATTGGATGCAGAA+GGG + chr1.3:29374656-29374675 MS.gene53691:CDS 40.0%
AGGACGTGATTTGAAGAATC+TGG - chr1.3:29375729-29375748 None:intergenic 40.0%
AGTAAAATTCCCTTGGGTGA+CGG - chr1.3:29374595-29374614 None:intergenic 40.0%
ATGGATCTGAAAGGTGAGTT+CGG + chr1.3:29374972-29374991 MS.gene53691:CDS 40.0%
ATGTCACTCAGAAACCTATG+GGG + chr1.3:29375042-29375061 MS.gene53691:CDS 40.0%
GAAGTAAGGCGCAATTCAAA+TGG - chr1.3:29374560-29374579 None:intergenic 40.0%
GATGTCACTCAGAAACCTAT+GGG + chr1.3:29375041-29375060 MS.gene53691:CDS 40.0%
GCAATTCAAATGGGTCATAC+TGG - chr1.3:29374550-29374569 None:intergenic 40.0%
GGAAGGAAAAGGATGAAGTA+AGG - chr1.3:29374574-29374593 None:intergenic 40.0%
GGTACTGTAAGACAGGATAT+TGG + chr1.3:29374645-29374664 MS.gene53691:CDS 40.0%
GTGAAGCAGTAAAATTCCCT+TGG - chr1.3:29374602-29374621 None:intergenic 40.0%
TAACAAGGAGTTCATCCGAA+GGG - chr1.3:29374448-29374467 None:intergenic 40.0%
TGATGTCACTCAGAAACCTA+TGG + chr1.3:29375040-29375059 MS.gene53691:CDS 40.0%
! CAAGCCTCAGGTATTGTATT+TGG + chr1.3:29374814-29374833 MS.gene53691:intron 40.0%
!! TGTTTTTGTTGGCAAGGTAG+TGG - chr1.3:29374472-29374491 None:intergenic 40.0%
AACACACGGCAACACACAAA+AGG - chr1.3:29374936-29374955 None:intergenic 45.0%
AACCACGTTATCAGCTCCAA+CGG - chr1.3:29374699-29374718 None:intergenic 45.0%
AGGTGATGCATCGTATTTGC+AGG + chr1.3:29375133-29375152 MS.gene53691:CDS 45.0%
CAAATGGGTCATACTGGTAC+AGG - chr1.3:29374544-29374563 None:intergenic 45.0%
CTAACAAGGAGTTCATCCGA+AGG - chr1.3:29374449-29374468 None:intergenic 45.0%
GACAGGATATTGGATGCAGA+AGG + chr1.3:29374655-29374674 MS.gene53691:CDS 45.0%
GCCTTCTTCAACATCCGTTA+AGG - chr1.3:29375000-29375019 None:intergenic 45.0%
GCTATTCGAGACATTACCGT+TGG + chr1.3:29374680-29374699 MS.gene53691:CDS 45.0%
TGACTGTGTTGTCTTCCACA+TGG + chr1.3:29375928-29375947 MS.gene53691:CDS 45.0%
TGTCACTCAGAAACCTATGG+GGG + chr1.3:29375043-29375062 MS.gene53691:CDS 45.0%
! GCCTTAACGGATGTTGAAGA+AGG + chr1.3:29374996-29375015 MS.gene53691:CDS 45.0%
!!! CTAGTTTTGACAGCGTCCAT+CGG - chr1.3:29374764-29374783 None:intergenic 45.0%
AGGTGAGTTCGGAGCCTTAA+CGG + chr1.3:29374983-29375002 MS.gene53691:CDS 50.0%
AGTGCATGCTTAAGCTGCTC+CGG - chr1.3:29375965-29375984 None:intergenic 50.0%
CACTCTTGCTAACAAGCCTC+AGG + chr1.3:29374802-29374821 MS.gene53691:CDS 50.0%
CCTCCTCTGCTCATCAACTT+TGG - chr1.3:29374627-29374646 None:intergenic 50.0%
CTTTCAGATCCATCCCTGGT+GGG - chr1.3:29374965-29374984 None:intergenic 50.0%
GCACAACCATCATCAACAGC+AGG - chr1.3:29375104-29375123 None:intergenic 50.0%
GCAGCTTAAGCATGCACTTC+TGG + chr1.3:29375967-29375986 MS.gene53691:CDS 50.0%
TCACCTTTCAGATCCATCCC+TGG - chr1.3:29374969-29374988 None:intergenic 50.0%
TGGACGCTGTCAAAACTAGC+TGG + chr1.3:29374765-29374784 MS.gene53691:CDS 50.0%
TTGTCTTCCACATGGACGCT+AGG + chr1.3:29375936-29375955 MS.gene53691:CDS 50.0%
! CTTTTCCTTCCGTCACCCAA+GGG + chr1.3:29374583-29374602 MS.gene53691:CDS 50.0%
! GGAGCTGATAACGTGGTTCT+AGG + chr1.3:29374701-29374720 MS.gene53691:CDS 50.0%
! TACCGTTGGAGCTGATAACG+TGG + chr1.3:29374694-29374713 MS.gene53691:CDS 50.0%
! TGGCAAGGTAGTGGCTAACA+AGG - chr1.3:29374463-29374482 None:intergenic 50.0%
!! AAATTCCCTTGGGTGACGGA+AGG - chr1.3:29374591-29374610 None:intergenic 50.0%
!! CAGAGGAGGTACTGTAAGAC+AGG + chr1.3:29374638-29374657 MS.gene53691:CDS 50.0%
!! CCAAAGTTGATGAGCAGAGG+AGG + chr1.3:29374624-29374643 MS.gene53691:CDS 50.0%
!! CTGCCAAAGTTGATGAGCAG+AGG + chr1.3:29374621-29374640 MS.gene53691:CDS 50.0%
ACTCAGAAACCTATGGGGGC+TGG + chr1.3:29375047-29375066 MS.gene53691:CDS 55.0%
CCACCAGGGATGGATCTGAA+AGG + chr1.3:29374963-29374982 MS.gene53691:CDS 55.0%
CCTTTCAGATCCATCCCTGG+TGG - chr1.3:29374966-29374985 None:intergenic 55.0%
GAATTGCTTCCACCTGGCGT+TGG + chr1.3:29374416-29374435 MS.gene53691:CDS 55.0%
GTGTGTTTGACTGCCCACCA+GGG + chr1.3:29374949-29374968 MS.gene53691:CDS 55.0%
GTTGAAGAAGGCGATGCTGC+TGG + chr1.3:29375008-29375027 MS.gene53691:CDS 55.0%
! CCTTTTCCTTCCGTCACCCA+AGG + chr1.3:29374582-29374601 MS.gene53691:CDS 55.0%
! CTGGTGGGCAGTCAAACACA+CGG - chr1.3:29374950-29374969 None:intergenic 55.0%
! GATGGTTGTGCTGCTGAGCA+AGG + chr1.3:29375113-29375132 MS.gene53691:CDS 55.0%
! GCTGGTCCTGCTGTTGATGA+TGG + chr1.3:29375095-29375114 MS.gene53691:CDS 55.0%
!! CCTTGGGTGACGGAAGGAAA+AGG - chr1.3:29374585-29374604 None:intergenic 55.0%
CCACATGGACGCTAGGACAC+CGG + chr1.3:29375943-29375962 MS.gene53691:CDS 60.0%
CGTGTGTTTGACTGCCCACC+AGG + chr1.3:29374948-29374967 MS.gene53691:CDS 60.0%
GTTTGACTGCCCACCAGGGA+TGG + chr1.3:29374953-29374972 MS.gene53691:CDS 60.0%
! AAACCTATGGGGGCTGGTGC+TGG + chr1.3:29375053-29375072 MS.gene53691:CDS 60.0%
!! TGGCGTTGGCTTCGTCCCTT+CGG + chr1.3:29374430-29374449 MS.gene53691:CDS 60.0%
CCGGTGTCCTAGCGTCCATG+TGG - chr1.3:29375946-29375965 None:intergenic 65.0%
GAAGGGACGAAGCCAACGCC+AGG - chr1.3:29374431-29374450 None:intergenic 65.0%
GCACCAGCACCAGCCCCCAT+AGG - chr1.3:29375059-29375078 None:intergenic 70.0%
GGGACGAAGCCAACGCCAGG+TGG - chr1.3:29374428-29374447 None:intergenic 70.0%
!! ATGGGGGCTGGTGCTGGTGC+TGG + chr1.3:29375059-29375078 MS.gene53691:CDS 70.0%
!! GCTGGTGCTGCTGCTGGTGC+TGG + chr1.3:29375077-29375096 MS.gene53691:CDS 70.0%
!! GCTGGTGCTGGTGCTGCTGC+TGG + chr1.3:29375071-29375090 MS.gene53691:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 29374413 29376024 29374413 ID=MS.gene53691
chr1.3 mRNA 29374413 29376024 29374413 ID=MS.gene53691.t1;Parent=MS.gene53691
chr1.3 exon 29374413 29374823 29374413 ID=MS.gene53691.t1.exon1;Parent=MS.gene53691.t1
chr1.3 CDS 29374413 29374823 29374413 ID=cds.MS.gene53691.t1;Parent=MS.gene53691.t1
chr1.3 exon 29374930 29375154 29374930 ID=MS.gene53691.t1.exon2;Parent=MS.gene53691.t1
chr1.3 CDS 29374930 29375154 29374930 ID=cds.MS.gene53691.t1;Parent=MS.gene53691.t1
chr1.3 exon 29375908 29376024 29375908 ID=MS.gene53691.t1.exon3;Parent=MS.gene53691.t1
chr1.3 CDS 29375908 29376024 29375908 ID=cds.MS.gene53691.t1;Parent=MS.gene53691.t1
Gene Sequence

>MS.gene53691

ATGGAATTGCTTCCACCTGGCGTTGGCTTCGTCCCTTCGGATGAACTCCTTGTTAGCCACTACCTTGCCAACAAAAACAATGAAGAGGTTCAGAATTTCAATGGTTCTGAGCTAATTAAGGAGCTGAACCTGTACCAGTATGACCCATTTGAATTGCGCCTTACTTCATCCTTTTCCTTCCGTCACCCAAGGGAATTTTACTGCTTCACTGCCAAAGTTGATGAGCAGAGGAGGTACTGTAAGACAGGATATTGGATGCAGAAGGGAGCTATTCGAGACATTACCGTTGGAGCTGATAACGTGGTTCTAGGAAAAAAGTCTCTCTTCTTTTTCTATTTAGGAAATTCACCGATGGACGCTGTCAAAACTAGCTGGACTATGTACGAGTACACTCTTGCTAACAAGCCTCAGGTATTGTATTTGGGAAATCTAACCTTCCCTTTTGTTCGTTATTTCATCAATATTAATTAATCTATTGGTAACTACTAACTATTTTTATATATAAATAATTGTGCAGGCTCCTTTTGTGTGTTGCCGTGTGTTTGACTGCCCACCAGGGATGGATCTGAAAGGTGAGTTCGGAGCCTTAACGGATGTTGAAGAAGGCGATGCTGCTGGCGATGACTCTGATGTCACTCAGAAACCTATGGGGGCTGGTGCTGGTGCTGGTGCTGCTGCTGGTGCTGGTCCTGCTGTTGATGATGGTTGTGCTGCTGAGCAAGGTGATGCATCGTATTTGCAGGTAAAATATATTAAATTTTGTTCTCTCTTTATATTTTGTTGTCAGTTAGAATTTTAGAATAGTTGAATGTGTCATAAATCATAATTTTTTTTTGTGTTGCATATGTATTTGACTGCTATTGGGCATAAGTTTAATAAAATGATGCGATTGAATGTGGGCCACAACATCAATGATTTTGATGTCTGTATGGCCAATTTTTAAATCGTGGTCGTTGGCTATTGCATCACAAACATTGACAGTGTAGATAAAATTTATCAAAACTTTGGTTTAATTTCAAGTTTTCATATTAGATTCTCATTAGTGTCAATTTTGTGGGATAACTTGGCTTCTTCCAAAAAATTCGGAGTTTATTTTTAAAAAAATGGTTTAATTAGGGATGTTATTGTTAAGAGTCAATCAATTAACGTTGTTGATGTTCTTTGCAACCGATTCTTTAAAATTTCAAAAAATTTACAACTTAATCCATTCATGTGATTGTAACATGTCAAAATGTCATCTTGTGTGTAGAAAATTAAGTGATAGTAATTCTCAAAACATATAGCAATTGATTAAGTTAACGTAGCTATTCTTACCAGATTCTTCAAATCACGTCCTTTTTTTTTTATAAATTTTTTGCCATGACAAATTCATCATTATTTTTATTGTTGTTGTTCTCACTTTTTGAAAATGCAACTTTTCATTTCATTTTATGGTAGAGATAAGAAGGAATTGTTGATGTATTGATTTGCTTTGTTTTGTTTTGATGTTTATCAGGCGAGTTATGCTGCATTTTTTGACTGTGTTGTCTTCCACATGGACGCTAGGACACCGGAGCAGCTTAAGCATGCACTTCTGGACGAAGATTTTCTTGAACTCGCTGATTTTGTATAA
Protein sequence

>MS.gene53691.t1

MELLPPGVGFVPSDELLVSHYLANKNNEEVQNFNGSELIKELNLYQYDPFELRLTSSFSFRHPREFYCFTAKVDEQRRYCKTGYWMQKGAIRDITVGADNVVLGKKSLFFFYLGNSPMDAVKTSWTMYEYTLANKPQAPFVCCRVFDCPPGMDLKGEFGALTDVEEGDAAGDDSDVTQKPMGAGAGAGAAAGAGPAVDDGCAAEQGDASYLQASYAAFFDCVVFHMDARTPEQLKHALLDEDFLELADFV