AlfalfaGEDB | MS.gene53824

M. sativa cultivar XinJiangDaYe / MS.gene53824

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53824.t1	KEH21738.1	71.9	334	73	5	1	333	1	314	2.70E-123	451.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53824.t1	Q9FID9	40.7	332	176	9	10	334	497	814	1.5e-53	211.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53824.t1	A0A072TXY1	71.9	334	73	5	1	333	1	314	2.0e-123	451.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53824.t1	MTR_7g015800	71.642	335	74	5	1	334	1	315	1.06e-162	457
MS.gene53824.t1	MTR_7g015800	68.421	361	81	7	1	333	1	356	1.59e-161	456
MS.gene53824.t1	MTR_7g018130	62.647	340	110	8	1	331	1	332	7.74e-139	397
MS.gene53824.t1	MTR_7g015760	63.050	341	104	10	1	331	1	329	3.89e-135	388
MS.gene53824.t1	MTR_7g015750	63.324	349	101	13	1	331	4	343	5.33e-134	385
MS.gene53824.t1	MTR_7g015760	60.997	341	97	10	1	331	1	315	2.39e-126	365
MS.gene53824.t1	MTR_6g015805	41.772	316	168	8	20	332	517	819	6.55e-64	218
MS.gene53824.t1	MTR_5g047070	38.643	339	182	8	6	335	240	561	7.17e-64	212
MS.gene53824.t1	MTR_7g073660	39.169	337	184	9	3	334	506	826	9.33e-64	217
MS.gene53824.t1	MTR_2g030310	41.956	317	161	11	24	334	507	806	7.54e-63	214

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53824.t1	AT5G38990	40.541	333	177	9	9	334	496	814	6.44e-64	217
MS.gene53824.t1	AT5G39000	40.774	336	180	9	5	334	485	807	9.14e-64	217
MS.gene53824.t1	AT2G21480	40.541	333	172	11	1	328	491	802	1.22e-62	214
MS.gene53824.t1	AT3G51550	39.104	335	181	10	3	331	501	818	1.02e-61	211
MS.gene53824.t1	AT4G39110	41.987	312	158	10	22	328	510	803	1.30e-61	211
MS.gene53824.t1	AT5G54380	39.091	330	182	10	6	331	477	791	1.70e-61	210
MS.gene53824.t1	AT5G59700	41.139	316	168	9	16	328	460	760	3.81e-61	209
MS.gene53824.t1	AT3G46290	40.060	332	175	10	1	328	452	763	2.91e-60	207
MS.gene53824.t1	AT3G04690	40.635	315	165	9	22	331	501	798	7.10e-60	206
MS.gene53824.t1	AT5G28680	40.764	314	166	9	22	331	505	802	9.47e-60	206

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Find 60 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTTGAAATATGCAT+TGG	0.504966	7.4:-83834598	MS.gene53824:CDS
AAAGAAGATGAAATGGTCAA+TGG	0.505982	7.4:-83834673	MS.gene53824:CDS
AAAGGTTATGTCAAACATAA+TGG	0.427207	7.4:-83834859	MS.gene53824:CDS
AACCAATTTAAATATTCTCA+CGG	0.548369	7.4:+83832972	None:intergenic
AACTTGGATTATCCTTACAA+GGG	0.640387	7.4:-83834462	MS.gene53824:CDS
AATCACTCTCGTGGAAGAAA+AGG	0.484705	7.4:-83834615	MS.gene53824:CDS
AATCCAAGTTGGCAAAGTTT+TGG	0.353198	7.4:+83834475	None:intergenic
ACAAGGGAAGCTTTCTAAAT+CGG	0.370522	7.4:-83834446	MS.gene53824:CDS
ACATTTATCCGTGAAAGTTT+CGG	0.361078	7.4:+83833294	None:intergenic
ACCAGATGAAAGACCAGCTA+TGG	0.467493	7.4:-83833047	MS.gene53824:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGCTTGAAATATGCAT+TGG	-	chr7.4:83833405-83833424	MS.gene53824:intron	30.0%
AAAGAAGATGAAATGGTCAA+TGG	-	chr7.4:83833330-83833349	MS.gene53824:CDS	30.0%
AAATAGTCTATAATCATGGG+CGG	-	chr7.4:83833990-83834009	MS.gene53824:intron	30.0%
AACTTGGATTATCCTTACAA+GGG	-	chr7.4:83833541-83833560	MS.gene53824:intron	30.0%
ACATTTATCCGTGAAAGTTT+CGG	+	chr7.4:83834712-83834731	None:intergenic	30.0%
ACTCAACTCCTAATAAAAAG+GGG	+	chr7.4:83833882-83833901	None:intergenic	30.0%
ATTACCCATCAACAAAAGAT+GGG	+	chr7.4:83833827-83833846	None:intergenic	30.0%
ATTTATTTCACCGGAATGTT+TGG	-	chr7.4:83834890-83834909	MS.gene53824:CDS	30.0%
CGTGTATAAAGAAGATGAAA+TGG	-	chr7.4:83833323-83833342	MS.gene53824:CDS	30.0%
TATTACCCATCAACAAAAGA+TGG	+	chr7.4:83833828-83833847	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	83832979	83835046	83832979	ID=MS.gene53824
chr7.4	mRNA	83832979	83835046	83832979	ID=MS.gene53824.t1;Parent=MS.gene53824
chr7.4	exon	83834413	83835046	83834413	ID=MS.gene53824.t1.exon1;Parent=MS.gene53824.t1
chr7.4	CDS	83834413	83835046	83834413	ID=cds.MS.gene53824.t1;Parent=MS.gene53824.t1
chr7.4	exon	83832979	83833352	83832979	ID=MS.gene53824.t1.exon2;Parent=MS.gene53824.t1
chr7.4	CDS	83832979	83833352	83832979	ID=cds.MS.gene53824.t1;Parent=MS.gene53824.t1

Gene Sequence

>MS.gene53824

ATGCTTGCAAAATACTCAAAGCATAAAAGTTCTTCCAAGAAACAATGTTCAATTATAAATGAGCTATGCCGTCAATTTTCTCTGGATGATCTTATGAAAGCTACTAATAACTTTGATGTAGATCGAATTATTGGACGACTAGGCAGATGCAGCTATAAAGTGTACAAAGGTTATGTCAAACATAATGGTGAAAATGATTATCCAATAGCACTGATACGGATGAGAAATGTAGTCAACAAAGAAGAACAACACTTCAAGAATGAAATTGAACTCCACTGCCAGCTTCGTCACCCAAATTTGATATCTTTGATAGGATTTTGTGACGAGAAAAATGAGAAAATTCTCGTGTATAAAGAAGATGAAATGGTCAATGGATCTCTCGGTGATCACTTATGTTTAAGGGATATGGAATCACTCTCGTGGAAGAAAAGGCTTGAAATATGCATTGGAGCTGCAAAAGGACTACACTATCTTCACACAGGAACAAAGCGCCCGATTTTCCACCGTGATGTAAAGCCTCAAAACATTCTTTTAGATAACAATATGGAACCAAAACTTTGCCAACTTGGATTATCCTTACAAGGGAAGCTTTCTAAATCGGAGTCAATACCAATTAAACTCGACGACATTTCTGGTAAATTATGTTTCTTTTATTTTTATAATAAATACTCAAATTAGTTATGCACATTCTTATTTACTTGTCAATAAAAGCTGCGTAGGTTTACCCATATGAGCATAGACTAATCAAAATCATTTATCTATCTTCAATTGTTTATAACATAAATAGCAAAAGATAAATGAATGATTTTGATTAGTGTCAATTCAGATGAGTAACATAACATCTACCCATCTTTTGTTGATGGGTAATATAGTTGTCACTTTTTTTATTTTATGTTTAATCCCCTTTTTATTAGGAGTTGAGTTTTTCCAAATACAATTCCTCACCACCGTACTATTGGTCTGACCTGGTGCATAAAGTATAATTTATATTAGTTTTAATTCATCCTTCCAAAATAGTCTATAATCATGGGCGGATCCAGCGTGAAACATGGTGTGGCAGCTGCCACACCAGATTATTTCCTACTAAGTATATATATAGTATAAGTCATCTATATGTCAAAGATTCTTCGGTAGCCTAGCGGTTATGTTTGATGGTGGCTTGCAGGTCCTCTGTTCAACTCTTGGCGAGTTGCTGTTTTTCTTCTTGGCGAGTTGCTGTTTTTGATTTTTTTTTCTTGGCGAGTTGCTGTTTTTGATTTTTTTTTTAAGTTATTAATATTTGATTTTTTTTTTAAGTTATTAATATTAAAAATGATGGTGTTGCAGGGAGTCGAACCTGTAACACTATGGTATAATGCCCTCGCCCAAACCACTTGGCTGCAGTTTTTAAGCTGTCAAAACTTTTCTCTGTTAATATATATAGTTTCTTTGCAAATTTTGCCACACCAATATCAACGGTCTAGATCCGCCCCACCTGTCTATAATGTCTTAGGTACCACATGTTAGACCCTTATGTGGGACTAATGTGTTCTAGTATTTTCATTCTCGGGCACTAATTATTGGGAAAAAAAAATCTTAAGAACTAAAATGGTATATGCAATTTTTTGTCATGATCTAATTTTGGCCTTTTCACGTATTTTAATAACTTGGCTGCAGATAATTCTAGAAGTTAGACTAAATGCTTTTGCTGACAGGTACATTAGGTTTCATTGCACCAGAGTATTACGTAACCGAAACTTTCACGGATAAATGTGACGTTTTCTCCTTTGGTATGGTTCTACTTCAAGTAATTTCATGCATAAACGACTTTTACACCATCCCTGAGAAGATGAACATCCTTCAAGAAAAAATCATTGAGAAGAGGGACATGTTAGAGGAACGAAATAAAATTATTGATCCCATTCTCATTAGATTTATTTCACCGGAATGTTTGGCAGTGTTCATGAATATCACGAAAAGATGCTTGAATACAGGAGAACCAGATGAAAGACCAGCTATGGGTGAGGTTGAGGTTGAACTTGAGCATGCTCTGGCACTGCAGGAGGAAGCAGACCGTGAGAATATTTAA

Protein sequence

>MS.gene53824.t1

MLAKYSKHKSSSKKQCSIINELCRQFSLDDLMKATNNFDVDRIIGRLGRCSYKVYKGYVKHNGENDYPIALIRMRNVVNKEEQHFKNEIELHCQLRHPNLISLIGFCDEKNEKILVYKEDEMVNGSLGDHLCLRDMESLSWKKRLEICIGAAKGLHYLHTGTKRPIFHRDVKPQNILLDNNMEPKLCQLGLSLQGKLSKSESIPIKLDDISGTLGFIAPEYYVTETFTDKCDVFSFGMVLLQVISCINDFYTIPEKMNILQEKIIEKRDMLEERNKIIDPILIRFISPECLAVFMNITKRCLNTGEPDERPAMGEVEVELEHALALQEEADRENI