AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53936

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53936.t1 MTR_3g006370 93.617 235 9 1 1 235 1 229 2.03e-162 448
MS.gene53936.t1 MTR_4g067290 43.429 175 91 3 52 222 52 222 2.25e-39 136
MS.gene53936.t1 MTR_4g067290 43.429 175 91 3 52 222 72 242 2.99e-39 136
MS.gene53936.t1 MTR_4g067290 43.429 175 91 3 52 222 70 240 3.06e-39 136
MS.gene53936.t1 MTR_4g067290 42.938 177 91 3 52 222 52 224 4.42e-39 135
MS.gene53936.t1 MTR_4g067290 42.938 177 91 3 52 222 72 244 5.67e-39 135
MS.gene53936.t1 MTR_2g098920 40.761 184 100 3 52 230 76 255 9.32e-39 135
MS.gene53936.t1 MTR_4g067290 42.938 177 91 3 52 222 112 284 2.29e-38 135
MS.gene53936.t1 MTR_2g098880 37.306 193 101 5 50 226 55 243 2.69e-36 129
MS.gene53936.t1 MTR_2g098880 37.306 193 101 5 50 226 67 255 4.81e-36 128
MS.gene53936.t1 MTR_2g070590 37.736 106 64 2 56 160 17 121 5.36e-14 66.6
MS.gene53936.t1 MTR_0402s0040 37.500 104 63 2 56 158 26 128 1.16e-12 67.0
MS.gene53936.t1 MTR_5g015480 38.095 105 63 2 56 159 56 159 5.15e-12 64.3
MS.gene53936.t1 MTR_1g057920 39.560 91 53 2 56 145 34 123 7.55e-12 61.2
MS.gene53936.t1 MTR_6g017200 37.113 97 59 2 56 151 58 153 2.00e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53936.t1 AT2G43280 73.224 183 48 1 50 232 17 198 2.66e-100 290
MS.gene53936.t1 AT2G43280 74.233 163 42 0 70 232 1 163 2.40e-92 269
MS.gene53936.t1 AT3G07500 48.404 188 90 3 46 227 23 209 7.00e-52 167
MS.gene53936.t1 AT4G12850 43.646 181 90 2 50 226 5 177 1.21e-46 153
MS.gene53936.t1 AT3G59470 47.191 178 83 4 55 226 69 241 2.28e-43 147
MS.gene53936.t1 AT3G59470 47.191 178 83 4 55 226 69 241 2.28e-43 147
MS.gene53936.t1 AT3G59470 47.191 178 83 4 55 226 81 253 2.81e-43 147
MS.gene53936.t1 AT4G12850 50.442 113 44 2 50 158 5 109 5.13e-31 111
MS.gene53936.t1 AT4G12850 50.442 113 44 2 50 158 5 109 5.59e-31 111
MS.gene53936.t1 AT4G38180 53.271 107 48 1 55 159 72 178 7.63e-25 102
MS.gene53936.t1 AT2G32250 35.115 131 79 2 52 182 34 158 1.94e-18 84.3
MS.gene53936.t1 AT2G32250 35.115 131 79 2 52 182 34 158 1.94e-18 84.3
MS.gene53936.t1 AT2G32250 35.115 131 79 2 52 182 34 158 2.06e-18 84.3
MS.gene53936.t1 AT2G32250 35.115 131 79 2 52 182 34 158 2.06e-18 84.3
MS.gene53936.t1 AT2G32250 35.115 131 79 2 52 182 34 158 2.06e-18 84.3
MS.gene53936.t1 AT2G32250 35.115 131 79 2 52 182 34 158 2.23e-18 84.0
MS.gene53936.t1 AT2G32250 34.959 123 74 2 60 182 1 117 3.20e-17 80.9
MS.gene53936.t1 AT2G32250 34.959 123 74 2 60 182 1 117 3.24e-17 80.9
MS.gene53936.t1 AT3G06250 41.346 104 47 1 55 158 189 278 6.34e-17 79.7
MS.gene53936.t1 AT3G06250 35.965 114 59 1 55 168 27 126 4.21e-16 77.4
MS.gene53936.t1 AT3G06250 41.346 104 47 1 55 158 189 278 6.34e-17 79.7
MS.gene53936.t1 AT3G06250 35.965 114 59 1 55 168 27 126 4.21e-16 77.4
MS.gene53936.t1 AT3G06250 41.346 104 47 1 55 158 189 278 6.34e-17 79.7
MS.gene53936.t1 AT3G06250 35.965 114 59 1 55 168 27 126 4.21e-16 77.4
MS.gene53936.t1 AT5G18960 40.385 104 48 1 55 158 210 299 1.60e-16 78.6
MS.gene53936.t1 AT5G18960 34.400 125 61 2 55 172 42 152 2.50e-16 78.2
MS.gene53936.t1 AT5G18960 40.385 104 48 1 55 158 210 299 1.60e-16 78.6
MS.gene53936.t1 AT5G18960 34.400 125 61 2 55 172 42 152 2.50e-16 78.2
MS.gene53936.t1 AT4G15090 34.328 134 77 3 33 159 24 153 1.99e-16 78.6
MS.gene53936.t1 AT4G15090 34.328 134 77 3 33 159 24 153 1.99e-16 78.6
MS.gene53936.t1 AT4G15090 34.328 134 77 3 33 159 24 153 1.99e-16 78.6
MS.gene53936.t1 AT4G15090 34.328 134 77 3 33 159 24 153 1.99e-16 78.6
MS.gene53936.t1 AT4G15090 34.328 134 77 3 33 159 24 153 1.99e-16 78.6
MS.gene53936.t1 AT2G27110 34.247 146 71 5 16 161 18 138 3.36e-15 74.7
MS.gene53936.t1 AT2G27110 34.247 146 71 5 16 161 18 138 3.36e-15 74.7
MS.gene53936.t1 AT1G76320 33.803 142 87 4 60 200 1 136 3.76e-15 74.7
MS.gene53936.t1 AT1G76320 33.803 142 87 4 60 200 1 136 3.76e-15 74.7
MS.gene53936.t1 AT1G76320 33.803 142 87 4 60 200 1 136 3.83e-15 74.7
MS.gene53936.t1 AT1G76320 39.623 106 58 3 60 165 1 100 4.73e-15 74.3
MS.gene53936.t1 AT3G22170 33.582 134 72 3 55 176 69 197 1.36e-14 73.2
MS.gene53936.t1 AT3G22170 33.582 134 72 3 55 176 69 197 1.36e-14 73.2
MS.gene53936.t1 AT4G19990 33.077 130 71 2 45 160 10 137 1.50e-14 72.8
MS.gene53936.t1 AT4G19990 33.077 130 71 2 45 160 10 137 1.50e-14 72.8
MS.gene53936.t1 AT4G19990 33.077 130 71 2 45 160 10 137 1.57e-14 72.8
MS.gene53936.t1 AT4G19990 33.077 130 71 2 45 160 24 151 1.74e-14 72.8
MS.gene53936.t1 AT4G19990 33.077 130 71 2 45 160 10 137 1.83e-14 72.8
MS.gene53936.t1 AT4G19990 33.077 130 71 2 45 160 10 137 1.83e-14 72.8

Find 62 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTTCTGGGGATGGTAATT+TGG 0.158133 3.2:+1056826 MS.gene53936:CDS
AGTGACGGGGCGGAAGTTTC+TGG 0.203404 3.2:+1056812 MS.gene53936:CDS
GTTTCTGGGGATGGTAATTT+GGG 0.242501 3.2:+1056827 MS.gene53936:CDS
AGATCGGAAAAGAGTTATTC+TGG 0.296771 3.2:+1057877 MS.gene53936:CDS
AGTATGATCAGTCCGGAAAA+TGG 0.304694 3.2:+1058208 MS.gene53936:CDS
AGGATTCTCGCCCGCAGGTT+TGG 0.350053 3.2:+1058081 MS.gene53936:CDS
CCGCAGGTTTGGATGTAATA+AGG 0.351849 3.2:+1058092 MS.gene53936:CDS
ATTATGGATTTACCATTGTT+TGG 0.357489 3.2:-1058293 None:intergenic
TGAGAAGGATAAGAAAATTC+AGG 0.371151 3.2:+1058700 MS.gene53936:CDS
AGTTATTCTGGGAGAGAGTT+GGG 0.374971 3.2:+1057889 MS.gene53936:CDS
TGATCATGACCATGCTGTTA+AGG 0.378319 3.2:+1057936 MS.gene53936:CDS
ACAAATTCCATGCCTTCATA+TGG 0.406605 3.2:-1057961 None:intergenic
CTGGCCCTTGGTTTACGAAC+TGG 0.417375 3.2:-1058150 None:intergenic
TCCGATCTACACCCATCATT+CGG 0.425751 3.2:-1057862 None:intergenic
CTGGTGCAAAAGCTCTTCTA+TGG 0.431453 3.2:-1058870 None:intergenic
CCTTCCCTAGTGCTGGCCCT+TGG 0.440050 3.2:-1058162 None:intergenic
AAATATCTTAGCAGCATCTT+CGG 0.446381 3.2:-1057986 None:intergenic
GAGTTATTCTGGGAGAGAGT+TGG 0.452971 3.2:+1057888 MS.gene53936:CDS
CAGCACTAGGGAAGGTTGTA+AGG 0.453970 3.2:+1058170 MS.gene53936:CDS
GGTCATTGTGTCAGCATACA+AGG 0.462427 3.2:+1058117 MS.gene53936:CDS
GTGACGGGGCGGAAGTTTCT+GGG 0.469581 3.2:+1056813 MS.gene53936:CDS
GTATGATCAGTCCGGAAAAT+GGG 0.472464 3.2:+1058209 MS.gene53936:CDS
ATGGAATCTAGATTAGTTGA+TGG 0.477267 3.2:+1056788 MS.gene53936:CDS
AGGAACTAACAGTAGAGCTT+CGG 0.480103 3.2:+1058720 MS.gene53936:CDS
GTCAGCATACAAGGGAAACT+TGG 0.481454 3.2:+1058126 MS.gene53936:CDS
TAATGCGTGTGATGTCTTGT+CGG 0.484944 3.2:+1058040 MS.gene53936:CDS
GTAAACCAAGGGCCAGCACT+AGG 0.487984 3.2:+1058157 MS.gene53936:CDS
ACATAATGCAGGGCTACGTC+TGG 0.504943 3.2:-1058889 None:intergenic
CATTACAAATCCTACATGTC+GGG 0.513479 3.2:-1058022 None:intergenic
TGTGATGTCTTGTCGGCGCT+CGG 0.527714 3.2:+1058047 MS.gene53936:CDS
ATGGTAGGATTCTCGCCCGC+AGG 0.530043 3.2:+1058076 MS.gene53936:CDS
CATATCAAGTATGATCAGTC+CGG 0.531806 3.2:+1058201 MS.gene53936:CDS
CTTACAACCTTCCCTAGTGC+TGG 0.535860 3.2:-1058169 None:intergenic
GATCGGAAAAGAGTTATTCT+GGG 0.541626 3.2:+1057878 MS.gene53936:CDS
GATGAATATGCCCGACATGT+AGG 0.545888 3.2:+1058012 MS.gene53936:CDS
TAAACCAAGGGCCAGCACTA+GGG 0.547162 3.2:+1058158 MS.gene53936:CDS
ACCGAATGATGGGTGTAGAT+CGG 0.551733 3.2:+1057861 MS.gene53936:CDS
GATTAGTTGATGGAAGTGAC+GGG 0.556222 3.2:+1056798 MS.gene53936:CDS
GTGACAGTGGAACCGAATGA+TGG 0.566161 3.2:+1057850 MS.gene53936:intron
CTTATTACATCCAAACCTGC+GGG 0.573213 3.2:-1058091 None:intergenic
GCATTACAAATCCTACATGT+CGG 0.573445 3.2:-1058023 None:intergenic
ATTGTTTGGCGTGCTTCACG+TGG 0.576935 3.2:-1058279 None:intergenic
AGATTAGTTGATGGAAGTGA+CGG 0.582091 3.2:+1056797 MS.gene53936:CDS
GGGGCGGAAGTTTCTGGGGA+TGG 0.587261 3.2:+1056818 MS.gene53936:CDS
GCTGTTAAGGAACCATATGA+AGG 0.588056 3.2:+1057949 MS.gene53936:CDS
TAAGGAACCATATGAAGGCA+TGG 0.594188 3.2:+1057954 MS.gene53936:CDS
TGACGGGGCGGAAGTTTCTG+GGG 0.598363 3.2:+1056814 MS.gene53936:CDS
CCAAGGGCCAGCACTAGGGA+AGG 0.608378 3.2:+1058162 MS.gene53936:CDS
CATATGGTTCCTTAACAGCA+TGG 0.608918 3.2:-1057945 None:intergenic
TGTCGGCGCTCGGAAAGAGA+TGG 0.610372 3.2:+1058057 MS.gene53936:CDS
TGACAGTGGAACCGAATGAT+GGG 0.614797 3.2:+1057851 MS.gene53936:intron
CATGGTCATGATCAGAGATA+CGG 0.615572 3.2:-1057927 None:intergenic
ACGTGAAGCACGCCAAACAA+TGG 0.620174 3.2:+1058281 MS.gene53936:CDS
TTGGTCCAGTTCGTAAACCA+AGG 0.623231 3.2:+1058145 MS.gene53936:CDS
CAGGTTTGGATGTAATAAGG+AGG 0.625678 3.2:+1058095 MS.gene53936:CDS
CCTTATTACATCCAAACCTG+CGG 0.631158 3.2:-1058092 None:intergenic
AGGTTTGGATGTAATAAGGA+GGG 0.648013 3.2:+1058096 MS.gene53936:CDS
TGGTCCAGTTCGTAAACCAA+GGG 0.657286 3.2:+1058146 MS.gene53936:CDS
GTCATTGTGTCAGCATACAA+GGG 0.663280 3.2:+1058118 MS.gene53936:CDS
GGCGCTCGGAAAGAGATGGT+AGG 0.693531 3.2:+1058061 MS.gene53936:CDS
AGTTGATGGAAGTGACGGGG+CGG 0.718997 3.2:+1056802 MS.gene53936:CDS
ATTAGTTGATGGAAGTGACG+GGG 0.720299 3.2:+1056799 MS.gene53936:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTATCAATTAAAAAATA+TGG - chr3.2:1058384-1058403 None:intergenic 10.0%
!! AAAATGAATTAGTATTATGA+GGG + chr3.2:1057389-1057408 MS.gene53936:intron 15.0%
!! AATGAAATGAAAATTATGAA+GGG + chr3.2:1057426-1057445 MS.gene53936:intron 15.0%
!! ATAAAAAATTCATTCTATTC+AGG - chr3.2:1057461-1057480 None:intergenic 15.0%
!! ATTATATTATATAACATCTC+TGG + chr3.2:1058607-1058626 MS.gene53936:intron 15.0%
!! TAATGAAATGAAAATTATGA+AGG + chr3.2:1057425-1057444 MS.gene53936:intron 15.0%
!!! CATAATTTTCATTTCATTAA+GGG - chr3.2:1057424-1057443 None:intergenic 15.0%
!!! TCATAATTTTCATTTCATTA+AGG - chr3.2:1057425-1057444 None:intergenic 15.0%
!!! TCTTCATTTCTATATTTTTT+TGG + chr3.2:1058462-1058481 MS.gene53936:intron 15.0%
!! ATGAAATGAAAATTATGAAG+GGG + chr3.2:1057427-1057446 MS.gene53936:intron 20.0%
!! CAAAATGAATTAGTATTATG+AGG + chr3.2:1057388-1057407 MS.gene53936:intron 20.0%
!!! ATCCATAATTCTTATTTAAC+CGG + chr3.2:1058307-1058326 MS.gene53936:intron 20.0%
!!! CATTTTGGAATATAAATGAT+AGG - chr3.2:1057375-1057394 None:intergenic 20.0%
!!! CTCATAATACTAATTCATTT+TGG - chr3.2:1057390-1057409 None:intergenic 20.0%
!!! GAAGCTAATATTATTGTTTT+TGG + chr3.2:1058518-1058537 MS.gene53936:intron 20.0%
!!! TGATTGCTTTAAATGAAAAA+TGG - chr3.2:1057751-1057770 None:intergenic 20.0%
! AAACATTTCAACTTGGAATT+TGG + chr3.2:1057314-1057333 MS.gene53936:intron 25.0%
! AACATTTCAACTTGGAATTT+GGG + chr3.2:1057315-1057334 MS.gene53936:intron 25.0%
! AACCGGTTAAATAAGAATTA+TGG - chr3.2:1058312-1058331 None:intergenic 25.0%
! AAGAAACCTATAGTTATTAG+AGG - chr3.2:1057671-1057690 None:intergenic 25.0%
! AAGATAAATTATTGTGACAG+TGG + chr3.2:1057837-1057856 MS.gene53936:intron 25.0%
! ATGCAAAAATAAGTTATGCA+TGG - chr3.2:1057796-1057815 None:intergenic 25.0%
! ATTATGGATTTACCATTGTT+TGG - chr3.2:1058296-1058315 None:intergenic 25.0%
! TTTATTCGATAGTTGAATGA+AGG + chr3.2:1057476-1057495 MS.gene53936:intron 25.0%
!! AAATTCCAAGTTGAAATGTT+TGG - chr3.2:1057315-1057334 None:intergenic 25.0%
!! ACAAATTTTGAGCTAAAATG+TGG - chr3.2:1057050-1057069 None:intergenic 25.0%
!! CAAATTTTGAGCTAAAATGT+GGG - chr3.2:1057049-1057068 None:intergenic 25.0%
!! TCTGTTGGAAATACTATTTT+TGG - chr3.2:1057275-1057294 None:intergenic 25.0%
AAATATCTTAGCAGCATCTT+CGG - chr3.2:1057989-1058008 None:intergenic 30.0%
TAGAGCTTCGGATTAAAAAA+CGG + chr3.2:1058732-1058751 MS.gene53936:CDS 30.0%
TGAAAATTATGAAGGGGATT+AGG + chr3.2:1057433-1057452 MS.gene53936:intron 30.0%
TGAAAGGATGTTTACTAAGA+GGG - chr3.2:1057545-1057564 None:intergenic 30.0%
TGAGAAGGATAAGAAAATTC+AGG + chr3.2:1058700-1058719 MS.gene53936:CDS 30.0%
TTAGAGCCTCTAATAACTAT+AGG + chr3.2:1057662-1057681 MS.gene53936:intron 30.0%
TTAGTATTATGAGGGTGATT+AGG + chr3.2:1057397-1057416 MS.gene53936:intron 30.0%
TTGAAAGGATGTTTACTAAG+AGG - chr3.2:1057546-1057565 None:intergenic 30.0%
! ATAGTTATTAGAGGCTCTAA+AGG - chr3.2:1057662-1057681 None:intergenic 30.0%
! ATATTAGCTTCTTCTTACCA+AGG - chr3.2:1058509-1058528 None:intergenic 30.0%
! ATGGAATCTAGATTAGTTGA+TGG + chr3.2:1056788-1056807 MS.gene53936:CDS 30.0%
! GTTTTCCAAAGATTGAAAAC+CGG - chr3.2:1058329-1058348 None:intergenic 30.0%
!! AGAGAATTTGTTATTCACCA+GGG - chr3.2:1057236-1057255 None:intergenic 30.0%
!! TAGAGAATTTGTTATTCACC+AGG - chr3.2:1057237-1057256 None:intergenic 30.0%
!! TAGTTATTAGAGGCTCTAAA+GGG - chr3.2:1057661-1057680 None:intergenic 30.0%
!! TTCTTGTATGAGGTATTGAA+AGG - chr3.2:1057561-1057580 None:intergenic 30.0%
!! TTTAACCGGTTTTCAATCTT+TGG + chr3.2:1058321-1058340 MS.gene53936:intron 30.0%
!!! GTTTTTGTTTTAGGATGAGA+AGG + chr3.2:1058685-1058704 MS.gene53936:intron 30.0%
!!! TTCTGCGTTGTTTTTGTTTT+AGG + chr3.2:1058676-1058695 MS.gene53936:intron 30.0%
ACAAATTCCATGCCTTCATA+TGG - chr3.2:1057964-1057983 None:intergenic 35.0%
ACATAGCTACAACACATTGT+AGG - chr3.2:1057212-1057231 None:intergenic 35.0%
AGATCGGAAAAGAGTTATTC+TGG + chr3.2:1057877-1057896 MS.gene53936:CDS 35.0%
AGGTTTGGATGTAATAAGGA+GGG + chr3.2:1058096-1058115 MS.gene53936:CDS 35.0%
CAAGACCAAACATTTCAACT+TGG + chr3.2:1057307-1057326 MS.gene53936:intron 35.0%
CATATCAAGTATGATCAGTC+CGG + chr3.2:1058201-1058220 MS.gene53936:CDS 35.0%
CATTACAAATCCTACATGTC+GGG - chr3.2:1058025-1058044 None:intergenic 35.0%
CGATAGTTGAATGAAGGAAA+AGG + chr3.2:1057482-1057501 MS.gene53936:intron 35.0%
GATCGGAAAAGAGTTATTCT+GGG + chr3.2:1057878-1057897 MS.gene53936:CDS 35.0%
GCATTACAAATCCTACATGT+CGG - chr3.2:1058026-1058045 None:intergenic 35.0%
GTAGCTTAAGCAAATTACTG+AGG - chr3.2:1057011-1057030 None:intergenic 35.0%
GTTGTCTAGTTGTGTATATG+TGG + chr3.2:1057163-1057182 MS.gene53936:intron 35.0%
TAAAACGTTATATTGTGCCC+AGG + chr3.2:1058398-1058417 MS.gene53936:intron 35.0%
TACAAGAACCACGACAAAAA+CGG + chr3.2:1057573-1057592 MS.gene53936:intron 35.0%
TCACAAAGAGGAGTTAAAAC+AGG - chr3.2:1058561-1058580 None:intergenic 35.0%
!! AGATTAGTTGATGGAAGTGA+CGG + chr3.2:1056797-1056816 MS.gene53936:CDS 35.0%
!! CTTTGTTATCACCCATTTTC+CGG - chr3.2:1058223-1058242 None:intergenic 35.0%
!!! TGTTTTAACTCCTCTTTGTG+AGG + chr3.2:1058560-1058579 MS.gene53936:intron 35.0%
AGGAACTAACAGTAGAGCTT+CGG + chr3.2:1058720-1058739 MS.gene53936:CDS 40.0%
AGGCATGTATGGAAGAAAGA+AGG + chr3.2:1058418-1058437 MS.gene53936:intron 40.0%
AGTATGATCAGTCCGGAAAA+TGG + chr3.2:1058208-1058227 MS.gene53936:CDS 40.0%
CAGGTTTGGATGTAATAAGG+AGG + chr3.2:1058095-1058114 MS.gene53936:CDS 40.0%
CATATGGTTCCTTAACAGCA+TGG - chr3.2:1057948-1057967 None:intergenic 40.0%
CATGGTCATGATCAGAGATA+CGG - chr3.2:1057930-1057949 None:intergenic 40.0%
CCAAATCTTTCCTCACAAAG+AGG - chr3.2:1058573-1058592 None:intergenic 40.0%
CCTCTTTGTGAGGAAAGATT+TGG + chr3.2:1058570-1058589 MS.gene53936:intron 40.0%
CCTTATTACATCCAAACCTG+CGG - chr3.2:1058095-1058114 None:intergenic 40.0%
CTTATTACATCCAAACCTGC+GGG - chr3.2:1058094-1058113 None:intergenic 40.0%
GCTGTTAAGGAACCATATGA+AGG + chr3.2:1057949-1057968 MS.gene53936:CDS 40.0%
GTATGATCAGTCCGGAAAAT+GGG + chr3.2:1058209-1058228 MS.gene53936:CDS 40.0%
GTCATTGTGTCAGCATACAA+GGG + chr3.2:1058118-1058137 MS.gene53936:CDS 40.0%
TAAAACGTTGTATCGTGCCT+TGG + chr3.2:1058489-1058508 MS.gene53936:intron 40.0%
TAAGGAACCATATGAAGGCA+TGG + chr3.2:1057954-1057973 MS.gene53936:CDS 40.0%
TAATGCGTGTGATGTCTTGT+CGG + chr3.2:1058040-1058059 MS.gene53936:CDS 40.0%
TCTTTCTTCCATACATGCCT+GGG - chr3.2:1058418-1058437 None:intergenic 40.0%
TGATCATGACCATGCTGTTA+AGG + chr3.2:1057936-1057955 MS.gene53936:CDS 40.0%
TGCTAAACACAGTGGAAAGT+CGG + chr3.2:1057099-1057118 MS.gene53936:intron 40.0%
TTAAGCGATGCTAAACACAG+TGG + chr3.2:1057091-1057110 MS.gene53936:intron 40.0%
TTCTTTCTTCCATACATGCC+TGG - chr3.2:1058419-1058438 None:intergenic 40.0%
TTTGTCGTGGTTCTTGTATG+AGG - chr3.2:1057571-1057590 None:intergenic 40.0%
! AGTTATTCTGGGAGAGAGTT+GGG + chr3.2:1057889-1057908 MS.gene53936:CDS 40.0%
! AGTTTCTGGGGATGGTAATT+TGG + chr3.2:1056826-1056845 MS.gene53936:CDS 40.0%
! GTTTCTGGGGATGGTAATTT+GGG + chr3.2:1056827-1056846 MS.gene53936:CDS 40.0%
!! ATTAGTTGATGGAAGTGACG+GGG + chr3.2:1056799-1056818 MS.gene53936:CDS 40.0%
!! GATTAGTTGATGGAAGTGAC+GGG + chr3.2:1056798-1056817 MS.gene53936:CDS 40.0%
!! GTTTCTTACCGTTTTTGTCG+TGG - chr3.2:1057584-1057603 None:intergenic 40.0%
AATGAAGGAAAAGGCGATGC+AGG + chr3.2:1057491-1057510 MS.gene53936:intron 45.0%
ATATTGTGCCCAGGCATGTA+TGG + chr3.2:1058407-1058426 MS.gene53936:intron 45.0%
CCGCAGGTTTGGATGTAATA+AGG + chr3.2:1058092-1058111 MS.gene53936:CDS 45.0%
CTGGTGCAAAAGCTCTTCTA+TGG - chr3.2:1058873-1058892 None:intergenic 45.0%
CTGTCTCAAAGAGACATCAC+CGG + chr3.2:1057611-1057630 MS.gene53936:intron 45.0%
GAATTCCTGCATCCTGTTCA+TGG + chr3.2:1056936-1056955 MS.gene53936:intron 45.0%
GATGAATATGCCCGACATGT+AGG + chr3.2:1058012-1058031 MS.gene53936:CDS 45.0%
GGGACACTGAGAAAGATGAA+TGG + chr3.2:1057335-1057354 MS.gene53936:intron 45.0%
GGTCATTGTGTCAGCATACA+AGG + chr3.2:1058117-1058136 MS.gene53936:CDS 45.0%
GTCAGCATACAAGGGAAACT+TGG + chr3.2:1058126-1058145 MS.gene53936:CDS 45.0%
TCCGATCTACACCCATCATT+CGG - chr3.2:1057865-1057884 None:intergenic 45.0%
TGACAGTGGAACCGAATGAT+GGG + chr3.2:1057851-1057870 MS.gene53936:intron 45.0%
TGGTCCAGTTCGTAAACCAA+GGG + chr3.2:1058146-1058165 MS.gene53936:CDS 45.0%
TGTGTTGTAGCTATGTACCC+TGG + chr3.2:1057216-1057235 MS.gene53936:intron 45.0%
TTGAGTCTTGCATGCTCTGT+TGG - chr3.2:1057290-1057309 None:intergenic 45.0%
TTGGTCCAGTTCGTAAACCA+AGG + chr3.2:1058145-1058164 MS.gene53936:CDS 45.0%
! GAGTTATTCTGGGAGAGAGT+TGG + chr3.2:1057888-1057907 MS.gene53936:CDS 45.0%
! TCTAAAGGGTTTTTCTCCCC+AGG - chr3.2:1057647-1057666 None:intergenic 45.0%
! TGGGAAAGAGCTTCTGGTTA+AGG + chr3.2:1057514-1057533 MS.gene53936:intron 45.0%
!! ACCGAATGATGGGTGTAGAT+CGG + chr3.2:1057861-1057880 MS.gene53936:CDS 45.0%
!! GTCTCTTTGAGACAGACTAC+TGG - chr3.2:1057606-1057625 None:intergenic 45.0%
AAGGAAAAGGCGATGCAGGT+GGG + chr3.2:1057495-1057514 MS.gene53936:intron 50.0%
ACCAGACCTAAGCCATGAAC+AGG - chr3.2:1056951-1056970 None:intergenic 50.0%
ACGTGAAGCACGCCAAACAA+TGG + chr3.2:1058281-1058300 MS.gene53936:CDS 50.0%
ATCACCGGTACAGGTTATCC+TGG + chr3.2:1057626-1057645 MS.gene53936:intron 50.0%
ATTGTTTGGCGTGCTTCACG+TGG - chr3.2:1058282-1058301 None:intergenic 50.0%
CAAAGAGACATCACCGGTAC+AGG + chr3.2:1057617-1057636 MS.gene53936:intron 50.0%
CAGCACTAGGGAAGGTTGTA+AGG + chr3.2:1058170-1058189 MS.gene53936:CDS 50.0%
CTAAGCCATGAACAGGATGC+AGG - chr3.2:1056944-1056963 None:intergenic 50.0%
CTGCATCCTGTTCATGGCTT+AGG + chr3.2:1056942-1056961 MS.gene53936:intron 50.0%
CTTACAACCTTCCCTAGTGC+TGG - chr3.2:1058172-1058191 None:intergenic 50.0%
GTGACAGTGGAACCGAATGA+TGG + chr3.2:1057850-1057869 MS.gene53936:intron 50.0%
TAAACCAAGGGCCAGCACTA+GGG + chr3.2:1058158-1058177 MS.gene53936:CDS 50.0%
TCACCGGTACAGGTTATCCT+GGG + chr3.2:1057627-1057646 MS.gene53936:intron 50.0%
TCCTGTTCATGGCTTAGGTC+TGG + chr3.2:1056947-1056966 MS.gene53936:intron 50.0%
CACCGGTACAGGTTATCCTG+GGG + chr3.2:1057628-1057647 MS.gene53936:intron 55.0%
CTCCCCAGGATAACCTGTAC+CGG - chr3.2:1057633-1057652 None:intergenic 55.0%
CTGGCCCTTGGTTTACGAAC+TGG - chr3.2:1058153-1058172 None:intergenic 55.0%
GAAGGAAAAGGCGATGCAGG+TGG + chr3.2:1057494-1057513 MS.gene53936:intron 55.0%
GTAAACCAAGGGCCAGCACT+AGG + chr3.2:1058157-1058176 MS.gene53936:CDS 55.0%
TGCAGGTGGGAAAGAGCTTC+TGG + chr3.2:1057508-1057527 MS.gene53936:intron 55.0%
TGTGATGTCTTGTCGGCGCT+CGG + chr3.2:1058047-1058066 MS.gene53936:CDS 55.0%
!! AGTTGATGGAAGTGACGGGG+CGG + chr3.2:1056802-1056821 MS.gene53936:CDS 55.0%
AGGATTCTCGCCCGCAGGTT+TGG + chr3.2:1058081-1058100 MS.gene53936:CDS 60.0%
ATGGTAGGATTCTCGCCCGC+AGG + chr3.2:1058076-1058095 MS.gene53936:CDS 60.0%
GGCGCTCGGAAAGAGATGGT+AGG + chr3.2:1058061-1058080 MS.gene53936:CDS 60.0%
TGACGGGGCGGAAGTTTCTG+GGG + chr3.2:1056814-1056833 MS.gene53936:CDS 60.0%
TGTCGGCGCTCGGAAAGAGA+TGG + chr3.2:1058057-1058076 MS.gene53936:CDS 60.0%
! AGTGACGGGGCGGAAGTTTC+TGG + chr3.2:1056812-1056831 MS.gene53936:CDS 60.0%
! GTGACGGGGCGGAAGTTTCT+GGG + chr3.2:1056813-1056832 MS.gene53936:CDS 60.0%
CCAAGGGCCAGCACTAGGGA+AGG + chr3.2:1058162-1058181 MS.gene53936:CDS 65.0%
! GGGGCGGAAGTTTCTGGGGA+TGG + chr3.2:1056818-1056837 MS.gene53936:CDS 65.0%
!! CCTTCCCTAGTGCTGGCCCT+TGG - chr3.2:1058165-1058184 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 1056788 1058898 1056788 ID=MS.gene53936
chr3.2 mRNA 1056788 1058898 1056788 ID=MS.gene53936.t1;Parent=MS.gene53936
chr3.2 exon 1056788 1056848 1056788 ID=MS.gene53936.t1.exon1;Parent=MS.gene53936.t1
chr3.2 CDS 1056788 1056848 1056788 ID=cds.MS.gene53936.t1;Parent=MS.gene53936.t1
chr3.2 exon 1057857 1058302 1057857 ID=MS.gene53936.t1.exon2;Parent=MS.gene53936.t1
chr3.2 CDS 1057857 1058302 1057857 ID=cds.MS.gene53936.t1;Parent=MS.gene53936.t1
chr3.2 exon 1058698 1058898 1058698 ID=MS.gene53936.t1.exon3;Parent=MS.gene53936.t1
chr3.2 CDS 1058698 1058898 1058698 ID=cds.MS.gene53936.t1;Parent=MS.gene53936.t1
Gene Sequence

>MS.gene53936

ATGGAATCTAGATTAGTTGATGGAAGTGACGGGGCGGAAGTTTCTGGGGATGGTAATTTGGGTATGTATCGAGAAACATATGAAAGTTTGCAACTTGAATTGATTTTGAAATTCTCAATGATTAAAGCTAATGCATCTTTTTAAGTTTGAATTCCTGCATCCTGTTCATGGCTTAGGTCTGGTCTCTACATAATATAACTTTTGACAGAGAATGTTTCAACCTCAGTAATTTGCTTAAGCTACACTAAAAACATAGTTCCCACATTTTAGCTCAAAATTTGTTTACTTAACATGAAAGAAGTCTTAAGCGATGCTAAACACAGTGGAAAGTCGGAGTTACGATTTTTAATTTGTTGCATGCTACTTAGTTTCTCTGTTGTCTAGTTGTGTATATGTGGTTTATATTTTTACAAAACTTAATCCTACAATGTGTTGTAGCTATGTACCCTGGTGAATAACAAATTCTCTATGTCGTAAATAAGAACCAAAAATAGTATTTCCAACAGAGCATGCAAGACTCAAGACCAAACATTTCAACTTGGAATTTGGGACACTGAGAAAGATGAATGGAATTATGATGTTTTCCTATCATTTATATTCCAAAATGAATTAGTATTATGAGGGTGATTAGGACCCTTAATGAAATGAAAATTATGAAGGGGATTAGGATCCTGAATAGAATGAATTTTTTATTCGATAGTTGAATGAAGGAAAAGGCGATGCAGGTGGGAAAGAGCTTCTGGTTAAGGAATATCCCTCTTAGTAAACATCCTTTCAATACCTCATACAAGAACCACGACAAAAACGGTAAGAAACCAGTAGTCTGTCTCAAAGAGACATCACCGGTACAGGTTATCCTGGGGAGAAAAACCCTTTAGAGCCTCTAATAACTATAGGTTTCTTGATTTCTTTGCTTCTCTGCAGCTAAACAGCAGAATTCTTTGAATTTAAGTTCTTTCTCCATTTTTCATTTAAAGCAATCAACACAAACGTTATGTCATCATGCCATGCATAACTTATTTTTGCATGAAATTTTTTGATGTGTTCAAAAGATAAATTATTGTGACAGTGGAACCGAATGATGGGTGTAGATCGGAAAAGAGTTATTCTGGGAGAGAGTTGGGTATCTCTGATCATGACCGTATCTCTGATCATGACCATGCTGTTAAGGAACCATATGAAGGCATGGAATTTGTATCCGAAGATGCTGCTAAGATATTTTATGATGAATATGCCCGACATGTAGGATTTGTAATGCGTGTGATGTCTTGTCGGCGCTCGGAAAGAGATGGTAGGATTCTCGCCCGCAGGTTTGGATGTAATAAGGAGGGTCATTGTGTCAGCATACAAGGGAAACTTGGTCCAGTTCGTAAACCAAGGGCCAGCACTAGGGAAGGTTGTAAGGCGATGATTCATATCAAGTATGATCAGTCCGGAAAATGGGTGATAACAAAGTTTGTGAAAGATCATAATCATACACTAGTAGTCTCTCCACGTGAAGCACGCCAAACAATGGTAAATCCATAATTCTTATTTAACCGGTTTTCAATCTTTGGAAAACTTCTTACTAGTACTAATTTTTTCTCTTCATTTCCATATTTTTTAATTGATAAAACGTTATATTGTGCCCAGGCATGTATGGAAGAAAGAAGGAAACATTACATTAAATTAATTTCTTCATTTCTATATTTTTTTGGTTGATAAAACGTTGTATCGTGCCTTGGTAAGAAGAAGCTAATATTATTGTTTTTGGTTGTTCTATATAGCATGCCTGTTTTAACTCCTCTTTGTGAGGAAAGATTTGGTTGTTATTTTTACTATTATATTATATAACATCTCTGGTCTCTTAAAACAAAATGATGCTTTTGCTGACATTTTCATGATTGCTTTCTGCGTTGTTTTTGTTTTAGGATGAGAAGGATAAGAAAATTCAGGAACTAACAGTAGAGCTTCGGATTAAAAAACGGTTGTGTGTAACATATCAAGAACAGTTAACGTCTTTTATGAAAATTGTCGAAGAGCACAGTGACAAGCTGTCTGCAAGAATTCATCACATACTTGATAATCTTAAAGAATATGAATCCATAGAAGAGCTTTTGCACCAGACGTAG
Protein sequence

>MS.gene53936.t1

MESRLVDGSDGAEVSGDGNLVEPNDGCRSEKSYSGRELGISDHDRISDHDHAVKEPYEGMEFVSEDAAKIFYDEYARHVGFVMRVMSCRRSERDGRILARRFGCNKEGHCVSIQGKLGPVRKPRASTREGCKAMIHIKYDQSGKWVITKFVKDHNHTLVVSPREARQTMDEKDKKIQELTVELRIKKRLCVTYQEQLTSFMKIVEEHSDKLSARIHHILDNLKEYESIEELLHQT