Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54374.t1 | XP_003621009.1 | 98.9 | 437 | 5 | 0 | 1 | 437 | 1 | 437 | 1.70E-226 | 795 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54374.t1 | Q9MAT6 | 53.1 | 377 | 146 | 5 | 1 | 358 | 1 | 365 | 4.9e-89 | 329.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54374.t1 | G7KWP7 | 98.9 | 437 | 5 | 0 | 1 | 437 | 1 | 437 | 1.2e-226 | 795.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene54374.t1 | TR | ARID |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54374.t1 | MTR_7g005970 | 98.856 | 437 | 5 | 0 | 1 | 437 | 1 | 437 | 0.0 | 902 |
MS.gene54374.t1 | MTR_1g116180 | 61.440 | 389 | 131 | 8 | 1 | 377 | 1 | 382 | 1.92e-165 | 472 |
MS.gene54374.t1 | MTR_1g116180 | 64.127 | 315 | 97 | 7 | 1 | 303 | 1 | 311 | 1.77e-141 | 407 |
MS.gene54374.t1 | MTR_3g114920 | 45.062 | 324 | 151 | 9 | 25 | 337 | 20 | 327 | 5.57e-83 | 258 |
MS.gene54374.t1 | MTR_3g009890 | 39.073 | 302 | 121 | 6 | 22 | 323 | 26 | 264 | 3.41e-56 | 187 |
MS.gene54374.t1 | MTR_5g080030 | 24.055 | 291 | 158 | 7 | 67 | 353 | 70 | 301 | 9.12e-14 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54374.t1 | AT1G04880 | 54.813 | 374 | 140 | 6 | 1 | 356 | 1 | 363 | 2.35e-119 | 355 |
MS.gene54374.t1 | AT1G76110 | 42.812 | 313 | 156 | 3 | 25 | 327 | 27 | 326 | 8.14e-82 | 256 |
MS.gene54374.t1 | AT3G13350 | 47.157 | 299 | 126 | 8 | 30 | 323 | 34 | 305 | 7.02e-79 | 247 |
MS.gene54374.t1 | AT1G55650 | 39.867 | 301 | 140 | 6 | 32 | 331 | 30 | 290 | 3.69e-64 | 210 |
Find 90 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTCTGCAGTGTCTTCTTC+TGG | 0.231989 | 7.4:-93699500 | MS.gene54374:intron |
GGAGAAGCTTCATGCTTCTA+TGG | 0.249345 | 7.4:-93701888 | MS.gene54374:CDS |
GCCACTGCAACAACGGTTTC+TGG | 0.256389 | 7.4:-93698418 | MS.gene54374:CDS |
GGAAGAAGTCAGAAATAAAA+AGG | 0.265856 | 7.4:-93699304 | MS.gene54374:CDS |
TTATCAAGAAAAGGCTATTA+AGG | 0.267196 | 7.4:-93698517 | MS.gene54374:CDS |
TAACCACTTCTGTTAGGTTT+TGG | 0.270511 | 7.4:+93699266 | None:intergenic |
TGTTTCAGGGTTCCCATTAT+TGG | 0.277531 | 7.4:-93701658 | MS.gene54374:intron |
CGGTGGACCCCTGCATCTTC+TGG | 0.281007 | 7.4:-93700463 | MS.gene54374:intron |
TCTTCTGGATCTTCACTTGT+TGG | 0.289352 | 7.4:-93699485 | MS.gene54374:CDS |
ATAGGAGCTACCACTTTCAT+AGG | 0.334690 | 7.4:+93701986 | None:intergenic |
TCACTTGTTGGAGTTATTGA+TGG | 0.342127 | 7.4:-93699473 | MS.gene54374:CDS |
TAATATCCTTGTCCATGGTT+TGG | 0.351606 | 7.4:+93699198 | None:intergenic |
AAGTCGACTGGATGTGTTCC+TGG | 0.356132 | 7.4:+93700284 | None:intergenic |
TCCTCCTCCGACGGCGGCGT+TGG | 0.371177 | 7.4:+93699324 | None:intergenic |
ACTCCTGAGGAGAGTAGTTC+TGG | 0.384663 | 7.4:-93698342 | MS.gene54374:CDS |
ATCAACATGGATGCTTCTTC+CGG | 0.386689 | 7.4:-93698294 | MS.gene54374:CDS |
CAATATTGCATCTGCTGCAT+TGG | 0.389249 | 7.4:-93699351 | MS.gene54374:CDS |
GTAGAATGATTGGTGAACTT+TGG | 0.397195 | 7.4:-93699175 | MS.gene54374:CDS |
AGATGCAGGGGTCCACCGTT+TGG | 0.409841 | 7.4:+93700468 | None:intergenic |
AAAGTAAGGATAACATGTTT+TGG | 0.411072 | 7.4:+93698136 | None:intergenic |
AAATTGTAACCACTTCTGTT+AGG | 0.413038 | 7.4:+93699260 | None:intergenic |
GAAGCATTGGTTGCTGTTGA+TGG | 0.418040 | 7.4:+93700556 | None:intergenic |
AGAAAGGTACCAAGCAGAAA+TGG | 0.423266 | 7.4:-93698490 | MS.gene54374:CDS |
GGAAGGAGATTCAGCTTTGG+TGG | 0.436527 | 7.4:-93698397 | MS.gene54374:CDS |
CAAGCTCTTTATGCTTACAT+TGG | 0.448632 | 7.4:-93701909 | MS.gene54374:CDS |
AAGGATATTAGTAGAATGAT+TGG | 0.451525 | 7.4:-93699185 | MS.gene54374:CDS |
CCAGTCGACTTTCAGAAGTC+AGG | 0.453438 | 7.4:-93700272 | MS.gene54374:CDS |
TCTGGAAGGAGATTCAGCTT+TGG | 0.456761 | 7.4:-93698400 | MS.gene54374:CDS |
CATTAAGGTTTATCAAGAAA+AGG | 0.456846 | 7.4:-93698526 | MS.gene54374:intron |
CAATGTAAGCATAAAGAGCT+TGG | 0.458599 | 7.4:+93701910 | None:intergenic |
ATTGATGGAAAGTTTGAAAG+TGG | 0.459678 | 7.4:-93699458 | MS.gene54374:CDS |
ACGCGGGGCCACTGCAACAA+CGG | 0.461362 | 7.4:-93698425 | MS.gene54374:CDS |
AGAATCCACTCTTGCTCCAC+CGG | 0.466317 | 7.4:+93698275 | None:intergenic |
AATATTGCATCTGCTGCATT+GGG | 0.466960 | 7.4:-93699350 | MS.gene54374:CDS |
TGATTCAGACAAGGCAACTA+AGG | 0.470199 | 7.4:-93698241 | MS.gene54374:CDS |
TCCAACGCCGCCGTCGGAGG+AGG | 0.470219 | 7.4:-93699325 | MS.gene54374:CDS |
AGCTTATGAAAGAGAGAAGA+TGG | 0.479121 | 7.4:-93700606 | MS.gene54374:CDS |
TATCTAGTTTCAGTTTCAGT+AGG | 0.493509 | 7.4:-93699434 | MS.gene54374:CDS |
TTGCAGTGGCCCCGCGTAGT+CGG | 0.498245 | 7.4:+93698431 | None:intergenic |
AATGTAAGCATAAAGAGCTT+GGG | 0.499008 | 7.4:+93701911 | None:intergenic |
TCTGAGCACAAAGGAAGCAT+TGG | 0.506402 | 7.4:+93700543 | None:intergenic |
TCCAGAAACCGTTGTTGCAG+TGG | 0.511982 | 7.4:+93698417 | None:intergenic |
ACTGGATGTGTTCCTGGAGA+AGG | 0.512094 | 7.4:+93700290 | None:intergenic |
TTCAGGGTTCCCATTATTGG+AGG | 0.517053 | 7.4:-93701655 | MS.gene54374:intron |
GAGAAGCTTCATGCTTCTAT+GGG | 0.518689 | 7.4:-93701887 | MS.gene54374:CDS |
TGGGCGTCCAACGCCGCCGT+CGG | 0.523765 | 7.4:-93699331 | MS.gene54374:CDS |
TTCATTGAAGTGACTTCTCG+TGG | 0.526953 | 7.4:-93701607 | MS.gene54374:CDS |
ATGCACAAACCAGAAGATGC+AGG | 0.528390 | 7.4:+93700454 | None:intergenic |
CAATGATTTCCCTATGAAAG+TGG | 0.531885 | 7.4:-93701996 | MS.gene54374:CDS |
AAATTCTCTACACTAAAGTA+AGG | 0.535953 | 7.4:+93698122 | None:intergenic |
GATAATCCTCCATTTCTGCT+TGG | 0.539679 | 7.4:+93698481 | None:intergenic |
TCTACTAATATCCTTGTCCA+TGG | 0.543804 | 7.4:+93699193 | None:intergenic |
CAGTCGACTTTCAGAAGTCA+GGG | 0.544869 | 7.4:-93700271 | MS.gene54374:CDS |
TCACCAGAACTACTCTCCTC+AGG | 0.547824 | 7.4:+93698339 | None:intergenic |
CCTGACTTCTGAAAGTCGAC+TGG | 0.548629 | 7.4:+93700272 | None:intergenic |
TGCACAAACCAGAAGATGCA+GGG | 0.551653 | 7.4:+93700455 | None:intergenic |
GCGTCCAACGCCGCCGTCGG+AGG | 0.562184 | 7.4:-93699328 | MS.gene54374:CDS |
TTGAAGTGACTTCTCGTGGA+GGG | 0.562395 | 7.4:-93701603 | MS.gene54374:CDS |
GAAGTTCTTAGCCATTGTGA+GGG | 0.564422 | 7.4:-93698207 | MS.gene54374:CDS |
TCAGGATATGAATGAGACAT+AGG | 0.570116 | 7.4:+93701968 | None:intergenic |
AGGCTATTAAGGATAAAGAA+AGG | 0.573816 | 7.4:-93698506 | MS.gene54374:CDS |
TTCTTCCGGTGGAGCAAGAG+TGG | 0.579438 | 7.4:-93698280 | MS.gene54374:CDS |
TGAAGTTCTTAGCCATTGTG+AGG | 0.580768 | 7.4:-93698208 | MS.gene54374:CDS |
CTGACTTCTTCCTCCTCCGA+CGG | 0.584477 | 7.4:+93699315 | None:intergenic |
TATTGAAGCTGGAACAGACA+TGG | 0.585157 | 7.4:+93700328 | None:intergenic |
AACATGGATGCTTCTTCCGG+TGG | 0.585693 | 7.4:-93698291 | MS.gene54374:CDS |
TCAGACAAGGCAACTAAGGA+GGG | 0.601091 | 7.4:-93698237 | MS.gene54374:CDS |
CATCCAAAACCTAACAGAAG+TGG | 0.603836 | 7.4:-93699269 | MS.gene54374:CDS |
TGCAAAATATGATGATGTTG+TGG | 0.605066 | 7.4:-93701939 | MS.gene54374:CDS |
ACTTCTTCCTCCTCCGACGG+CGG | 0.605098 | 7.4:+93699318 | None:intergenic |
TTCAGACAAGGCAACTAAGG+AGG | 0.611052 | 7.4:-93698238 | MS.gene54374:CDS |
AGCATTGTAACCGACTACGC+GGG | 0.614088 | 7.4:-93698441 | MS.gene54374:CDS |
AAAGCTACTAAACCAAACCA+TGG | 0.615278 | 7.4:-93699210 | MS.gene54374:CDS |
AATGCTTCTGAATTGCCTCA+AGG | 0.618648 | 7.4:-93700245 | MS.gene54374:intron |
CTGCAACAACGGTTTCTGGA+AGG | 0.622323 | 7.4:-93698414 | MS.gene54374:CDS |
TAGGAGCTACCACTTTCATA+GGG | 0.623246 | 7.4:+93701987 | None:intergenic |
AAGGTACCAAGCAGAAATGG+AGG | 0.630994 | 7.4:-93698487 | MS.gene54374:CDS |
TGTGAGGGAGAAGTGAATGC+TGG | 0.631243 | 7.4:-93698192 | MS.gene54374:CDS |
CGATTCTTGTCAGACTCCTG+AGG | 0.642082 | 7.4:-93698355 | MS.gene54374:CDS |
CATTCACTTCTCCCTCACAA+TGG | 0.653715 | 7.4:+93698196 | None:intergenic |
TTCTCGTGGAGGGATTGAGA+AGG | 0.661472 | 7.4:-93701593 | MS.gene54374:intron |
GCACAAACCAGAAGATGCAG+GGG | 0.670000 | 7.4:+93700456 | None:intergenic |
ACTAAACCAAACCATGGACA+AGG | 0.670033 | 7.4:-93699204 | MS.gene54374:CDS |
GTAGGTTCAGAGACACTCAA+AGG | 0.670192 | 7.4:-93699416 | MS.gene54374:CDS |
GCATTGTAACCGACTACGCG+GGG | 0.675516 | 7.4:-93698440 | MS.gene54374:CDS |
ATTGAAGTGACTTCTCGTGG+AGG | 0.683803 | 7.4:-93701604 | MS.gene54374:CDS |
GAGCATTGTAACCGACTACG+CGG | 0.688230 | 7.4:-93698442 | MS.gene54374:CDS |
AGTCGACTTTCAGAAGTCAG+GGG | 0.692181 | 7.4:-93700270 | MS.gene54374:CDS |
TGTTGCAGATGATATCAACA+TGG | 0.720650 | 7.4:-93698307 | MS.gene54374:CDS |
GAGGGAGAAGTGAATGCTGG+CGG | 0.753755 | 7.4:-93698189 | MS.gene54374:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATTAAAAACATCAAAT+AGG | + | chr7.4:93699008-93699027 | None:intergenic | 10.0% |
!!! | AGTATTACATATATAATTTT+TGG | - | chr7.4:93699489-93699508 | MS.gene54374:CDS | 10.0% |
!! | CAATTTCCTTAAATTATTAT+TGG | - | chr7.4:93701507-93701526 | MS.gene54374:intron | 15.0% |
!! | GAAAAGAAGAAAAAATAATT+TGG | - | chr7.4:93699978-93699997 | MS.gene54374:intron | 15.0% |
!! | TACATACCAATAATAATTTA+AGG | + | chr7.4:93701516-93701535 | None:intergenic | 15.0% |
!! | TTCACAAAAATTATTTAGAA+AGG | + | chr7.4:93698616-93698635 | None:intergenic | 15.0% |
!!! | AAAATGAACATGTTTTTATT+AGG | + | chr7.4:93698960-93698979 | None:intergenic | 15.0% |
!!! | AATAGCTTTATTTATTTTAC+AGG | + | chr7.4:93700581-93700600 | None:intergenic | 15.0% |
!!! | ATTTTTTCTTCTTTTCTTTT+TGG | + | chr7.4:93699974-93699993 | None:intergenic | 15.0% |
!!! | GATGTTTTTAATATTTAATC+AGG | - | chr7.4:93699012-93699031 | MS.gene54374:intron | 15.0% |
!!! | TTATTAATTTTAATGCTTTG+TGG | + | chr7.4:93700785-93700804 | None:intergenic | 15.0% |
!!! | TTGTAATTTTGATAAATTCA+TGG | + | chr7.4:93700257-93700276 | None:intergenic | 15.0% |
!!! | TTTGTAATTTTCAATACATT+TGG | - | chr7.4:93700417-93700436 | MS.gene54374:intron | 15.0% |
!! | AAATGAGATTGAAAAACTAA+AGG | + | chr7.4:93700558-93700577 | None:intergenic | 20.0% |
!! | AATAAATATGTTCATGAATG+AGG | - | chr7.4:93698733-93698752 | MS.gene54374:intron | 20.0% |
!! | ATAATATTAAGTACCTTTGT+CGG | - | chr7.4:93699329-93699348 | MS.gene54374:CDS | 20.0% |
!! | TCAATCTGGTTAAATATATT+TGG | - | chr7.4:93700509-93700528 | MS.gene54374:CDS | 20.0% |
!! | TCATCTATGAAAAAAAGTTT+AGG | + | chr7.4:93699420-93699439 | None:intergenic | 20.0% |
!! | TGACTAACAAAATATACATT+TGG | + | chr7.4:93700289-93700308 | None:intergenic | 20.0% |
!!! | AACATGTTCATTTTATTTCA+AGG | - | chr7.4:93698966-93698985 | MS.gene54374:intron | 20.0% |
!!! | ATAACTGAAATTTTGTTTCA+GGG | - | chr7.4:93698488-93698507 | MS.gene54374:CDS | 20.0% |
!!! | TAACAATTCAAATTGGTTTT+TGG | - | chr7.4:93701253-93701272 | MS.gene54374:intron | 20.0% |
!!! | TATAACTGAAATTTTGTTTC+AGG | - | chr7.4:93698487-93698506 | MS.gene54374:CDS | 20.0% |
!!! | TATTTTACAAAATTCGATGT+TGG | - | chr7.4:93699191-93699210 | MS.gene54374:CDS | 20.0% |
!!! | TTGGTTATTTTTTAACGATT+TGG | - | chr7.4:93701272-93701291 | MS.gene54374:intron | 20.0% |
!!! | TTTTAATGTTCAATATGACT+AGG | + | chr7.4:93700114-93700133 | None:intergenic | 20.0% |
! | AAGGATATTAGTAGAATGAT+TGG | - | chr7.4:93700974-93700993 | MS.gene54374:intron | 25.0% |
! | AATCACAAGCATTAAAATAG+TGG | + | chr7.4:93698913-93698932 | None:intergenic | 25.0% |
! | ACAAAGTTACTTAATCAATC+TGG | - | chr7.4:93700495-93700514 | MS.gene54374:CDS | 25.0% |
! | AGATCTATGTACAAATCTAT+AGG | + | chr7.4:93699466-93699485 | None:intergenic | 25.0% |
! | AGCATATTAATAACATGACT+AGG | + | chr7.4:93701601-93701620 | None:intergenic | 25.0% |
! | CACAAATTGCTATAAAGATA+AGG | + | chr7.4:93699529-93699548 | None:intergenic | 25.0% |
! | CATATTTATTTGCTCAAACT+TGG | + | chr7.4:93698723-93698742 | None:intergenic | 25.0% |
! | CATTAAGGTTTATCAAGAAA+AGG | - | chr7.4:93701633-93701652 | MS.gene54374:CDS | 25.0% |
! | GATCTATGTACAAATCTATA+GGG | + | chr7.4:93699465-93699484 | None:intergenic | 25.0% |
! | GATTGATTAAGTAACTTTGT+TGG | + | chr7.4:93700495-93700514 | None:intergenic | 25.0% |
! | GGAAAATTTCTTATACTAGT+TGG | + | chr7.4:93698939-93698958 | None:intergenic | 25.0% |
! | TAGTTAACAATAACAAGTAG+TGG | - | chr7.4:93700632-93700651 | MS.gene54374:intron | 25.0% |
! | TGATTTATATATGCATGACT+TGG | + | chr7.4:93700607-93700626 | None:intergenic | 25.0% |
! | TTATCAAGAAAAGGCTATTA+AGG | - | chr7.4:93701642-93701661 | MS.gene54374:CDS | 25.0% |
! | TTCGGTTTAACAATTCAAAT+TGG | - | chr7.4:93701246-93701265 | MS.gene54374:intron | 25.0% |
!! | AAAGTAAGGATAACATGTTT+TGG | + | chr7.4:93702026-93702045 | None:intergenic | 25.0% |
!! | ATACAAGTTCGATTTTGAAT+CGG | - | chr7.4:93701355-93701374 | MS.gene54374:intron | 25.0% |
!! | GTATATTTTGTTAGTCACTT+TGG | - | chr7.4:93700292-93700311 | MS.gene54374:CDS | 25.0% |
!! | TTTGATTTAACAGTTTGCTT+TGG | + | chr7.4:93701150-93701169 | None:intergenic | 25.0% |
!!! | TCTACTATTTTAGATCCAAA+CGG | - | chr7.4:93699676-93699695 | MS.gene54374:intron | 25.0% |
!!! | TTCATTTTATTTCAAGGACA+TGG | - | chr7.4:93698972-93698991 | MS.gene54374:intron | 25.0% |
AAAAATTGCGTTATTGAAGC+TGG | + | chr7.4:93699845-93699864 | None:intergenic | 30.0% | |
AAATTGTAACCACTTCTGTT+AGG | + | chr7.4:93700902-93700921 | None:intergenic | 30.0% | |
AATATGACTAGGTGTATGTT+TGG | + | chr7.4:93700103-93700122 | None:intergenic | 30.0% | |
AATGTAAGCATAAAGAGCTT+GGG | + | chr7.4:93698251-93698270 | None:intergenic | 30.0% | |
AATGTCCAAGTTAAAGCTTT+CGG | + | chr7.4:93698767-93698786 | None:intergenic | 30.0% | |
ACAAAATATACATTTGGCGA+TGG | + | chr7.4:93700283-93700302 | None:intergenic | 30.0% | |
ACACTAACATATTGTTGTCA+TGG | - | chr7.4:93698445-93698464 | MS.gene54374:CDS | 30.0% | |
ACATATTGTTGTCATGGATT+TGG | - | chr7.4:93698451-93698470 | MS.gene54374:CDS | 30.0% | |
ACTAAATACACTCAACAGAT+TGG | - | chr7.4:93698830-93698849 | MS.gene54374:intron | 30.0% | |
AGGCTATTAAGGATAAAGAA+AGG | - | chr7.4:93701653-93701672 | MS.gene54374:CDS | 30.0% | |
AGTAGTTTCCTAAATCAAAG+CGG | + | chr7.4:93700373-93700392 | None:intergenic | 30.0% | |
ATTGATGGAAAGTTTGAAAG+TGG | - | chr7.4:93700701-93700720 | MS.gene54374:intron | 30.0% | |
GGAAGAAGTCAGAAATAAAA+AGG | - | chr7.4:93700855-93700874 | MS.gene54374:intron | 30.0% | |
GTAACTGTCTACTTAATCTT+TGG | + | chr7.4:93700197-93700216 | None:intergenic | 30.0% | |
TAAAAGTAGACATAGAAGTG+CGG | - | chr7.4:93700129-93700148 | MS.gene54374:intron | 30.0% | |
TAACACAACACTAATACATG+TGG | - | chr7.4:93701468-93701487 | MS.gene54374:intron | 30.0% | |
TATATGAGCTTAAGAACCTT+AGG | - | chr7.4:93700015-93700034 | MS.gene54374:intron | 30.0% | |
TCACGACTCAATTCAATTTA+TGG | + | chr7.4:93699048-93699067 | None:intergenic | 30.0% | |
TCGTGAACAAAACTTTGTAT+GGG | - | chr7.4:93699062-93699081 | MS.gene54374:intron | 30.0% | |
TGTATAAATGTTTGACACAC+CGG | + | chr7.4:93701340-93701359 | None:intergenic | 30.0% | |
TTAGACACTATGACTATTCA+AGG | + | chr7.4:93701451-93701470 | None:intergenic | 30.0% | |
TTATATCAGTCAACGAAGAT+TGG | - | chr7.4:93699223-93699242 | MS.gene54374:CDS | 30.0% | |
! | ACATCATCATATTTTGCAAG+AGG | + | chr7.4:93698218-93698237 | None:intergenic | 30.0% |
! | AGTTCTTTTCCTCCAATAAT+GGG | + | chr7.4:93698516-93698535 | None:intergenic | 30.0% |
! | ATAGTATTTTCTGAGCACAA+AGG | + | chr7.4:93699628-93699647 | None:intergenic | 30.0% |
! | GTATTGCCAAATTGTTGTTA+CGG | - | chr7.4:93701408-93701427 | MS.gene54374:intron | 30.0% |
! | TAAACCAAACTGGTTTAGTT+CGG | + | chr7.4:93701199-93701218 | None:intergenic | 30.0% |
! | TAACAGTTTGCTTTGGTATT+TGG | + | chr7.4:93701143-93701162 | None:intergenic | 30.0% |
! | TACAAGTTCGATTTTGAATC+GGG | - | chr7.4:93701356-93701375 | MS.gene54374:intron | 30.0% |
! | TAGTTCTTTTCCTCCAATAA+TGG | + | chr7.4:93698517-93698536 | None:intergenic | 30.0% |
! | TATCTAGTTTCAGTTTCAGT+AGG | - | chr7.4:93700725-93700744 | MS.gene54374:intron | 30.0% |
! | TGCAAAATATGATGATGTTG+TGG | - | chr7.4:93698220-93698239 | MS.gene54374:CDS | 30.0% |
!!! | TAACGATTTGGTTAGTTTTC+TGG | - | chr7.4:93701284-93701303 | MS.gene54374:intron | 30.0% |
AAAGCTACTAAACCAAACCA+TGG | - | chr7.4:93700949-93700968 | MS.gene54374:intron | 35.0% | |
AAATTGAACCAAACCGTCAT+TGG | + | chr7.4:93701387-93701406 | None:intergenic | 35.0% | |
AATATTGCATCTGCTGCATT+GGG | - | chr7.4:93700809-93700828 | MS.gene54374:intron | 35.0% | |
ACAATATGTTAGTGTCGTGT+CGG | + | chr7.4:93698440-93698459 | None:intergenic | 35.0% | |
ACTGTCTACTTAATCTTTGG+TGG | + | chr7.4:93700194-93700213 | None:intergenic | 35.0% | |
AGCTTATGAAAGAGAGAAGA+TGG | - | chr7.4:93699553-93699572 | MS.gene54374:intron | 35.0% | |
ATATCGAAGACATGTTCGAT+AGG | - | chr7.4:93701103-93701122 | MS.gene54374:intron | 35.0% | |
CAAACAATCATGCCATACTT+CGG | - | chr7.4:93701573-93701592 | MS.gene54374:intron | 35.0% | |
CAAGCTCTTTATGCTTACAT+TGG | - | chr7.4:93698250-93698269 | MS.gene54374:CDS | 35.0% | |
CAATGATTTCCCTATGAAAG+TGG | - | chr7.4:93698163-93698182 | MS.gene54374:CDS | 35.0% | |
CAATGTAAGCATAAAGAGCT+TGG | + | chr7.4:93698252-93698271 | None:intergenic | 35.0% | |
CACTATGACTATTCAAGGTT+CGG | + | chr7.4:93701446-93701465 | None:intergenic | 35.0% | |
CTTCAATTGTAAGCCATGTA+TGG | - | chr7.4:93698381-93698400 | MS.gene54374:CDS | 35.0% | |
GACTCAATTCCTTACTAGTT+GGG | + | chr7.4:93699249-93699268 | None:intergenic | 35.0% | |
GATTGTTTGTAGAACCTATG+AGG | + | chr7.4:93701562-93701581 | None:intergenic | 35.0% | |
GTAGAATGATTGGTGAACTT+TGG | - | chr7.4:93700984-93701003 | MS.gene54374:intron | 35.0% | |
GTCGTGAACAAAACTTTGTA+TGG | - | chr7.4:93699061-93699080 | MS.gene54374:intron | 35.0% | |
GTTCACAAACTAAACCAAAC+TGG | + | chr7.4:93701209-93701228 | None:intergenic | 35.0% | |
TAATATCCTTGTCCATGGTT+TGG | + | chr7.4:93700964-93700983 | None:intergenic | 35.0% | |
TCAAACTTGGACACAATCTA+TGG | + | chr7.4:93698710-93698729 | None:intergenic | 35.0% | |
TCAGGATATGAATGAGACAT+AGG | + | chr7.4:93698194-93698213 | None:intergenic | 35.0% | |
TCTACTAATATCCTTGTCCA+TGG | + | chr7.4:93700969-93700988 | None:intergenic | 35.0% | |
TGACTCAATTCCTTACTAGT+TGG | + | chr7.4:93699250-93699269 | None:intergenic | 35.0% | |
TGTTGCAGATGATATCAACA+TGG | - | chr7.4:93701852-93701871 | MS.gene54374:intron | 35.0% | |
! | ACTTTGGTTCCTAAATGTGT+GGG | + | chr7.4:93700461-93700480 | None:intergenic | 35.0% |
! | TAACCACTTCTGTTAGGTTT+TGG | + | chr7.4:93700896-93700915 | None:intergenic | 35.0% |
! | TCACTTGTTGGAGTTATTGA+TGG | - | chr7.4:93700686-93700705 | MS.gene54374:intron | 35.0% |
! | TCATATTTTGCAAGAGGTTC+AGG | + | chr7.4:93698212-93698231 | None:intergenic | 35.0% |
! | TCTATTAGCCGCTTTGATTT+AGG | - | chr7.4:93700362-93700381 | MS.gene54374:intron | 35.0% |
!! | ACTATTTTAGATCCAAACGG+TGG | - | chr7.4:93699679-93699698 | MS.gene54374:intron | 35.0% |
!!! | AGCTTTTGTTGATTCAGACA+AGG | - | chr7.4:93701909-93701928 | MS.gene54374:CDS | 35.0% |
AATGCTTCTGAATTGCCTCA+AGG | - | chr7.4:93699914-93699933 | MS.gene54374:intron | 40.0% | |
ACTAAACCAAACCATGGACA+AGG | - | chr7.4:93700955-93700974 | MS.gene54374:intron | 40.0% | |
AGCTTAAGAACCTTAGGCTT+CGG | - | chr7.4:93700021-93700040 | MS.gene54374:intron | 40.0% | |
AGGTGTATGTTTGGATTGAC+AGG | + | chr7.4:93700094-93700113 | None:intergenic | 40.0% | |
ATAGGAGCTACCACTTTCAT+AGG | + | chr7.4:93698176-93698195 | None:intergenic | 40.0% | |
ATCAACATGGATGCTTCTTC+CGG | - | chr7.4:93701865-93701884 | MS.gene54374:intron | 40.0% | |
CAATATTGCATCTGCTGCAT+TGG | - | chr7.4:93700808-93700827 | MS.gene54374:intron | 40.0% | |
CAGTATTTCACTGAGCATCA+AGG | - | chr7.4:93699356-93699375 | MS.gene54374:CDS | 40.0% | |
CAGTCCTAATTATCAACAGC+CGG | - | chr7.4:93701318-93701337 | MS.gene54374:intron | 40.0% | |
CATCCAAAACCTAACAGAAG+TGG | - | chr7.4:93700890-93700909 | MS.gene54374:intron | 40.0% | |
GAAGTTCTTAGCCATTGTGA+GGG | - | chr7.4:93701952-93701971 | MS.gene54374:CDS | 40.0% | |
GAGAAGCTTCATGCTTCTAT+GGG | - | chr7.4:93698272-93698291 | MS.gene54374:CDS | 40.0% | |
GATAATCCTCCATTTCTGCT+TGG | + | chr7.4:93701681-93701700 | None:intergenic | 40.0% | |
GCTGAACCGTAACAACAATT+TGG | + | chr7.4:93701417-93701436 | None:intergenic | 40.0% | |
GCTGAGTTTCTCTGACATTA+AGG | - | chr7.4:93701618-93701637 | MS.gene54374:CDS | 40.0% | |
TAAACCGAACCAAACTGTGA+TGG | + | chr7.4:93701235-93701254 | None:intergenic | 40.0% | |
TAGGAGCTACCACTTTCATA+GGG | + | chr7.4:93698175-93698194 | None:intergenic | 40.0% | |
TATTGAAGCTGGAACAGACA+TGG | + | chr7.4:93699834-93699853 | None:intergenic | 40.0% | |
TCTTCTGGATCTTCACTTGT+TGG | - | chr7.4:93700674-93700693 | MS.gene54374:intron | 40.0% | |
TGAAGTTCTTAGCCATTGTG+AGG | - | chr7.4:93701951-93701970 | MS.gene54374:CDS | 40.0% | |
TGAATCCTAGAGACTCATCA+GGG | + | chr7.4:93699392-93699411 | None:intergenic | 40.0% | |
TGATTCAGACAAGGCAACTA+AGG | - | chr7.4:93701918-93701937 | MS.gene54374:CDS | 40.0% | |
TGTTAGCGTAAAGACATCGT+TGG | - | chr7.4:93699303-93699322 | MS.gene54374:CDS | 40.0% | |
TGTTTCAGGGTTCCCATTAT+TGG | - | chr7.4:93698501-93698520 | MS.gene54374:CDS | 40.0% | |
TTCATTGAAGTGACTTCTCG+TGG | - | chr7.4:93698552-93698571 | MS.gene54374:intron | 40.0% | |
TTGGTATGTAGTATTGTGCC+AGG | - | chr7.4:93701526-93701545 | MS.gene54374:intron | 40.0% | |
! | GACTTTGGTTCCTAAATGTG+TGG | + | chr7.4:93700462-93700481 | None:intergenic | 40.0% |
!! | AGAAAGGTACCAAGCAGAAA+TGG | - | chr7.4:93701669-93701688 | MS.gene54374:intron | 40.0% |
ATCCTTGAATGTGCCAAGTG+TGG | - | chr7.4:93700221-93700240 | MS.gene54374:intron | 45.0% | |
ATGCACAAACCAGAAGATGC+AGG | + | chr7.4:93699708-93699727 | None:intergenic | 45.0% | |
ATTGAAGTGACTTCTCGTGG+AGG | - | chr7.4:93698555-93698574 | MS.gene54374:intron | 45.0% | |
CACGTATCGAACACCATACA+TGG | + | chr7.4:93698397-93698416 | None:intergenic | 45.0% | |
CATGACTAGGAACCGAAGTA+TGG | + | chr7.4:93701588-93701607 | None:intergenic | 45.0% | |
CATGATTTAGCCGAAGCCTA+AGG | + | chr7.4:93700034-93700053 | None:intergenic | 45.0% | |
CATTCACTTCTCCCTCACAA+TGG | + | chr7.4:93701966-93701985 | None:intergenic | 45.0% | |
CGAACCGAACTAAACCAGTT+TGG | - | chr7.4:93701192-93701211 | MS.gene54374:intron | 45.0% | |
CTAGAGACTCATCAGGGTTA+GGG | + | chr7.4:93699386-93699405 | None:intergenic | 45.0% | |
CTGAATCCTAGAGACTCATC+AGG | + | chr7.4:93699393-93699412 | None:intergenic | 45.0% | |
CTGTCCATCACAGTTTGGTT+CGG | - | chr7.4:93701228-93701247 | MS.gene54374:intron | 45.0% | |
CTTAGGCTTCGGCTAAATCA+TGG | - | chr7.4:93700032-93700051 | MS.gene54374:intron | 45.0% | |
GAAATACTGAACGCCGACAA+AGG | + | chr7.4:93699345-93699364 | None:intergenic | 45.0% | |
GAGCTTAAGAAGTGACCTTG+AGG | + | chr7.4:93699932-93699951 | None:intergenic | 45.0% | |
GGAGAAGCTTCATGCTTCTA+TGG | - | chr7.4:93698271-93698290 | MS.gene54374:CDS | 45.0% | |
GTAGGTTCAGAGACACTCAA+AGG | - | chr7.4:93700743-93700762 | MS.gene54374:intron | 45.0% | |
GTGAACTGTCCATCACAGTT+TGG | - | chr7.4:93701223-93701242 | MS.gene54374:intron | 45.0% | |
GTTGGAGTAAGCAGTGACTT+TGG | + | chr7.4:93700477-93700496 | None:intergenic | 45.0% | |
TCAGACAAGGCAACTAAGGA+GGG | - | chr7.4:93701922-93701941 | MS.gene54374:CDS | 45.0% | |
TCCAAGTTAAAGCTTTCGGC+TGG | + | chr7.4:93698763-93698782 | None:intergenic | 45.0% | |
TCTGGAAGGAGATTCAGCTT+TGG | - | chr7.4:93701759-93701778 | MS.gene54374:intron | 45.0% | |
TGAAACCGACCCACACATTT+AGG | - | chr7.4:93700449-93700468 | MS.gene54374:intron | 45.0% | |
TGCACAAACCAGAAGATGCA+GGG | + | chr7.4:93699707-93699726 | None:intergenic | 45.0% | |
TGGACAATAGAGACCACACT+TGG | + | chr7.4:93700237-93700256 | None:intergenic | 45.0% | |
TGGTTCCTAAATGTGTGGGT+CGG | + | chr7.4:93700457-93700476 | None:intergenic | 45.0% | |
TGTTCTGCAGTGTCTTCTTC+TGG | - | chr7.4:93700659-93700678 | MS.gene54374:intron | 45.0% | |
TTCAGACAAGGCAACTAAGG+AGG | - | chr7.4:93701921-93701940 | MS.gene54374:CDS | 45.0% | |
TTCAGGGTTCCCATTATTGG+AGG | - | chr7.4:93698504-93698523 | MS.gene54374:CDS | 45.0% | |
TTGAAGTGACTTCTCGTGGA+GGG | - | chr7.4:93698556-93698575 | MS.gene54374:intron | 45.0% | |
TTGAGTCATATGCCCTGCAA+AGG | - | chr7.4:93699262-93699281 | MS.gene54374:CDS | 45.0% | |
! | AAGGTACCAAGCAGAAATGG+AGG | - | chr7.4:93701672-93701691 | MS.gene54374:intron | 45.0% |
! | AGTCGACTTTCAGAAGTCAG+GGG | - | chr7.4:93699889-93699908 | MS.gene54374:intron | 45.0% |
! | CAATTTTTGCAGCCTTCTCC+AGG | - | chr7.4:93699857-93699876 | MS.gene54374:intron | 45.0% |
! | CAGTCGACTTTCAGAAGTCA+GGG | - | chr7.4:93699888-93699907 | MS.gene54374:intron | 45.0% |
! | GAACCAAACCGTCATTGGTT+TGG | + | chr7.4:93701382-93701401 | None:intergenic | 45.0% |
! | GAAGATTGGCCCAACTAGTA+AGG | - | chr7.4:93699237-93699256 | MS.gene54374:CDS | 45.0% |
! | GCATCATGACTTTGTTGTGG+TGG | - | chr7.4:93700057-93700076 | MS.gene54374:intron | 45.0% |
! | TCCAGCCGAAAGCTTTAACT+TGG | - | chr7.4:93698759-93698778 | MS.gene54374:intron | 45.0% |
! | TCTGAGCACAAAGGAAGCAT+TGG | + | chr7.4:93699619-93699638 | None:intergenic | 45.0% |
! | TTGTTGTTACGGTTCAGCTC+AGG | - | chr7.4:93701419-93701438 | MS.gene54374:intron | 45.0% |
!! | CACACCGGCTGTTGATAATT+AGG | + | chr7.4:93701325-93701344 | None:intergenic | 45.0% |
!! | GAAGCATTGGTTGCTGTTGA+TGG | + | chr7.4:93699606-93699625 | None:intergenic | 45.0% |
!!! | CTGTTAGGTTTTGGATGTGC+AGG | + | chr7.4:93700887-93700906 | None:intergenic | 45.0% |
AACATGGATGCTTCTTCCGG+TGG | - | chr7.4:93701868-93701887 | MS.gene54374:intron | 50.0% | |
AAGTCGACTGGATGTGTTCC+TGG | + | chr7.4:93699878-93699897 | None:intergenic | 50.0% | |
ACTCCTGAGGAGAGTAGTTC+TGG | - | chr7.4:93701817-93701836 | MS.gene54374:intron | 50.0% | |
ACTGGATGTGTTCCTGGAGA+AGG | + | chr7.4:93699872-93699891 | None:intergenic | 50.0% | |
AGAATCCACTCTTGCTCCAC+CGG | + | chr7.4:93701887-93701906 | None:intergenic | 50.0% | |
AGCATTGTAACCGACTACGC+GGG | - | chr7.4:93701718-93701737 | MS.gene54374:intron | 50.0% | |
AGGCTTCGGCTAAATCATGG+CGG | - | chr7.4:93700035-93700054 | MS.gene54374:intron | 50.0% | |
AGTTGAACTCACGCCTTTGC+AGG | + | chr7.4:93699278-93699297 | None:intergenic | 50.0% | |
CAGGTGTTTGTGTGCCTCAT+AGG | - | chr7.4:93701545-93701564 | MS.gene54374:intron | 50.0% | |
CCTAACCCTGATGAGTCTCT+AGG | - | chr7.4:93699384-93699403 | MS.gene54374:CDS | 50.0% | |
CCTAGAGACTCATCAGGGTT+AGG | + | chr7.4:93699387-93699406 | None:intergenic | 50.0% | |
CGATTCTTGTCAGACTCCTG+AGG | - | chr7.4:93701804-93701823 | MS.gene54374:intron | 50.0% | |
CTATGAGGCACACAAACACC+TGG | + | chr7.4:93701547-93701566 | None:intergenic | 50.0% | |
GAATCGGGCCAAACCAATGA+CGG | - | chr7.4:93701371-93701390 | MS.gene54374:intron | 50.0% | |
GACCACACTTGGCACATTCA+AGG | + | chr7.4:93700226-93700245 | None:intergenic | 50.0% | |
GCACAAACCAGAAGATGCAG+GGG | + | chr7.4:93699706-93699725 | None:intergenic | 50.0% | |
GCGGCATCATGACTTTGTTG+TGG | - | chr7.4:93700054-93700073 | MS.gene54374:intron | 50.0% | |
GTTGAACTCACGCCTTTGCA+GGG | + | chr7.4:93699277-93699296 | None:intergenic | 50.0% | |
TCACCAGAACTACTCTCCTC+AGG | + | chr7.4:93701823-93701842 | None:intergenic | 50.0% | |
TCCAGAAACCGTTGTTGCAG+TGG | + | chr7.4:93701745-93701764 | None:intergenic | 50.0% | |
TGTGAGGGAGAAGTGAATGC+TGG | - | chr7.4:93701967-93701986 | MS.gene54374:CDS | 50.0% | |
TTCTCGTGGAGGGATTGAGA+AGG | - | chr7.4:93698566-93698585 | MS.gene54374:intron | 50.0% | |
! | CCAGTCGACTTTCAGAAGTC+AGG | - | chr7.4:93699887-93699906 | MS.gene54374:intron | 50.0% |
! | CCTGACTTCTGAAAGTCGAC+TGG | + | chr7.4:93699890-93699909 | None:intergenic | 50.0% |
! | CTGCAACAACGGTTTCTGGA+AGG | - | chr7.4:93701745-93701764 | MS.gene54374:intron | 50.0% |
! | GAGCATTGTAACCGACTACG+CGG | - | chr7.4:93701717-93701736 | MS.gene54374:intron | 50.0% |
! | GGAAGGAGATTCAGCTTTGG+TGG | - | chr7.4:93701762-93701781 | MS.gene54374:intron | 50.0% |
! | GTGTGGGTCGGTTTCACAAT+AGG | + | chr7.4:93700445-93700464 | None:intergenic | 50.0% |
AGACTCATCAGGGTTAGGGC+AGG | + | chr7.4:93699382-93699401 | None:intergenic | 55.0% | |
CTGACTTCTTCCTCCTCCGA+CGG | + | chr7.4:93700847-93700866 | None:intergenic | 55.0% | |
GAGGGAGAAGTGAATGCTGG+CGG | - | chr7.4:93701970-93701989 | MS.gene54374:CDS | 55.0% | |
GCATTGTAACCGACTACGCG+GGG | - | chr7.4:93701719-93701738 | MS.gene54374:intron | 55.0% | |
GCCACTGCAACAACGGTTTC+TGG | - | chr7.4:93701741-93701760 | MS.gene54374:intron | 55.0% | |
GGGCCAAACCAATGACGGTT+TGG | - | chr7.4:93701376-93701395 | MS.gene54374:intron | 55.0% | |
TTCTTCCGGTGGAGCAAGAG+TGG | - | chr7.4:93701879-93701898 | MS.gene54374:CDS | 55.0% | |
ACTTCTTCCTCCTCCGACGG+CGG | + | chr7.4:93700844-93700863 | None:intergenic | 60.0% | |
AGATGCAGGGGTCCACCGTT+TGG | + | chr7.4:93699694-93699713 | None:intergenic | 60.0% | |
ACGCGGGGCCACTGCAACAA+CGG | - | chr7.4:93701734-93701753 | MS.gene54374:intron | 65.0% | |
CGGTGGACCCCTGCATCTTC+TGG | - | chr7.4:93699696-93699715 | MS.gene54374:intron | 65.0% | |
TTGCAGTGGCCCCGCGTAGT+CGG | + | chr7.4:93701731-93701750 | None:intergenic | 65.0% | |
TCCAACGCCGCCGTCGGAGG+AGG | - | chr7.4:93700834-93700853 | MS.gene54374:intron | 75.0% | |
TCCTCCTCCGACGGCGGCGT+TGG | + | chr7.4:93700838-93700857 | None:intergenic | 75.0% | |
TGGGCGTCCAACGCCGCCGT+CGG | - | chr7.4:93700828-93700847 | MS.gene54374:intron | 75.0% | |
! | GCGTCCAACGCCGCCGTCGG+AGG | - | chr7.4:93700831-93700850 | MS.gene54374:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 93698134 | 93702047 | 93698134 | ID=MS.gene54374 |
chr7.4 | mRNA | 93698134 | 93702047 | 93698134 | ID=MS.gene54374.t1;Parent=MS.gene54374 |
chr7.4 | exon | 93701875 | 93702047 | 93701875 | ID=MS.gene54374.t1.exon1;Parent=MS.gene54374.t1 |
chr7.4 | CDS | 93701875 | 93702047 | 93701875 | ID=cds.MS.gene54374.t1;Parent=MS.gene54374.t1 |
chr7.4 | exon | 93701594 | 93701672 | 93701594 | ID=MS.gene54374.t1.exon2;Parent=MS.gene54374.t1 |
chr7.4 | CDS | 93701594 | 93701672 | 93701594 | ID=cds.MS.gene54374.t1;Parent=MS.gene54374.t1 |
chr7.4 | exon | 93700464 | 93700626 | 93700464 | ID=MS.gene54374.t1.exon3;Parent=MS.gene54374.t1 |
chr7.4 | CDS | 93700464 | 93700626 | 93700464 | ID=cds.MS.gene54374.t1;Parent=MS.gene54374.t1 |
chr7.4 | exon | 93700246 | 93700371 | 93700246 | ID=MS.gene54374.t1.exon4;Parent=MS.gene54374.t1 |
chr7.4 | CDS | 93700246 | 93700371 | 93700246 | ID=cds.MS.gene54374.t1;Parent=MS.gene54374.t1 |
chr7.4 | exon | 93699148 | 93699512 | 93699148 | ID=MS.gene54374.t1.exon5;Parent=MS.gene54374.t1 |
chr7.4 | CDS | 93699148 | 93699512 | 93699148 | ID=cds.MS.gene54374.t1;Parent=MS.gene54374.t1 |
chr7.4 | exon | 93698134 | 93698541 | 93698134 | ID=MS.gene54374.t1.exon6;Parent=MS.gene54374.t1 |
chr7.4 | CDS | 93698134 | 93698541 | 93698134 | ID=cds.MS.gene54374.t1;Parent=MS.gene54374.t1 |
Gene Sequence |
Protein sequence |