AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54039

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54039.t1 MTR_1g006650 94.767 344 14 2 1 340 1 344 0.0 650
MS.gene54039.t1 MTR_3g109760 55.247 324 116 8 19 340 22 318 1.65e-104 309
MS.gene54039.t1 MTR_8g013950 46.884 337 131 12 23 340 35 342 5.79e-78 242
MS.gene54039.t1 MTR_8g076340 47.317 205 90 5 96 300 102 288 1.74e-46 159
MS.gene54039.t1 MTR_4g071590 34.615 312 141 10 5 299 15 280 6.74e-43 150
MS.gene54039.t1 MTR_4g471590 34.615 312 141 10 5 299 15 280 6.74e-43 150
MS.gene54039.t1 MTR_6g032830 39.732 224 101 6 107 296 35 258 6.77e-41 144
MS.gene54039.t1 MTR_5g021340 44.156 231 95 7 94 300 150 370 3.74e-39 143
MS.gene54039.t1 MTR_1g094930 35.463 313 142 11 27 294 9 306 1.46e-37 137
MS.gene54039.t1 MTR_3g117380 37.209 215 117 3 87 300 102 299 3.05e-37 136
MS.gene54039.t1 MTR_1g046680 78.873 71 15 0 229 299 171 241 9.79e-35 127
MS.gene54039.t1 MTR_7g085410 39.370 254 110 10 73 294 11 252 1.02e-34 128
MS.gene54039.t1 MTR_5g007600 74.648 71 18 0 229 299 258 328 4.68e-33 125
MS.gene54039.t1 MTR_5g007600 39.234 209 94 4 101 300 43 227 5.88e-29 114
MS.gene54039.t1 MTR_1g094930 78.462 65 14 0 230 294 147 211 1.10e-32 122
MS.gene54039.t1 MTR_1g116010 55.963 109 43 2 209 316 142 246 6.31e-32 120
MS.gene54039.t1 MTR_2g094600 76.923 65 15 0 230 294 216 280 1.75e-31 120
MS.gene54039.t1 MTR_4g058910 73.134 67 18 0 230 296 314 380 2.93e-30 119
MS.gene54039.t1 MTR_7g446110 62.903 62 23 0 230 291 187 248 3.65e-21 91.3
MS.gene54039.t1 MTR_7g445950 32.124 193 90 6 99 291 30 181 3.31e-19 84.3
MS.gene54039.t1 MTR_7g446070 33.495 206 105 8 88 291 18 193 6.44e-19 84.0
MS.gene54039.t1 MTR_7g445980 62.712 59 21 1 234 291 37 95 1.47e-18 80.1
MS.gene54039.t1 MTR_7g112330 70.588 34 10 0 232 265 24 57 2.80e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54039.t1 AT5G25830 56.981 265 97 7 93 340 67 331 6.29e-92 278
MS.gene54039.t1 AT4G32890 43.881 335 131 9 21 340 16 308 5.30e-80 246
MS.gene54039.t1 AT3G60530 48.309 207 63 6 93 298 63 226 3.63e-49 165
MS.gene54039.t1 AT2G45050 43.277 238 79 7 89 310 60 257 8.41e-49 165
MS.gene54039.t1 AT5G66320 38.519 270 116 8 69 312 86 331 3.61e-39 142
MS.gene54039.t1 AT5G66320 38.519 270 116 8 69 312 86 331 3.61e-39 142
MS.gene54039.t1 AT4G36240 37.544 285 106 9 22 297 10 231 6.03e-39 138
MS.gene54039.t1 AT4G34680 38.710 217 82 5 90 299 77 249 1.39e-36 133
MS.gene54039.t1 AT4G34680 38.710 217 82 5 90 299 77 249 1.39e-36 133
MS.gene54039.t1 AT3G51080 34.304 309 157 10 6 298 11 289 3.10e-34 128
MS.gene54039.t1 AT3G24050 74.286 70 18 0 229 298 193 262 2.58e-33 124
MS.gene54039.t1 AT1G08010 65.476 84 23 1 225 302 215 298 3.74e-33 125
MS.gene54039.t1 AT1G08010 65.476 84 23 1 225 302 215 298 3.74e-33 125
MS.gene54039.t1 AT1G08010 65.476 84 23 1 225 302 215 298 3.74e-33 125
MS.gene54039.t1 AT1G08000 70.833 72 21 0 225 296 213 284 3.52e-31 120
MS.gene54039.t1 AT1G08000 70.833 72 21 0 225 296 213 284 3.52e-31 120
MS.gene54039.t1 AT3G54810 62.963 81 30 0 230 310 229 309 6.24e-31 119
MS.gene54039.t1 AT3G54810 62.963 81 30 0 230 310 229 309 6.24e-31 119
MS.gene54039.t1 AT2G28340 69.841 63 19 0 232 294 193 255 1.32e-26 107
MS.gene54039.t1 AT3G45170 64.179 67 24 0 232 298 117 183 2.63e-26 104

Find 117 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTCACTGTCCTTTCTTCT+TGG 0.090798 1.1:+12443066 None:intergenic
CCAATATCAGGAACGACATT+AGG 0.287162 1.1:+12443933 None:intergenic
GCAGTCTTTGCCTGCTTCCT+TGG 0.291400 1.1:+12443090 None:intergenic
TACTCTGATGTTGTAAAATC+TGG 0.292416 1.1:+12442788 None:intergenic
TATATTCAACAAGGAAGTTT+TGG 0.298704 1.1:-12443256 MS.gene54039:CDS
CTAGCTGCAGGCCTGTATTC+AGG 0.333508 1.1:+12442910 None:intergenic
CTCCGGAGACCTGTGTGTTC+CGG 0.345236 1.1:-12443883 MS.gene54039:intron
CAAAAGATGCAACTGATATC+AGG 0.358334 1.1:-12443342 MS.gene54039:CDS
CCTAATGTCGTTCCTGATAT+TGG 0.361673 1.1:-12443933 MS.gene54039:CDS
AAAACTTCCTTGTTGAATAT+AGG 0.362486 1.1:+12443258 None:intergenic
GAAATAGGAGGATGCTTTAC+GGG 0.365602 1.1:-12443418 MS.gene54039:intron
CGACGTCATTGTTGAGGTTA+AGG 0.370723 1.1:+12444078 None:intergenic
TGTTGAATATAGGACTGTTT+CGG 0.382615 1.1:+12443268 None:intergenic
AAGACACCACAATGGCGAAC+CGG 0.386976 1.1:-12442997 MS.gene54039:CDS
ACGATGCGAGTTGGAGTGTT+TGG 0.387998 1.1:+12442870 None:intergenic
AAATTCTGACAGCCAATATC+AGG 0.389939 1.1:+12443921 None:intergenic
TGAAATAGGAGGATGCTTTA+CGG 0.392306 1.1:-12443419 MS.gene54039:intron
TTACTTGATTCACCAACATA+TGG 0.405233 1.1:-12442737 MS.gene54039:CDS
AGGACTGTTTCGGTTGGGTT+GGG 0.406165 1.1:+12443278 None:intergenic
GTTGGGTTGGGAAAGCTCAC+GGG 0.412320 1.1:+12443290 None:intergenic
CAATGGCGAACCGGGCCTAA+TGG 0.414512 1.1:-12442988 MS.gene54039:CDS
CACACAGGTCTCCGGAGAAA+TGG 0.416213 1.1:+12443889 None:intergenic
CACGGTAACGGTGGAGGAAG+AGG 0.434827 1.1:+12443995 None:intergenic
CAATATCAGGAACGACATTA+GGG 0.440367 1.1:+12443934 None:intergenic
CTCTTGCTACGGGCCTTAGC+TGG 0.442400 1.1:+12443231 None:intergenic
TGTCGGAGGAAAAGGTGGTT+TGG 0.443866 1.1:+12444135 None:intergenic
GGTTGGGTTGGGAAAGCTCA+CGG 0.448750 1.1:+12443289 None:intergenic
TACATCATCTGCCTAAAATC+AGG 0.450652 1.1:+12442712 None:intergenic
GCTCACGGGGTTCTTCGTCC+TGG 0.451765 1.1:+12443304 None:intergenic
AATATAGGACTGTTTCGGTT+GGG 0.459476 1.1:+12443273 None:intergenic
TAGGACTGTTTCGGTTGGGT+TGG 0.462649 1.1:+12443277 None:intergenic
AGTGTTGTTGTCGGAGGAAA+AGG 0.462952 1.1:+12444127 None:intergenic
AAGGACAGTGACGGAGGGTC+AGG 0.466229 1.1:-12443057 MS.gene54039:CDS
GAGGCAGAAGGAAATGTTGC+GGG 0.466463 1.1:-12442830 MS.gene54039:CDS
TACTTGATTCACCAACATAT+GGG 0.466490 1.1:-12442736 MS.gene54039:CDS
CAACATTGGAAAGCCATTCC+AGG 0.469957 1.1:+12443394 None:intergenic
GTCGATTGGTGCCTGAATAC+AGG 0.470023 1.1:-12442921 MS.gene54039:CDS
AGACACCACAATGGCGAACC+GGG 0.471491 1.1:-12442996 MS.gene54039:CDS
GCCCACGAGTCCTCTTGCTA+CGG 0.473059 1.1:+12443220 None:intergenic
GGAGGATGCTTTACGGGACC+TGG 0.481852 1.1:-12443412 MS.gene54039:CDS
GAATATAGGACTGTTTCGGT+TGG 0.481982 1.1:+12443272 None:intergenic
GTTAGCTCGTCATCATTGTC+CGG 0.486841 1.1:-12443963 MS.gene54039:CDS
ATGCTTTACGGGACCTGGAA+TGG 0.494601 1.1:-12443407 MS.gene54039:CDS
GACGTGAGCTCCAGTCGCAA+GGG 0.498267 1.1:+12443196 None:intergenic
AATCAAGTAATCATCATTGT+TGG 0.499207 1.1:+12442750 None:intergenic
TGTTTGGTCAGCACAAATGT+AGG 0.504596 1.1:+12442886 None:intergenic
ATCGTAAAGTGTTGGAGCTA+CGG 0.505579 1.1:-12442852 MS.gene54039:CDS
AAGGTTGGTGTCGGAAATGA+TGG 0.507635 1.1:+12444043 None:intergenic
ACAGTGATGGTAGGTAAGGC+GGG 0.516162 1.1:+12443114 None:intergenic
GGTGGTTTGGAAAATGTTGT+TGG 0.523159 1.1:+12444148 None:intergenic
TACCGACAATTTCATTGTTG+AGG 0.524862 1.1:-12444105 MS.gene54039:CDS
AAACGATTCCTCAACAACAT+TGG 0.525151 1.1:+12443380 None:intergenic
TACCGGAACACACAGGTCTC+CGG 0.525459 1.1:+12443881 None:intergenic
ATTGACCACGGTAACGGTGG+AGG 0.527850 1.1:+12443989 None:intergenic
GCCCGTAGCAAGAGGACTCG+TGG 0.533598 1.1:-12443222 MS.gene54039:CDS
AAGATACAAGTCGGGTCGAT+TGG 0.534399 1.1:-12442935 MS.gene54039:CDS
TTCCGACACCAACCTTGACT+CGG 0.534554 1.1:-12444036 MS.gene54039:CDS
AGGCATGAAGGTGCGAAACC+AGG 0.535516 1.1:-12443322 MS.gene54039:CDS
CCCACGAGTCCTCTTGCTAC+GGG 0.537511 1.1:+12443221 None:intergenic
GACGGAGGGTCAGGTGGAGA+TGG 0.539597 1.1:-12443048 MS.gene54039:CDS
GTTGTTGTCGGAGGAAAAGG+TGG 0.541025 1.1:+12444130 None:intergenic
GAGGGTCAGGTGGAGATGGT+CGG 0.544742 1.1:-12443044 MS.gene54039:CDS
CTGCTTCCTTGGAACAGTGA+TGG 0.548423 1.1:+12443101 None:intergenic
CAACACTTTACGATGCGAGT+TGG 0.550252 1.1:+12442861 None:intergenic
TGGAACAGTGATGGTAGGTA+AGG 0.550597 1.1:+12443110 None:intergenic
CATCACTGTTCCAAGGAAGC+AGG 0.554828 1.1:-12443100 MS.gene54039:CDS
AAAGACTGCTCCAAGAAGAA+AGG 0.555772 1.1:-12443076 MS.gene54039:CDS
AACGCTATTGACCACGGTAA+CGG 0.557909 1.1:+12443983 None:intergenic
GACAGTGACGGAGGGTCAGG+TGG 0.558691 1.1:-12443054 MS.gene54039:CDS
ACAAATGTAGGGCTAGCTGC+AGG 0.560737 1.1:+12442898 None:intergenic
AGACGTGAGCTCCAGTCGCA+AGG 0.560751 1.1:+12443195 None:intergenic
GTCCTCAACAATGAAATTGT+CGG 0.566137 1.1:+12444103 None:intergenic
AACAGTGATGGTAGGTAAGG+CGG 0.571647 1.1:+12443113 None:intergenic
TAAAATCAGGTCCCATATGT+TGG 0.573858 1.1:+12442725 None:intergenic
GTTTGGTCAGCACAAATGTA+GGG 0.574012 1.1:+12442887 None:intergenic
CCCGTAGCAAGAGGACTCGT+GGG 0.574146 1.1:-12443221 MS.gene54039:CDS
TTGGGTTGGGAAAGCTCACG+GGG 0.578980 1.1:+12443291 None:intergenic
CAGCTAAGGCCCGTAGCAAG+AGG 0.579929 1.1:-12443230 MS.gene54039:CDS
GGCCGAGTCAAGGTTGGTGT+CGG 0.584263 1.1:+12444034 None:intergenic
TTAGGCCCGGTTCGCCATTG+TGG 0.587065 1.1:+12442991 None:intergenic
TTAGCTCGTCATCATTGTCC+GGG 0.587117 1.1:-12443962 MS.gene54039:CDS
GCAACTGATATCAGGCATGA+AGG 0.589173 1.1:-12443334 MS.gene54039:CDS
TTGTGGTGTAAGATACAAGT+CGG 0.589234 1.1:-12442944 MS.gene54039:CDS
AGTTGACTGTGGCCGAGTCA+AGG 0.589310 1.1:+12444024 None:intergenic
ATTCCCTACGTAGGAATGGA+AGG 0.590186 1.1:-12444176 None:intergenic
ATTGTCGGTAGTGTTGTTGT+CGG 0.590207 1.1:+12444118 None:intergenic
GGTCAGGTGGAGATGGTCGG+AGG 0.590443 1.1:-12443041 MS.gene54039:CDS
GTCGGTAGTGTTGTTGTCGG+AGG 0.590547 1.1:+12444121 None:intergenic
TACCTACCATCACTGTTCCA+AGG 0.594004 1.1:-12443107 MS.gene54039:CDS
CGTCGTCGACGTCATTGTTG+AGG 0.596242 1.1:+12444072 None:intergenic
ATGGCTTTCCAATGTTGTTG+AGG 0.597478 1.1:-12443388 MS.gene54039:CDS
AACGACATTAGGGTCGCACC+CGG 0.603894 1.1:+12443944 None:intergenic
CAACTCGCATCGTAAAGTGT+TGG 0.604228 1.1:-12442860 MS.gene54039:CDS
CTCTTCCTCCACCGTTACCG+TGG 0.606184 1.1:-12443994 MS.gene54039:CDS
TGTGGTGTAAGATACAAGTC+GGG 0.608929 1.1:-12442943 MS.gene54039:CDS
GTTGGAGCTACGGAGGCAGA+AGG 0.611025 1.1:-12442842 MS.gene54039:CDS
CGTCATTGTTGAGGTTAAGG+AGG 0.612987 1.1:+12444081 None:intergenic
GACTGTGGCCGAGTCAAGGT+TGG 0.614521 1.1:+12444028 None:intergenic
ACGTGAGCTCCAGTCGCAAG+GGG 0.619626 1.1:+12443197 None:intergenic
GCTATTGACCACGGTAACGG+TGG 0.631846 1.1:+12443986 None:intergenic
GAAGAAAGGACAGTGACGGA+GGG 0.637953 1.1:-12443062 MS.gene54039:CDS
AAAACATTATGCAACGCTTG+TGG 0.638941 1.1:-12442961 MS.gene54039:CDS
CCAAGAAGAAAGGACAGTGA+CGG 0.640630 1.1:-12443066 MS.gene54039:CDS
AGAAGAAAGGACAGTGACGG+AGG 0.643844 1.1:-12443063 MS.gene54039:CDS
TTCCTTGGAACAGTGATGGT+AGG 0.661750 1.1:+12443105 None:intergenic
AGTGATGGTAGGTAAGGCGG+GGG 0.663791 1.1:+12443116 None:intergenic
GTAAAGTGTTGGAGCTACGG+AGG 0.667005 1.1:-12442849 MS.gene54039:CDS
CAGTGATGGTAGGTAAGGCG+GGG 0.673174 1.1:+12443115 None:intergenic
GGAGGCAGAAGGAAATGTTG+CGG 0.675658 1.1:-12442831 MS.gene54039:CDS
AGTTCTGACTCAGAAGAAGA+CGG 0.679246 1.1:+12443150 None:intergenic
GGTAACGGTGGAGGAAGAGG+CGG 0.684503 1.1:+12443998 None:intergenic
TATAATATACCGGAACACAC+AGG 0.691414 1.1:+12443874 None:intergenic
AAACAGTCCTATATTCAACA+AGG 0.707758 1.1:-12443265 MS.gene54039:CDS
CGAGCTAACGCTATTGACCA+CGG 0.719172 1.1:+12443977 None:intergenic
CGTGAGCTCCAGTCGCAAGG+GGG 0.723454 1.1:+12443198 None:intergenic
TGACAGACAAGACACCACAA+TGG 0.724676 1.1:-12443005 MS.gene54039:CDS
AGAGGCGGTTGAGTTGACTG+TGG 0.744548 1.1:+12444013 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATACACATATAATATAC+CGG + chr1.1:12443011-12443030 None:intergenic 20.0%
!!! TTTGTGTTGAAATTTGAAAT+AGG - chr1.1:12443439-12443458 MS.gene54039:intron 20.0%
!!! TTTTGTGATACTCAATAATT+TGG + chr1.1:12443310-12443329 None:intergenic 20.0%
! AAAACTTCCTTGTTGAATAT+AGG + chr1.1:12443617-12443636 None:intergenic 25.0%
! AATCAAGTAATCATCATTGT+TGG + chr1.1:12444125-12444144 None:intergenic 25.0%
! CTGAAATTATTGGCAAAAAA+GGG + chr1.1:12443192-12443211 None:intergenic 25.0%
!! TATATTCAACAAGGAAGTTT+TGG - chr1.1:12443616-12443635 MS.gene54039:intron 25.0%
!!! GTTTTTTCTCCTGAAATTAT+TGG + chr1.1:12443202-12443221 None:intergenic 25.0%
AAACAGTCCTATATTCAACA+AGG - chr1.1:12443607-12443626 MS.gene54039:intron 30.0%
CCTGAAATTATTGGCAAAAA+AGG + chr1.1:12443193-12443212 None:intergenic 30.0%
TACTCTGATGTTGTAAAATC+TGG + chr1.1:12444087-12444106 None:intergenic 30.0%
TACTTGATTCACCAACATAT+GGG - chr1.1:12444136-12444155 MS.gene54039:CDS 30.0%
TAGGCTAAATACAACAGAAT+GGG - chr1.1:12443229-12443248 MS.gene54039:CDS 30.0%
TGTTGAATATAGGACTGTTT+CGG + chr1.1:12443607-12443626 None:intergenic 30.0%
TTACTTGATTCACCAACATA+TGG - chr1.1:12444135-12444154 MS.gene54039:CDS 30.0%
! GCATGAGTTAGAAATTTTCA+TGG + chr1.1:12443127-12443146 None:intergenic 30.0%
! GTGTTGAAATTTGAAATAGG+AGG - chr1.1:12443442-12443461 MS.gene54039:intron 30.0%
! TGTTTCAAGAGCATATATAG+AGG - chr1.1:12443405-12443424 MS.gene54039:CDS 30.0%
!!! CCTTTTTTGCCAATAATTTC+AGG - chr1.1:12443190-12443209 MS.gene54039:CDS 30.0%
!!! GTTGTAAAATCTGGTTTTGT+TGG + chr1.1:12444078-12444097 None:intergenic 30.0%
AAAACATTATGCAACGCTTG+TGG - chr1.1:12443911-12443930 MS.gene54039:CDS 35.0%
AAACGATTCCTCAACAACAT+TGG + chr1.1:12443495-12443514 None:intergenic 35.0%
AAATTCTGACAGCCAATATC+AGG + chr1.1:12442954-12442973 None:intergenic 35.0%
AATATAGGACTGTTTCGGTT+GGG + chr1.1:12443602-12443621 None:intergenic 35.0%
AGGAGAAAAAACAACTAGCT+AGG - chr1.1:12443210-12443229 MS.gene54039:CDS 35.0%
AGGCTAAATACAACAGAATG+GGG - chr1.1:12443230-12443249 MS.gene54039:CDS 35.0%
CAAAAGATGCAACTGATATC+AGG - chr1.1:12443530-12443549 MS.gene54039:intron 35.0%
CAATATCAGGAACGACATTA+GGG + chr1.1:12442941-12442960 None:intergenic 35.0%
CTAGGCTAAATACAACAGAA+TGG - chr1.1:12443228-12443247 MS.gene54039:CDS 35.0%
GTCCTCAACAATGAAATTGT+CGG + chr1.1:12442772-12442791 None:intergenic 35.0%
TAAAATCAGGTCCCATATGT+TGG + chr1.1:12444150-12444169 None:intergenic 35.0%
TACATCATCTGCCTAAAATC+AGG + chr1.1:12444163-12444182 None:intergenic 35.0%
TACCGACAATTTCATTGTTG+AGG - chr1.1:12442767-12442786 MS.gene54039:CDS 35.0%
TATAATATACCGGAACACAC+AGG + chr1.1:12443001-12443020 None:intergenic 35.0%
TGAAATAGGAGGATGCTTTA+CGG - chr1.1:12443453-12443472 MS.gene54039:intron 35.0%
TTGTGGTGTAAGATACAAGT+CGG - chr1.1:12443928-12443947 MS.gene54039:CDS 35.0%
! AACATATGGGACCTGATTTT+AGG - chr1.1:12444149-12444168 MS.gene54039:CDS 35.0%
!! AAGCGTTGCATAATGTTTTC+GGG + chr1.1:12443910-12443929 None:intergenic 35.0%
!! CAAGCGTTGCATAATGTTTT+CGG + chr1.1:12443911-12443930 None:intergenic 35.0%
!!! AAATCTGGTTTTGTTGGTGT+TGG + chr1.1:12444072-12444091 None:intergenic 35.0%
AAAGACTGCTCCAAGAAGAA+AGG - chr1.1:12443796-12443815 MS.gene54039:intron 40.0%
ATGGCTTTCCAATGTTGTTG+AGG - chr1.1:12443484-12443503 MS.gene54039:intron 40.0%
CCAATATCAGGAACGACATT+AGG + chr1.1:12442942-12442961 None:intergenic 40.0%
CCTAATGTCGTTCCTGATAT+TGG - chr1.1:12442939-12442958 MS.gene54039:CDS 40.0%
GAAATAGGAGGATGCTTTAC+GGG - chr1.1:12443454-12443473 MS.gene54039:intron 40.0%
GAATATAGGACTGTTTCGGT+TGG + chr1.1:12443603-12443622 None:intergenic 40.0%
GTTTGGTCAGCACAAATGTA+GGG + chr1.1:12443988-12444007 None:intergenic 40.0%
TGTGGTGTAAGATACAAGTC+GGG - chr1.1:12443929-12443948 MS.gene54039:CDS 40.0%
TGTTTGGTCAGCACAAATGT+AGG + chr1.1:12443989-12444008 None:intergenic 40.0%
! AGTTCTGACTCAGAAGAAGA+CGG + chr1.1:12443725-12443744 None:intergenic 40.0%
! ATTGTCGGTAGTGTTGTTGT+CGG + chr1.1:12442757-12442776 None:intergenic 40.0%
! GGTGGTTTGGAAAATGTTGT+TGG + chr1.1:12442727-12442746 None:intergenic 40.0%
! TTTTCTGACAGCCATTTCTC+CGG - chr1.1:12442972-12442991 MS.gene54039:CDS 40.0%
!! ATCGTAAAGTGTTGGAGCTA+CGG - chr1.1:12444020-12444039 MS.gene54039:CDS 40.0%
!! CATAATGTTTTCGGGCCATT+AGG + chr1.1:12443902-12443921 None:intergenic 40.0%
AACAGTGATGGTAGGTAAGG+CGG + chr1.1:12443762-12443781 None:intergenic 45.0%
AACGCTATTGACCACGGTAA+CGG + chr1.1:12442892-12442911 None:intergenic 45.0%
AAGATACAAGTCGGGTCGAT+TGG - chr1.1:12443937-12443956 MS.gene54039:CDS 45.0%
ACAGAATGGGGCACATTTCA+CGG - chr1.1:12443242-12443261 MS.gene54039:CDS 45.0%
CAACACTTTACGATGCGAGT+TGG + chr1.1:12444014-12444033 None:intergenic 45.0%
CAACATTGGAAAGCCATTCC+AGG + chr1.1:12443481-12443500 None:intergenic 45.0%
CAACTCGCATCGTAAAGTGT+TGG - chr1.1:12444012-12444031 MS.gene54039:CDS 45.0%
CCAAGAAGAAAGGACAGTGA+CGG - chr1.1:12443806-12443825 MS.gene54039:intron 45.0%
CGACGTCATTGTTGAGGTTA+AGG + chr1.1:12442797-12442816 None:intergenic 45.0%
CGTCATTGTTGAGGTTAAGG+AGG + chr1.1:12442794-12442813 None:intergenic 45.0%
GCAACTGATATCAGGCATGA+AGG - chr1.1:12443538-12443557 MS.gene54039:intron 45.0%
GTTAGCTCGTCATCATTGTC+CGG - chr1.1:12442909-12442928 MS.gene54039:CDS 45.0%
TACCTACCATCACTGTTCCA+AGG - chr1.1:12443765-12443784 MS.gene54039:intron 45.0%
TGACAGACAAGACACCACAA+TGG - chr1.1:12443867-12443886 MS.gene54039:intron 45.0%
TGGAACAGTGATGGTAGGTA+AGG + chr1.1:12443765-12443784 None:intergenic 45.0%
TTAGCTCGTCATCATTGTCC+GGG - chr1.1:12442910-12442929 MS.gene54039:CDS 45.0%
TTCCTTGGAACAGTGATGGT+AGG + chr1.1:12443770-12443789 None:intergenic 45.0%
! AGTGTTGTTGTCGGAGGAAA+AGG + chr1.1:12442748-12442767 None:intergenic 45.0%
!! AAGGTTGGTGTCGGAAATGA+TGG + chr1.1:12442832-12442851 None:intergenic 45.0%
!! TGAGGAATCGTTTTCAAGCG+AGG - chr1.1:12443502-12443521 MS.gene54039:intron 45.0%
!!! GGAAGTTTTGGTTCCAGCTA+AGG - chr1.1:12443628-12443647 MS.gene54039:intron 45.0%
AAGACACCACAATGGCGAAC+CGG - chr1.1:12443875-12443894 MS.gene54039:intron 50.0%
ACAGTGATGGTAGGTAAGGC+GGG + chr1.1:12443761-12443780 None:intergenic 50.0%
AGAAGAAAGGACAGTGACGG+AGG - chr1.1:12443809-12443828 MS.gene54039:intron 50.0%
AGGACTGTTTCGGTTGGGTT+GGG + chr1.1:12443597-12443616 None:intergenic 50.0%
ATGCTTTACGGGACCTGGAA+TGG - chr1.1:12443465-12443484 MS.gene54039:intron 50.0%
CATCACTGTTCCAAGGAAGC+AGG - chr1.1:12443772-12443791 MS.gene54039:intron 50.0%
CCGTCACTGTCCTTTCTTCT+TGG + chr1.1:12443809-12443828 None:intergenic 50.0%
CGAGCTAACGCTATTGACCA+CGG + chr1.1:12442898-12442917 None:intergenic 50.0%
CTGCTTCCTTGGAACAGTGA+TGG + chr1.1:12443774-12443793 None:intergenic 50.0%
GAGGCAGAAGGAAATGTTGC+GGG - chr1.1:12444042-12444061 MS.gene54039:CDS 50.0%
GGAGGCAGAAGGAAATGTTG+CGG - chr1.1:12444041-12444060 MS.gene54039:CDS 50.0%
GTTGTTGTCGGAGGAAAAGG+TGG + chr1.1:12442745-12442764 None:intergenic 50.0%
TAGGACTGTTTCGGTTGGGT+TGG + chr1.1:12443598-12443617 None:intergenic 50.0%
TGTCGGAGGAAAAGGTGGTT+TGG + chr1.1:12442740-12442759 None:intergenic 50.0%
TTCCGACACCAACCTTGACT+CGG - chr1.1:12442836-12442855 MS.gene54039:CDS 50.0%
! ACGATGCGAGTTGGAGTGTT+TGG + chr1.1:12444005-12444024 None:intergenic 50.0%
! GAAGAAAGGACAGTGACGGA+GGG - chr1.1:12443810-12443829 MS.gene54039:intron 50.0%
! GTCGATTGGTGCCTGAATAC+AGG - chr1.1:12443951-12443970 MS.gene54039:CDS 50.0%
!! ACAAATGTAGGGCTAGCTGC+AGG + chr1.1:12443977-12443996 None:intergenic 50.0%
!! GTAAAGTGTTGGAGCTACGG+AGG - chr1.1:12444023-12444042 MS.gene54039:CDS 50.0%
AACGACATTAGGGTCGCACC+CGG + chr1.1:12442931-12442950 None:intergenic 55.0%
AGACACCACAATGGCGAACC+GGG - chr1.1:12443876-12443895 MS.gene54039:intron 55.0%
AGTGATGGTAGGTAAGGCGG+GGG + chr1.1:12443759-12443778 None:intergenic 55.0%
AGTTGACTGTGGCCGAGTCA+AGG + chr1.1:12442851-12442870 None:intergenic 55.0%
CACACAGGTCTCCGGAGAAA+TGG + chr1.1:12442986-12443005 None:intergenic 55.0%
CAGTGATGGTAGGTAAGGCG+GGG + chr1.1:12443760-12443779 None:intergenic 55.0%
CGTCGTCGACGTCATTGTTG+AGG + chr1.1:12442803-12442822 None:intergenic 55.0%
CTAGCTGCAGGCCTGTATTC+AGG + chr1.1:12443965-12443984 None:intergenic 55.0%
GCAGTCTTTGCCTGCTTCCT+TGG + chr1.1:12443785-12443804 None:intergenic 55.0%
TACCGGAACACACAGGTCTC+CGG + chr1.1:12442994-12443013 None:intergenic 55.0%
! AGGCATGAAGGTGCGAAACC+AGG - chr1.1:12443550-12443569 MS.gene54039:intron 55.0%
! ATTGACCACGGTAACGGTGG+AGG + chr1.1:12442886-12442905 None:intergenic 55.0%
! GCTATTGACCACGGTAACGG+TGG + chr1.1:12442889-12442908 None:intergenic 55.0%
! GTCGGTAGTGTTGTTGTCGG+AGG + chr1.1:12442754-12442773 None:intergenic 55.0%
!! AGAGGCGGTTGAGTTGACTG+TGG + chr1.1:12442862-12442881 None:intergenic 55.0%
!! GGTTGGGTTGGGAAAGCTCA+CGG + chr1.1:12443586-12443605 None:intergenic 55.0%
!! GTTGGGTTGGGAAAGCTCAC+GGG + chr1.1:12443585-12443604 None:intergenic 55.0%
!! TGTTTTCGGGCCATTAGGCC+CGG + chr1.1:12443897-12443916 None:intergenic 55.0%
!! TTGGGTTGGGAAAGCTCACG+GGG + chr1.1:12443584-12443603 None:intergenic 55.0%
ACGTGAGCTCCAGTCGCAAG+GGG + chr1.1:12443678-12443697 None:intergenic 60.0%
AGACGTGAGCTCCAGTCGCA+AGG + chr1.1:12443680-12443699 None:intergenic 60.0%
ATGGTAGGTAAGGCGGGGGT+AGG + chr1.1:12443755-12443774 None:intergenic 60.0%
CAATGGCGAACCGGGCCTAA+TGG - chr1.1:12443884-12443903 MS.gene54039:CDS 60.0%
CAGCTAAGGCCCGTAGCAAG+AGG - chr1.1:12443642-12443661 MS.gene54039:intron 60.0%
CCCACGAGTCCTCTTGCTAC+GGG + chr1.1:12443654-12443673 None:intergenic 60.0%
CCCGTAGCAAGAGGACTCGT+GGG - chr1.1:12443651-12443670 MS.gene54039:intron 60.0%
CTCCGGAGACCTGTGTGTTC+CGG - chr1.1:12442989-12443008 MS.gene54039:CDS 60.0%
CTCTTCCTCCACCGTTACCG+TGG - chr1.1:12442878-12442897 MS.gene54039:CDS 60.0%
CTCTTGCTACGGGCCTTAGC+TGG + chr1.1:12443644-12443663 None:intergenic 60.0%
GACGTGAGCTCCAGTCGCAA+GGG + chr1.1:12443679-12443698 None:intergenic 60.0%
GACTGTGGCCGAGTCAAGGT+TGG + chr1.1:12442847-12442866 None:intergenic 60.0%
GAGGGTCAGGTGGAGATGGT+CGG - chr1.1:12443828-12443847 MS.gene54039:intron 60.0%
GCCCACGAGTCCTCTTGCTA+CGG + chr1.1:12443655-12443674 None:intergenic 60.0%
GGAGGATGCTTTACGGGACC+TGG - chr1.1:12443460-12443479 MS.gene54039:intron 60.0%
GTTGGAGCTACGGAGGCAGA+AGG - chr1.1:12444030-12444049 MS.gene54039:CDS 60.0%
! AAGGACAGTGACGGAGGGTC+AGG - chr1.1:12443815-12443834 MS.gene54039:intron 60.0%
! CACGGTAACGGTGGAGGAAG+AGG + chr1.1:12442880-12442899 None:intergenic 60.0%
! GGTAACGGTGGAGGAAGAGG+CGG + chr1.1:12442877-12442896 None:intergenic 60.0%
! TTAGGCCCGGTTCGCCATTG+TGG + chr1.1:12443884-12443903 None:intergenic 60.0%
!! GGCCGAGTCAAGGTTGGTGT+CGG + chr1.1:12442841-12442860 None:intergenic 60.0%
CGTGAGCTCCAGTCGCAAGG+GGG + chr1.1:12443677-12443696 None:intergenic 65.0%
GACGGAGGGTCAGGTGGAGA+TGG - chr1.1:12443824-12443843 MS.gene54039:intron 65.0%
GCCCGTAGCAAGAGGACTCG+TGG - chr1.1:12443650-12443669 MS.gene54039:intron 65.0%
GCTCACGGGGTTCTTCGTCC+TGG + chr1.1:12443571-12443590 None:intergenic 65.0%
GGTCAGGTGGAGATGGTCGG+AGG - chr1.1:12443831-12443850 MS.gene54039:intron 65.0%
! GACAGTGACGGAGGGTCAGG+TGG - chr1.1:12443818-12443837 MS.gene54039:intron 65.0%
CTCGTGGGCCCCCTTGCGAC+TGG - chr1.1:12443666-12443685 MS.gene54039:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 12442711 12444183 12442711 ID=MS.gene54039
chr1.1 mRNA 12442711 12444183 12442711 ID=MS.gene54039.t1;Parent=MS.gene54039
chr1.1 exon 12443884 12444183 12443884 ID=MS.gene54039.t1.exon1;Parent=MS.gene54039.t1
chr1.1 CDS 12443884 12444183 12443884 ID=cds.MS.gene54039.t1;Parent=MS.gene54039.t1
chr1.1 exon 12442711 12443433 12442711 ID=MS.gene54039.t1.exon2;Parent=MS.gene54039.t1
chr1.1 CDS 12442711 12443433 12442711 ID=cds.MS.gene54039.t1;Parent=MS.gene54039.t1
Gene Sequence

>MS.gene54039

ATGGAAGGCACGACCAACAACATTTTCCAAACCACCTTTTCCTCCGACAACAACACTACCGACAATTTCATTGTTGAGGACCTCCTTAACCTCAACAATGACGTCGACGACGACGCTACCATCATTTCCGACACCAACCTTGACTCGGCCACAGTCAACTCAACCGCCTCTTCCTCCACCGTTACCGTGGTCAATAGCGTTAGCTCGTCATCATTGTCCGGGTGCGACCCTAATGTCGTTCCTGATATTGGCTGTCAGAATTTTTCTGACAGCCATTTCTCCGGAGACCTGTGTGTTCCGGTATATTATATGTGTATATGCATTATCAATTATTATCTTTTTAAAAAAATATAAAAAGCACATAGACACTTCACAATTTTCTAACTCGTTTAATTTGACTTTTTCTATTAGTTCCATGAAAATTTCTAACTCATGCACGTATAACATATAACATCACATTGCATTTGAAGATTTTGAACCCTTTTTTGCCAATAATTTCAGGAGAAAAAACAACTAGCTAGGCTAAATACAACAGAATGGGGCACATTTCACGGTTCGAAAACTAAATTTTATTGCAACATTTGTTTCAATTATTACCAAATTATTGAGTATCACAAAAATAGTACACGTGAAAGCATTAGTATGACTATGAACAAAAAATGTGTATGATTGATTACTTGTGTACAATGTAATATGTTTCAAGAGCATATATAGAGGAATAATTATTGTTTGTGTTGAAATTTGAAATAGGAGGATGCTTTACGGGACCTGGAATGGCTTTCCAATGTTGTTGAGGAATCGTTTTCAAGCGAGGATCTTCAAAAGATGCAACTGATATCAGGCATGAAGGTGCGAAACCAGGACGAAGAACCCCGTGAGCTTTCCCAACCCAACCGAAACAGTCCTATATTCAACAAGGAAGTTTTGGTTCCAGCTAAGGCCCGTAGCAAGAGGACTCGTGGGCCCCCTTGCGACTGGAGCTCACGTCTTCTTGTTTTGTCTCAAACAACACCGTCTTCTTCTGAGTCAGAACTTCTTATTCCTACCCCCGCCTTACCTACCATCACTGTTCCAAGGAAGCAGGCAAAGACTGCTCCAAGAAGAAAGGACAGTGACGGAGGGTCAGGTGGAGATGGTCGGAGGTGTCTGCATTGCATGACAGACAAGACACCACAATGGCGAACCGGGCCTAATGGCCCGAAAACATTATGCAACGCTTGTGGTGTAAGATACAAGTCGGGTCGATTGGTGCCTGAATACAGGCCTGCAGCTAGCCCTACATTTGTGCTGACCAAACACTCCAACTCGCATCGTAAAGTGTTGGAGCTACGGAGGCAGAAGGAAATGTTGCGGGCACACCAACACCAACAAAACCAGATTTTACAACATCAGAGTATGATGTTTGATATGTCCAACAATGATGATTACTTGATTCACCAACATATGGGACCTGATTTTAGGCAGATGATGTAG
Protein sequence

>MS.gene54039.t1

MEGTTNNIFQTTFSSDNNTTDNFIVEDLLNLNNDVDDDATIISDTNLDSATVNSTASSSTVTVVNSVSSSSLSGCDPNVVPDIGCQNFSDSHFSGDLCVPEDALRDLEWLSNVVEESFSSEDLQKMQLISGMKVRNQDEEPRELSQPNRNSPIFNKEVLVPAKARSKRTRGPPCDWSSRLLVLSQTTPSSSESELLIPTPALPTITVPRKQAKTAPRRKDSDGGSGGDGRRCLHCMTDKTPQWRTGPNGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAHQHQQNQILQHQSMMFDMSNNDDYLIHQHMGPDFRQMM