AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54107

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54107.t1 MTR_0036s0260 86.765 68 9 0 158 225 28 95 2.70e-36 128
MS.gene54107.t1 MTR_4g107230 80.612 98 5 1 158 255 84 167 2.39e-35 128
MS.gene54107.t1 MTR_2g090305 83.824 68 11 0 158 225 28 95 6.39e-34 121
MS.gene54107.t1 MTR_6g092540 78.462 65 14 0 158 222 97 161 2.71e-32 120
MS.gene54107.t1 MTR_4g100630 56.701 97 34 1 158 254 95 183 3.24e-32 120
MS.gene54107.t1 MTR_2g100930 73.529 68 18 0 158 225 109 176 5.88e-32 120
MS.gene54107.t1 MTR_5g037080 86.957 69 9 0 158 226 102 170 2.08e-30 115
MS.gene54107.t1 MTR_8g101650 73.846 65 16 1 158 222 105 168 2.87e-29 112
MS.gene54107.t1 MTR_4g111975 71.642 67 19 0 158 224 138 204 4.19e-29 112
MS.gene54107.t1 MTR_1g111830 69.697 66 20 0 159 224 125 190 2.82e-27 105
MS.gene54107.t1 MTR_3g462790 68.657 67 21 0 158 224 147 213 8.18e-27 106
MS.gene54107.t1 MTR_5g069710 68.657 67 21 0 158 224 132 198 1.02e-26 105
MS.gene54107.t1 MTR_7g067080 68.182 66 21 0 158 223 140 205 1.32e-25 102
MS.gene54107.t1 MTR_3g104370 56.790 81 31 2 146 222 78 158 7.40e-24 96.3
MS.gene54107.t1 MTR_5g081860 52.174 92 42 1 158 247 125 216 8.25e-24 97.1
MS.gene54107.t1 MTR_8g063600 46.154 104 54 1 122 223 70 173 1.10e-20 89.0
MS.gene54107.t1 MTR_1g048660 54.688 64 29 0 159 222 13 76 7.27e-19 79.3
MS.gene54107.t1 MTR_1g033620 69.231 52 16 0 173 224 20 71 2.01e-18 82.0
MS.gene54107.t1 MTR_4g015130 62.500 56 21 0 168 223 3 58 2.37e-18 77.8
MS.gene54107.t1 MTR_5g027570 50.000 70 33 1 156 223 90 159 3.44e-18 81.3
MS.gene54107.t1 MTR_8g063870 57.576 66 26 1 160 223 94 159 4.00e-18 81.6
MS.gene54107.t1 MTR_5g088010 42.268 97 47 2 158 245 60 156 1.33e-17 80.1
MS.gene54107.t1 MTR_5g088060 42.268 97 47 2 160 247 274 370 7.03e-17 80.1
MS.gene54107.t1 MTR_5g488160 42.268 97 47 2 160 247 274 370 7.03e-17 80.1
MS.gene54107.t1 MTR_5g027550 41.935 93 51 1 138 227 57 149 9.36e-16 74.3
MS.gene54107.t1 MTR_1g083180 49.296 71 32 2 160 227 63 132 9.19e-14 68.2
MS.gene54107.t1 MTR_5g075760 43.210 81 43 2 160 238 107 186 3.62e-12 64.3
MS.gene54107.t1 MTR_3g070110 47.222 72 31 1 160 224 97 168 6.29e-12 63.5
MS.gene54107.t1 MTR_5g075790 41.975 81 44 2 160 238 115 194 1.65e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54107.t1 AT5G47390 69.231 78 24 0 148 225 86 163 8.91e-33 123
MS.gene54107.t1 AT1G49010 73.134 67 18 0 158 224 134 200 1.29e-29 113
MS.gene54107.t1 AT1G70000 84.058 69 11 0 158 226 98 166 1.54e-28 109
MS.gene54107.t1 AT1G70000 84.058 69 11 0 158 226 98 166 1.54e-28 109
MS.gene54107.t1 AT5G56840 67.647 68 21 1 158 224 91 158 7.57e-28 107
MS.gene54107.t1 AT5G08520 68.657 67 21 0 158 224 118 184 8.19e-28 108
MS.gene54107.t1 AT5G58900 64.474 76 27 0 149 224 132 207 1.10e-27 107
MS.gene54107.t1 AT5G04760 69.697 66 20 0 159 224 100 165 1.38e-27 105
MS.gene54107.t1 AT2G38090 68.657 67 21 0 158 224 141 207 4.14e-27 106
MS.gene54107.t1 AT5G61620 56.322 87 37 1 137 223 88 173 1.82e-26 105
MS.gene54107.t1 AT1G74840 77.215 79 18 0 148 226 86 164 3.18e-26 102
MS.gene54107.t1 AT3G16350 56.000 100 32 1 158 257 137 224 5.14e-26 105
MS.gene54107.t1 AT1G74840 77.215 79 18 0 148 226 86 164 5.40e-26 102
MS.gene54107.t1 AT1G19000 84.058 69 11 0 158 226 102 170 2.55e-25 101
MS.gene54107.t1 AT1G19000 84.058 69 11 0 158 226 102 170 2.55e-25 101
MS.gene54107.t1 AT5G01200 64.179 67 24 0 158 224 146 212 2.39e-24 98.6
MS.gene54107.t1 AT3G11280 62.687 67 25 0 158 224 127 193 4.46e-23 95.1
MS.gene54107.t1 AT3G11280 62.687 67 25 0 158 224 127 193 4.46e-23 95.1
MS.gene54107.t1 AT5G05790 62.687 67 25 0 158 224 131 197 5.49e-23 95.1
MS.gene54107.t1 AT5G05790 62.687 67 25 0 158 224 131 197 5.49e-23 95.1
MS.gene54107.t1 AT3G10580 57.576 66 26 1 158 223 95 158 1.60e-19 85.5
MS.gene54107.t1 AT3G10580 57.576 66 26 1 158 223 95 158 2.62e-19 85.5
MS.gene54107.t1 AT4G09450 57.576 66 28 0 158 223 91 156 3.05e-19 83.6
MS.gene54107.t1 AT5G23650 57.576 66 28 0 158 223 120 185 3.85e-18 82.8
MS.gene54107.t1 AT3G10590 51.471 68 32 1 159 226 112 178 9.68e-17 76.6

Find 62 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTGGAATTCGGCGAAAT+TGG 0.267088 1.2:+9816669 MS.gene54107:CDS
ATCCAATCCTCGACTCAATT+CGG 0.383316 1.2:+9815255 MS.gene54107:CDS
ATTGGATTCGTATTCGTATT+CGG 0.388597 1.2:-9815239 None:intergenic
ATGATACGTTCGGCTTGATT+CGG 0.399842 1.2:-9816395 None:intergenic
TTGACCTGTTCTGCCTCCAC+TGG 0.404876 1.2:-9820875 None:intergenic
TCCATACCAACACAACTTGC+GGG 0.407989 1.2:-9820563 None:intergenic
GCAGGATGAAGGAGAGAGAA+GGG 0.410575 1.2:+9815437 MS.gene54107:intron
AATTCCAGTGGAGGCAGAAC+AGG 0.422715 1.2:+9820871 MS.gene54107:CDS
AAAACTTGAAGAGGCTGATT+CGG 0.426075 1.2:-9816427 None:intergenic
GAGAGAAGGGTAGGGCAAGA+AGG 0.440573 1.2:+9815450 MS.gene54107:CDS
TACCGAATTGAGTCGAGGAT+TGG 0.448746 1.2:-9815257 None:intergenic
GAAGAAGTAGAGAGTGAAGG+TGG 0.461434 1.2:+9815495 MS.gene54107:CDS
TTGGTTGGATTGGAGAAAGT+GGG 0.463944 1.2:+9819255 MS.gene54107:CDS
AGAAAGTGGGAAAAGGTGAT+TGG 0.482958 1.2:+9819268 MS.gene54107:CDS
AGTAGAGAGTGAAGGTGGGA+GGG 0.486297 1.2:+9815500 MS.gene54107:CDS
TTTGGTTGGATTGGAGAAAG+TGG 0.487039 1.2:+9819254 MS.gene54107:CDS
TTTATGGTATTGCAGGATGA+AGG 0.497513 1.2:+9815426 MS.gene54107:intron
TAATCTATTCAGAGATCAAT+CGG 0.497849 1.2:+9815195 MS.gene54107:CDS
AGAGAGTGAAGGTGGGAGGG+AGG 0.510342 1.2:+9815503 MS.gene54107:CDS
AAGTAGAGAGTGAAGGTGGG+AGG 0.516702 1.2:+9815499 MS.gene54107:CDS
TTCGGCTTGATTCGGAGTCT+CGG 0.518270 1.2:-9816387 None:intergenic
TGCAGGATGAAGGAGAGAGA+AGG 0.521958 1.2:+9815436 MS.gene54107:intron
AAGAAGTAGAGAGTGAAGGT+GGG 0.527706 1.2:+9815496 MS.gene54107:CDS
GATGAAGGAGAGAGAAGGGT+AGG 0.529746 1.2:+9815441 MS.gene54107:CDS
GATGTCGGCGATGATACGTT+CGG 0.535062 1.2:-9816405 None:intergenic
GGTGGTGATATCAAAGAGAC+TGG 0.540239 1.2:-9819400 None:intergenic
CATGTAGCAGCTCGCCGTGA+TGG 0.540577 1.2:+9815834 MS.gene54107:intron
TGAAACAACACGGTCGCGGA+AGG 0.547487 1.2:+9816635 MS.gene54107:CDS
GTCCATACCAACACAACTTG+CGG 0.547945 1.2:-9820564 None:intergenic
AGTGGCTCGAATCTTAATCA+AGG 0.550078 1.2:+9815880 MS.gene54107:CDS
TCTTTGACGAAAACTTGAAG+AGG 0.550619 1.2:-9816436 None:intergenic
AACAGGTCAAGAATCAAGAT+AGG 0.553293 1.2:+9820888 MS.gene54107:CDS
GAAGAGGCTGATTCGGATGT+CGG 0.556652 1.2:-9816420 None:intergenic
GGATTGGAGAAAGTGGGAAA+AGG 0.562648 1.2:+9819261 MS.gene54107:CDS
ATTCAGAGATCAATCGGAAG+AGG 0.569947 1.2:+9815201 MS.gene54107:CDS
GAAGAAGAAGTAGAGAGTGA+AGG 0.574931 1.2:+9815492 MS.gene54107:CDS
TAACAGCCCGCAAGTTGTGT+TGG 0.575294 1.2:+9820557 MS.gene54107:CDS
AACGCATACTGAGGGATCGA+AGG 0.576712 1.2:-9816489 None:intergenic
ATGAAGGAGAGAGAAGGGTA+GGG 0.580265 1.2:+9815442 MS.gene54107:CDS
AGGGTAGGGCAAGAAGGTGA+AGG 0.585834 1.2:+9815456 MS.gene54107:CDS
TATCAAAGAGACTGGATCTA+CGG 0.592657 1.2:-9819392 None:intergenic
TTGTGCTCTTCCTCAGTCCA+CGG 0.594809 1.2:-9819225 None:intergenic
GCGGTGGTAATTGCATGTAG+TGG 0.599523 1.2:+9815862 MS.gene54107:CDS
GTCCTGAAAATGATGTTGCA+TGG 0.600631 1.2:-9816467 None:intergenic
TTAGTGAAACAACACGGTCG+CGG 0.604473 1.2:+9816631 MS.gene54107:CDS
GGGCAAGAAGGTGAAGGACA+AGG 0.613410 1.2:+9815462 MS.gene54107:CDS
GTGATTGGAGAGGAATCTCA+AGG 0.619264 1.2:+9819283 MS.gene54107:CDS
GTGGGAAAAGGTGATTGGAG+AGG 0.624127 1.2:+9819273 MS.gene54107:CDS
TGAATGGATCAGGGATTCCG+TGG 0.626840 1.2:+9819208 MS.gene54107:intron
GTGGCTCGAATCTTAATCAA+GGG 0.626980 1.2:+9815881 MS.gene54107:CDS
GGCGATTGAGATTACTTCGG+CGG 0.629813 1.2:-9819365 None:intergenic
TTCGTTCATTGACAGAAACA+GGG 0.636822 1.2:+9816355 MS.gene54107:intron
GCATGACTTGCAACATGCGT+AGG 0.636946 1.2:-9819327 None:intergenic
CTTTGATATCACCACCGACA+CGG 0.638033 1.2:+9819407 MS.gene54107:CDS
GACGGCGATTGAGATTACTT+CGG 0.641222 1.2:-9819368 None:intergenic
TTAGGTATCTGCAATTCCAG+TGG 0.643696 1.2:+9820859 MS.gene54107:intron
GGTATCTGCAATTCCAGTGG+AGG 0.652641 1.2:+9820862 MS.gene54107:intron
AATCTTACCGAATTGAGTCG+AGG 0.654505 1.2:-9815262 None:intergenic
ATCAGGGATTCCGTGGACTG+AGG 0.660333 1.2:+9819215 MS.gene54107:intron
TCGTTCATTGACAGAAACAG+GGG 0.681754 1.2:+9816356 MS.gene54107:intron
AGAGACTGGATCTACGGCGA+CGG 0.684123 1.2:-9819386 None:intergenic
GAATTCTTAGTGAAACAACA+CGG 0.775522 1.2:+9816625 MS.gene54107:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAATATAATAGTTTAA+GGG - chr1.2:9818485-9818504 None:intergenic 10.0%
!! ATATATCTTATAAGATTATA+AGG + chr1.2:9820620-9820639 MS.gene54107:intron 10.0%
!!! AATTAAAACAAAATTTTATC+AGG - chr1.2:9815589-9815608 None:intergenic 10.0%
!! AAAGAATATAATAGTTTAAG+GGG - chr1.2:9818484-9818503 None:intergenic 15.0%
!! AATACTCTAAATTAAACATA+AGG - chr1.2:9820485-9820504 None:intergenic 15.0%
!! AGTATTTCTTATAATATGTA+TGG + chr1.2:9820499-9820518 MS.gene54107:intron 15.0%
!! ATAAAAAAATCAATTGAATC+AGG + chr1.2:9816823-9816842 MS.gene54107:intron 15.0%
!! CAAAAATAATAAAAATTGGA+TGG - chr1.2:9818650-9818669 None:intergenic 15.0%
!! CTAAAAAGAAAAAAATATAC+AGG - chr1.2:9817858-9817877 None:intergenic 15.0%
!! CTTGCAAAAATAATAAAAAT+TGG - chr1.2:9818654-9818673 None:intergenic 15.0%
!! GAAAAGAATATAATAGTTTA+AGG - chr1.2:9818486-9818505 None:intergenic 15.0%
!! GATTAATTAATGTTTGAATT+TGG + chr1.2:9817270-9817289 MS.gene54107:intron 15.0%
!! TAATCAATAAAGTAGTATTA+TGG + chr1.2:9819503-9819522 MS.gene54107:intron 15.0%
!! TAATCATATAAATGAGTATT+TGG - chr1.2:9817704-9817723 None:intergenic 15.0%
!! TACTATATGTAAATAAAGTA+CGG + chr1.2:9817079-9817098 MS.gene54107:intron 15.0%
!! TATTAGAAATTCAATAAAAG+TGG - chr1.2:9816317-9816336 None:intergenic 15.0%
!! TTAATTCCAATGTATAATAA+TGG - chr1.2:9817774-9817793 None:intergenic 15.0%
!! TTCAAAAAATATGAAATTGT+AGG + chr1.2:9815771-9815790 MS.gene54107:intron 15.0%
!! TTCGTTACAAAATAAAATAT+CGG + chr1.2:9817516-9817535 MS.gene54107:intron 15.0%
!!! AATTTTCTCTGTTATTTTTT+TGG + chr1.2:9819545-9819564 MS.gene54107:intron 15.0%
!!! ATCATATTTGAAATTTGAAA+TGG + chr1.2:9815399-9815418 MS.gene54107:intron 15.0%
!!! ATTTTGTATTATAAACCTAA+AGG - chr1.2:9819701-9819720 None:intergenic 15.0%
!!! TTAAGTCATTCATTTTTAAA+TGG + chr1.2:9819774-9819793 MS.gene54107:intron 15.0%
!!! TTTTTTAATTATCGATTAGT+GGG + chr1.2:9817227-9817246 MS.gene54107:intron 15.0%
!!! TTTTTTTAATTATCGATTAG+TGG + chr1.2:9817226-9817245 MS.gene54107:intron 15.0%
!! AAATAAATGCATAAAGAAGA+AGG - chr1.2:9815917-9815936 None:intergenic 20.0%
!! AAGTGATTCATTTGTTTAAA+TGG + chr1.2:9819661-9819680 MS.gene54107:intron 20.0%
!! AATAATGTAGAATTTCCATA+AGG - chr1.2:9816241-9816260 None:intergenic 20.0%
!! AATCAGAAAGAAATAATGTT+TGG - chr1.2:9820211-9820230 None:intergenic 20.0%
!! AATTAACCGAAATTTGTAAA+TGG - chr1.2:9815729-9815748 None:intergenic 20.0%
!! ATTTCAATCAATTCAAACAA+AGG - chr1.2:9819158-9819177 None:intergenic 20.0%
!! CAACATTAATCCAATATATA+TGG + chr1.2:9818110-9818129 MS.gene54107:intron 20.0%
!! CTTATAATATTTGATGTATC+TGG + chr1.2:9820701-9820720 MS.gene54107:intron 20.0%
!! GAACATGTTTAAAAAAGATA+AGG - chr1.2:9816771-9816790 None:intergenic 20.0%
!! GAACTAAAAAGAAAAAATAC+AGG - chr1.2:9817952-9817971 None:intergenic 20.0%
!! TATTGAAGCAAAAATATTCA+TGG - chr1.2:9818594-9818613 None:intergenic 20.0%
!!! ATTGATTTTTTCGATTTGAT+AGG + chr1.2:9816582-9816601 MS.gene54107:intron 20.0%
!!! GTAATAAAAGTTGATGTATT+TGG + chr1.2:9820736-9820755 MS.gene54107:intron 20.0%
!!! GTGTTTTAGAATTTAGATTT+AGG + chr1.2:9816057-9816076 MS.gene54107:intron 20.0%
!!! TATGTTTTATATGTGTTGAA+AGG + chr1.2:9816207-9816226 MS.gene54107:intron 20.0%
!!! TCTTATTTGAATTGTATTCA+TGG + chr1.2:9820158-9820177 MS.gene54107:intron 20.0%
!!! TGTTATTGATTTTCTTTGAA+TGG + chr1.2:9819192-9819211 MS.gene54107:intron 20.0%
!!! TTTTTATAAGATGTTTGTTG+AGG + chr1.2:9817305-9817324 MS.gene54107:intron 20.0%
! AAAAAATCACACAAACACAA+AGG - chr1.2:9817478-9817497 None:intergenic 25.0%
! AAAAGAATGATCTTGAATAG+AGG - chr1.2:9818159-9818178 None:intergenic 25.0%
! AAAGCTACAAATTCAACTTA+CGG - chr1.2:9819827-9819846 None:intergenic 25.0%
! AACAACTTTGTGTTTATGTT+AGG + chr1.2:9820841-9820860 MS.gene54107:intron 25.0%
! AATAATTACAGTAAGCTATC+TGG - chr1.2:9817026-9817045 None:intergenic 25.0%
! AATATCTACTTAAAATCCTG+AGG - chr1.2:9819007-9819026 None:intergenic 25.0%
! ACAAAATTTGAATGAAGCTA+GGG - chr1.2:9815328-9815347 None:intergenic 25.0%
! ACAAATATCTCCAATCAAAA+AGG - chr1.2:9817110-9817129 None:intergenic 25.0%
! AGAACAAAACAGTTATAGAA+TGG - chr1.2:9815619-9815638 None:intergenic 25.0%
! AGGAATTTGAACTATTGTAA+AGG + chr1.2:9819620-9819639 MS.gene54107:intron 25.0%
! ATATAGAAGTAGCTTCAAAA+TGG + chr1.2:9815678-9815697 MS.gene54107:intron 25.0%
! ATCAAGCCATTATTATACAT+TGG + chr1.2:9817765-9817784 MS.gene54107:intron 25.0%
! ATTACCCAGATATGAAATTA+TGG - chr1.2:9817590-9817609 None:intergenic 25.0%
! CAAATATCTCCAATCAAAAA+GGG - chr1.2:9817109-9817128 None:intergenic 25.0%
! CAATAGTTCAAATTCCTTAA+TGG - chr1.2:9819617-9819636 None:intergenic 25.0%
! CATGTTTAAAAAAGATAAGG+TGG - chr1.2:9816768-9816787 None:intergenic 25.0%
! CTTCAATATTAATTGTGTCT+TGG + chr1.2:9818606-9818625 MS.gene54107:intron 25.0%
! GAACAAAACAGTTATAGAAT+GGG - chr1.2:9815618-9815637 None:intergenic 25.0%
! GCTTAACCATTTACAAATTT+CGG + chr1.2:9815720-9815739 MS.gene54107:intron 25.0%
! TAAGCCATAATTTCATATCT+GGG + chr1.2:9817583-9817602 MS.gene54107:intron 25.0%
! TAATCTATTCAGAGATCAAT+CGG + chr1.2:9815195-9815214 MS.gene54107:CDS 25.0%
! TATTCGTTTGTTTATGCATT+TGG + chr1.2:9815373-9815392 MS.gene54107:intron 25.0%
! TTACAAATTCAATGTAGCTA+GGG - chr1.2:9819740-9819759 None:intergenic 25.0%
! TTCTTTCACTCAATTTAGTA+CGG + chr1.2:9816725-9816744 MS.gene54107:intron 25.0%
!! AATTTGAAATGGCGAATTTA+TGG + chr1.2:9815410-9815429 MS.gene54107:intron 25.0%
!! ACATTCGATTATGTATTTTC+CGG + chr1.2:9818066-9818085 MS.gene54107:intron 25.0%
!! TATTAAGACTTTTGCCATTA+AGG + chr1.2:9819600-9819619 MS.gene54107:intron 25.0%
!! TCTCACATTTAAATGGTTTT+TGG + chr1.2:9819063-9819082 MS.gene54107:intron 25.0%
!! TTGTTATTAACAGCATAAAG+TGG + chr1.2:9818251-9818270 MS.gene54107:intron 25.0%
!!! AATCAAATTAAGTTGAATGG+TGG + chr1.2:9818274-9818293 MS.gene54107:intron 25.0%
!!! ACTTAAGTTGAATTGTGTAT+AGG + chr1.2:9817332-9817351 MS.gene54107:intron 25.0%
!!! ATCAAATTAAGTTGAATGGT+GGG + chr1.2:9818275-9818294 MS.gene54107:intron 25.0%
!!! TAGTGTTTTTAAATCACTGT+TGG - chr1.2:9820598-9820617 None:intergenic 25.0%
!!! TGGAATCAAATTAAGTTGAA+TGG + chr1.2:9818271-9818290 MS.gene54107:intron 25.0%
!!! TGTATGGTTTTTTTAATTGC+AGG + chr1.2:9820515-9820534 MS.gene54107:intron 25.0%
!!! TTTTGATTGGAGATATTTGT+TGG + chr1.2:9817110-9817129 MS.gene54107:intron 25.0%
!!! TTTTTTCGATTTGATAGGAA+AGG + chr1.2:9816587-9816606 MS.gene54107:intron 25.0%
!!! TTTTTTCTTCATATTTGACG+AGG + chr1.2:9817652-9817671 MS.gene54107:intron 25.0%
AAACTAAAAACGCATACTGA+GGG - chr1.2:9816500-9816519 None:intergenic 30.0%
AAAGTAGTAGTACCTTTGTA+TGG - chr1.2:9817445-9817464 None:intergenic 30.0%
AAATTCAACTTACGGTAAAG+TGG - chr1.2:9819819-9819838 None:intergenic 30.0%
AAGTAAAGCCTTGAATCATT+TGG + chr1.2:9819968-9819987 MS.gene54107:intron 30.0%
AATGCAGCACAATTCAAAAT+TGG - chr1.2:9818859-9818878 None:intergenic 30.0%
AATTCAACTTACGGTAAAGT+GGG - chr1.2:9819818-9819837 None:intergenic 30.0%
ACACATTTGTAACGCAAAAA+GGG - chr1.2:9816039-9816058 None:intergenic 30.0%
ACATGTGCACAAACTTTAAT+TGG + chr1.2:9818922-9818941 MS.gene54107:intron 30.0%
AGCTCATTAGTACATATTGT+TGG + chr1.2:9820132-9820151 MS.gene54107:intron 30.0%
ATAACTACATCTTATGCAAG+AGG + chr1.2:9818946-9818965 MS.gene54107:intron 30.0%
ATAATAGTTTAAGGGGAATG+TGG - chr1.2:9818477-9818496 None:intergenic 30.0%
ATCAAATGAAGTTGAATGGT+GGG + chr1.2:9818298-9818317 MS.gene54107:intron 30.0%
ATGCATTTCAAGAGTTTACT+CGG + chr1.2:9820661-9820680 MS.gene54107:intron 30.0%
ATGTACTAATGAGCTATCAA+AGG - chr1.2:9820127-9820146 None:intergenic 30.0%
ATTGGATTCGTATTCGTATT+CGG - chr1.2:9815242-9815261 None:intergenic 30.0%
CAAATTGACAAAAAACACAC+AGG - chr1.2:9818793-9818812 None:intergenic 30.0%
CACAAAATTTGAATGAAGCT+AGG - chr1.2:9815329-9815348 None:intergenic 30.0%
CTAAGCCATAATTTCATATC+TGG + chr1.2:9817582-9817601 MS.gene54107:intron 30.0%
CTACATGTCTCACATTTAAA+TGG + chr1.2:9819056-9819075 MS.gene54107:intron 30.0%
CTTACAAATTCAATGTAGCT+AGG - chr1.2:9819741-9819760 None:intergenic 30.0%
GAATTCTTAGTGAAACAACA+CGG + chr1.2:9816625-9816644 MS.gene54107:CDS 30.0%
GGAAAATACATAATCGAATG+TGG - chr1.2:9818067-9818086 None:intergenic 30.0%
GTTCATTATGTTAGTCCTTT+AGG + chr1.2:9819683-9819702 MS.gene54107:intron 30.0%
TAGGCATTCAAGAATGTAAT+AGG - chr1.2:9816101-9816120 None:intergenic 30.0%
TCTGTTTAGAAAGCTATTTG+TGG + chr1.2:9820430-9820449 MS.gene54107:intron 30.0%
TGTGCTGCATTATTCATTTA+GGG + chr1.2:9818868-9818887 MS.gene54107:intron 30.0%
TGTTACTAAAACACACATGT+AGG - chr1.2:9816120-9816139 None:intergenic 30.0%
TTGAGCAGTGTGTATAATAA+TGG - chr1.2:9817808-9817827 None:intergenic 30.0%
TTGTGCTGCATTATTCATTT+AGG + chr1.2:9818867-9818886 MS.gene54107:intron 30.0%
! AATTAGGGTTTTTGTATCGT+CGG + chr1.2:9816549-9816568 MS.gene54107:intron 30.0%
! GATTTTCTTTGAATGGATCA+GGG + chr1.2:9819199-9819218 MS.gene54107:intron 30.0%
! GCTTGACTTTATAGTCTTTT+AGG + chr1.2:9817046-9817065 MS.gene54107:intron 30.0%
! GGATTTTTGTTGAAGAACAT+TGG + chr1.2:9820369-9820388 MS.gene54107:intron 30.0%
! GTTCTATCAATTCCTGTTTT+AGG + chr1.2:9816787-9816806 MS.gene54107:intron 30.0%
! TGATTTTCTTTGAATGGATC+AGG + chr1.2:9819198-9819217 MS.gene54107:intron 30.0%
! TTTGTACCTTTTACTACTGT+TGG + chr1.2:9819869-9819888 MS.gene54107:intron 30.0%
! TTTTCTTACTATTCTACTGC+TGG + chr1.2:9820348-9820367 MS.gene54107:intron 30.0%
!! AGCTTTAGAAACATCAATTG+CGG + chr1.2:9815802-9815821 MS.gene54107:intron 30.0%
!! ATACAAAGGTACTACTACTT+TGG + chr1.2:9817444-9817463 MS.gene54107:intron 30.0%
!! ATTAGTGCTGTTATTTCTCA+TGG + chr1.2:9819904-9819923 MS.gene54107:intron 30.0%
!! CGATTTTGATATCGCAATTA+GGG + chr1.2:9816534-9816553 MS.gene54107:intron 30.0%
!! GTTGATTCTGTTTTGGATAT+GGG + chr1.2:9817402-9817421 MS.gene54107:intron 30.0%
!! TCGATTTTGATATCGCAATT+AGG + chr1.2:9816533-9816552 MS.gene54107:intron 30.0%
!!! ACTCTGCAACAAACATTTTT+TGG - chr1.2:9818739-9818758 None:intergenic 30.0%
!!! CAAGATATTTTTGGTTGGAT+TGG + chr1.2:9819245-9819264 MS.gene54107:CDS 30.0%
!!! GAAGATTGTTGATTCTGTTT+TGG + chr1.2:9817395-9817414 MS.gene54107:intron 30.0%
!!! GTTTTTTGTCAATTTGCTTC+TGG + chr1.2:9818797-9818816 MS.gene54107:intron 30.0%
!!! TGCTTTTTTCCACCTAAAAT+AGG - chr1.2:9816982-9817001 None:intergenic 30.0%
!!! TGTTGATTCTGTTTTGGATA+TGG + chr1.2:9817401-9817420 MS.gene54107:intron 30.0%
AAAACTTGAAGAGGCTGATT+CGG - chr1.2:9816430-9816449 None:intergenic 35.0%
AAATTGGAATTCGGCGAAAT+TGG + chr1.2:9816669-9816688 MS.gene54107:CDS 35.0%
AACAGGTCAAGAATCAAGAT+AGG + chr1.2:9820888-9820907 MS.gene54107:CDS 35.0%
AATCTCCTATGACCTAAAAC+AGG - chr1.2:9816802-9816821 None:intergenic 35.0%
ACAAAAAACACACAGGATAG+GGG - chr1.2:9818786-9818805 None:intergenic 35.0%
AGCAGCAAAAAAGAGTTATG+GGG + chr1.2:9818325-9818344 MS.gene54107:intron 35.0%
CACACATTTGTAACGCAAAA+AGG - chr1.2:9816040-9816059 None:intergenic 35.0%
CATTAAAGGTTGTTTACCTC+AGG + chr1.2:9818988-9819007 MS.gene54107:intron 35.0%
GAAACTAAAAACGCATACTG+AGG - chr1.2:9816501-9816520 None:intergenic 35.0%
GAATGATCTTGAATAGAGGA+TGG - chr1.2:9818155-9818174 None:intergenic 35.0%
GACAAAAAACACACAGGATA+GGG - chr1.2:9818787-9818806 None:intergenic 35.0%
GAGCAGCAAAAAAGAGTTAT+GGG + chr1.2:9818324-9818343 MS.gene54107:intron 35.0%
GATCAAATGAAGTTGAATGG+TGG + chr1.2:9818297-9818316 MS.gene54107:intron 35.0%
GATGGAGCAAATTGAAACAA+AGG - chr1.2:9818632-9818651 None:intergenic 35.0%
GTGCTGCATTATTCATTTAG+GGG + chr1.2:9818869-9818888 MS.gene54107:intron 35.0%
GTTGAAAGTGAAACTCAATG+AGG - chr1.2:9816009-9816028 None:intergenic 35.0%
TAACAACAACATATTGTCGC+CGG - chr1.2:9818088-9818107 None:intergenic 35.0%
TACGAACCAACAGTAGTAAA+AGG - chr1.2:9819878-9819897 None:intergenic 35.0%
TATCAAAGAGACTGGATCTA+CGG - chr1.2:9819395-9819414 None:intergenic 35.0%
TCAAATGAAGTTGAATGGTG+GGG + chr1.2:9818299-9818318 MS.gene54107:intron 35.0%
TCCATGCTACATGTCATTAA+TGG - chr1.2:9820009-9820028 None:intergenic 35.0%
TCCATTAATGACATGTAGCA+TGG + chr1.2:9820005-9820024 MS.gene54107:intron 35.0%
TCTTTGACGAAAACTTGAAG+AGG - chr1.2:9816439-9816458 None:intergenic 35.0%
TGACAAAAAACACACAGGAT+AGG - chr1.2:9818788-9818807 None:intergenic 35.0%
TGAGCAGCAAAAAAGAGTTA+TGG + chr1.2:9818323-9818342 MS.gene54107:intron 35.0%
TGGGATCAAATGAAGTTGAA+TGG + chr1.2:9818294-9818313 MS.gene54107:intron 35.0%
TGTAGAATGAAGAAGCTATC+TGG + chr1.2:9816890-9816909 MS.gene54107:intron 35.0%
TTCATATCTGGGTAATCAAC+AGG + chr1.2:9817594-9817613 MS.gene54107:intron 35.0%
TTCGTTCATTGACAGAAACA+GGG + chr1.2:9816355-9816374 MS.gene54107:intron 35.0%
TTTAGAAACATCAATTGCGG+TGG + chr1.2:9815805-9815824 MS.gene54107:intron 35.0%
TTTATGGTATTGCAGGATGA+AGG + chr1.2:9815426-9815445 MS.gene54107:intron 35.0%
TTTCGTTCATTGACAGAAAC+AGG + chr1.2:9816354-9816373 MS.gene54107:intron 35.0%
TTTGGCACAAAGTTCAGATT+AGG - chr1.2:9817686-9817705 None:intergenic 35.0%
! AGAGCTCTTCTTCCTATTTT+AGG + chr1.2:9816967-9816986 MS.gene54107:intron 35.0%
! TACGGATTTCCCTTTTTGAT+TGG + chr1.2:9817097-9817116 MS.gene54107:intron 35.0%
! TTCCATGCAACATCATTTTC+AGG + chr1.2:9816465-9816484 MS.gene54107:CDS 35.0%
! TTGCAGCTCATTACAGATTT+TGG + chr1.2:9815747-9815766 MS.gene54107:intron 35.0%
!! CAATTCCTGTTTTAGGTCAT+AGG + chr1.2:9816794-9816813 MS.gene54107:intron 35.0%
!! CAATTTGCTTCTGGTTTGTA+AGG + chr1.2:9818806-9818825 MS.gene54107:intron 35.0%
!! GGAAGAGCACAAGATATTTT+TGG + chr1.2:9819236-9819255 MS.gene54107:CDS 35.0%
!! TAGCAGGTTTGTTACTTACA+AGG + chr1.2:9818829-9818848 MS.gene54107:intron 35.0%
!! TCTTAGCCTTTTTGTATGGT+GGG - chr1.2:9816175-9816194 None:intergenic 35.0%
!! TTTTGGGGGAAATTGGAATT+CGG + chr1.2:9816660-9816679 MS.gene54107:CDS 35.0%
!!! GAGCACAAGATATTTTTGGT+TGG + chr1.2:9819240-9819259 MS.gene54107:CDS 35.0%
!!! GGTGGTCTATTGATTCTTTT+GGG - chr1.2:9818392-9818411 None:intergenic 35.0%
!!! GTGGTCTATTGATTCTTTTG+GGG - chr1.2:9818391-9818410 None:intergenic 35.0%
AAAGAGTAATGCAACCGTAC+AGG - chr1.2:9817561-9817580 None:intergenic 40.0%
AAGAAGTAGAGAGTGAAGGT+GGG + chr1.2:9815496-9815515 MS.gene54107:CDS 40.0%
AAGAGTAATGCAACCGTACA+GGG - chr1.2:9817560-9817579 None:intergenic 40.0%
AATCTTACCGAATTGAGTCG+AGG - chr1.2:9815265-9815284 None:intergenic 40.0%
ACGATTCTGATGACATGGAA+TGG + chr1.2:9818416-9818435 MS.gene54107:intron 40.0%
AGAAAGTGGGAAAAGGTGAT+TGG + chr1.2:9819268-9819287 MS.gene54107:CDS 40.0%
AGTGGCTCGAATCTTAATCA+AGG + chr1.2:9815880-9815899 MS.gene54107:CDS 40.0%
ATCCAATCCTCGACTCAATT+CGG + chr1.2:9815255-9815274 MS.gene54107:CDS 40.0%
ATTCAGAGATCAATCGGAAG+AGG + chr1.2:9815201-9815220 MS.gene54107:CDS 40.0%
CAAAAAACACACAGGATAGG+GGG - chr1.2:9818785-9818804 None:intergenic 40.0%
CATGTCATCAGAATCGTTCA+CGG - chr1.2:9818413-9818432 None:intergenic 40.0%
CATTCTCTCTGAGCAAACAA+TGG + chr1.2:9819033-9819052 MS.gene54107:intron 40.0%
CCACTTGGATTGAGCATTAA+AGG + chr1.2:9818974-9818993 MS.gene54107:intron 40.0%
CCATACAAAAAGGCTAAGAG+AGG + chr1.2:9816176-9816195 MS.gene54107:intron 40.0%
CCTTTAATGCTCAATCCAAG+TGG - chr1.2:9818977-9818996 None:intergenic 40.0%
GAAGAAAGTTAACGCAGAGA+TGG - chr1.2:9818043-9818062 None:intergenic 40.0%
GAAGAAGAAGTAGAGAGTGA+AGG + chr1.2:9815492-9815511 MS.gene54107:CDS 40.0%
GAATGAAGATCCTGCAAACT+TGG + chr1.2:9820069-9820088 MS.gene54107:intron 40.0%
GAATTGTGTATAGGTGACTG+TGG + chr1.2:9817341-9817360 MS.gene54107:intron 40.0%
GCAGTACACCAAATGATTCA+AGG - chr1.2:9819979-9819998 None:intergenic 40.0%
GTCCTGAAAATGATGTTGCA+TGG - chr1.2:9816470-9816489 None:intergenic 40.0%
GTGGCTCGAATCTTAATCAA+GGG + chr1.2:9815881-9815900 MS.gene54107:CDS 40.0%
TACTGCTTCTAGACAGAAAC+AGG + chr1.2:9817203-9817222 MS.gene54107:intron 40.0%
TCAAATCCAACCAAGTTTGC+AGG - chr1.2:9820082-9820101 None:intergenic 40.0%
TCAAATCTAGCTGCATGGTT+GGG + chr1.2:9820299-9820318 MS.gene54107:intron 40.0%
TCGTTCATTGACAGAAACAG+GGG + chr1.2:9816356-9816375 MS.gene54107:intron 40.0%
TCTACTCCCACCATACAAAA+AGG + chr1.2:9816166-9816185 MS.gene54107:intron 40.0%
TGAAAGGAGATGCTTCCTTA+TGG + chr1.2:9816223-9816242 MS.gene54107:intron 40.0%
TGACTTCAAATCTAGCTGCA+TGG + chr1.2:9820294-9820313 MS.gene54107:intron 40.0%
TGCCGAAAAAATTACCGTGT+CGG - chr1.2:9819424-9819443 None:intergenic 40.0%
TGGCGAATTTATGGTATTGC+AGG + chr1.2:9815419-9815438 MS.gene54107:intron 40.0%
TGTAGCTAGGGACTTTCATT+AGG - chr1.2:9819728-9819747 None:intergenic 40.0%
TTAGGTATCTGCAATTCCAG+TGG + chr1.2:9820859-9820878 MS.gene54107:intron 40.0%
TTCAAATCTAGCTGCATGGT+TGG + chr1.2:9820298-9820317 MS.gene54107:intron 40.0%
TTGGTTTCGTGAGAAGAATG+TGG + chr1.2:9817129-9817148 MS.gene54107:intron 40.0%
! ATGATACGTTCGGCTTGATT+CGG - chr1.2:9816398-9816417 None:intergenic 40.0%
! CTGTTATCAAAAGTGTGCGA+AGG - chr1.2:9820187-9820206 None:intergenic 40.0%
! GAGCTATCAAAGGTACGATT+TGG - chr1.2:9820117-9820136 None:intergenic 40.0%
! GTGGTAGCAAAGGTATACTA+GGG + chr1.2:9817360-9817379 MS.gene54107:intron 40.0%
! TGTGGTAGCAAAGGTATACT+AGG + chr1.2:9817359-9817378 MS.gene54107:intron 40.0%
! TGTTGGAGCGCCATATATAT+TGG - chr1.2:9818123-9818142 None:intergenic 40.0%
! TTGGTTGGATTGGAGAAAGT+GGG + chr1.2:9819255-9819274 MS.gene54107:CDS 40.0%
! TTTGGTTGGATTGGAGAAAG+TGG + chr1.2:9819254-9819273 MS.gene54107:CDS 40.0%
!! AAGGTACGATTTGGTGCATA+AGG - chr1.2:9820108-9820127 None:intergenic 40.0%
!! CCTCTCTTAGCCTTTTTGTA+TGG - chr1.2:9816179-9816198 None:intergenic 40.0%
!! CTCTTAGCCTTTTTGTATGG+TGG - chr1.2:9816176-9816195 None:intergenic 40.0%
!! GAAGGATTTTTGGGGGAAAT+TGG + chr1.2:9816653-9816672 MS.gene54107:CDS 40.0%
!! GCTCTTCTTCCTATTTTAGG+TGG + chr1.2:9816970-9816989 MS.gene54107:intron 40.0%
!!! CACCGACACGGTAATTTTTT+CGG + chr1.2:9819419-9819438 MS.gene54107:intron 40.0%
!!! CGGTGGTCTATTGATTCTTT+TGG - chr1.2:9818393-9818412 None:intergenic 40.0%
!!! TATTGATTCTTTTGGGGCTG+CGG - chr1.2:9818385-9818404 None:intergenic 40.0%
AATGTGGCTTACATGATCGG+GGG - chr1.2:9818461-9818480 None:intergenic 45.0%
ATAGGTGACTGTGGTAGCAA+AGG + chr1.2:9817350-9817369 MS.gene54107:intron 45.0%
ATGAAGGAGAGAGAAGGGTA+GGG + chr1.2:9815442-9815461 MS.gene54107:CDS 45.0%
ATGCAAGAGGAACTTCCACT+TGG + chr1.2:9818959-9818978 MS.gene54107:intron 45.0%
ATGTCCAAAACCTCAGCATC+AGG - chr1.2:9817177-9817196 None:intergenic 45.0%
CATCAGGTTCCACTTCATAC+TGG - chr1.2:9817161-9817180 None:intergenic 45.0%
CGAAAAAATTACCGTGTCGG+TGG - chr1.2:9819421-9819440 None:intergenic 45.0%
CGTGAACGATTCTGATGACA+TGG + chr1.2:9818411-9818430 MS.gene54107:intron 45.0%
CTTGCAGAACTATCCCTGTA+CGG + chr1.2:9817544-9817563 MS.gene54107:intron 45.0%
CTTTGATATCACCACCGACA+CGG + chr1.2:9819407-9819426 MS.gene54107:CDS 45.0%
GAAGAAGTAGAGAGTGAAGG+TGG + chr1.2:9815495-9815514 MS.gene54107:CDS 45.0%
GAAGATCCTGCAAACTTGGT+TGG + chr1.2:9820073-9820092 MS.gene54107:intron 45.0%
GAATGTGGCTTACATGATCG+GGG - chr1.2:9818462-9818481 None:intergenic 45.0%
GACGGCGATTGAGATTACTT+CGG - chr1.2:9819371-9819390 None:intergenic 45.0%
GAGGATGGACACATTGTTGT+TGG - chr1.2:9818140-9818159 None:intergenic 45.0%
GATATGGGTAGCAGGAGTTT+GGG + chr1.2:9817417-9817436 MS.gene54107:intron 45.0%
GGAATGTGGCTTACATGATC+GGG - chr1.2:9818463-9818482 None:intergenic 45.0%
GGATTGGAGAAAGTGGGAAA+AGG + chr1.2:9819261-9819280 MS.gene54107:CDS 45.0%
GGGAATGTGGCTTACATGAT+CGG - chr1.2:9818464-9818483 None:intergenic 45.0%
GGTGGTGATATCAAAGAGAC+TGG - chr1.2:9819403-9819422 None:intergenic 45.0%
GTCCATACCAACACAACTTG+CGG - chr1.2:9820567-9820586 None:intergenic 45.0%
GTGATTGGAGAGGAATCTCA+AGG + chr1.2:9819283-9819302 MS.gene54107:CDS 45.0%
TACCACCGCAAAAACCATCA+CGG - chr1.2:9815851-9815870 None:intergenic 45.0%
TACCGAATTGAGTCGAGGAT+TGG - chr1.2:9815260-9815279 None:intergenic 45.0%
TCCATACCAACACAACTTGC+GGG - chr1.2:9820566-9820585 None:intergenic 45.0%
TTACATGATCGGGGGATTGA+TGG - chr1.2:9818453-9818472 None:intergenic 45.0%
TTAGTGAAACAACACGGTCG+CGG + chr1.2:9816631-9816650 MS.gene54107:CDS 45.0%
!! CTGTTTTGGATATGGGTAGC+AGG + chr1.2:9817409-9817428 MS.gene54107:intron 45.0%
!! CTTCTGGTTTGTAAGGTAGC+AGG + chr1.2:9818813-9818832 MS.gene54107:intron 45.0%
!! TGACATGGAATGGTGTTGCT+CGG + chr1.2:9818426-9818445 MS.gene54107:intron 45.0%
AACGCATACTGAGGGATCGA+AGG - chr1.2:9816492-9816511 None:intergenic 50.0%
AAGTAGAGAGTGAAGGTGGG+AGG + chr1.2:9815499-9815518 MS.gene54107:CDS 50.0%
AATTCCAGTGGAGGCAGAAC+AGG + chr1.2:9820871-9820890 MS.gene54107:CDS 50.0%
AGTAGAGAGTGAAGGTGGGA+GGG + chr1.2:9815500-9815519 MS.gene54107:CDS 50.0%
GAGTTATGGGGTTCAAAGCC+AGG + chr1.2:9818337-9818356 MS.gene54107:intron 50.0%
GATGAAGGAGAGAGAAGGGT+AGG + chr1.2:9815441-9815460 MS.gene54107:CDS 50.0%
GATGTCGGCGATGATACGTT+CGG - chr1.2:9816408-9816427 None:intergenic 50.0%
GCAGGATGAAGGAGAGAGAA+GGG + chr1.2:9815437-9815456 MS.gene54107:intron 50.0%
GCGGTGGTAATTGCATGTAG+TGG + chr1.2:9815862-9815881 MS.gene54107:CDS 50.0%
GGATATGGGTAGCAGGAGTT+TGG + chr1.2:9817416-9817435 MS.gene54107:intron 50.0%
GGCGATTGAGATTACTTCGG+CGG - chr1.2:9819368-9819387 None:intergenic 50.0%
GGCTGAGAAGAGACTGCTAT+TGG + chr1.2:9818890-9818909 MS.gene54107:intron 50.0%
GGTATCTGCAATTCCAGTGG+AGG + chr1.2:9820862-9820881 MS.gene54107:intron 50.0%
GTCATCAGAATCGTTCACGG+TGG - chr1.2:9818410-9818429 None:intergenic 50.0%
GTGGGAAAAGGTGATTGGAG+AGG + chr1.2:9819273-9819292 MS.gene54107:CDS 50.0%
TAACAGCCCGCAAGTTGTGT+TGG + chr1.2:9820557-9820576 MS.gene54107:CDS 50.0%
TGAAGTGGAACCTGATGCTG+AGG + chr1.2:9817164-9817183 MS.gene54107:intron 50.0%
TGAATGGATCAGGGATTCCG+TGG + chr1.2:9819208-9819227 MS.gene54107:intron 50.0%
TGCAGGATGAAGGAGAGAGA+AGG + chr1.2:9815436-9815455 MS.gene54107:intron 50.0%
TTGTGCTCTTCCTCAGTCCA+CGG - chr1.2:9819228-9819247 None:intergenic 50.0%
! ACGGTCGCGGAAGGATTTTT+GGG + chr1.2:9816644-9816663 MS.gene54107:CDS 50.0%
! GCATGACTTGCAACATGCGT+AGG - chr1.2:9819330-9819349 None:intergenic 50.0%
! GGAACCTGATGCTGAGGTTT+TGG + chr1.2:9817170-9817189 MS.gene54107:intron 50.0%
! GGAGTTTGGGTGCCATACAA+AGG + chr1.2:9817430-9817449 MS.gene54107:intron 50.0%
!! GAAGAGGCTGATTCGGATGT+CGG - chr1.2:9816423-9816442 None:intergenic 50.0%
!! TTCGGCTTGATTCGGAGTCT+CGG - chr1.2:9816390-9816409 None:intergenic 50.0%
AGAGACTGGATCTACGGCGA+CGG - chr1.2:9819389-9819408 None:intergenic 55.0%
AGGGTAGGGCAAGAAGGTGA+AGG + chr1.2:9815456-9815475 MS.gene54107:CDS 55.0%
ATGGCAGCACAACTGCTTCC+TGG - chr1.2:9818358-9818377 None:intergenic 55.0%
GAGAGAAGGGTAGGGCAAGA+AGG + chr1.2:9815450-9815469 MS.gene54107:CDS 55.0%
GGGCAAGAAGGTGAAGGACA+AGG + chr1.2:9815462-9815481 MS.gene54107:CDS 55.0%
TGAAACAACACGGTCGCGGA+AGG + chr1.2:9816635-9816654 MS.gene54107:CDS 55.0%
TGGTGCGCACCAGTATGAAG+TGG + chr1.2:9817149-9817168 MS.gene54107:intron 55.0%
TTGACCTGTTCTGCCTCCAC+TGG - chr1.2:9820878-9820897 None:intergenic 55.0%
! ATCAGGGATTCCGTGGACTG+AGG + chr1.2:9819215-9819234 MS.gene54107:intron 55.0%
! CACGGTCGCGGAAGGATTTT+TGG + chr1.2:9816643-9816662 MS.gene54107:CDS 55.0%
! CGGTCGCGGAAGGATTTTTG+GGG + chr1.2:9816645-9816664 MS.gene54107:CDS 55.0%
! GCCCGCAAGTTGTGTTGGTA+TGG + chr1.2:9820562-9820581 MS.gene54107:intron 55.0%
! GCTCGCCGTGATGGTTTTTG+CGG + chr1.2:9815843-9815862 MS.gene54107:CDS 55.0%
!! GGTCGCGGAAGGATTTTTGG+GGG + chr1.2:9816646-9816665 MS.gene54107:CDS 55.0%
AGAGAGTGAAGGTGGGAGGG+AGG + chr1.2:9815503-9815522 MS.gene54107:CDS 60.0%
CATGTAGCAGCTCGCCGTGA+TGG + chr1.2:9815834-9815853 MS.gene54107:intron 60.0%
! CGCCGTGATGGTTTTTGCGG+TGG + chr1.2:9815846-9815865 MS.gene54107:CDS 60.0%
!!! CTTTTGGGGCTGCGGTGAGA+TGG - chr1.2:9818377-9818396 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 9815187 9820916 9815187 ID=MS.gene54107
chr1.2 mRNA 9815187 9820916 9815187 ID=MS.gene54107.t1;Parent=MS.gene54107
chr1.2 exon 9815187 9815276 9815187 ID=MS.gene54107.t1.exon1;Parent=MS.gene54107.t1
chr1.2 CDS 9815187 9815276 9815187 ID=cds.MS.gene54107.t1;Parent=MS.gene54107.t1
chr1.2 exon 9815441 9815524 9815441 ID=MS.gene54107.t1.exon2;Parent=MS.gene54107.t1
chr1.2 CDS 9815441 9815524 9815441 ID=cds.MS.gene54107.t1;Parent=MS.gene54107.t1
chr1.2 exon 9815841 9815902 9815841 ID=MS.gene54107.t1.exon3;Parent=MS.gene54107.t1
chr1.2 CDS 9815841 9815902 9815841 ID=cds.MS.gene54107.t1;Parent=MS.gene54107.t1
chr1.2 exon 9816370 9816502 9816370 ID=MS.gene54107.t1.exon4;Parent=MS.gene54107.t1
chr1.2 CDS 9816370 9816502 9816370 ID=cds.MS.gene54107.t1;Parent=MS.gene54107.t1
chr1.2 exon 9816604 9816703 9816604 ID=MS.gene54107.t1.exon5;Parent=MS.gene54107.t1
chr1.2 CDS 9816604 9816703 9816604 ID=cds.MS.gene54107.t1;Parent=MS.gene54107.t1
chr1.2 exon 9819220 9819428 9819220 ID=MS.gene54107.t1.exon6;Parent=MS.gene54107.t1
chr1.2 CDS 9819220 9819428 9819220 ID=cds.MS.gene54107.t1;Parent=MS.gene54107.t1
chr1.2 exon 9820537 9820578 9820537 ID=MS.gene54107.t1.exon7;Parent=MS.gene54107.t1
chr1.2 CDS 9820537 9820578 9820537 ID=cds.MS.gene54107.t1;Parent=MS.gene54107.t1
chr1.2 exon 9820863 9820916 9820863 ID=MS.gene54107.t1.exon8;Parent=MS.gene54107.t1
chr1.2 CDS 9820863 9820916 9820863 ID=cds.MS.gene54107.t1;Parent=MS.gene54107.t1
Gene Sequence

>MS.gene54107

ATGATGCATAATCTATTCAGAGATCAATCGGAAGAGGAAGAAGAACTCGAATCCGAATACGAATACGAATCCAATCCTCGACTCAATTCGGTAAGATTATCATTCAATTCTGCGTAATTTCAATATATTTTTTCTATACCCTAGCTTCATTCAAATTTTGTGTGAAATTTCAATTGATCTGATACATATTCGTTTGTTTATGCATTTGGAAGATCATATTTGAAATTTGAAATGGCGAATTTATGGTATTGCAGGATGAAGGAGAGAGAAGGGTAGGGCAAGAAGGTGAAGGACAAGGAGTGTTTGAAGAAGAAGTAGAGAGTGAAGGTGGGAGGGAGGTTGATGTCGCACAAACTTTCTCATCTCTTTTTTCTTCTCTGTCTTTCTTCATTTTTTTTTCCTGATAAAATTTTGTTTTAATTTGTTCACCCATTCTATAACTGTTTTGTTCTAATTTCATTTCTCTTCTTCTGTTTTTTTTTTGTGTGTTGATATAGAAGTAGCTTCAAAATGGTATTGTCTATATTACTTACGCTTAACCATTTACAAATTTCGGTTAATTGCAGCTCATTACAGATTTTGGCTTCAAAAAATATGAAATTGTAGGCTTGCTGCAGCTTTAGAAACATCAATTGCGGTGGTGATTTCATGTAGCAGCTCGCCGTGATGGTTTTTGCGGTGGTAATTGCATGTAGTGGCTCGAATCTTAATCAAGGGTGAGTTGTTTCCTTCTTCTTTATGCATTTATTTATATTCAATCGCTTTTTGTTTAAGTTTTTTTGCTTTAGTTTCTTCTACTTTTACATGTTTGATTGAATGCCTCATTGAGTTTCACTTTCAACACTCATGCCCTTTTTGCGTTACAAATGTGTGTTTTAGAATTTAGATTTAGGCTTGAAATCGTCTCTTATCCTATTACATTCTTGAATGCCTACATGTGTGTTTTAGTAACAGTTTTGTCATACTAAAAACAGATTATTCTACTCCCACCATACAAAAAGGCTAAGAGAGGTAAGTATCTATGTTTTATATGTGTTGAAAGGAGATGCTTCCTTATGGAAATTCTACATTATTGTTTAACATTTCAAAGCAATGCAGTCTAATCATGCATATTTATGCATATTTATCCACTTTTATTGAATTTCTAATATTCTAATTTTTATTCACTTTCGTTCATTGACAGAAACAGGGGTATCATCGCCGAGACTCCGAATCAAGCCGAACGTATCATCGCCGACATCCGAATCAGCCTCTTCAAGTTTTCGTCAAAGAGAATGCTTCCATGCAACATCATTTTCAGGACCTTCGATCCCTCAGTATGCGTTTTTAGTTTCGTTAAATTTTGATCGATTTTGATATCGCAATTAGGGTTTTTGTATCGTCGGTGTTGTTTTGATTGATTTTTTCGATTTGATAGGAAAGGAGCTTGAAGAAGCTAGAATTCTTAGTGAAACAACACGGTCGCGGAAGGATTTTTGGGGGAAATTGGAATTCGGCGAAATTGGAATTATTTGAGTGTGAGAATTAGAGCTCTATCTTTCTTTCACTCAATTTAGTACGGTTTGCAAATTTCTTCTACCACCTTATCTTTTTTAAACATGTTCTATCAATTCCTGTTTTAGGTCATAGGAGATTGATAAAAAAATCAATTGAATCAGGAAGAAAAGCTCTAATTTTATGAACTATGATCAACTGAATAAAGTTGTAGAATGAAGAAGCTATCTGGAATTATTGCTTACTTGATTCAAAATCTTACTGTAATAACACATAAGCTATAATCAGAGCTCTTCTTCCTATTTTAGGTGGAAAAAAGCATGAAATATCTTCTTTAATAAACCAGATAGCTTACTGTAATTATTGCTTGACTTTATAGTCTTTTAGGTGTTTGTCTGTACTATATGTAAATAAAGTACGGATTTCCCTTTTTGATTGGAGATATTTGTTGGTTTCGTGAGAAGAATGTGGTGCGCACCAGTATGAAGTGGAACCTGATGCTGAGGTTTTGGACATACTTGATACTGCTTCTAGACAGAAACAGGTTTTTTTAATTATCGATTAGTGGGTTGTTTTTTTTTAATGTTTTGATTAATTAATGTTTGAATTTGGTTAAGTTAACATTTTTTATAAGATGTTTGTTGAGGTTTCACTTAAGTTGAATTGTGTATAGGTGACTGTGGTAGCAAAGGTATACTAGGGTGATGCAAGAGAGAAGATTGTTGATTCTGTTTTGGATATGGGTAGCAGGAGTTTGGGTGCCATACAAAGGTACTACTACTTTGGTTTGTTTTCCTTTGTGTTTGTGTGATTTTTTTCTTTATTGAAATATGATTTCGTTACAAAATAAAATATCGGAATTGCTTGCAGAACTATCCCTGTACGGTTGCATTACTCTTTTCTAAGCCATAATTTCATATCTGGGTAATCAACAGGTTGTTTGATTTAATTGTAACTGCATTTTATTCTTTTTTTTTCTTCATATTTGACGAGGCTAACTAACCTAATCTGAACTTTGTGCCAAATACTCATTTATATGATTACTCGAAAAAAAAATTTGATTTTAAAACTTCATATATGTGTAATCAAGCCATTATTATACATTGGAATTAAGAGTAATCAAGCCATTATTATACACACTGCTCAAACACGACTTTATTTTGAGACTTGAATTCCTGTATATTTTTTTCTTTTTAGTTCATGCGCAGTGTATCTTTGAAAGTTGTATACACAATGCTCAAACACGACTTTATTTTGAGACTTGAATTCCTGTATTTTTTCTTTTTAGTTCATGCGCAGTTTATATTTGAAAGTTGTAAATTGATCAGTTTTTGACAGCTTAGATTTAGATTGAGACTTCCATCTCTGCGTTAACTTTCTTCTCCACATTCGATTATGTATTTTCCGGCGACAATATGTTGTTGTTAAGCAACATTAATCCAATATATATGGCGCTCCAACAACAATGTGTCCATCCTCTATTCAAGATCATTCTTTTCTATGACTAATTCACATTGTTTTCTAACTTATAGATGAAATTTTATATATTTATTCTGAATTTCATATAAAATTGTTATTAACAGCATAAAGTGGAATCAAATTAAGTTGAATGGTGGGATCAAATGAAGTTGAATGGTGGGGCTGAGCAGCAAAAAAGAGTTATGGGGTTCAAAGCCAGGAAGCAGTTGTGCTGCCATCTCACCGCAGCCCCAAAAGAATCAATAGACCACCGTGAACGATTCTGATGACATGGAATGGTGTTGCTCGGTCCATCAATCCCCCGATCATGTAAGCCACATTCCCCTTAAACTATTATATTCTTTTCAATTTTCAACATTTTATATCAGATATCACAACACTTATATTGCTCTATGAATAGAGTAATTATATTTAACATATGAAATTATAGACCATGAATATTTTTGCTTCAATATTAATTGTGTCTTGGCCTTTGTTTCAATTTGCTCCATCCAATTTTTATTATTTTTGCAAGCTTTTCTTTATACGTTTAATCTTTCATCTCTAGCAGACAATGTCTATCATGAATATTCAAAACCAAAAAATGTTTGTTGCAGAGTTTTTGAGAGTTGTTTTTTGTGTGCCCCCTATCCTGTGTGTTTTTTGTCAATTTGCTTCTGGTTTGTAAGGTAGCAGGTTTGTTACTTACAAGGATGTCCAATTTTGAATTGTGCTGCATTATTCATTTAGGGGCTGAGAAGAGACTGCTATTGGAGTTAACATACATGTGCACAAACTTTAATTGGAATAACTACATCTTATGCAAGAGGAACTTCCACTTGGATTGAGCATTAAAGGTTGTTTACCTCAGGATTTTAAGTAGATATTTGACTACATTCTCTCTGAGCAAACAATGGCTACATGTCTCACATTTAAATGGTTTTTGGCTATTGTTTAATAGAGATTCTATAAATTAACTAAAACTTGAAATTAACTTGATAATTTTTGTGTTTCTTCCTTTGTTTGAATTGATTGAAATTGAAAAGTAATTATTGTTATTGATTTTCTTTGAATGGATCAGGGATTCCGTGGACTGAGGAAGAGCACAAGATATTTTTGGTTGGATTGGAGAAAGTGGGAAAAGGTGATTGGAGAGGAATCTCAAGGAACTATGTGAAAACAAGAACGCCTACGCATGTTGCAAGTCATGCTCAGAAGTACTTTCTCCGCCGAAGTAATCTCAATCGCCGTCGCCGTAGATCCAGTCTCTTTGATATCACCACCGACACGGTAATTTTTTCGGCAATCTCTTAATAGAAACAATAAAACACTTTTTTTGCCTAAATTTGTATTCAATTAGTTACTAATCAATAAAGTAGTATTATGGTATTGCAAAAATGATATTTAATTTTCTCTGTTATTTTTTTGGTTTTCTAATTTTGATTCAATCAAGTTCAATGCTATTAAGACTTTTGCCATTAAGGAATTTGAACTATTGTAAAGGAAAAAAAAAACATAGTAGAAGTGATTCATTTGTTTAAATGGTTCATTATGTTAGTCCTTTAGGTTTATAATACAAAATTGTGCCTAATGAAAGTCCCTAGCTACATTGAATTTGTAAGTTGAATTCATTTGTTAAGTCATTCATTTTTAAATGGTTCTTTCAATTGAGAACTCCCACTTTACCGTAAGTTGAATTTGTAGCTTTTCTCGCTTTACAGTAAGTTGAGTTTGTACCTTTTACTACTGTTGGTTCGTATATATTATTAGTGCTGTTATTTCTCATGGTATCAATAATCTTAACATAGATCACAAAAAAATGTGAAACTAAGTAAAGCCTTGAATCATTTGGTGTACTGCTTTAATTCCATTAATGACATGTAGCATGGATTATGTATACTTTGAACGAAGAGATTATTCACTATTTAAAGAATGAAGATCCTGCAAACTTGGTTGGATTTGACATCCTTATGCACCAAATCGTACCTTTGATAGCTCATTAGTACATATTGTTGGCTTTCTTATTTGAATTGTATTCATGGCATCCTTCGCACACTTTTGATAACAGTCCAAACATTATTTCTTTCTGATTTTGTTTTCAAAGCATTGATATTCTTAAAGTATTTATTTGCTGTTATTCATTTAATAGTTTATTTGACTTCAAATCTAGCTGCATGGTTGGGACTTATGATCTCAAAGCATGTACGAGTTTTCTTACTATTCTACTGCTGGATTTTTGTTGAAGAACATTGGTGATTATAGCATTGCAATTTGTCTGAGAACTAAGAATTTCTGTTTAGAAAGCTATTTGTGGTTGTGCTCTTTTGATCTATTCTTTAGACACCTTATGTTTAATTTAGAGTATTTCTTATAATATGTATGGTTTTTTTAATTGCAGGATTGCATGAAAAAAATGTTTAACAGCCCGCAAGTTGTGTTGGTATGGACAGAAATAACCAACAGTGATTTAAAAACACTAGAATATATCTTATAAGATTATAAGGTTTATGTTTGTTCTCTGCATGCATTTCAAGAGTTTACTCGGCAAGCGTTGATATATATCTTATAATATTTGATGTATCTGGACATCTCTCTGAGTAATAAAAGTTGATGTATTTGGTACACATTTTGAAGCGAATACATGAACTTTCTTTGACTTATTTTTGTTAATATTTTGTTAAGTGTATGATTTACATGATCTGAACAACTTTGTGTTTATGTTAGGTATCTGCAATTCCAGTGGAGGCAGAACAGGTCAAGAATCAAGATAGGCCTTGA
Protein sequence

>MS.gene54107.t1

MMHNLFRDQSEEEEELESEYEYESNPRLNSDEGERRVGQEGEGQGVFEEEVESEGGREQLAVMVFAVVIACSGSNLNQGNRGIIAETPNQAERIIADIRISLFKFSSKRMLPCNIIFRTFDPSERSLKKLEFLVKQHGRGRIFGGNWNSAKLELFEWIPWTEEEHKIFLVGLEKVGKGDWRGISRNYVKTRTPTHVASHAQKYFLRRSNLNRRRRRSSLFDITTDTDCMKKMFNSPQVVLVSAIPVEAEQVKNQDRP