Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54497.t1 | GAU13611.1 | 59 | 322 | 64 | 5 | 19 | 282 | 26 | 337 | 2.70E-79 | 305.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54497.t1 | Q9FPW6 | 49.5 | 331 | 86 | 4 | 20 | 279 | 29 | 349 | 2.8e-69 | 263.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54497.t1 | A0A2K3PCB8 | 55.8 | 339 | 62 | 4 | 22 | 282 | 32 | 360 | 3.6e-78 | 301.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene54497.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54497.t1 | MTR_8g028190 | 51.818 | 330 | 82 | 5 | 20 | 282 | 27 | 346 | 5.51e-99 | 301 |
| MS.gene54497.t1 | MTR_8g028190 | 48.968 | 339 | 86 | 6 | 20 | 282 | 27 | 354 | 2.73e-89 | 276 |
| MS.gene54497.t1 | MTR_8g028190 | 65.888 | 214 | 52 | 2 | 80 | 282 | 183 | 386 | 4.57e-85 | 266 |
| MS.gene54497.t1 | MTR_8g028190 | 51.667 | 60 | 27 | 2 | 20 | 77 | 27 | 86 | 4.47e-12 | 66.6 |
| MS.gene54497.t1 | MTR_4g088460 | 49.038 | 208 | 76 | 4 | 9 | 216 | 5 | 182 | 1.15e-46 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54497.t1 | AT2G46260 | 55.870 | 247 | 75 | 4 | 47 | 282 | 127 | 350 | 2.06e-81 | 256 |
| MS.gene54497.t1 | AT3G61600 | 61.991 | 221 | 63 | 2 | 73 | 282 | 142 | 352 | 7.45e-81 | 254 |
| MS.gene54497.t1 | AT3G61600 | 62.443 | 221 | 62 | 3 | 73 | 282 | 142 | 352 | 8.03e-81 | 254 |
| MS.gene54497.t1 | AT4G01160 | 44.231 | 312 | 114 | 7 | 15 | 282 | 2 | 297 | 3.36e-62 | 204 |
| MS.gene54497.t1 | AT4G01160 | 41.018 | 334 | 115 | 7 | 15 | 282 | 2 | 319 | 1.16e-57 | 193 |
Find 72 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTCCAGCTTTGCTTCC+AGG | 0.228745 | 7.4:-91661307 | None:intergenic |
| AGCTCCTCTGATGGAGCTTC+TGG | 0.232740 | 7.4:+91660705 | MS.gene54497:CDS |
| GACCTCACCAACTGCATTGC+TGG | 0.285450 | 7.4:+91660756 | MS.gene54497:CDS |
| TTTAGATCATAGTAATTCTT+TGG | 0.303485 | 7.4:+91658855 | MS.gene54497:CDS |
| TCAAATGGGATGAGGGAGTC+AGG | 0.366079 | 7.4:+91660553 | MS.gene54497:CDS |
| GAGGGCATCAAGAATGAAAA+TGG | 0.368658 | 7.4:+91658982 | MS.gene54497:CDS |
| TTCATTACTGACCAGGCATC+AGG | 0.412692 | 7.4:+91661205 | MS.gene54497:intron |
| TTGTTCCACAAGTGCAGATT+GGG | 0.417194 | 7.4:+91658939 | MS.gene54497:CDS |
| ATCCGCTTCGCACACATTCA+AGG | 0.421115 | 7.4:+91661365 | MS.gene54497:CDS |
| GCTGAACAGCATCAGCCATT+AGG | 0.424613 | 7.4:-91660903 | None:intergenic |
| GCTTCCTTCCAGTGTCCTAA+TGG | 0.426496 | 7.4:+91660888 | MS.gene54497:CDS |
| CGAATTTGTCTGCGGCCATC+AGG | 0.428322 | 7.4:-91660783 | None:intergenic |
| GGAAGTCCTGGAAGCAAAGC+TGG | 0.432494 | 7.4:+91661301 | MS.gene54497:CDS |
| GCAGCCAAGCAATACCTTGC+TGG | 0.444541 | 7.4:+91660937 | MS.gene54497:CDS |
| GTGTTAGAATGAGTTTCAAT+TGG | 0.447660 | 7.4:-91658910 | None:intergenic |
| GGAAGCAAAGCTGGAAGAGA+TGG | 0.449641 | 7.4:+91661310 | MS.gene54497:CDS |
| CTGATGGACATGCCTTTAGC+TGG | 0.452238 | 7.4:+91661233 | MS.gene54497:CDS |
| ATTGTTCCACAAGTGCAGAT+TGG | 0.458521 | 7.4:+91658938 | MS.gene54497:CDS |
| CTCAAAACATCTATCTCTAA+AGG | 0.464618 | 7.4:-91658812 | None:intergenic |
| ATTGCCTTTACTCCAGCTAA+AGG | 0.469526 | 7.4:-91661245 | None:intergenic |
| ACCGTGAGAATCACTTCATC+TGG | 0.473703 | 7.4:+91660589 | MS.gene54497:CDS |
| CAATGCACACTCCGGTGTCA+TGG | 0.492487 | 7.4:-91660854 | None:intergenic |
| ACATCTACCTTGTTGAAGAA+TGG | 0.497748 | 7.4:-91660453 | None:intergenic |
| TGCTTGGCTGCATCTATCAA+TGG | 0.503454 | 7.4:-91660925 | None:intergenic |
| AGCGGGCAAGCTTTGCTTCG+AGG | 0.503600 | 7.4:-91661340 | None:intergenic |
| CAGGCATCAGGAGGAGCTGA+TGG | 0.504481 | 7.4:+91661217 | MS.gene54497:intron |
| GGATAGAATACTTCAAATTG+TGG | 0.505201 | 7.4:+91658876 | MS.gene54497:CDS |
| TGCACTTGTGGAACAATCCT+CGG | 0.506847 | 7.4:-91658932 | None:intergenic |
| GGTTGCATCTGAGGAAGTCC+TGG | 0.507134 | 7.4:+91661289 | MS.gene54497:CDS |
| GTGTGCGAAGCGGATGAAGC+GGG | 0.517431 | 7.4:-91661357 | None:intergenic |
| CATGCACAACATACTGCAGC+AGG | 0.522230 | 7.4:+91660815 | MS.gene54497:CDS |
| GAAGCAAAGCTGGAAGAGAT+GGG | 0.522938 | 7.4:+91661311 | MS.gene54497:CDS |
| CATGCCTTTAGCTGGAGTAA+AGG | 0.523060 | 7.4:+91661241 | MS.gene54497:CDS |
| TGCATTGCTGGATGTCCTGA+TGG | 0.528396 | 7.4:+91660768 | MS.gene54497:CDS |
| AATGCACACTCCGGTGTCAT+GGG | 0.534157 | 7.4:-91660853 | None:intergenic |
| TGCAACCTGCAGCTCATCAC+CGG | 0.539336 | 7.4:-91661273 | None:intergenic |
| TGCCCTCTCTTCGCTTGTCG+TGG | 0.539588 | 7.4:-91658966 | None:intergenic |
| ACTCACCGGTGATGAGCTGC+AGG | 0.539704 | 7.4:+91661268 | MS.gene54497:CDS |
| GGATGAGGGAGTCAGGGCAA+AGG | 0.556416 | 7.4:+91660560 | MS.gene54497:CDS |
| GGAGTAAAGGCAATACTCAC+CGG | 0.560369 | 7.4:+91661254 | MS.gene54497:CDS |
| TCTATCTCTAAAGGAAGTAG+AGG | 0.563268 | 7.4:-91658803 | None:intergenic |
| TTCGCACACATTCAAGGTTG+AGG | 0.563375 | 7.4:+91661371 | MS.gene54497:CDS |
| AAAGGAAGTAGAGGCAATGT+TGG | 0.564336 | 7.4:-91658794 | None:intergenic |
| TAGCCACGACAAGCGAAGAG+AGG | 0.569994 | 7.4:+91658963 | MS.gene54497:CDS |
| ACGTCCAGCAAGGTATTGCT+TGG | 0.588157 | 7.4:-91660941 | None:intergenic |
| AGCATCAGCCATTAGGACAC+TGG | 0.594373 | 7.4:-91660896 | None:intergenic |
| TACAGAGGAAGCTCCTCTGA+TGG | 0.595302 | 7.4:+91660696 | MS.gene54497:CDS |
| CAAATGGGATGAGGGAGTCA+GGG | 0.597000 | 7.4:+91660554 | MS.gene54497:CDS |
| AGCCACGACAAGCGAAGAGA+GGG | 0.599879 | 7.4:+91658964 | MS.gene54497:CDS |
| GCTAGCCCAATCTGCACTTG+TGG | 0.600646 | 7.4:-91658944 | None:intergenic |
| GGACACTGGAAGGAAGCTCT+AGG | 0.603702 | 7.4:-91660882 | None:intergenic |
| GCTTCTCTTGCATGTTACAG+AGG | 0.606428 | 7.4:+91660681 | MS.gene54497:CDS |
| TGAGCTGCAGGTTGCATCTG+AGG | 0.608211 | 7.4:+91661280 | MS.gene54497:CDS |
| ATCCAGCAATGCAGTTGGTG+AGG | 0.608584 | 7.4:-91660758 | None:intergenic |
| CATCTTTGTAACGTCCAGCA+AGG | 0.612551 | 7.4:-91660951 | None:intergenic |
| AGGACATCCAGCAATGCAGT+TGG | 0.620635 | 7.4:-91660763 | None:intergenic |
| GATGGCCGCAGACAAATTCG+AGG | 0.625063 | 7.4:+91660786 | MS.gene54497:CDS |
| TCAGCCATTAGGACACTGGA+AGG | 0.630871 | 7.4:-91660892 | None:intergenic |
| ATTACTGACCAGGCATCAGG+AGG | 0.632707 | 7.4:+91661208 | MS.gene54497:intron |
| AGGTAGAGCAATGCACACTC+CGG | 0.634372 | 7.4:-91660862 | None:intergenic |
| AGCAAAGCTGGAAGAGATGG+GGG | 0.639647 | 7.4:+91661313 | MS.gene54497:CDS |
| AAATCCAGAAGCTCCATCAG+AGG | 0.645569 | 7.4:-91660709 | None:intergenic |
| AAGCAAAGCTGGAAGAGATG+GGG | 0.649243 | 7.4:+91661312 | MS.gene54497:CDS |
| ACCAGATGAAGTGATTCTCA+CGG | 0.655274 | 7.4:-91660590 | None:intergenic |
| TGTGTGCGAAGCGGATGAAG+CGG | 0.658944 | 7.4:-91661358 | None:intergenic |
| AACCTTGAATGTGTGCGAAG+CGG | 0.673052 | 7.4:-91661367 | None:intergenic |
| CACAACCTCGAATTTGTCTG+CGG | 0.682054 | 7.4:-91660791 | None:intergenic |
| GCAGAACATACCCATGACAC+CGG | 0.685234 | 7.4:+91660843 | MS.gene54497:CDS |
| CATTAGCTCCCACATCCTAG+CGG | 0.696840 | 7.4:+91660422 | MS.gene54497:CDS |
| ATGCACAACATACTGCAGCA+GGG | 0.714823 | 7.4:+91660816 | MS.gene54497:CDS |
| GAAAAGTCCATTCTTCAACA+AGG | 0.717592 | 7.4:+91660446 | MS.gene54497:CDS |
| TGAAACTCATTCTAACACCG+AGG | 0.737345 | 7.4:+91658915 | MS.gene54497:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTAATTATATTTCAATAG+TGG | + | chr7.4:91660295-91660314 | MS.gene54497:intron | 15.0% |
| !! | GATTTAAACAAATTAATTGA+AGG | - | chr7.4:91661150-91661169 | None:intergenic | 15.0% |
| !! | TAATTTAAATAAAGTGGAAA+AGG | - | chr7.4:91660991-91661010 | None:intergenic | 15.0% |
| !! | TATCAGTAATTTAAATAAAG+TGG | - | chr7.4:91660997-91661016 | None:intergenic | 15.0% |
| !!! | CAATATTTTTTTTTTTACTG+TGG | + | chr7.4:91660262-91660281 | MS.gene54497:intron | 15.0% |
| !! | AATTCACAAAAAGTTATGTT+CGG | - | chr7.4:91659623-91659642 | None:intergenic | 20.0% |
| !! | ACTATTTGTCAAATATTCAT+TGG | + | chr7.4:91659818-91659837 | MS.gene54497:intron | 20.0% |
| !! | AGATTTAAAAGCAAAGTAAA+CGG | - | chr7.4:91659980-91659999 | None:intergenic | 20.0% |
| !! | ATCAAAAAACACAAAATGTA+AGG | - | chr7.4:91659034-91659053 | None:intergenic | 20.0% |
| !! | ATTATTTAACTAGAATCACA+AGG | - | chr7.4:91660323-91660342 | None:intergenic | 20.0% |
| !! | ATTGTTTATGAAACTATTCA+AGG | + | chr7.4:91659267-91659286 | MS.gene54497:intron | 20.0% |
| !! | TCAAAAAACACAAAATGTAA+GGG | - | chr7.4:91659033-91659052 | None:intergenic | 20.0% |
| !! | TTGAGTTATTATTAATGTAC+AGG | + | chr7.4:91660363-91660382 | MS.gene54497:intron | 20.0% |
| !! | TTTAGATCATAGTAATTCTT+TGG | + | chr7.4:91658855-91658874 | MS.gene54497:CDS | 20.0% |
| !!! | AGACAACAATTTTTAGTTTA+TGG | - | chr7.4:91659351-91659370 | None:intergenic | 20.0% |
| !!! | ATGATTTGTCAATCATTTAT+TGG | - | chr7.4:91659887-91659906 | None:intergenic | 20.0% |
| !!! | ATGTCATTTTTTAGTGATAT+AGG | + | chr7.4:91659320-91659339 | MS.gene54497:intron | 20.0% |
| !!! | GATTTTTACAATAAATGTAC+AGG | - | chr7.4:91659859-91659878 | None:intergenic | 20.0% |
| !!! | TGTCATTTTTTAGTGATATA+GGG | + | chr7.4:91659321-91659340 | MS.gene54497:intron | 20.0% |
| !!! | TGTGAATTAGTTTTTCAAAA+TGG | + | chr7.4:91659635-91659654 | MS.gene54497:intron | 20.0% |
| ! | AAAGAAGAAGCAATTATACA+TGG | - | chr7.4:91660188-91660207 | None:intergenic | 25.0% |
| ! | AAAGTATGAAAGAAACAAAG+AGG | - | chr7.4:91659402-91659421 | None:intergenic | 25.0% |
| ! | AACTTAGATATGTCTTTCAA+AGG | + | chr7.4:91659546-91659565 | MS.gene54497:intron | 25.0% |
| ! | AGATCAAATGAACCATATTA+GGG | + | chr7.4:91659472-91659491 | MS.gene54497:intron | 25.0% |
| ! | ATGTATAATTGCTTCTTCTT+TGG | + | chr7.4:91660187-91660206 | MS.gene54497:intron | 25.0% |
| ! | ATTTAAAAGCAAAGTAAACG+GGG | - | chr7.4:91659978-91659997 | None:intergenic | 25.0% |
| ! | ATTTGTCAATCATTTATTGG+TGG | - | chr7.4:91659884-91659903 | None:intergenic | 25.0% |
| ! | CAAATAGTCAATTTACAAGA+TGG | - | chr7.4:91659806-91659825 | None:intergenic | 25.0% |
| ! | GATTTAAAAGCAAAGTAAAC+GGG | - | chr7.4:91659979-91659998 | None:intergenic | 25.0% |
| ! | TAGAGCAATCAAATATGATT+AGG | - | chr7.4:91660648-91660667 | None:intergenic | 25.0% |
| ! | TATTATTAATGTACAGGTGA+TGG | + | chr7.4:91660369-91660388 | MS.gene54497:intron | 25.0% |
| ! | TGAAACTTATTAGCATTCAA+AGG | - | chr7.4:91661189-91661208 | None:intergenic | 25.0% |
| ! | TTGACAAATCATTCGAATTT+CGG | + | chr7.4:91659895-91659914 | MS.gene54497:intron | 25.0% |
| ! | TTTGTAACATATTACCAAAC+TGG | + | chr7.4:91659691-91659710 | MS.gene54497:intron | 25.0% |
| !! | GTTACATAATGTCTCAATTT+TGG | - | chr7.4:91659220-91659239 | None:intergenic | 25.0% |
| !! | TCATACTTTTACCTAGAAAA+TGG | + | chr7.4:91659413-91659432 | MS.gene54497:intron | 25.0% |
| !!! | ATATTTTTGCATTGTATGCA+AGG | + | chr7.4:91661124-91661143 | MS.gene54497:intron | 25.0% |
| AACACAAAATGTAAGGGTTT+AGG | - | chr7.4:91659027-91659046 | None:intergenic | 30.0% | |
| AATAAGTTTCATTACTGACC+AGG | + | chr7.4:91661198-91661217 | MS.gene54497:intron | 30.0% | |
| ACAAAAAGTTATGTTCGGTA+TGG | - | chr7.4:91659618-91659637 | None:intergenic | 30.0% | |
| CAGATCAAATGAACCATATT+AGG | + | chr7.4:91659471-91659490 | MS.gene54497:intron | 30.0% | |
| CTCAAAACATCTATCTCTAA+AGG | - | chr7.4:91658815-91658834 | None:intergenic | 30.0% | |
| GAGACATTATGTAACTTGAT+TGG | + | chr7.4:91659225-91659244 | MS.gene54497:intron | 30.0% | |
| GGATAGAATACTTCAAATTG+TGG | + | chr7.4:91658876-91658895 | MS.gene54497:CDS | 30.0% | |
| GTGTTAGAATGAGTTTCAAT+TGG | - | chr7.4:91658913-91658932 | None:intergenic | 30.0% | |
| TATGGTTTCTGTGGAAAAAA+GGG | - | chr7.4:91659600-91659619 | None:intergenic | 30.0% | |
| TTTAAAAGCAAAGTAAACGG+GGG | - | chr7.4:91659977-91659996 | None:intergenic | 30.0% | |
| ! | AAATGTTCCTTTTCAGTTTG+TGG | - | chr7.4:91659501-91659520 | None:intergenic | 30.0% |
| ! | AATGTTCCTTTTCAGTTTGT+GGG | - | chr7.4:91659500-91659519 | None:intergenic | 30.0% |
| ! | ACTTTTACCTAGAAAATGGA+GGG | + | chr7.4:91659417-91659436 | MS.gene54497:intron | 30.0% |
| ! | ATGTCTCTTCTTTATTGGTT+GGG | + | chr7.4:91660472-91660491 | MS.gene54497:intron | 30.0% |
| ! | ATTTTATCCCTCCATTTTCT+AGG | - | chr7.4:91659427-91659446 | None:intergenic | 30.0% |
| ! | CTTCTGGATTTTATGTACAA+CGG | + | chr7.4:91660721-91660740 | MS.gene54497:CDS | 30.0% |
| ! | GCAAATGTTTTACAAATGCT+GGG | + | chr7.4:91660113-91660132 | MS.gene54497:intron | 30.0% |
| ! | TAACTTGATTGGTGTTCATT+AGG | + | chr7.4:91659236-91659255 | MS.gene54497:intron | 30.0% |
| ! | TACTTTTACCTAGAAAATGG+AGG | + | chr7.4:91659416-91659435 | MS.gene54497:intron | 30.0% |
| ! | TGCAAATGTTTTACAAATGC+TGG | + | chr7.4:91660112-91660131 | MS.gene54497:intron | 30.0% |
| ! | TTTTGCAGCTTTTCTCAAAT+GGG | + | chr7.4:91660539-91660558 | MS.gene54497:intron | 30.0% |
| ! | TTTTTGCAGCTTTTCTCAAA+TGG | + | chr7.4:91660538-91660557 | MS.gene54497:intron | 30.0% |
| !! | CTTTAGAGATAGATGTTTTG+AGG | + | chr7.4:91658813-91658832 | MS.gene54497:CDS | 30.0% |
| !!! | TTACCAAACTGGTTTTTCAA+CGG | + | chr7.4:91659702-91659721 | MS.gene54497:intron | 30.0% |
| ACATCTACCTTGTTGAAGAA+TGG | - | chr7.4:91660456-91660475 | None:intergenic | 35.0% | |
| AGTCAATTTACAAGATGGTC+CGG | - | chr7.4:91659801-91659820 | None:intergenic | 35.0% | |
| GAAAAGTCCATTCTTCAACA+AGG | + | chr7.4:91660446-91660465 | MS.gene54497:CDS | 35.0% | |
| GATGTCTCTTCTTTATTGGT+TGG | + | chr7.4:91660471-91660490 | MS.gene54497:intron | 35.0% | |
| GGTAGATGTCTCTTCTTTAT+TGG | + | chr7.4:91660467-91660486 | MS.gene54497:intron | 35.0% | |
| GTATGGTTTCTGTGGAAAAA+AGG | - | chr7.4:91659601-91659620 | None:intergenic | 35.0% | |
| TCAAACAAAAAATTAGCGCG+TGG | + | chr7.4:91659376-91659395 | MS.gene54497:intron | 35.0% | |
| TCGAATTTCGGCTATTTAAG+AGG | + | chr7.4:91659907-91659926 | MS.gene54497:intron | 35.0% | |
| ! | ATGTTTTACAAATGCTGGGA+TGG | + | chr7.4:91660117-91660136 | MS.gene54497:intron | 35.0% |
| ! | TCTATCTCTAAAGGAAGTAG+AGG | - | chr7.4:91658806-91658825 | None:intergenic | 35.0% |
| ! | TGTTTTACAAATGCTGGGAT+GGG | + | chr7.4:91660118-91660137 | MS.gene54497:intron | 35.0% |
| !! | AATGTCAGAAGTTCAAGTTG+TGG | + | chr7.4:91660078-91660097 | MS.gene54497:intron | 35.0% |
| !! | TGTGTTATTTGATCCTACCA+TGG | + | chr7.4:91660023-91660042 | MS.gene54497:intron | 35.0% |
| !!! | CCAGTTTTTGAGATAGTAGA+GGG | + | chr7.4:91659057-91659076 | MS.gene54497:intron | 35.0% |
| !!! | TCAAAGGTGCTTAAGTGTTT+TGG | + | chr7.4:91659562-91659581 | MS.gene54497:intron | 35.0% |
| !!! | TCCAGTTTTTGAGATAGTAG+AGG | + | chr7.4:91659056-91659075 | MS.gene54497:intron | 35.0% |
| !!! | TGTTTTGAGGATGCTGATTT+CGG | + | chr7.4:91658826-91658845 | MS.gene54497:CDS | 35.0% |
| AAAGGAAGTAGAGGCAATGT+TGG | - | chr7.4:91658797-91658816 | None:intergenic | 40.0% | |
| ACCAGATGAAGTGATTCTCA+CGG | - | chr7.4:91660593-91660612 | None:intergenic | 40.0% | |
| AGTTTGTGGGAACCCTAATA+TGG | - | chr7.4:91659487-91659506 | None:intergenic | 40.0% | |
| ATTGCCTTTACTCCAGCTAA+AGG | - | chr7.4:91661248-91661267 | None:intergenic | 40.0% | |
| ATTGTTCCACAAGTGCAGAT+TGG | + | chr7.4:91658938-91658957 | MS.gene54497:CDS | 40.0% | |
| ATTTACAAGATGGTCCGGTT+CGG | - | chr7.4:91659796-91659815 | None:intergenic | 40.0% | |
| CCCTCTACTATCTCAAAAAC+TGG | - | chr7.4:91659060-91659079 | None:intergenic | 40.0% | |
| TATGTTCGGTATGGTTTCTG+TGG | - | chr7.4:91659609-91659628 | None:intergenic | 40.0% | |
| TGAAACTCATTCTAACACCG+AGG | + | chr7.4:91658915-91658934 | MS.gene54497:CDS | 40.0% | |
| TGTCCGTTGAAAAACCAGTT+TGG | - | chr7.4:91659708-91659727 | None:intergenic | 40.0% | |
| TTGTTCCACAAGTGCAGATT+GGG | + | chr7.4:91658939-91658958 | MS.gene54497:CDS | 40.0% | |
| ! | AGCTTTTCTCAAATGGGATG+AGG | + | chr7.4:91660545-91660564 | MS.gene54497:intron | 40.0% |
| ! | GCTTTTCTCAAATGGGATGA+GGG | + | chr7.4:91660546-91660565 | MS.gene54497:intron | 40.0% |
| ! | TATTCATTGGTTGTGCACAG+CGG | + | chr7.4:91659831-91659850 | MS.gene54497:intron | 40.0% |
| ! | TGTAAGGGTTTAGGACAGAA+AGG | - | chr7.4:91659018-91659037 | None:intergenic | 40.0% |
| !! | GAGGGCATCAAGAATGAAAA+TGG | + | chr7.4:91658982-91659001 | MS.gene54497:CDS | 40.0% |
| !! | TTTTTCAACGGACACCATAC+CGG | + | chr7.4:91659714-91659733 | MS.gene54497:intron | 40.0% |
| AAATCCAGAAGCTCCATCAG+AGG | - | chr7.4:91660712-91660731 | None:intergenic | 45.0% | |
| AACCTTGAATGTGTGCGAAG+CGG | - | chr7.4:91661370-91661389 | None:intergenic | 45.0% | |
| AAGCAAAGCTGGAAGAGATG+GGG | + | chr7.4:91661312-91661331 | MS.gene54497:CDS | 45.0% | |
| AATCAACGTACCAGTGAGTC+CGG | - | chr7.4:91659736-91659755 | None:intergenic | 45.0% | |
| ACCGTGAGAATCACTTCATC+TGG | + | chr7.4:91660589-91660608 | MS.gene54497:CDS | 45.0% | |
| AGCAGGGTTCAAGGAAAGAT+CGG | - | chr7.4:91660145-91660164 | None:intergenic | 45.0% | |
| AGGGTTCCCACAAACTGAAA+AGG | + | chr7.4:91659491-91659510 | MS.gene54497:intron | 45.0% | |
| ATAAAACTCCCGCCATAGCA+GGG | - | chr7.4:91660161-91660180 | None:intergenic | 45.0% | |
| ATGCACAACATACTGCAGCA+GGG | + | chr7.4:91660816-91660835 | MS.gene54497:CDS | 45.0% | |
| CACAACCTCGAATTTGTCTG+CGG | - | chr7.4:91660794-91660813 | None:intergenic | 45.0% | |
| CATCTTTGTAACGTCCAGCA+AGG | - | chr7.4:91660954-91660973 | None:intergenic | 45.0% | |
| CATGCCTTTAGCTGGAGTAA+AGG | + | chr7.4:91661241-91661260 | MS.gene54497:CDS | 45.0% | |
| CGGCTATTTAAGAGGAGAAC+CGG | + | chr7.4:91659915-91659934 | MS.gene54497:intron | 45.0% | |
| GAAGCAAAGCTGGAAGAGAT+GGG | + | chr7.4:91661311-91661330 | MS.gene54497:CDS | 45.0% | |
| GCTATTTAAGAGGAGAACCG+GGG | + | chr7.4:91659917-91659936 | MS.gene54497:intron | 45.0% | |
| GCTTCTCTTGCATGTTACAG+AGG | + | chr7.4:91660681-91660700 | MS.gene54497:CDS | 45.0% | |
| GGAGTAAAGGCAATACTCAC+CGG | + | chr7.4:91661254-91661273 | MS.gene54497:CDS | 45.0% | |
| GGCTATTTAAGAGGAGAACC+GGG | + | chr7.4:91659916-91659935 | MS.gene54497:intron | 45.0% | |
| TATAAAACTCCCGCCATAGC+AGG | - | chr7.4:91660162-91660181 | None:intergenic | 45.0% | |
| TCTTTCCTTGAACCCTGCTA+TGG | + | chr7.4:91660146-91660165 | MS.gene54497:intron | 45.0% | |
| TGCACTTGTGGAACAATCCT+CGG | - | chr7.4:91658935-91658954 | None:intergenic | 45.0% | |
| TGCTTGGCTGCATCTATCAA+TGG | - | chr7.4:91660928-91660947 | None:intergenic | 45.0% | |
| TTCATTACTGACCAGGCATC+AGG | + | chr7.4:91661205-91661224 | MS.gene54497:intron | 45.0% | |
| ! | TTCTGTGGAAAAAAGGGCAC+TGG | - | chr7.4:91659594-91659613 | None:intergenic | 45.0% |
| !! | ATGTGTGTTACTTGATGCCC+CGG | - | chr7.4:91659937-91659956 | None:intergenic | 45.0% |
| AGCAAAGCTGGAAGAGATGG+GGG | + | chr7.4:91661313-91661332 | MS.gene54497:CDS | 50.0% | |
| AGCATCAGCCATTAGGACAC+TGG | - | chr7.4:91660899-91660918 | None:intergenic | 50.0% | |
| AGGACATCCAGCAATGCAGT+TGG | - | chr7.4:91660766-91660785 | None:intergenic | 50.0% | |
| AGGTAGAGCAATGCACACTC+CGG | - | chr7.4:91660865-91660884 | None:intergenic | 50.0% | |
| ATCCGCTTCGCACACATTCA+AGG | + | chr7.4:91661365-91661384 | MS.gene54497:CDS | 50.0% | |
| ATTACTGACCAGGCATCAGG+AGG | + | chr7.4:91661208-91661227 | MS.gene54497:intron | 50.0% | |
| CAAATGGGATGAGGGAGTCA+GGG | + | chr7.4:91660554-91660573 | MS.gene54497:CDS | 50.0% | |
| CATGCACAACATACTGCAGC+AGG | + | chr7.4:91660815-91660834 | MS.gene54497:CDS | 50.0% | |
| CATTAGCTCCCACATCCTAG+CGG | + | chr7.4:91660422-91660441 | MS.gene54497:CDS | 50.0% | |
| GCAGAACATACCCATGACAC+CGG | + | chr7.4:91660843-91660862 | MS.gene54497:CDS | 50.0% | |
| GCTGAACAGCATCAGCCATT+AGG | - | chr7.4:91660906-91660925 | None:intergenic | 50.0% | |
| GCTTCCTTCCAGTGTCCTAA+TGG | + | chr7.4:91660888-91660907 | MS.gene54497:CDS | 50.0% | |
| GGAAGCAAAGCTGGAAGAGA+TGG | + | chr7.4:91661310-91661329 | MS.gene54497:CDS | 50.0% | |
| TACAGAGGAAGCTCCTCTGA+TGG | + | chr7.4:91660696-91660715 | MS.gene54497:CDS | 50.0% | |
| TACGTCTGTCGAGTCAAGAG+TGG | + | chr7.4:91660235-91660254 | MS.gene54497:intron | 50.0% | |
| TCAAATGGGATGAGGGAGTC+AGG | + | chr7.4:91660553-91660572 | MS.gene54497:CDS | 50.0% | |
| TCAGCCATTAGGACACTGGA+AGG | - | chr7.4:91660895-91660914 | None:intergenic | 50.0% | |
| TCCTACCATGGCTCAACGAT+CGG | + | chr7.4:91660035-91660054 | MS.gene54497:intron | 50.0% | |
| TCTCTTCCAGCTTTGCTTCC+AGG | - | chr7.4:91661310-91661329 | None:intergenic | 50.0% | |
| TGCATTGCTGGATGTCCTGA+TGG | + | chr7.4:91660768-91660787 | MS.gene54497:CDS | 50.0% | |
| TTCCTTGAACCCTGCTATGG+CGG | + | chr7.4:91660149-91660168 | MS.gene54497:intron | 50.0% | |
| TTTGTAACACGCTGCCGAAC+CGG | + | chr7.4:91659779-91659798 | MS.gene54497:intron | 50.0% | |
| ! | ACTTTTCGCCGCTAGGATGT+GGG | - | chr7.4:91660433-91660452 | None:intergenic | 50.0% |
| ! | ATCCAGCAATGCAGTTGGTG+AGG | - | chr7.4:91660761-91660780 | None:intergenic | 50.0% |
| ! | CTGATGGACATGCCTTTAGC+TGG | + | chr7.4:91661233-91661252 | MS.gene54497:CDS | 50.0% |
| !! | AATGCACACTCCGGTGTCAT+GGG | - | chr7.4:91660856-91660875 | None:intergenic | 50.0% |
| !! | ACGTCCAGCAAGGTATTGCT+TGG | - | chr7.4:91660944-91660963 | None:intergenic | 50.0% |
| !! | AGAATGGACTTTTCGCCGCT+AGG | - | chr7.4:91660440-91660459 | None:intergenic | 50.0% |
| ACGTACCAGTGAGTCCGGTA+TGG | - | chr7.4:91659731-91659750 | None:intergenic | 55.0% | |
| AGCCACGACAAGCGAAGAGA+GGG | + | chr7.4:91658964-91658983 | MS.gene54497:CDS | 55.0% | |
| AGCTCCTCTGATGGAGCTTC+TGG | + | chr7.4:91660705-91660724 | MS.gene54497:CDS | 55.0% | |
| CAACTCCGATCGTTGAGCCA+TGG | - | chr7.4:91660043-91660062 | None:intergenic | 55.0% | |
| CGAATTTGTCTGCGGCCATC+AGG | - | chr7.4:91660786-91660805 | None:intergenic | 55.0% | |
| GACCTCACCAACTGCATTGC+TGG | + | chr7.4:91660756-91660775 | MS.gene54497:CDS | 55.0% | |
| GATGGCCGCAGACAAATTCG+AGG | + | chr7.4:91660786-91660805 | MS.gene54497:CDS | 55.0% | |
| GCAGCCAAGCAATACCTTGC+TGG | + | chr7.4:91660937-91660956 | MS.gene54497:CDS | 55.0% | |
| GCTAGCCCAATCTGCACTTG+TGG | - | chr7.4:91658947-91658966 | None:intergenic | 55.0% | |
| GGAAGTCCTGGAAGCAAAGC+TGG | + | chr7.4:91661301-91661320 | MS.gene54497:CDS | 55.0% | |
| GGACACTGGAAGGAAGCTCT+AGG | - | chr7.4:91660885-91660904 | None:intergenic | 55.0% | |
| GGTTGCATCTGAGGAAGTCC+TGG | + | chr7.4:91661289-91661308 | MS.gene54497:CDS | 55.0% | |
| TAGCCACGACAAGCGAAGAG+AGG | + | chr7.4:91658963-91658982 | MS.gene54497:CDS | 55.0% | |
| TCCGATCGTTGAGCCATGGT+AGG | - | chr7.4:91660039-91660058 | None:intergenic | 55.0% | |
| TCCTTGAACCCTGCTATGGC+GGG | + | chr7.4:91660150-91660169 | MS.gene54497:intron | 55.0% | |
| TGAGCTGCAGGTTGCATCTG+AGG | + | chr7.4:91661280-91661299 | MS.gene54497:CDS | 55.0% | |
| TGCAACCTGCAGCTCATCAC+CGG | - | chr7.4:91661276-91661295 | None:intergenic | 55.0% | |
| TGTGTGCGAAGCGGATGAAG+CGG | - | chr7.4:91661361-91661380 | None:intergenic | 55.0% | |
| ! | CAATGCACACTCCGGTGTCA+TGG | - | chr7.4:91660857-91660876 | None:intergenic | 55.0% |
| ! | GACTTTTCGCCGCTAGGATG+TGG | - | chr7.4:91660434-91660453 | None:intergenic | 55.0% |
| ACTCACCGGTGATGAGCTGC+AGG | + | chr7.4:91661268-91661287 | MS.gene54497:CDS | 60.0% | |
| AGCGGGCAAGCTTTGCTTCG+AGG | - | chr7.4:91661343-91661362 | None:intergenic | 60.0% | |
| CAGGCATCAGGAGGAGCTGA+TGG | + | chr7.4:91661217-91661236 | MS.gene54497:intron | 60.0% | |
| CATCAGCTCCTCCTGATGCC+TGG | - | chr7.4:91661219-91661238 | None:intergenic | 60.0% | |
| GGACACCATACCGGACTCAC+TGG | + | chr7.4:91659723-91659742 | MS.gene54497:intron | 60.0% | |
| GGATGAGGGAGTCAGGGCAA+AGG | + | chr7.4:91660560-91660579 | MS.gene54497:CDS | 60.0% | |
| GTGTGCGAAGCGGATGAAGC+GGG | - | chr7.4:91661360-91661379 | None:intergenic | 60.0% | |
| TCCCGCCATAGCAGGGTTCA+AGG | - | chr7.4:91660154-91660173 | None:intergenic | 60.0% | |
| TGCCCTCTCTTCGCTTGTCG+TGG | - | chr7.4:91658969-91658988 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 91658778 | 91661391 | 91658778 | ID=MS.gene54497 |
| chr7.4 | mRNA | 91658778 | 91661391 | 91658778 | ID=MS.gene54497.t1;Parent=MS.gene54497 |
| chr7.4 | exon | 91658778 | 91659003 | 91658778 | ID=MS.gene54497.t1.exon1;Parent=MS.gene54497.t1 |
| chr7.4 | CDS | 91658778 | 91659003 | 91658778 | ID=cds.MS.gene54497.t1;Parent=MS.gene54497.t1 |
| chr7.4 | exon | 91660385 | 91660467 | 91660385 | ID=MS.gene54497.t1.exon2;Parent=MS.gene54497.t1 |
| chr7.4 | CDS | 91660385 | 91660467 | 91660385 | ID=cds.MS.gene54497.t1;Parent=MS.gene54497.t1 |
| chr7.4 | exon | 91660547 | 91660610 | 91660547 | ID=MS.gene54497.t1.exon3;Parent=MS.gene54497.t1 |
| chr7.4 | CDS | 91660547 | 91660610 | 91660547 | ID=cds.MS.gene54497.t1;Parent=MS.gene54497.t1 |
| chr7.4 | exon | 91660671 | 91660980 | 91660671 | ID=MS.gene54497.t1.exon4;Parent=MS.gene54497.t1 |
| chr7.4 | CDS | 91660671 | 91660980 | 91660671 | ID=cds.MS.gene54497.t1;Parent=MS.gene54497.t1 |
| chr7.4 | exon | 91661220 | 91661391 | 91661220 | ID=MS.gene54497.t1.exon5;Parent=MS.gene54497.t1 |
| chr7.4 | CDS | 91661220 | 91661391 | 91661220 | ID=cds.MS.gene54497.t1;Parent=MS.gene54497.t1 |
| Gene Sequence |
| Protein sequence |
