Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54291.t1 | XP_013462567.1 | 92.6 | 243 | 18 | 0 | 1 | 243 | 1 | 243 | 1.40E-121 | 445.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54291.t1 | Q9FJK3 | 42.9 | 163 | 92 | 1 | 1 | 163 | 1 | 162 | 8.3e-30 | 132.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54291.t1 | G7ZXK2 | 92.6 | 243 | 18 | 0 | 1 | 243 | 1 | 243 | 1.0e-121 | 445.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene54291.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54291.t1 | MTR_2g016210 | 92.593 | 243 | 18 | 0 | 1 | 243 | 1 | 243 | 5.11e-169 | 466 |
MS.gene54291.t1 | MTR_3g031100 | 43.290 | 231 | 122 | 3 | 1 | 227 | 1 | 226 | 1.27e-58 | 186 |
MS.gene54291.t1 | MTR_4g063790 | 46.707 | 167 | 89 | 0 | 1 | 167 | 1 | 167 | 6.53e-49 | 159 |
MS.gene54291.t1 | MTR_3g466980 | 46.927 | 179 | 92 | 2 | 1 | 177 | 1 | 178 | 3.05e-48 | 159 |
MS.gene54291.t1 | MTR_3g467080 | 44.872 | 156 | 86 | 0 | 5 | 160 | 5 | 160 | 1.57e-42 | 142 |
MS.gene54291.t1 | MTR_3g031240 | 44.172 | 163 | 91 | 0 | 1 | 163 | 1 | 163 | 6.21e-42 | 141 |
MS.gene54291.t1 | MTR_8g036130 | 45.000 | 160 | 86 | 1 | 1 | 158 | 1 | 160 | 8.42e-39 | 135 |
MS.gene54291.t1 | MTR_3g465410 | 45.390 | 141 | 77 | 0 | 29 | 169 | 1 | 141 | 4.33e-38 | 130 |
MS.gene54291.t1 | MTR_5g075380 | 37.975 | 158 | 97 | 1 | 1 | 158 | 1 | 157 | 4.98e-38 | 130 |
MS.gene54291.t1 | MTR_4g032620 | 37.500 | 200 | 111 | 2 | 1 | 200 | 1 | 186 | 1.07e-36 | 129 |
MS.gene54291.t1 | MTR_3g065100 | 46.497 | 157 | 83 | 1 | 1 | 157 | 1 | 156 | 3.66e-36 | 128 |
MS.gene54291.t1 | MTR_4g031910 | 42.949 | 156 | 89 | 0 | 1 | 156 | 1 | 156 | 2.08e-34 | 123 |
MS.gene54291.t1 | MTR_1g090697 | 39.623 | 159 | 92 | 3 | 1 | 158 | 1 | 156 | 1.37e-29 | 108 |
MS.gene54291.t1 | MTR_2g035580 | 42.405 | 158 | 86 | 2 | 1 | 156 | 1 | 155 | 1.66e-29 | 108 |
MS.gene54291.t1 | MTR_4g032290 | 41.358 | 162 | 95 | 0 | 1 | 162 | 1 | 162 | 2.89e-29 | 110 |
MS.gene54291.t1 | MTR_1g077390 | 38.365 | 159 | 96 | 2 | 1 | 159 | 1 | 157 | 4.36e-29 | 107 |
MS.gene54291.t1 | MTR_3g466830 | 40.136 | 147 | 87 | 1 | 4 | 150 | 3 | 148 | 8.85e-29 | 107 |
MS.gene54291.t1 | MTR_4g032260 | 41.026 | 156 | 92 | 0 | 1 | 156 | 1 | 156 | 1.01e-28 | 106 |
MS.gene54291.t1 | MTR_5g047580 | 36.306 | 157 | 98 | 2 | 1 | 157 | 1 | 155 | 4.50e-28 | 105 |
MS.gene54291.t1 | MTR_1g090783 | 36.774 | 155 | 96 | 2 | 4 | 158 | 3 | 155 | 3.07e-26 | 100 |
MS.gene54291.t1 | MTR_2g035610 | 44.444 | 117 | 65 | 0 | 1 | 117 | 1 | 117 | 1.53e-25 | 97.4 |
MS.gene54291.t1 | MTR_1g077320 | 40.000 | 160 | 92 | 3 | 1 | 159 | 1 | 157 | 2.53e-25 | 97.8 |
MS.gene54291.t1 | MTR_1g090710 | 34.810 | 158 | 102 | 1 | 1 | 158 | 1 | 157 | 1.46e-24 | 95.9 |
MS.gene54291.t1 | MTR_7g011950 | 39.623 | 159 | 94 | 2 | 1 | 159 | 1 | 157 | 4.34e-24 | 94.7 |
MS.gene54291.t1 | MTR_3g466890 | 34.416 | 154 | 100 | 1 | 5 | 158 | 4 | 156 | 1.07e-23 | 93.6 |
MS.gene54291.t1 | MTR_4g028720 | 38.365 | 159 | 96 | 2 | 1 | 159 | 1 | 157 | 8.40e-23 | 91.3 |
MS.gene54291.t1 | MTR_1g084950 | 36.306 | 157 | 98 | 2 | 1 | 157 | 1 | 155 | 1.79e-21 | 87.8 |
MS.gene54291.t1 | MTR_4g028800 | 55.714 | 70 | 29 | 1 | 1 | 70 | 1 | 68 | 2.24e-21 | 85.1 |
MS.gene54291.t1 | MTR_3g093900 | 32.051 | 156 | 95 | 2 | 4 | 159 | 7 | 151 | 4.50e-21 | 92.0 |
MS.gene54291.t1 | MTR_1g077300 | 37.107 | 159 | 96 | 3 | 1 | 159 | 1 | 155 | 2.24e-20 | 84.7 |
MS.gene54291.t1 | MTR_4g019670 | 31.655 | 139 | 94 | 1 | 4 | 142 | 7 | 144 | 3.30e-18 | 83.6 |
MS.gene54291.t1 | MTR_7g106510 | 30.216 | 139 | 96 | 1 | 4 | 142 | 7 | 144 | 1.04e-17 | 82.0 |
MS.gene54291.t1 | MTR_3g466900 | 34.454 | 119 | 77 | 1 | 32 | 150 | 2 | 119 | 8.33e-16 | 72.0 |
MS.gene54291.t1 | MTR_3g466930 | 33.071 | 127 | 84 | 1 | 32 | 158 | 2 | 127 | 2.69e-15 | 70.9 |
MS.gene54291.t1 | MTR_4g045977 | 25.641 | 156 | 106 | 2 | 1 | 154 | 1 | 148 | 1.08e-13 | 70.1 |
MS.gene54291.t1 | MTR_1g114730 | 33.333 | 108 | 64 | 4 | 3 | 103 | 2 | 108 | 5.05e-13 | 67.8 |
MS.gene54291.t1 | MTR_4g107170 | 22.222 | 216 | 150 | 4 | 3 | 208 | 2 | 209 | 4.36e-12 | 64.3 |
MS.gene54291.t1 | MTR_6g018920 | 31.481 | 108 | 66 | 4 | 3 | 103 | 2 | 108 | 9.26e-12 | 64.3 |
MS.gene54291.t1 | MTR_6g005440 | 26.415 | 159 | 101 | 5 | 3 | 154 | 2 | 151 | 6.18e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54291.t1 | AT5G48670 | 44.516 | 155 | 85 | 1 | 1 | 155 | 1 | 154 | 2.75e-32 | 120 |
MS.gene54291.t1 | AT3G05860 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 8.96e-31 | 114 |
MS.gene54291.t1 | AT3G05860 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 1.38e-30 | 113 |
MS.gene54291.t1 | AT3G05860 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 1.81e-30 | 114 |
MS.gene54291.t1 | AT1G65300 | 35.714 | 154 | 98 | 1 | 4 | 157 | 3 | 155 | 4.37e-29 | 110 |
MS.gene54291.t1 | AT5G27960 | 35.669 | 157 | 96 | 2 | 4 | 158 | 2 | 155 | 9.85e-28 | 108 |
MS.gene54291.t1 | AT5G26650 | 36.129 | 155 | 98 | 1 | 4 | 158 | 2 | 155 | 1.63e-27 | 108 |
MS.gene54291.t1 | AT1G65330 | 34.416 | 154 | 100 | 1 | 5 | 158 | 4 | 156 | 5.93e-25 | 100 |
MS.gene54291.t1 | AT2G28700 | 34.000 | 150 | 98 | 1 | 1 | 150 | 1 | 149 | 1.54e-22 | 94.4 |
MS.gene54291.t1 | AT1G31640 | 33.775 | 151 | 94 | 3 | 5 | 153 | 4 | 150 | 6.66e-22 | 94.0 |
MS.gene54291.t1 | AT1G31630 | 31.973 | 147 | 98 | 2 | 5 | 151 | 4 | 148 | 6.80e-22 | 92.8 |
MS.gene54291.t1 | AT1G22590 | 30.380 | 158 | 106 | 1 | 1 | 158 | 1 | 154 | 4.64e-20 | 84.3 |
MS.gene54291.t1 | AT5G27810 | 40.860 | 93 | 55 | 0 | 29 | 121 | 1 | 93 | 1.37e-19 | 81.6 |
MS.gene54291.t1 | AT2G40210 | 35.915 | 142 | 89 | 1 | 1 | 142 | 1 | 140 | 3.50e-18 | 82.8 |
MS.gene54291.t1 | AT5G26580 | 30.625 | 160 | 92 | 3 | 1 | 158 | 1 | 143 | 1.81e-17 | 80.5 |
MS.gene54291.t1 | AT5G06500 | 29.936 | 157 | 106 | 2 | 1 | 156 | 1 | 154 | 2.74e-16 | 75.9 |
MS.gene54291.t1 | AT5G26630 | 32.911 | 158 | 105 | 1 | 1 | 158 | 1 | 157 | 1.06e-15 | 73.9 |
MS.gene54291.t1 | AT5G55690 | 45.455 | 77 | 34 | 3 | 3 | 71 | 2 | 78 | 3.97e-15 | 73.2 |
MS.gene54291.t1 | AT5G55690 | 45.455 | 77 | 34 | 3 | 3 | 71 | 2 | 78 | 3.97e-15 | 73.2 |
MS.gene54291.t1 | AT5G58890 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 8.76e-14 | 69.7 |
Find 64 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAATACTTTAGTAATAAAT+TGG | 0.225188 | 2.3:+69266334 | None:intergenic |
AATAGGTAATGAGGGTAATA+AGG | 0.250530 | 2.3:-69266154 | MS.gene54291:CDS |
AGGAGATATGCAAGCTAATA+TGG | 0.251220 | 2.3:-69266106 | MS.gene54291:CDS |
CTTCAGATTGTTGTCTATAA+AGG | 0.253823 | 2.3:+69266254 | None:intergenic |
TTGGATAGCAACATGAATTA+TGG | 0.300972 | 2.3:-69266060 | MS.gene54291:CDS |
TTGATCATCGTTGTCATGAC+TGG | 0.312663 | 2.3:-69267031 | None:intergenic |
GAAGCATGCGCAATAATATT+TGG | 0.313391 | 2.3:-69266552 | MS.gene54291:CDS |
GATAACACATTTCTTGTTGC+AGG | 0.342611 | 2.3:+69266492 | None:intergenic |
GGTAATAAGGGTGATGCATC+AGG | 0.346713 | 2.3:-69266141 | MS.gene54291:CDS |
TGCCTTCCTGCTCGATGAAT+TGG | 0.351091 | 2.3:+69266982 | None:intergenic |
ATACGGACATAAATGGTCTT+TGG | 0.354339 | 2.3:-69265975 | MS.gene54291:CDS |
TTCAATAGGTTTGCTAAAGA+AGG | 0.384024 | 2.3:-69266604 | MS.gene54291:intron |
GCAGAAGATATGAATGGAAT+AGG | 0.400967 | 2.3:-69266171 | MS.gene54291:CDS |
AGCATTTCATGATGTTAATA+CGG | 0.402387 | 2.3:-69265992 | MS.gene54291:CDS |
ATTGTTGTTGAAGAAACAAA+TGG | 0.421492 | 2.3:-69266382 | MS.gene54291:CDS |
ACAATCTGAAGGAAATTGAT+TGG | 0.429161 | 2.3:-69266242 | MS.gene54291:CDS |
ATTGAGATTTCGCTATACTT+TGG | 0.431628 | 2.3:+69266403 | None:intergenic |
GATGTTAATACGGACATAAA+TGG | 0.434993 | 2.3:-69265982 | MS.gene54291:CDS |
GGACCTTGTGGCCAAACCTC+TGG | 0.435290 | 2.3:+69266513 | None:intergenic |
TCTCAAGAGGAAGCTGGAAA+TGG | 0.439401 | 2.3:-69266195 | MS.gene54291:CDS |
ACAATGCTCAACCAGAGGTT+TGG | 0.442796 | 2.3:-69266524 | MS.gene54291:CDS |
TTCAGGCAAGTGTAGGAACT+TGG | 0.447788 | 2.3:+69266470 | None:intergenic |
CTCATTCACGTTCACATCCT+CGG | 0.451043 | 2.3:+69266293 | None:intergenic |
ATAGGTAATGAGGGTAATAA+GGG | 0.483783 | 2.3:-69266153 | MS.gene54291:CDS |
ATTACTAAAGTATTTAGTAC+TGG | 0.490777 | 2.3:-69266327 | MS.gene54291:CDS |
TGGTGCTGATGTCCAAGGTT+TGG | 0.501853 | 2.3:-69266079 | MS.gene54291:CDS |
TGTTGTCTATAAAGGCCATC+AGG | 0.507830 | 2.3:+69266262 | None:intergenic |
TATGAATGGAATAGGTAATG+AGG | 0.512938 | 2.3:-69266163 | MS.gene54291:CDS |
TGATTGGAGGTTGCAATCGA+TGG | 0.516726 | 2.3:-69266226 | MS.gene54291:CDS |
ATTCAATCTCAAGAGGAAGC+TGG | 0.518424 | 2.3:-69266201 | MS.gene54291:CDS |
CAACCAGAGGTTTGGCCACA+AGG | 0.519368 | 2.3:-69266516 | MS.gene54291:CDS |
TGATCATCGTTGTCATGACT+GGG | 0.524662 | 2.3:-69267030 | None:intergenic |
TCATGTTGCTATCCAAACCT+TGG | 0.527597 | 2.3:+69266067 | None:intergenic |
ATGAATGGAATAGGTAATGA+GGG | 0.529671 | 2.3:-69266162 | MS.gene54291:CDS |
AATGGAGCAGAAGATATGAA+TGG | 0.530854 | 2.3:-69266177 | MS.gene54291:CDS |
TCATTCACGTTCACATCCTC+GGG | 0.531270 | 2.3:+69266294 | None:intergenic |
GGAGATATGCAAGCTAATAT+GGG | 0.531775 | 2.3:-69266105 | MS.gene54291:CDS |
CGTTGTCATGACTGGGAGGA+AGG | 0.534161 | 2.3:-69267023 | None:intergenic |
GTTCGATTTCAGGCAAGTGT+AGG | 0.534412 | 2.3:+69266463 | None:intergenic |
TTTCTTGTTGCAGGACCTTG+TGG | 0.537057 | 2.3:+69266501 | None:intergenic |
ACATAGCCAATTCATCGAGC+AGG | 0.541522 | 2.3:-69266988 | MS.gene54291:CDS |
ATCTGAAGGAAATTGATTGG+AGG | 0.552242 | 2.3:-69266239 | MS.gene54291:CDS |
TAAGGGTGATGCATCAGGGC+TGG | 0.558559 | 2.3:-69266136 | MS.gene54291:CDS |
TGATTATCAAGATCCACCTT+GGG | 0.562050 | 2.3:-69266028 | MS.gene54291:CDS |
GTGATTATCAAGATCCACCT+TGG | 0.566592 | 2.3:-69266029 | MS.gene54291:CDS |
ATGCAAGCTAATATGGGCCA+TGG | 0.597067 | 2.3:-69266099 | MS.gene54291:CDS |
GATGGAAATTCAATCTCAAG+AGG | 0.602763 | 2.3:-69266208 | MS.gene54291:CDS |
TAGCAACATGAATTATGGCA+TGG | 0.605759 | 2.3:-69266055 | MS.gene54291:CDS |
CTTTATAGACAACAATCTGA+AGG | 0.613746 | 2.3:-69266253 | MS.gene54291:CDS |
GCATCAGGGCTGGTGAATGT+AGG | 0.618345 | 2.3:-69266126 | MS.gene54291:CDS |
GGCCATGGTGCTGATGTCCA+AGG | 0.619615 | 2.3:-69266084 | MS.gene54291:CDS |
ATGAGATCAGCACTCTATGT+GGG | 0.619663 | 2.3:-69266578 | MS.gene54291:CDS |
AATGAGATCAGCACTCTATG+TGG | 0.635571 | 2.3:-69266579 | MS.gene54291:CDS |
GAATGAGCTGAATGACCTGA+TGG | 0.641130 | 2.3:-69266277 | MS.gene54291:CDS |
AACATCATGAAATGCTAACA+TGG | 0.649787 | 2.3:+69265999 | None:intergenic |
GTAATAAGGGTGATGCATCA+GGG | 0.652229 | 2.3:-69266140 | MS.gene54291:CDS |
GTTGTTGAAGAAACAAATGG+AGG | 0.654091 | 2.3:-69266379 | MS.gene54291:CDS |
AGCCAATTCATCGAGCAGGA+AGG | 0.659357 | 2.3:-69266984 | MS.gene54291:CDS |
GCTAACATGGAGAAGTCCCA+AGG | 0.667501 | 2.3:+69266012 | None:intergenic |
TACTGGACAATATCGTCCCG+AGG | 0.674998 | 2.3:-69266310 | MS.gene54291:CDS |
AACCTTGGACATCAGCACCA+TGG | 0.676746 | 2.3:+69266082 | None:intergenic |
TGAAAACAATGCTCAACCAG+AGG | 0.685492 | 2.3:-69266529 | MS.gene54291:CDS |
AACATGGAGAAGTCCCAAGG+TGG | 0.697499 | 2.3:+69266015 | None:intergenic |
TCATCGTTGTCATGACTGGG+AGG | 0.723014 | 2.3:-69267027 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAATACTTTAGTAATAAAT+TGG | + | chr2.3:69266651-69266670 | None:intergenic | 10.0% |
!!! | TTCACTTTATTTTATTTTTT+TGG | - | chr2.3:69266285-69266304 | MS.gene54291:CDS | 10.0% |
!! | TAATGATATGAAAATGATTT+AGG | - | chr2.3:69266127-69266146 | MS.gene54291:CDS | 15.0% |
!! | TATCATTAATCATTATCTAA+TGG | + | chr2.3:69266115-69266134 | None:intergenic | 15.0% |
!!! | AACTATATATGTTTTTCAAT+AGG | - | chr2.3:69266364-69266383 | MS.gene54291:CDS | 15.0% |
!! | ATTGAATTTAAACAAACTCA+AGG | - | chr2.3:69266212-69266231 | MS.gene54291:CDS | 20.0% |
!! | TGAAAAACATATATAGTTAG+AGG | + | chr2.3:69266362-69266381 | None:intergenic | 20.0% |
!! | TTGAATTTAAACAAACTCAA+GGG | - | chr2.3:69266213-69266232 | MS.gene54291:CDS | 20.0% |
!!! | ATTACTAAAGTATTTAGTAC+TGG | - | chr2.3:69266655-69266674 | MS.gene54291:intron | 20.0% |
!!! | TAACATCTATATAATTTGCA+TGG | + | chr2.3:69266092-69266111 | None:intergenic | 20.0% |
! | AGCATTTCATGATGTTAATA+CGG | - | chr2.3:69266990-69267009 | MS.gene54291:CDS | 25.0% |
!! | ATTGTTGTTGAAGAAACAAA+TGG | - | chr2.3:69266600-69266619 | MS.gene54291:intron | 25.0% |
!! | TACACGCTTTATTGAAAATA+AGG | + | chr2.3:69266065-69266084 | None:intergenic | 25.0% |
AACATCATGAAATGCTAACA+TGG | + | chr2.3:69266986-69267005 | None:intergenic | 30.0% | |
AATAGGTAATGAGGGTAATA+AGG | - | chr2.3:69266828-69266847 | MS.gene54291:intron | 30.0% | |
AATCGAACGAAGCAAAAATA+TGG | - | chr2.3:69266534-69266553 | MS.gene54291:CDS | 30.0% | |
AATTCAATCTCTTACTAGTG+AGG | + | chr2.3:69266200-69266219 | None:intergenic | 30.0% | |
ACAATCTGAAGGAAATTGAT+TGG | - | chr2.3:69266740-69266759 | MS.gene54291:intron | 30.0% | |
ATAGGTAATGAGGGTAATAA+GGG | - | chr2.3:69266829-69266848 | MS.gene54291:intron | 30.0% | |
ATGAATGGAATAGGTAATGA+GGG | - | chr2.3:69266820-69266839 | MS.gene54291:intron | 30.0% | |
ATTGAGATTTCGCTATACTT+TGG | + | chr2.3:69266582-69266601 | None:intergenic | 30.0% | |
CTTCAGATTGTTGTCTATAA+AGG | + | chr2.3:69266731-69266750 | None:intergenic | 30.0% | |
CTTTATAGACAACAATCTGA+AGG | - | chr2.3:69266729-69266748 | MS.gene54291:intron | 30.0% | |
GATGTTAATACGGACATAAA+TGG | - | chr2.3:69267000-69267019 | MS.gene54291:CDS | 30.0% | |
TATGAATGGAATAGGTAATG+AGG | - | chr2.3:69266819-69266838 | MS.gene54291:intron | 30.0% | |
TTGGATAGCAACATGAATTA+TGG | - | chr2.3:69266922-69266941 | MS.gene54291:intron | 30.0% | |
!! | TTCAATAGGTTTGCTAAAGA+AGG | - | chr2.3:69266378-69266397 | MS.gene54291:CDS | 30.0% |
AATGGAGCAGAAGATATGAA+TGG | - | chr2.3:69266805-69266824 | MS.gene54291:intron | 35.0% | |
AGCTACAAAAAAAGGAAAGC+TGG | - | chr2.3:69266023-69266042 | MS.gene54291:CDS | 35.0% | |
AGGAGATATGCAAGCTAATA+TGG | - | chr2.3:69266876-69266895 | MS.gene54291:intron | 35.0% | |
ATACGGACATAAATGGTCTT+TGG | - | chr2.3:69267007-69267026 | MS.gene54291:CDS | 35.0% | |
ATCTGAAGGAAATTGATTGG+AGG | - | chr2.3:69266743-69266762 | MS.gene54291:intron | 35.0% | |
GAAGCATGCGCAATAATATT+TGG | - | chr2.3:69266430-69266449 | MS.gene54291:CDS | 35.0% | |
GATAACACATTTCTTGTTGC+AGG | + | chr2.3:69266493-69266512 | None:intergenic | 35.0% | |
GATGGAAATTCAATCTCAAG+AGG | - | chr2.3:69266774-69266793 | MS.gene54291:intron | 35.0% | |
GCAGAAGATATGAATGGAAT+AGG | - | chr2.3:69266811-69266830 | MS.gene54291:intron | 35.0% | |
GGAGATATGCAAGCTAATAT+GGG | - | chr2.3:69266877-69266896 | MS.gene54291:intron | 35.0% | |
GTTGTTGAAGAAACAAATGG+AGG | - | chr2.3:69266603-69266622 | MS.gene54291:intron | 35.0% | |
TAGCAACATGAATTATGGCA+TGG | - | chr2.3:69266927-69266946 | MS.gene54291:intron | 35.0% | |
TGATTATCAAGATCCACCTT+GGG | - | chr2.3:69266954-69266973 | MS.gene54291:intron | 35.0% | |
! | TTTTTGCTTCGTTCGATTTC+AGG | + | chr2.3:69266532-69266551 | None:intergenic | 35.0% |
AATGAGATCAGCACTCTATG+TGG | - | chr2.3:69266403-69266422 | MS.gene54291:CDS | 40.0% | |
ATGAGATCAGCACTCTATGT+GGG | - | chr2.3:69266404-69266423 | MS.gene54291:CDS | 40.0% | |
ATTCAATCTCAAGAGGAAGC+TGG | - | chr2.3:69266781-69266800 | MS.gene54291:intron | 40.0% | |
CGAACGAAGCAAAAATATGG+TGG | - | chr2.3:69266537-69266556 | MS.gene54291:CDS | 40.0% | |
GGAAGGCAAGCTACAAAAAA+AGG | - | chr2.3:69266015-69266034 | MS.gene54291:CDS | 40.0% | |
GTAATAAGGGTGATGCATCA+GGG | - | chr2.3:69266842-69266861 | MS.gene54291:intron | 40.0% | |
GTGATTATCAAGATCCACCT+TGG | - | chr2.3:69266953-69266972 | MS.gene54291:intron | 40.0% | |
TCATGTTGCTATCCAAACCT+TGG | + | chr2.3:69266918-69266937 | None:intergenic | 40.0% | |
TGAAAACAATGCTCAACCAG+AGG | - | chr2.3:69266453-69266472 | MS.gene54291:CDS | 40.0% | |
TGTTGTCTATAAAGGCCATC+AGG | + | chr2.3:69266723-69266742 | None:intergenic | 40.0% | |
ACAATGCTCAACCAGAGGTT+TGG | - | chr2.3:69266458-69266477 | MS.gene54291:CDS | 45.0% | |
ACATAGCCAATTCATCGAGC+AGG | - | chr2.3:69265994-69266013 | MS.gene54291:CDS | 45.0% | |
ATGCAAGCTAATATGGGCCA+TGG | - | chr2.3:69266883-69266902 | MS.gene54291:intron | 45.0% | |
CTCATTCACGTTCACATCCT+CGG | + | chr2.3:69266692-69266711 | None:intergenic | 45.0% | |
GAATGAGCTGAATGACCTGA+TGG | - | chr2.3:69266705-69266724 | MS.gene54291:intron | 45.0% | |
GGTAATAAGGGTGATGCATC+AGG | - | chr2.3:69266841-69266860 | MS.gene54291:intron | 45.0% | |
GTTCGATTTCAGGCAAGTGT+AGG | + | chr2.3:69266522-69266541 | None:intergenic | 45.0% | |
TCATTCACGTTCACATCCTC+GGG | + | chr2.3:69266691-69266710 | None:intergenic | 45.0% | |
TCTCAAGAGGAAGCTGGAAA+TGG | - | chr2.3:69266787-69266806 | MS.gene54291:intron | 45.0% | |
TGATTGGAGGTTGCAATCGA+TGG | - | chr2.3:69266756-69266775 | MS.gene54291:intron | 45.0% | |
TTCAGGCAAGTGTAGGAACT+TGG | + | chr2.3:69266515-69266534 | None:intergenic | 45.0% | |
TTTCTTGTTGCAGGACCTTG+TGG | + | chr2.3:69266484-69266503 | None:intergenic | 45.0% | |
AACATGGAGAAGTCCCAAGG+TGG | + | chr2.3:69266970-69266989 | None:intergenic | 50.0% | |
AACCTTGGACATCAGCACCA+TGG | + | chr2.3:69266903-69266922 | None:intergenic | 50.0% | |
AGCCAATTCATCGAGCAGGA+AGG | - | chr2.3:69265998-69266017 | MS.gene54291:CDS | 50.0% | |
GCTAACATGGAGAAGTCCCA+AGG | + | chr2.3:69266973-69266992 | None:intergenic | 50.0% | |
TACTGGACAATATCGTCCCG+AGG | - | chr2.3:69266672-69266691 | MS.gene54291:intron | 50.0% | |
TGCCTTCCTGCTCGATGAAT+TGG | + | chr2.3:69266003-69266022 | None:intergenic | 50.0% | |
!! | TGGTGCTGATGTCCAAGGTT+TGG | - | chr2.3:69266903-69266922 | MS.gene54291:intron | 50.0% |
CAACCAGAGGTTTGGCCACA+AGG | - | chr2.3:69266466-69266485 | MS.gene54291:CDS | 55.0% | |
TAAGGGTGATGCATCAGGGC+TGG | - | chr2.3:69266846-69266865 | MS.gene54291:intron | 55.0% | |
! | GCATCAGGGCTGGTGAATGT+AGG | - | chr2.3:69266856-69266875 | MS.gene54291:intron | 55.0% |
GGACCTTGTGGCCAAACCTC+TGG | + | chr2.3:69266472-69266491 | None:intergenic | 60.0% | |
!! | GGCCATGGTGCTGATGTCCA+AGG | - | chr2.3:69266898-69266917 | MS.gene54291:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 69265966 | 69267038 | 69265966 | ID=MS.gene54291 |
chr2.3 | mRNA | 69265966 | 69267038 | 69265966 | ID=MS.gene54291.t1;Parent=MS.gene54291 |
chr2.3 | exon | 69266960 | 69267038 | 69266960 | ID=MS.gene54291.t1.exon1;Parent=MS.gene54291.t1 |
chr2.3 | CDS | 69266960 | 69267038 | 69266960 | ID=cds.MS.gene54291.t1;Parent=MS.gene54291.t1 |
chr2.3 | exon | 69265966 | 69266618 | 69265966 | ID=MS.gene54291.t1.exon2;Parent=MS.gene54291.t1 |
chr2.3 | CDS | 69265966 | 69266618 | 69265966 | ID=cds.MS.gene54291.t1;Parent=MS.gene54291.t1 |
Gene Sequence |
Protein sequence |