AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53792

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53792.t1 MTR_7g029090 97.312 186 5 0 74 259 6 191 6.00e-135 378
MS.gene53792.t1 MTR_7g029095 74.517 259 26 2 1 259 1 219 3.81e-133 375
MS.gene53792.t1 MTR_7g029065 77.477 111 23 2 142 251 429 538 1.13e-47 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53792.t1 AT5G14140 59.449 254 84 5 12 255 15 259 4.75e-102 298

Find 66 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCATGATTCTTTCTTTC+AGG 0.222702 7.2:-70189982 MS.gene53792:CDS
GAAGTCTTCTGTCCCATTGC+TGG 0.271752 7.2:-70190131 MS.gene53792:intron
GGGTTGGAACTTACGTGAAA+TGG 0.341316 7.2:+70191209 None:intergenic
ATCCTGGATGGAACAAATAT+TGG 0.350543 7.2:-70190884 MS.gene53792:CDS
TGCTGGGTGTGGAGCGCGTT+TGG 0.354156 7.2:-70190114 MS.gene53792:CDS
TTTATCCTGTGTTTCTTTGA+AGG 0.386367 7.2:+70189164 None:intergenic
TTCTGTCCCATTGCTGGGTG+TGG 0.397837 7.2:-70190125 MS.gene53792:CDS
CAAAACGGAAAATTTGAATC+CGG 0.397939 7.2:+70191237 None:intergenic
ATGACATGCCTTTGGTGTTA+CGG 0.399250 7.2:+70189000 None:intergenic
TCTCAAAAGGAGGATACTTC+AGG 0.418130 7.2:-70189122 MS.gene53792:CDS
ACTCCTTCCTCCATCAGCTT+TGG 0.427536 7.2:-70189026 MS.gene53792:CDS
ACGAGAACTTCTTGTCAAAC+AGG 0.437900 7.2:-70191154 MS.gene53792:intron
CGTGAAATGGGTTTCCAAAA+CGG 0.438517 7.2:+70191222 None:intergenic
CGCGCTCCACACCCAGCAAT+GGG 0.438523 7.2:+70190119 None:intergenic
GGTTGGAACTTACGTGAAAT+GGG 0.448158 7.2:+70191210 None:intergenic
GACTCTAGAACACACAGAAC+AGG 0.456459 7.2:+70190043 None:intergenic
AAGTCTTCTGTCCCATTGCT+GGG 0.459510 7.2:-70190130 MS.gene53792:CDS
CATATAGTATGAATGCTTAG+TGG 0.469788 7.2:-70189288 MS.gene53792:intron
AACCAATATTTGTTCCATCC+AGG 0.473382 7.2:+70190882 None:intergenic
GGAGGATACTTCAGGAATGA+TGG 0.477569 7.2:-70189114 MS.gene53792:CDS
AGGGACAAATGACATGCCTT+TGG 0.478422 7.2:+70188992 None:intergenic
GGAAGTGGAAAATCAAAATC+CGG 0.482912 7.2:-70191256 MS.gene53792:CDS
AGCGCGTTTGGCTTCAATTG+AGG 0.497142 7.2:-70190102 MS.gene53792:CDS
TGACAAGAAGTTCTCGTTCG+AGG 0.497533 7.2:+70191160 None:intergenic
GATAGCGAAGAAAGGTGAAT+CGG 0.497649 7.2:+70191188 None:intergenic
AATTCAAAAGCTACAAAAGT+AGG 0.497972 7.2:-70189250 MS.gene53792:CDS
GATTCACCTTTCTTCGCTAT+CGG 0.511476 7.2:-70191186 MS.gene53792:CDS
CGAGCTGTTCAGCGTGGGAA+GGG 0.513540 7.2:-70188969 MS.gene53792:CDS
CAGTTAAGGACGTATCGATC+AGG 0.513945 7.2:-70190922 MS.gene53792:CDS
TCGAGCTGTTCAGCGTGGGA+AGG 0.516848 7.2:-70188970 MS.gene53792:CDS
CTAGTAACATGGAATTCCGC+TGG 0.516890 7.2:+70190843 None:intergenic
GAATGCTTAGTGGAAGGTTG+CGG 0.528977 7.2:-70189278 MS.gene53792:CDS
ACGCGCTCCACACCCAGCAA+TGG 0.530230 7.2:+70190118 None:intergenic
TTCCCACGCTGAACAGCTCG+AGG 0.542891 7.2:+70188972 None:intergenic
GCGTGGGAAGGGATCTAACT+CGG 0.545220 7.2:-70188958 MS.gene53792:CDS
TCCCTCGAGCTGTTCAGCGT+GGG 0.551783 7.2:-70188974 MS.gene53792:CDS
CGAAGAAAGGTGAATCGGGT+TGG 0.552955 7.2:+70191193 None:intergenic
GAGTATCGGAATTCGAATCC+TGG 0.556122 7.2:-70190900 MS.gene53792:CDS
CTCTGCCTTCAAAGAAACAC+AGG 0.556458 7.2:-70189169 MS.gene53792:CDS
AAAGAAAGAATCATGAACTT+CGG 0.556536 7.2:+70189986 None:intergenic
ATAGCGAAGAAAGGTGAATC+GGG 0.565377 7.2:+70191189 None:intergenic
GGAAGCGGAAAATGCAGCTA+TGG 0.572002 7.2:-70189093 MS.gene53792:CDS
GACGTATCGATCAGGAGTAT+CGG 0.573823 7.2:-70190914 MS.gene53792:CDS
CGTGGGAAGGGATCTAACTC+GGG 0.575940 7.2:-70188957 MS.gene53792:CDS
ATCGGAATTCGAATCCTGGA+TGG 0.575991 7.2:-70190896 MS.gene53792:CDS
CGACCAAAGCTGATGGAGGA+AGG 0.576405 7.2:+70189023 None:intergenic
GTCCCTCGAGCTGTTCAGCG+TGG 0.579249 7.2:-70188975 MS.gene53792:CDS
AGGTTACCGATAGCGAAGAA+AGG 0.581308 7.2:+70191180 None:intergenic
GGTTGAACTAACGATGGAAG+TGG 0.586593 7.2:-70191271 None:intergenic
TACTTCAGGAATGATGGAAG+CGG 0.587592 7.2:-70189108 MS.gene53792:CDS
TAGTAACATGGAATTCCGCT+GGG 0.597193 7.2:+70190844 None:intergenic
AGTATCTAGATTAAATACTT+CGG 0.598587 7.2:-70189054 MS.gene53792:CDS
TATGCTGAGCAAACGTGATG+TGG 0.604052 7.2:+70190016 None:intergenic
TAGTATGAATGCTTAGTGGA+AGG 0.607474 7.2:-70189284 MS.gene53792:CDS
TTTCAGGCAAAAGTTGCTCG+TGG 0.610110 7.2:-70189966 MS.gene53792:CDS
GTTACGGCGACCAAAGCTGA+TGG 0.611864 7.2:+70189016 None:intergenic
ATCTAGATACTGCTGAAACA+AGG 0.615031 7.2:+70189066 None:intergenic
TTTGGTCGCCGTAACACCAA+AGG 0.617378 7.2:-70189008 MS.gene53792:CDS
AAAGCTGATGGAGGAAGGAG+TGG 0.625836 7.2:+70189028 None:intergenic
ATGCTGAGCAAACGTGATGT+GGG 0.625974 7.2:+70190017 None:intergenic
TCCCACGCTGAACAGCTCGA+GGG 0.633991 7.2:+70188973 None:intergenic
AGTTGCTCGTGGCTATGACA+TGG 0.638718 7.2:-70189955 MS.gene53792:intron
ACGGCGACCAAAGCTGATGG+AGG 0.668193 7.2:+70189019 None:intergenic
TGCTGAGCAAACGTGATGTG+GGG 0.701816 7.2:+70190018 None:intergenic
AAACTTTATTTACCTCCCAG+CGG 0.702974 7.2:-70190859 MS.gene53792:CDS
TAACATGGAATTCCGCTGGG+AGG 0.719089 7.2:+70190847 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAACCAAATTATAAAAA+AGG + chr7.2:70190422-70190441 None:intergenic 10.0%
!! AAATTAAATAGAAGATATAA+AGG + chr7.2:70190483-70190502 None:intergenic 10.0%
!! TTGAATTTATACTTATAAAA+TGG - chr7.2:70189997-70190016 MS.gene53792:CDS 10.0%
!!! ATTTATATTTTTGATTAATG+TGG - chr7.2:70189144-70189163 MS.gene53792:CDS 10.0%
!!! ATTTGTAAGATTTTAAATTA+AGG + chr7.2:70190385-70190404 None:intergenic 10.0%
!! GTTATAGATAATTAATGATA+GGG - chr7.2:70190706-70190725 MS.gene53792:intron 15.0%
!! TAAGAAAGATTTCAAATTAA+TGG - chr7.2:70190677-70190696 MS.gene53792:intron 15.0%
!! TCAAAAATAAAAAAGGAATA+AGG - chr7.2:70189555-70189574 MS.gene53792:intron 15.0%
!!! AAGCTAACATATTATTTTTT+CGG - chr7.2:70190813-70190832 MS.gene53792:intron 15.0%
!!! TATGATTTAATTTAATGACA+TGG - chr7.2:70190285-70190304 MS.gene53792:intron 15.0%
!! AAATAATAGGTATTAGAACA+AGG - chr7.2:70189416-70189435 MS.gene53792:intron 20.0%
!! AATTTCAAGAACTATAAGAA+AGG + chr7.2:70189725-70189744 None:intergenic 20.0%
!! AGCTTCTTCAAAAATAAAAA+AGG - chr7.2:70189548-70189567 MS.gene53792:intron 20.0%
!! AGTATCTAGATTAAATACTT+CGG - chr7.2:70191139-70191158 MS.gene53792:intron 20.0%
!! CGTTATAGATAATTAATGAT+AGG - chr7.2:70190705-70190724 MS.gene53792:intron 20.0%
!! TATATCTGTAATCATTTATG+TGG - chr7.2:70189753-70189772 MS.gene53792:intron 20.0%
!! TTAATGATTTGACAAAGATT+GGG + chr7.2:70190660-70190679 None:intergenic 20.0%
!!! ACATATGAATTTTCTCTATT+AGG - chr7.2:70190840-70190859 MS.gene53792:intron 20.0%
!!! ATTCTAGTTCTCAAAATAAA+AGG + chr7.2:70189379-70189398 None:intergenic 20.0%
!!! GAAAGACCTTTTTTATAATT+TGG - chr7.2:70190413-70190432 MS.gene53792:intron 20.0%
!!! GTAAGATTTTAAATTAAGGT+AGG + chr7.2:70190381-70190400 None:intergenic 20.0%
!!! TGTTCTAATACCTATTATTT+TGG + chr7.2:70189416-70189435 None:intergenic 20.0%
!!! TTGTTATTTGAAACATACAA+TGG + chr7.2:70189805-70189824 None:intergenic 20.0%
! AAAGAAAGAATCATGAACTT+CGG + chr7.2:70190210-70190229 None:intergenic 25.0%
! AAATGACAATCTCTATAACA+TGG - chr7.2:70190867-70190886 MS.gene53792:CDS 25.0%
! AAGCAATATGTTACAAAATG+AGG + chr7.2:70190034-70190053 None:intergenic 25.0%
! AATTCAAAAGCTACAAAAGT+AGG - chr7.2:70190943-70190962 MS.gene53792:intron 25.0%
! AGAGTTAAGACCAAAATAAT+AGG - chr7.2:70189403-70189422 MS.gene53792:intron 25.0%
! AGATATAAAGGATGTAACAA+AGG + chr7.2:70190471-70190490 None:intergenic 25.0%
! CTTAATGATTTGACAAAGAT+TGG + chr7.2:70190661-70190680 None:intergenic 25.0%
! TGATTTAATGCACTGTTATT+AGG - chr7.2:70189583-70189602 MS.gene53792:intron 25.0%
!! TGTATCTTTTATCAACGTAA+CGG - chr7.2:70189875-70189894 MS.gene53792:intron 25.0%
!! TTTTCCTAGAAGTTAATCTT+TGG - chr7.2:70189972-70189991 MS.gene53792:CDS 25.0%
AAAGCCAAAGATTAACTTCT+AGG + chr7.2:70189979-70189998 None:intergenic 30.0%
AACTATAGTCCAAATCATCA+AGG - chr7.2:70190590-70190609 MS.gene53792:intron 30.0%
AAGTTAGACGAACACAATAA+AGG + chr7.2:70189193-70189212 None:intergenic 30.0%
AGTTCATGATTCTTTCTTTC+AGG - chr7.2:70190211-70190230 MS.gene53792:intron 30.0%
ATAAAAGGACTCTAGTAACA+TGG + chr7.2:70189364-70189383 None:intergenic 30.0%
CAAAACGGAAAATTTGAATC+CGG + chr7.2:70188959-70188978 None:intergenic 30.0%
CATATAGTATGAATGCTTAG+TGG - chr7.2:70190905-70190924 MS.gene53792:CDS 30.0%
CATCATTAACTGTTCTCAAA+GGG + chr7.2:70189658-70189677 None:intergenic 30.0%
TCATAGTTGAGTTTCTTAGA+AGG - chr7.2:70190515-70190534 MS.gene53792:intron 30.0%
TGGTTAATAGACTTCAGTTA+AGG - chr7.2:70189257-70189276 MS.gene53792:CDS 30.0%
TTGATTCATGTAACTAACCT+CGG - chr7.2:70190744-70190763 MS.gene53792:intron 30.0%
TTTATCCTGTGTTTCTTTGA+AGG + chr7.2:70191032-70191051 None:intergenic 30.0%
! ATTCCAAATCCTTGATGATT+TGG + chr7.2:70190602-70190621 None:intergenic 30.0%
! ATTTGGACTATAGTTTTCTC+TGG + chr7.2:70190585-70190604 None:intergenic 30.0%
! CGTTGATAAAAGATACACTT+TGG + chr7.2:70189872-70189891 None:intergenic 30.0%
AAAGACAGTCCATTAGTTAG+TGG - chr7.2:70190549-70190568 MS.gene53792:intron 35.0%
AACCAATATTTGTTCCATCC+AGG + chr7.2:70189314-70189333 None:intergenic 35.0%
AAGGATGTAACAAAGGAAGA+AGG + chr7.2:70190464-70190483 None:intergenic 35.0%
ACGCAAAAAACCTTCTCAAA+AGG - chr7.2:70191058-70191077 MS.gene53792:intron 35.0%
ACTATATGATTGTGCTCTAG+TGG - chr7.2:70189237-70189256 MS.gene53792:CDS 35.0%
AGAACAAGGCATGCTAATTT+GGG - chr7.2:70189430-70189449 MS.gene53792:intron 35.0%
AGGTAAGCAAGTAGTATAAC+AGG + chr7.2:70189705-70189724 None:intergenic 35.0%
AGTCCAAATCATCAAGGATT+TGG - chr7.2:70190596-70190615 MS.gene53792:intron 35.0%
ATCCTGGATGGAACAAATAT+TGG - chr7.2:70189309-70189328 MS.gene53792:intron 35.0%
ATCTAGATACTGCTGAAACA+AGG + chr7.2:70191130-70191149 None:intergenic 35.0%
CAAAAAACCTTCTCAAAAGG+AGG - chr7.2:70191061-70191080 MS.gene53792:intron 35.0%
CCATCATTAACTGTTCTCAA+AGG + chr7.2:70189659-70189678 None:intergenic 35.0%
GGAAGTGGAAAATCAAAATC+CGG - chr7.2:70188937-70188956 MS.gene53792:CDS 35.0%
GTAACATATTGCTTTGTGCA+GGG - chr7.2:70190040-70190059 MS.gene53792:CDS 35.0%
TAGAACAAGGCATGCTAATT+TGG - chr7.2:70189429-70189448 MS.gene53792:intron 35.0%
TAGTATGAATGCTTAGTGGA+AGG - chr7.2:70190909-70190928 MS.gene53792:CDS 35.0%
TGAGTTTGACGAAATCACAA+TGG - chr7.2:70189825-70189844 MS.gene53792:intron 35.0%
TGTAACATATTGCTTTGTGC+AGG - chr7.2:70190039-70190058 MS.gene53792:CDS 35.0%
TTAGGTCTTACTCAAACTTC+AGG - chr7.2:70189601-70189620 MS.gene53792:intron 35.0%
TTCGCTTTACCACTAACTAA+TGG + chr7.2:70190561-70190580 None:intergenic 35.0%
TTGAAAAACTCGAATGACGT+CGG + chr7.2:70190999-70191018 None:intergenic 35.0%
TTGGAGCTTCAACAAAATCA+CGG + chr7.2:70189853-70189872 None:intergenic 35.0%
! AAACTTTATTTACCTCCCAG+CGG - chr7.2:70189334-70189353 MS.gene53792:intron 35.0%
! CCTTTGAGAACAGTTAATGA+TGG - chr7.2:70189656-70189675 MS.gene53792:intron 35.0%
! CGGATTCAAATTTTCCGTTT+TGG - chr7.2:70188957-70188976 MS.gene53792:CDS 35.0%
! GGATTTGGAATCAAATGTTC+AGG - chr7.2:70190611-70190630 MS.gene53792:intron 35.0%
!!! GTCATTCGAGTTTTTCAAGA+AGG - chr7.2:70191001-70191020 MS.gene53792:intron 35.0%
ACGAGAACTTCTTGTCAAAC+AGG - chr7.2:70189039-70189058 MS.gene53792:CDS 40.0%
ACTTACCGCGAATTCAAACA+TGG - chr7.2:70189924-70189943 MS.gene53792:intron 40.0%
AGACGAACACAATAAAGGCT+CGG + chr7.2:70189188-70189207 None:intergenic 40.0%
AGACTACACAACAACAACAG+AGG + chr7.2:70190793-70190812 None:intergenic 40.0%
ATAGCGAAGAAAGGTGAATC+GGG + chr7.2:70189007-70189026 None:intergenic 40.0%
CAATAAAGGCTCGGAAATTG+AGG + chr7.2:70189179-70189198 None:intergenic 40.0%
GAATCGAATCAGAGACCTTA+AGG + chr7.2:70189498-70189517 None:intergenic 40.0%
GAATTCGCGGTAAGTATGTT+TGG + chr7.2:70189919-70189938 None:intergenic 40.0%
GATAGCGAAGAAAGGTGAAT+CGG + chr7.2:70189008-70189027 None:intergenic 40.0%
GATTCACCTTTCTTCGCTAT+CGG - chr7.2:70189007-70189026 MS.gene53792:CDS 40.0%
GGTTGGAACTTACGTGAAAT+GGG + chr7.2:70188986-70189005 None:intergenic 40.0%
TAGTAACATGGAATTCCGCT+GGG + chr7.2:70189352-70189371 None:intergenic 40.0%
TCTCAAAAGGAGGATACTTC+AGG - chr7.2:70191071-70191090 MS.gene53792:intron 40.0%
TGAAAAACTCGAATGACGTC+GGG + chr7.2:70190998-70191017 None:intergenic 40.0%
TGAGACCATGTTTGAATTCG+CGG + chr7.2:70189932-70189951 None:intergenic 40.0%
TTGGAATATGCTCCTCCTTA+AGG - chr7.2:70189480-70189499 MS.gene53792:intron 40.0%
! ATTCTTCCCGGTGTCAATTT+GGG - chr7.2:70189514-70189533 MS.gene53792:intron 40.0%
! CGTGAAATGGGTTTCCAAAA+CGG + chr7.2:70188974-70188993 None:intergenic 40.0%
! TACTTCAGGAATGATGGAAG+CGG - chr7.2:70191085-70191104 MS.gene53792:intron 40.0%
! TTAAGGAGGAGCATATTCCA+AGG + chr7.2:70189481-70189500 None:intergenic 40.0%
!! ATGACATGCCTTTGGTGTTA+CGG + chr7.2:70191196-70191215 None:intergenic 40.0%
!! GAAGTATCCTCCTTTTGAGA+AGG + chr7.2:70191071-70191090 None:intergenic 40.0%
AAGTCTTCTGTCCCATTGCT+GGG - chr7.2:70190063-70190082 MS.gene53792:CDS 45.0%
ACAAGGCATGCTAATTTGGG+TGG - chr7.2:70189433-70189452 MS.gene53792:intron 45.0%
AGGGACAAATGACATGCCTT+TGG + chr7.2:70191204-70191223 None:intergenic 45.0%
AGGTTACCGATAGCGAAGAA+AGG + chr7.2:70189016-70189035 None:intergenic 45.0%
ATCGGAATTCGAATCCTGGA+TGG - chr7.2:70189297-70189316 MS.gene53792:intron 45.0%
ATGCTGAGCAAACGTGATGT+GGG + chr7.2:70190179-70190198 None:intergenic 45.0%
CAAGGCATGCTAATTTGGGT+GGG - chr7.2:70189434-70189453 MS.gene53792:intron 45.0%
CTAGTAACATGGAATTCCGC+TGG + chr7.2:70189353-70189372 None:intergenic 45.0%
CTCTGCCTTCAAAGAAACAC+AGG - chr7.2:70191024-70191043 MS.gene53792:intron 45.0%
GAATGCTTAGTGGAAGGTTG+CGG - chr7.2:70190915-70190934 MS.gene53792:CDS 45.0%
GGAGGATACTTCAGGAATGA+TGG - chr7.2:70191079-70191098 MS.gene53792:intron 45.0%
GGGTTGGAACTTACGTGAAA+TGG + chr7.2:70188987-70189006 None:intergenic 45.0%
TAACCTCGGCTGATGAGAAA+AGG - chr7.2:70190758-70190777 MS.gene53792:intron 45.0%
TATGCTGAGCAAACGTGATG+TGG + chr7.2:70190180-70190199 None:intergenic 45.0%
TCGAATCAGAGACCTTAAGG+AGG + chr7.2:70189495-70189514 None:intergenic 45.0%
TGACAAGAAGTTCTCGTTCG+AGG + chr7.2:70189036-70189055 None:intergenic 45.0%
TTTCAGGCAAAAGTTGCTCG+TGG - chr7.2:70190227-70190246 MS.gene53792:intron 45.0%
! CAGTTAAGGACGTATCGATC+AGG - chr7.2:70189271-70189290 MS.gene53792:CDS 45.0%
! GACGTATCGATCAGGAGTAT+CGG - chr7.2:70189279-70189298 MS.gene53792:CDS 45.0%
! GATTCTTCCCGGTGTCAATT+TGG - chr7.2:70189513-70189532 MS.gene53792:intron 45.0%
! GTCTCTGATTCGATTCTTCC+CGG - chr7.2:70189502-70189521 MS.gene53792:intron 45.0%
!! GACTCTAGAACACACAGAAC+AGG + chr7.2:70190153-70190172 None:intergenic 45.0%
!! GAGTATCGGAATTCGAATCC+TGG - chr7.2:70189293-70189312 MS.gene53792:intron 45.0%
AAAGCTGATGGAGGAAGGAG+TGG + chr7.2:70191168-70191187 None:intergenic 50.0%
ACTCCTTCCTCCATCAGCTT+TGG - chr7.2:70191167-70191186 MS.gene53792:CDS 50.0%
AGTTGCTCGTGGCTATGACA+TGG - chr7.2:70190238-70190257 MS.gene53792:intron 50.0%
CGAAGAAAGGTGAATCGGGT+TGG + chr7.2:70189003-70189022 None:intergenic 50.0%
GAAGTCTTCTGTCCCATTGC+TGG - chr7.2:70190062-70190081 MS.gene53792:CDS 50.0%
GGAAGCGGAAAATGCAGCTA+TGG - chr7.2:70191100-70191119 MS.gene53792:intron 50.0%
TAACATGGAATTCCGCTGGG+AGG + chr7.2:70189349-70189368 None:intergenic 50.0%
TAGCCCACCCAAATTGACAC+CGG + chr7.2:70189524-70189543 None:intergenic 50.0%
TGCTGAGCAAACGTGATGTG+GGG + chr7.2:70190178-70190197 None:intergenic 50.0%
TTTGGTCGCCGTAACACCAA+AGG - chr7.2:70191185-70191204 MS.gene53792:CDS 50.0%
! AAGCCTTTTCTCATCAGCCG+AGG + chr7.2:70190764-70190783 None:intergenic 50.0%
! AGCGCGTTTGGCTTCAATTG+AGG - chr7.2:70190091-70190110 MS.gene53792:CDS 50.0%
! TTCCCGGTGTCAATTTGGGT+GGG - chr7.2:70189518-70189537 MS.gene53792:intron 50.0%
AGCCCACCCAAATTGACACC+GGG + chr7.2:70189523-70189542 None:intergenic 55.0%
CATGCTAATTTGGGTGGGCC+TGG - chr7.2:70189439-70189458 MS.gene53792:intron 55.0%
CGACCAAAGCTGATGGAGGA+AGG + chr7.2:70191173-70191192 None:intergenic 55.0%
CGTGGGAAGGGATCTAACTC+GGG - chr7.2:70191236-70191255 MS.gene53792:CDS 55.0%
GCGTGGGAAGGGATCTAACT+CGG - chr7.2:70191235-70191254 MS.gene53792:CDS 55.0%
GTTACGGCGACCAAAGCTGA+TGG + chr7.2:70191180-70191199 None:intergenic 55.0%
TTCTGTCCCATTGCTGGGTG+TGG - chr7.2:70190068-70190087 MS.gene53792:CDS 55.0%
! CTTCCCGGTGTCAATTTGGG+TGG - chr7.2:70189517-70189536 MS.gene53792:intron 55.0%
ACGGCGACCAAAGCTGATGG+AGG + chr7.2:70191177-70191196 None:intergenic 60.0%
CGAGCTGTTCAGCGTGGGAA+GGG - chr7.2:70191224-70191243 MS.gene53792:CDS 60.0%
GCTAATTTGGGTGGGCCTGG+TGG - chr7.2:70189442-70189461 MS.gene53792:intron 60.0%
GTGGTGTTTGCTCGGGACCT+TGG - chr7.2:70189461-70189480 MS.gene53792:intron 60.0%
TCCCACGCTGAACAGCTCGA+GGG + chr7.2:70191223-70191242 None:intergenic 60.0%
TCCCTCGAGCTGTTCAGCGT+GGG - chr7.2:70191219-70191238 MS.gene53792:CDS 60.0%
TCGAGCTGTTCAGCGTGGGA+AGG - chr7.2:70191223-70191242 MS.gene53792:CDS 60.0%
TTCCCACGCTGAACAGCTCG+AGG + chr7.2:70191224-70191243 None:intergenic 60.0%
! TGGGCCTGGTGGTGTTTGCT+CGG - chr7.2:70189453-70189472 MS.gene53792:intron 60.0%
ACGCGCTCCACACCCAGCAA+TGG + chr7.2:70190078-70190097 None:intergenic 65.0%
CGCGCTCCACACCCAGCAAT+GGG + chr7.2:70190077-70190096 None:intergenic 65.0%
GGTCCCGAGCAAACACCACC+AGG + chr7.2:70189460-70189479 None:intergenic 65.0%
GTCCCTCGAGCTGTTCAGCG+TGG - chr7.2:70191218-70191237 MS.gene53792:CDS 65.0%
TGCTGGGTGTGGAGCGCGTT+TGG - chr7.2:70190079-70190098 MS.gene53792:CDS 65.0%
! GGGCCTGGTGGTGTTTGCTC+GGG - chr7.2:70189454-70189473 MS.gene53792:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 70188935 70191280 70188935 ID=MS.gene53792
chr7.2 mRNA 70188935 70191280 70188935 ID=MS.gene53792.t1;Parent=MS.gene53792
chr7.2 exon 70191155 70191280 70191155 ID=MS.gene53792.t1.exon1;Parent=MS.gene53792.t1
chr7.2 CDS 70191155 70191280 70191155 ID=cds.MS.gene53792.t1;Parent=MS.gene53792.t1
chr7.2 exon 70190851 70190941 70190851 ID=MS.gene53792.t1.exon2;Parent=MS.gene53792.t1
chr7.2 CDS 70190851 70190941 70190851 ID=cds.MS.gene53792.t1;Parent=MS.gene53792.t1
chr7.2 exon 70189956 70190149 70189956 ID=MS.gene53792.t1.exon3;Parent=MS.gene53792.t1
chr7.2 CDS 70189956 70190149 70189956 ID=cds.MS.gene53792.t1;Parent=MS.gene53792.t1
chr7.2 exon 70188935 70189303 70188935 ID=MS.gene53792.t1.exon4;Parent=MS.gene53792.t1
chr7.2 CDS 70188935 70189303 70188935 ID=cds.MS.gene53792.t1;Parent=MS.gene53792.t1
Gene Sequence

>MS.gene53792

ATGGAAGTGGAAAATCAAAATCCGGATTCAAATTTTCCGTTTTGGAAACCCATTTCACGTAAGTTCCAACCCGATTCACCTTTCTTCGCTATCGGTAACCTCGAACGAGAACTTCTTGTCAAACAGGTTCTTATTTTTATTTCATTCTAATAATTTCGTGTTTTATGTTATTTTTTCTTCTTCATATTCTTAATAGTAATAGTATTTGAATTTATATTTTTGATTAATGTGGCTTATACGACCTCAATTTCCGAGCCTTTATTGTGTTCGTCTAACTTTTTTTTTTTTAAAAAAAAAAAAATACTATATGATTGTGCTCTAGTGGTTAATAGACTTCAGTTAAGGACGTATCGATCAGGAGTATCGGAATTCGAATCCTGGATGGAACAAATATTGGTTAAACTTTATTTACCTCCCAGCGGAATTCCATGTTACTAGAGTCCTTTTATTTTGAGAACTAGAATGTTAAGAGTTAAGACCAAAATAATAGGTATTAGAACAAGGCATGCTAATTTGGGTGGGCCTGGTGGTGTTTGCTCGGGACCTTGGAATATGCTCCTCCTTAAGGTCTCTGATTCGATTCTTCCCGGTGTCAATTTGGGTGGGCTAGCTTAGCTTCTTCAAAAATAAAAAAGGAATAAGGCGTGTTGATTTAATGCACTGTTATTAGGTCTTACTCAAACTTCAGGTGATGTTCGATAGAAGTTGTTGAGATCATTACCCTTTGAGAACAGTTAATGATGGATTGTCATTTCTAGTTATAGTATCCTGTTATACTACTTGCTTACCTTTCTTATAGTTCTTGAAATTGTTTACTTTATATCTGTAATCATTTATGTGGAAAAACATATTTTGATTTGTGTTACACCATTGTATGTTTCAAATAACAATGAGTTTGACGAAATCACAATGGCACCGTGATTTTGTTGAAGCTCCAAAGTGTATCTTTTATCAACGTAACGGTGACATGTTGTAATTTTGCCAAACATACTTACCGCGAATTCAAACATGGTCTCATGTTTATTGAAGATTGTGATTTTTCCTAGAAGTTAATCTTTGGCTTTGAATTTATACTTATAAAATGGTAGCATGCACGCCTCATTTTGTAACATATTGCTTTGTGCAGGGAAGTCTTCTGTCCCATTGCTGGGTGTGGAGCGCGTTTGGCTTCAATTGAGGATTTTGAAAATCACTATAATGCAAGACATACTGCATCCTGTTCTGTGTGTTCTAGAGTCTACCCCACATCACGTTTGCTCAGCATACATGTATCCGAAGTTCATGATTCTTTCTTTCAGGCAAAAGTTGCTCGTGGCTATGACATGGTAGTGTATATGTCTAAACTCTGAATATGATTTAATTTAATGACATGGTAGTTGTAAGATATTCAATTTCGCTTTTTGTTTCTTCAAATTTCTTTACAGTGAAGTACTCATGTTTTTTCCTACCTTAATTTAAAATCTTACAAATTGCAACAAGAAAGACCTTTTTTATAATTTGGTTATTTCAAACAATCTTCAGAATATCCTTCTTCCTTTGTTACATCCTTTATATCTTCTATTTAATTTAATGTTTAGAGCTCATAGTTGAGTTTCTTAGAAGGTAGATCAAAGCAAAGACAGTCCATTAGTTAGTGGTAAAGCGAAACCAGAGAAAACTATAGTCCAAATCATCAAGGATTTGGAATCAAATGTTCAGGCGCTATAGATAATTAATGATACACCCAATCTTTGTCAAATCATTAAGAAAGATTTCAAATTAATGGTCTATCGTTATAGATAATTAATGATAGGGATATTATGATGTCATTTGATTCATGTAACTAACCTCGGCTGATGAGAAAAGGCTTTAGTCGCCTCTGTTGTTGTTGTGTAGTCTAAGCTAACATATTATTTTTTCGGATTCACATATGAATTTTCTCTATTAGGCGACAAATGACAATCTCTATAACATGGTTCTTATATCTTTGTCATATAGTATGAATGCTTAGTGGAAGGTTGCGGTTTGAAATTCAAAAGCTACAAAAGTAGGCAGCAGCATCTAGTTGACAAGCATAAATTCCCGACGTCATTCGAGTTTTTCAAGAAGGCTCTGCCTTCAAAGAAACACAGGATAAAGTCTCAACGCAAAAAACCTTCTCAAAAGGAGGATACTTCAGGAATGATGGAAGCGGAAAATGCAGCTATGGATGACCTTGTTTCAGCAGTATCTAGATTAAATACTTCGGACACCACTCCTTCCTCCATCAGCTTTGGTCGCCGTAACACCAAAGGCATGTCATTTGTCCCTCGAGCTGTTCAGCGTGGGAAGGGATCTAACTCGGGCTCATCTGTTACTAAGAAATAA
Protein sequence

>MS.gene53792.t1

MEVENQNPDSNFPFWKPISRKFQPDSPFFAIGNLERELLVKQLRTYRSGVSEFESWMEQILVKLYLPPSGIPFFCPIAGCGARLASIEDFENHYNARHTASCSVCSRVYPTSRLLSIHVSEVHDSFFQAKVARGYDMYECLVEGCGLKFKSYKSRQQHLVDKHKFPTSFEFFKKALPSKKHRIKSQRKKPSQKEDTSGMMEAENAAMDDLVSAVSRLNTSDTTPSSISFGRRNTKGMSFVPRAVQRGKGSNSGSSVTKK