AlfalfaGEDB | MS.gene53749

M. sativa cultivar XinJiangDaYe / MS.gene53749

KEGG: -
GO: GO:0000976 GO:0000981 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0035326 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53749.t1	XP_003605494.2	74.7	217	42	1	3	219	28	231	7.60E-82	313.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53749.t1	Q9FJK3	50.7	134	65	1	2	135	27	159	2.2e-29	130.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53749.t1	G7JN54	74.7	217	42	1	3	219	28	231	5.5e-82	313.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene53749.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53749.t1	MTR_4g032290	80.751	213	28	1	7	219	32	231	1.89e-124	352
MS.gene53749.t1	MTR_4g031910	79.812	213	28	1	7	219	32	229	5.95e-119	337
MS.gene53749.t1	MTR_4g032620	58.257	218	78	2	2	219	27	231	1.34e-85	253
MS.gene53749.t1	MTR_8g036130	59.471	227	77	4	2	219	27	247	7.32e-84	249
MS.gene53749.t1	MTR_4g032260	82.400	125	22	0	7	131	32	156	1.17e-74	223
MS.gene53749.t1	MTR_3g065100	44.811	212	110	3	7	216	32	238	3.94e-53	171
MS.gene53749.t1	MTR_4g032270	74.545	110	14	1	110	219	36	131	5.73e-52	164
MS.gene53749.t1	MTR_3g466980	55.039	129	57	1	2	130	27	154	3.32e-48	157
MS.gene53749.t1	MTR_2g035610	74.725	91	23	0	7	97	32	122	3.73e-42	139
MS.gene53749.t1	MTR_3g466830	41.606	137	79	1	2	138	26	161	1.77e-34	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53749.t1	AT5G48670	49.612	129	64	1	7	135	32	159	3.21e-36	129
MS.gene53749.t1	AT1G65300	45.736	129	69	1	2	130	26	153	1.53e-33	122
MS.gene53749.t1	AT5G27810	56.989	93	40	0	4	96	1	93	4.79e-32	113
MS.gene53749.t1	AT1G65330	40.127	157	80	2	2	158	26	168	1.09e-31	117
MS.gene53749.t1	AT5G26630	35.326	184	106	2	9	192	34	204	1.43e-29	110
MS.gene53749.t1	AT5G26650	38.028	142	87	1	2	143	25	165	4.26e-29	112
MS.gene53749.t1	AT5G27960	37.324	142	88	1	2	143	25	165	2.23e-28	109
MS.gene53749.t1	AT1G31640	40.157	127	74	2	2	128	26	150	1.50e-26	106
MS.gene53749.t1	AT1G31630	34.395	157	88	3	2	158	26	167	1.77e-26	104
MS.gene53749.t1	AT3G05860	40.496	121	71	1	2	122	27	146	2.28e-22	90.9

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Find 0 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGAAGAAATGGCAATTAT+GGG	+	33302:3201-3220	MS.gene53749:CDS	30.0%
AAACCAAGTCCAACTTGAAA+TGG	+	33302:3140-3159	MS.gene53749:CDS	35.0%
AAGAGACTTTCTTGACACAA+AGG	+	33302:2890-2909	MS.gene53749:CDS	35.0%
AGAGACTTTCTTGACACAAA+GGG	+	33302:2891-2910	MS.gene53749:CDS	35.0%
ATGGCTCAATGTCTTAATGA+AGG	+	33302:2982-3001	MS.gene53749:CDS	35.0%
CATTAATAGGTATCCCAACA+TGG	-	33302:3233-3252	MS.gene53749:intergenic	35.0%
GAGTGAAGAAATGGCAATTA+TGG	+	33302:3200-3219	MS.gene53749:CDS	35.0%
GCACAACAATATGTCAACAA+TGG	+	33302:3014-3033	MS.gene53749:CDS	35.0%
TACCAACGTGATTCAAATTG+TGG	-	33302:3068-3087	MS.gene53749:intergenic	35.0%
TGGATATGAGTTATCTTGCT+TGG	+	33302:3034-3053	MS.gene53749:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
33302	gene	2709	3368	2709	ID=MS.gene53749
33302	mRNA	2709	3368	2709	ID=MS.gene53749.t1;Parent=MS.gene53749
33302	exon	2709	3368	2709	ID=MS.gene53749.t1.exon1;Parent=MS.gene53749.t1
33302	CDS	2709	3368	2709	ID=cds.MS.gene53749.t1;Parent=MS.gene53749.t1

Gene Sequence

>MS.gene53749

ATGGGTCTATTGAAAAAGGTTGATGAACTTAGCACCCTCTGTGGCATTGAAGCTTGTGCCATAGTGTATGGCCCTTATGAGCCTCAACCTGAGATTTGGCCTTCACCAGAGGGGGTCCAATCTGTGCTCTCAAAATTCATGACGATGCATGAGTTTCAAAAGTGCAAGAAAATGATGAACCAAGAGACTTTCTTGACACAAAGGGTTCTGAAGACTGAAGAGAAATTGATGAAACAAAGAAAAGATAATAGGGAGCAAGAGATGACAATACTCATGGCTCAATGTCTTAATGAAGGCAAAGTTGTGCACAACAATATGTCAACAATGGATATGAGTTATCTTGCTTGGTTGATCGACCACAATTTGAATCACGTTGGTAGACGTTTGGAAGCATGGGATAACAATGATCAAAATCAAATCATTGCTATTCAAAACCAAGTCCAACTTGAAATGGCGGCAACAATACCGCCACCACCTCCAGCAGCATCTAGGAGTGAAGAAATGGCAATTATGGGTCATGGCCATGTTGGGATACCTATTAATGATGATGACATTATGCAAAGTCAATTATTGATGGACTCAATGGTGGCTGGTAATGTGCAAGAGACAGTGCCATTTGGTGAGGTCAATTCTGAAGTTTGGCCTGATTTATTACCTTGA

Protein sequence

>MS.gene53749.t1

MGLLKKVDELSTLCGIEACAIVYGPYEPQPEIWPSPEGVQSVLSKFMTMHEFQKCKKMMNQETFLTQRVLKTEEKLMKQRKDNREQEMTILMAQCLNEGKVVHNNMSTMDMSYLAWLIDHNLNHVGRRLEAWDNNDQNQIIAIQNQVQLEMAATIPPPPPAASRSEEMAIMGHGHVGIPINDDDIMQSQLLMDSMVAGNVQETVPFGEVNSEVWPDLLP