AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54508

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54508.t1 MTR_7g007540 88.525 122 14 0 133 254 1 122 2.28e-74 222
MS.gene54508.t1 MTR_7g007630 84.091 132 21 0 124 255 657 788 8.43e-72 234
MS.gene54508.t1 MTR_7g407130 64.444 180 60 2 78 255 641 818 2.31e-69 228
MS.gene54508.t1 MTR_7g007620 81.818 132 24 0 124 255 611 742 5.80e-63 210
MS.gene54508.t1 MTR_0491s0030 65.000 180 59 2 78 255 649 826 1.48e-60 204
MS.gene54508.t1 MTR_8g047230 65.000 180 59 2 78 255 820 997 5.40e-60 204
MS.gene54508.t1 MTR_7g007560 58.201 189 69 3 74 254 588 774 5.55e-60 202
MS.gene54508.t1 MTR_8g047210 82.576 132 23 0 124 255 759 890 7.60e-60 203
MS.gene54508.t1 MTR_8g047220 82.576 132 23 0 124 255 822 953 1.01e-59 203
MS.gene54508.t1 MTR_7g407090 60.309 194 70 3 64 255 585 773 3.74e-59 200
MS.gene54508.t1 MTR_7g009970 58.889 180 68 3 78 254 614 790 6.41e-58 197
MS.gene54508.t1 MTR_7g010000 58.523 176 67 3 83 255 696 868 5.90e-57 195
MS.gene54508.t1 MTR_7g013680 54.639 194 76 4 71 255 551 741 8.43e-53 182
MS.gene54508.t1 MTR_7g007580 79.825 114 23 0 142 255 3 116 6.54e-52 165
MS.gene54508.t1 MTR_7g013350 60.465 129 51 0 124 252 286 414 1.38e-44 155
MS.gene54508.t1 MTR_7g010010 50.286 175 62 4 84 255 567 719 1.02e-42 154
MS.gene54508.t1 MTR_8g047160 60.284 141 52 2 78 216 476 614 1.48e-38 142
MS.gene54508.t1 MTR_7g007590 56.250 128 24 4 1 115 250 358 2.30e-30 117
MS.gene54508.t1 MTR_8g047200 57.983 119 39 3 1 115 129 240 2.33e-29 111
MS.gene54508.t1 MTR_5g085700 45.378 119 60 2 128 242 915 1032 5.35e-26 107
MS.gene54508.t1 MTR_7g481630 51.429 105 46 2 128 228 75 178 6.93e-26 100
MS.gene54508.t1 MTR_7g009940 41.667 120 70 0 124 243 689 808 1.23e-25 105
MS.gene54508.t1 MTR_1g039080 52.041 98 41 3 128 220 187 283 1.31e-25 102
MS.gene54508.t1 MTR_7g045710 54.839 93 40 2 128 220 966 1056 2.97e-25 104
MS.gene54508.t1 MTR_7g081720 47.500 120 56 3 128 241 959 1077 2.37e-24 102
MS.gene54508.t1 MTR_7g081570 51.429 105 46 2 128 228 934 1037 3.66e-24 101
MS.gene54508.t1 MTR_7g481590 51.429 105 46 2 128 228 198 301 4.02e-24 99.0
MS.gene54508.t1 MTR_1g039310 46.729 107 50 3 119 220 1036 1140 4.64e-24 101
MS.gene54508.t1 MTR_1g038890 53.061 98 40 3 128 220 1028 1124 4.75e-24 101
MS.gene54508.t1 MTR_4g037720 46.939 98 51 1 128 225 843 939 2.00e-23 99.4
MS.gene54508.t1 MTR_1g039240 47.115 104 46 2 128 223 1053 1155 2.21e-23 99.4
MS.gene54508.t1 MTR_7g039330 52.577 97 43 3 128 222 1183 1278 2.40e-23 99.4
MS.gene54508.t1 MTR_7g045510 52.577 97 43 3 128 222 1085 1180 2.41e-23 99.4
MS.gene54508.t1 MTR_1g039220 49.038 104 44 2 128 223 1027 1129 5.68e-23 98.2
MS.gene54508.t1 MTR_7g045860 49.474 95 45 2 128 220 978 1071 5.75e-23 98.2
MS.gene54508.t1 MTR_8g445960 42.593 108 56 2 128 230 58 164 7.14e-23 92.0
MS.gene54508.t1 MTR_8g044940 42.593 108 56 2 128 230 58 164 7.14e-23 92.0
MS.gene54508.t1 MTR_7g028432 46.237 93 49 1 128 220 848 939 1.02e-22 97.4
MS.gene54508.t1 MTR_4g037015 46.237 93 49 1 128 220 772 863 1.07e-22 97.4
MS.gene54508.t1 MTR_7g081780 44.538 119 61 2 128 242 942 1059 1.81e-22 96.7
MS.gene54508.t1 MTR_7g446160 50.000 106 47 3 124 224 878 982 2.50e-22 96.3
MS.gene54508.t1 MTR_7g081410 47.619 105 50 2 128 228 941 1044 5.98e-22 95.1
MS.gene54508.t1 MTR_7g081410 45.082 122 61 3 128 244 821 941 6.29e-22 95.1
MS.gene54508.t1 MTR_0400s0040 47.115 104 46 2 128 223 1053 1155 6.62e-22 95.1
MS.gene54508.t1 MTR_0365s0030 47.115 104 46 2 128 223 1053 1155 6.62e-22 95.1
MS.gene54508.t1 MTR_7g081480 44.068 118 61 2 128 241 944 1060 7.87e-22 94.7
MS.gene54508.t1 MTR_7g096980 44.262 122 63 3 124 241 1099 1219 1.60e-21 94.0
MS.gene54508.t1 MTR_1g040615 46.154 104 47 2 128 223 2019 2121 2.14e-21 93.6
MS.gene54508.t1 MTR_1g040615 46.078 102 46 2 128 221 1020 1120 6.86e-21 92.0
MS.gene54508.t1 MTR_1g040525 45.192 104 48 2 128 223 762 864 8.13e-21 91.7
MS.gene54508.t1 MTR_1g040545 45.192 104 48 2 128 223 902 1004 1.16e-20 91.3
MS.gene54508.t1 MTR_7g051040 45.098 102 46 2 128 220 838 938 8.73e-20 89.0
MS.gene54508.t1 MTR_7g050990 47.525 101 44 3 128 220 814 913 1.79e-19 87.8
MS.gene54508.t1 MTR_0400s0030 42.574 101 52 2 128 223 786 885 1.41e-18 85.1
MS.gene54508.t1 MTR_0365s0020 42.574 101 52 2 128 223 786 885 1.41e-18 85.1
MS.gene54508.t1 MTR_7g446190 42.529 87 44 2 128 209 810 895 4.03e-15 75.1
MS.gene54508.t1 MTR_4g097880 40.171 117 55 5 124 230 858 969 1.47e-13 70.5
MS.gene54508.t1 MTR_1g079520 36.207 116 60 4 124 230 937 1047 5.21e-13 68.9
MS.gene54508.t1 MTR_5g014700 38.261 115 58 4 124 230 861 970 8.70e-13 68.2
MS.gene54508.t1 MTR_2g005810 37.143 105 54 3 124 220 856 956 6.98e-12 65.5
MS.gene54508.t1 MTR_2g070020 36.275 102 57 2 124 218 978 1078 7.32e-12 65.5
MS.gene54508.t1 MTR_1g047670 35.577 104 57 3 124 218 980 1082 5.13e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54508.t1 AT1G35710 41.414 99 57 1 124 222 1022 1119 4.41e-19 87.0
MS.gene54508.t1 AT4G08850 42.000 100 56 2 124 222 946 1044 5.41e-19 86.7
MS.gene54508.t1 AT2G33170 37.864 103 57 2 123 218 993 1095 2.87e-13 69.7
MS.gene54508.t1 AT2G33170 37.864 103 57 2 123 218 993 1095 2.87e-13 69.7
MS.gene54508.t1 AT5G65700 38.931 131 59 5 124 237 863 989 6.14e-13 68.6
MS.gene54508.t1 AT5G65700 38.931 131 59 5 124 237 863 989 6.14e-13 68.6
MS.gene54508.t1 AT5G63930 36.893 103 57 2 123 218 973 1074 2.78e-12 66.6
MS.gene54508.t1 AT5G63930 36.893 103 57 2 123 218 909 1010 2.85e-12 66.6
MS.gene54508.t1 AT3G49670 39.167 120 58 6 124 235 859 971 3.19e-12 66.6

Find 38 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGGACCCAGTTTGAGGTTC+AGG 0.322626 7.4:+91275593 MS.gene54508:CDS
CGTATAACTATGTCATTATA+TGG 0.325715 7.4:-91277475 None:intergenic
TTTCTTCCTGAACCTCAAAC+TGG 0.329825 7.4:-91275599 None:intergenic
GTTGCAGAACAGAACTTTCC+TGG 0.352244 7.4:-91275360 None:intergenic
TGTGACACACGTTCCATTGC+TGG 0.353097 7.4:-91277559 None:intergenic
AACCTCAAACTGGGTCCTAT+TGG 0.372953 7.4:-91275589 None:intergenic
TCACTCAAAGGAATGCTTGA+TGG 0.394455 7.4:-91277604 None:intergenic
ACGAGTTGATAATATATTGT+TGG 0.402701 7.4:-91275538 None:intergenic
TGCAGAGTTGGCCTATACTA+TGG 0.417045 7.4:+91277300 MS.gene54508:CDS
AAGTGCGATGTGTATAGTTT+TGG 0.425356 7.4:+91277334 MS.gene54508:CDS
GCAACTCAATCGAACATAGT+TGG 0.436537 7.4:+91275378 MS.gene54508:CDS
TTCATTCACCGCCATAGTAT+AGG 0.448753 7.4:-91277311 None:intergenic
CATATAACTCAGATTTGTGC+TGG 0.453859 7.4:-91275490 None:intergenic
GGAAAAGAAATCCTGGTTCC+AGG 0.454630 7.4:+91275446 MS.gene54508:CDS
CAACTCAATCGAACATAGTT+GGG 0.456398 7.4:+91275379 MS.gene54508:CDS
CTTCCATCGAATCTGCCAAT+AGG 0.457574 7.4:+91275574 MS.gene54508:CDS
TGCCAATAGGACCCAGTTTG+AGG 0.479582 7.4:+91275587 MS.gene54508:CDS
TCCTCGTTCTCGACCAGCAA+TGG 0.505680 7.4:+91277546 MS.gene54508:CDS
TGCACTGAAATTTCACTCAA+AGG 0.510871 7.4:-91277616 None:intergenic
ATCGAACATAGTTGGGCTGA+TGG 0.518330 7.4:+91275386 MS.gene54508:CDS
TTCTTCCTGAACCTCAAACT+GGG 0.523114 7.4:-91275598 None:intergenic
ACTATGTCATTATATGGAAG+TGG 0.529861 7.4:-91277469 None:intergenic
GGTCCTATTGGCAGATTCGA+TGG 0.535654 7.4:-91275577 None:intergenic
TCCATTGCTGGTCGAGAACG+AGG 0.537604 7.4:-91277547 None:intergenic
AATATATTATCAACTCGTGA+AGG 0.546946 7.4:+91275543 MS.gene54508:CDS
TAGCAAAGCTACCTGGAACC+AGG 0.553369 7.4:-91275457 None:intergenic
GAAGCATTAGCAAAGCTACC+TGG 0.561569 7.4:-91275464 None:intergenic
TGTAGTCGCACTTGAAACTC+TGG 0.563300 7.4:+91277357 MS.gene54508:CDS
ACTCTGGTTGGAAGACACCC+TGG 0.594037 7.4:+91277373 MS.gene54508:CDS
ATATATTATCAACTCGTGAA+GGG 0.594488 7.4:+91275544 MS.gene54508:CDS
CTATTGGCAGATTCGATGGA+AGG 0.597690 7.4:-91275573 None:intergenic
TGACATAATTCATGTTTCTG+TGG 0.606610 7.4:+91277498 MS.gene54508:CDS
AGCGTGAAATATGAAAATCC+AGG 0.610336 7.4:+91275342 MS.gene54508:CDS
GTCGCACTTGAAACTCTGGT+TGG 0.610701 7.4:+91277361 MS.gene54508:CDS
ATATAACTCAGATTTGTGCT+GGG 0.616237 7.4:-91275489 None:intergenic
AATGCTTGATGGTGTAAGCT+CGG 0.662492 7.4:-91277593 None:intergenic
TATATGGAAGTGGAAGACGT+TGG 0.731938 7.4:-91277459 None:intergenic
AGAGTTGGCCTATACTATGG+CGG 0.732256 7.4:+91277303 MS.gene54508:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATTTTGTTTTTATTTAT+TGG + chr7.4:91276041-91276060 MS.gene54508:intron 10.0%
!! ATATCAATAATTAATTTACG+AGG - chr7.4:91277110-91277129 None:intergenic 15.0%
!!! AGATGATTTTTCATATTTAT+GGG + chr7.4:91276341-91276360 MS.gene54508:intron 15.0%
!!! TAAAAATTAAGTTGTATTCT+GGG + chr7.4:91276298-91276317 MS.gene54508:intron 15.0%
!!! TTAAAGCGATATTTTATATT+GGG + chr7.4:91277659-91277678 MS.gene54508:CDS 15.0%
!! AAAAATATGTATTTCCTGTT+TGG - chr7.4:91276188-91276207 None:intergenic 20.0%
!! TAATCATAATGTGTAAATTG+TGG + chr7.4:91275933-91275952 MS.gene54508:intron 20.0%
!! TATTACATTATGTGAATATG+TGG + chr7.4:91275998-91276017 MS.gene54508:intron 20.0%
!! TTTACACATTATGATTATGA+TGG - chr7.4:91275930-91275949 None:intergenic 20.0%
!!! CTTAAAGCGATATTTTATAT+TGG + chr7.4:91277658-91277677 MS.gene54508:CDS 20.0%
!!! GAGATGATTTTTCATATTTA+TGG + chr7.4:91276340-91276359 MS.gene54508:intron 20.0%
!!! GTAAAAATTAAGTTGTATTC+TGG + chr7.4:91276297-91276316 MS.gene54508:intron 20.0%
! AATATATTATCAACTCGTGA+AGG + chr7.4:91275543-91275562 MS.gene54508:CDS 25.0%
! ATATATTATCAACTCGTGAA+GGG + chr7.4:91275544-91275563 MS.gene54508:CDS 25.0%
! CGTATAACTATGTCATTATA+TGG - chr7.4:91277478-91277497 None:intergenic 25.0%
! GAAGAAAGACAAAAAATTGA+TGG + chr7.4:91276523-91276542 MS.gene54508:intron 25.0%
! GAAGAAATAATCAAACTCTA+CGG - chr7.4:91275897-91275916 None:intergenic 25.0%
! GTAATAATGAACTCATTTCT+TGG - chr7.4:91275984-91276003 None:intergenic 25.0%
!! GAACATGTATGTTATTTATG+TGG - chr7.4:91277200-91277219 None:intergenic 25.0%
!! GTTTTTGATCTATCAATACA+TGG + chr7.4:91276809-91276828 MS.gene54508:intron 25.0%
!! TACAGTTTCTAAAAAGCTAT+TGG + chr7.4:91276090-91276109 MS.gene54508:intron 25.0%
!!! ACGAGTTGATAATATATTGT+TGG - chr7.4:91275541-91275560 None:intergenic 25.0%
!!! TTATACAGTAACTTGCTTAT+AGG + chr7.4:91276130-91276149 MS.gene54508:intron 25.0%
AAAAGGGTCAACACTATTAA+AGG + chr7.4:91276894-91276913 MS.gene54508:intron 30.0%
AAGACAAAAAATTGATGGAG+AGG + chr7.4:91276528-91276547 MS.gene54508:intron 30.0%
ACTATGTCATTATATGGAAG+TGG - chr7.4:91277472-91277491 None:intergenic 30.0%
ATATAACTCAGATTTGTGCT+GGG - chr7.4:91275492-91275511 None:intergenic 30.0%
GGTTTAATAGAATGAGCATT+TGG - chr7.4:91275813-91275832 None:intergenic 30.0%
TAATGTTATGATTCAGCTTG+AGG + chr7.4:91275701-91275720 MS.gene54508:intron 30.0%
TGACATTATTAAAGCAACAG+AGG + chr7.4:91276566-91276585 MS.gene54508:intron 30.0%
TGTGTAAATTGTGGTTTAGT+TGG + chr7.4:91275942-91275961 MS.gene54508:intron 30.0%
TTTGACATGAGATATTGCAT+TGG + chr7.4:91276591-91276610 MS.gene54508:intron 30.0%
! TGACATAATTCATGTTTCTG+TGG + chr7.4:91277498-91277517 MS.gene54508:CDS 30.0%
! TGATTTTATCAATGCAGAGT+TGG + chr7.4:91277288-91277307 MS.gene54508:CDS 30.0%
AACAAGAGCAATAACCAAAC+AGG + chr7.4:91276171-91276190 MS.gene54508:intron 35.0%
ACTATAGTTGCTGGAACTAT+TGG + chr7.4:91277074-91277093 MS.gene54508:intron 35.0%
AGCGTGAAATATGAAAATCC+AGG + chr7.4:91275342-91275361 MS.gene54508:CDS 35.0%
AGTGATGACAAAAATTCTCC+AGG - chr7.4:91277394-91277413 None:intergenic 35.0%
ATAGCCGTGAAGTTTCTTTA+AGG - chr7.4:91276673-91276692 None:intergenic 35.0%
ATATCTTGCTAAACTCTGAG+TGG + chr7.4:91276991-91277010 MS.gene54508:intron 35.0%
ATCTATCAATACATGGAGAG+AGG + chr7.4:91276816-91276835 MS.gene54508:intron 35.0%
ATGAGATATTGCATTGGAAC+AGG + chr7.4:91276597-91276616 MS.gene54508:intron 35.0%
CAACTCAATCGAACATAGTT+GGG + chr7.4:91275379-91275398 MS.gene54508:CDS 35.0%
CATAAAGCTTCACGATATGT+CGG - chr7.4:91276764-91276783 None:intergenic 35.0%
CATATAACTCAGATTTGTGC+TGG - chr7.4:91275493-91275512 None:intergenic 35.0%
CTGAAACTCTCATCAAAAGA+TGG - chr7.4:91276708-91276727 None:intergenic 35.0%
GAATTGTAAGTCACACTTTG+TGG + chr7.4:91276230-91276249 MS.gene54508:intron 35.0%
GATTGGATGAATCGTATTGA+AGG - chr7.4:91277052-91277071 None:intergenic 35.0%
GTGATGACAAAAATTCTCCA+GGG - chr7.4:91277393-91277412 None:intergenic 35.0%
GTTGCCTTAAAGAAACTTCA+CGG + chr7.4:91276666-91276685 MS.gene54508:intron 35.0%
TGCACTGAAATTTCACTCAA+AGG - chr7.4:91277619-91277638 None:intergenic 35.0%
TTAAACTTGAGCTCGAGAAA+TGG - chr7.4:91275760-91275779 None:intergenic 35.0%
! AAGTGCGATGTGTATAGTTT+TGG + chr7.4:91277334-91277353 MS.gene54508:CDS 35.0%
! AGAAGATGATGATGAATACG+AGG + chr7.4:91276425-91276444 MS.gene54508:intron 35.0%
! ATGCTCTTCAACTGATTCAT+TGG - chr7.4:91275733-91275752 None:intergenic 35.0%
! GAAGATGATGATGAATACGA+GGG + chr7.4:91276426-91276445 MS.gene54508:intron 35.0%
! TCAAGTTTAAGACTCTGACA+TGG + chr7.4:91275770-91275789 MS.gene54508:intron 35.0%
!! AGCATATGGAAGTGTTTACA+AGG + chr7.4:91276620-91276639 MS.gene54508:intron 35.0%
!! TTATAGGCAAAAGTGTCTTG+AGG + chr7.4:91276146-91276165 MS.gene54508:intron 35.0%
!!! GGTTTTACAGTTGAGTTGAA+GGG + chr7.4:91276362-91276381 MS.gene54508:intron 35.0%
!!! GTAAGTTGATCTTCGCTTTT+CGG - chr7.4:91275516-91275535 None:intergenic 35.0%
CGACATATCGTGAAGCTTTA+TGG + chr7.4:91276762-91276781 MS.gene54508:intron 40.0%
GATACATCTCTATGCACGAT+TGG - chr7.4:91276963-91276982 None:intergenic 40.0%
GCAACTCAATCGAACATAGT+TGG + chr7.4:91275378-91275397 MS.gene54508:CDS 40.0%
GGAATTCAAGTGGAGGAAAA+GGG + chr7.4:91276878-91276897 MS.gene54508:intron 40.0%
GTTCCTAGGAAAATGTGTCT+TGG - chr7.4:91275847-91275866 None:intergenic 40.0%
TACAAGGCACAATTACCAAG+TGG + chr7.4:91276636-91276655 MS.gene54508:intron 40.0%
TATATGGAAGTGGAAGACGT+TGG - chr7.4:91277462-91277481 None:intergenic 40.0%
TCACTCAAAGGAATGCTTGA+TGG - chr7.4:91277607-91277626 None:intergenic 40.0%
TCCAATCGAACTATAGTTGC+TGG + chr7.4:91277065-91277084 MS.gene54508:intron 40.0%
TCCAGCAACTATAGTTCGAT+TGG - chr7.4:91277069-91277088 None:intergenic 40.0%
TGGAATTCAAGTGGAGGAAA+AGG + chr7.4:91276877-91276896 MS.gene54508:intron 40.0%
TGGATCATGCTCTTTCTTGA+AGG + chr7.4:91276018-91276037 MS.gene54508:intron 40.0%
TGTAAGTCACACTTTGTGGT+TGG + chr7.4:91276234-91276253 MS.gene54508:intron 40.0%
TGTGTCTTGGATGTTGAACA+TGG - chr7.4:91275834-91275853 None:intergenic 40.0%
TTCATTCACCGCCATAGTAT+AGG - chr7.4:91277314-91277333 None:intergenic 40.0%
TTCTTCCTGAACCTCAAACT+GGG - chr7.4:91275601-91275620 None:intergenic 40.0%
TTTCCTCCACTTGAATTCCA+CGG - chr7.4:91276877-91276896 None:intergenic 40.0%
TTTCTTCCTGAACCTCAAAC+TGG - chr7.4:91275602-91275621 None:intergenic 40.0%
! ATTTTCCTAGGAACACAAGG+AGG + chr7.4:91275853-91275872 MS.gene54508:intron 40.0%
! CACATTTTCCTAGGAACACA+AGG + chr7.4:91275850-91275869 MS.gene54508:intron 40.0%
! CATAATTCTGCCTCTTTTGC+CGG + chr7.4:91275425-91275444 MS.gene54508:CDS 40.0%
! CATCCAAGACACATTTTCCT+AGG + chr7.4:91275841-91275860 MS.gene54508:intron 40.0%
! GATTTCTTTTCCGGCAAAAG+AGG - chr7.4:91275438-91275457 None:intergenic 40.0%
! TGGAACCAGGATTTCTTTTC+CGG - chr7.4:91275447-91275466 None:intergenic 40.0%
! TTTTCCTAGGAACACAAGGA+GGG + chr7.4:91275854-91275873 MS.gene54508:intron 40.0%
! TTTTGCCGGAAAAGAAATCC+TGG + chr7.4:91275439-91275458 MS.gene54508:CDS 40.0%
!! AATGCTTGATGGTGTAAGCT+CGG - chr7.4:91277596-91277615 None:intergenic 40.0%
!! TTACAGTTGAGTTGAAGGGA+TGG + chr7.4:91276366-91276385 MS.gene54508:intron 40.0%
!!! GGGTTTTACAGTTGAGTTGA+AGG + chr7.4:91276361-91276380 MS.gene54508:intron 40.0%
AACCTCAAACTGGGTCCTAT+TGG - chr7.4:91275592-91275611 None:intergenic 45.0%
ATCGAACATAGTTGGGCTGA+TGG + chr7.4:91275386-91275405 MS.gene54508:CDS 45.0%
CAGGCTAGTGTTTGTGACTT+TGG + chr7.4:91277014-91277033 MS.gene54508:intron 45.0%
CTATTGGCAGATTCGATGGA+AGG - chr7.4:91275576-91275595 None:intergenic 45.0%
CTTCCATCGAATCTGCCAAT+AGG + chr7.4:91275574-91275593 MS.gene54508:CDS 45.0%
GGAAAAGAAATCCTGGTTCC+AGG + chr7.4:91275446-91275465 MS.gene54508:CDS 45.0%
GTTGCAGAACAGAACTTTCC+TGG - chr7.4:91275363-91275382 None:intergenic 45.0%
TAGAAGCCGTGGAATTCAAG+TGG + chr7.4:91276868-91276887 MS.gene54508:intron 45.0%
TGTAGTCGCACTTGAAACTC+TGG + chr7.4:91277357-91277376 MS.gene54508:CDS 45.0%
! AGAGTTGGCCTATACTATGG+CGG + chr7.4:91277303-91277322 MS.gene54508:CDS 45.0%
! GAAGCATTAGCAAAGCTACC+TGG - chr7.4:91275467-91275486 None:intergenic 45.0%
! GTATGATGATGTAGAAGCCG+TGG + chr7.4:91276857-91276876 MS.gene54508:intron 45.0%
! TGCAGAGTTGGCCTATACTA+TGG + chr7.4:91277300-91277319 MS.gene54508:CDS 45.0%
! TGCATTGGAACAGGAGCATA+TGG + chr7.4:91276606-91276625 MS.gene54508:intron 45.0%
AAGCCGTGGAATTCAAGTGG+AGG + chr7.4:91276871-91276890 MS.gene54508:intron 50.0%
AAGGCAACAACCTTGCCACT+TGG - chr7.4:91276654-91276673 None:intergenic 50.0%
ACTTCACGGCTATGAAGCAG+AGG + chr7.4:91276680-91276699 MS.gene54508:intron 50.0%
AGGAGGGTAAGGAGGAAGTT+TGG + chr7.4:91275870-91275889 MS.gene54508:intron 50.0%
CTAGGAACACAAGGAGGGTA+AGG + chr7.4:91275859-91275878 MS.gene54508:intron 50.0%
CTTACCCTCCTTGTGTTCCT+AGG - chr7.4:91275861-91275880 None:intergenic 50.0%
CTTGCTAAACTCTGAGTGGC+AGG + chr7.4:91276995-91277014 MS.gene54508:intron 50.0%
GGCACAATTACCAAGTGGCA+AGG + chr7.4:91276641-91276660 MS.gene54508:intron 50.0%
GGTCCTATTGGCAGATTCGA+TGG - chr7.4:91275580-91275599 None:intergenic 50.0%
GTCGCACTTGAAACTCTGGT+TGG + chr7.4:91277361-91277380 MS.gene54508:CDS 50.0%
TAGCAAAGCTACCTGGAACC+AGG - chr7.4:91275460-91275479 None:intergenic 50.0%
TGCCAATAGGACCCAGTTTG+AGG + chr7.4:91275587-91275606 MS.gene54508:CDS 50.0%
TGTGACACACGTTCCATTGC+TGG - chr7.4:91277562-91277581 None:intergenic 50.0%
! TAGGACCCAGTTTGAGGTTC+AGG + chr7.4:91275593-91275612 MS.gene54508:CDS 50.0%
ACTCTGGTTGGAAGACACCC+TGG + chr7.4:91277373-91277392 MS.gene54508:CDS 55.0%
GGAACACAAGGAGGGTAAGG+AGG + chr7.4:91275862-91275881 MS.gene54508:intron 55.0%
TCCATTGCTGGTCGAGAACG+AGG - chr7.4:91277550-91277569 None:intergenic 55.0%
TCCTCGTTCTCGACCAGCAA+TGG + chr7.4:91277546-91277565 MS.gene54508:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 91275282 91277690 91275282 ID=MS.gene54508
chr7.4 mRNA 91275282 91277690 91275282 ID=MS.gene54508.t1;Parent=MS.gene54508
chr7.4 exon 91275282 91275623 91275282 ID=MS.gene54508.t1.exon1;Parent=MS.gene54508.t1
chr7.4 CDS 91275282 91275623 91275282 ID=cds.MS.gene54508.t1;Parent=MS.gene54508.t1
chr7.4 exon 91277265 91277690 91277265 ID=MS.gene54508.t1.exon2;Parent=MS.gene54508.t1
chr7.4 CDS 91277265 91277690 91277265 ID=cds.MS.gene54508.t1;Parent=MS.gene54508.t1
Gene Sequence

>MS.gene54508

ATGATTGAAAATGTTGAAGCATTGTTGTCACAAGTTGAGAATTTGAAAACTCAGATTGATAGCGTGAAATATGAAAATCCAGGAAAGTTCTGTTCTGCAACTCAATCGAACATAGTTGGGCTGATGGATTTAATCGTTCTGTTCATAATTCTGCCTCTTTTGCCGGAAAAGAAATCCTGGTTCCAGGTAGCTTTGCTAATGCTTCATCCCAGCACAAATCTGAGTTATATGCCGAAAAGCGAAGATCAACTTACGACCAACAATATATTATCAACTCGTGAAGGGATAACTCCTTCCATCGAATCTGCCAATAGGACCCAGTTTGAGGTTCAGGAAGAAAATGTAAGCTTTATTATTTGAAAGTCATTTCAACAATTCGTAGACATTGTAAATTTGTAATGTTGTGATTTTCTTGTAATTAATGTTATGATTCAGCTTGAGGAAAAATCCAATGAATCAGTTGAAGAGCATAAATCCATTTCTCGAGCTCAAGTTTAAGACTCTGACATGGTCACTCAGAATGCTGTACCAAATGCTCATTCTATTAAACCATGTTCAACATCCAAGACACATTTTCCTAGGAACACAAGGAGGGTAAGGAGGAAGTTTGGTCCGTAGAGTTTGATTATTTCTTCAAGAGTTGCACCATCATAATCATAATGTGTAAATTGTGGTTTAGTTGGTATATATTTTGCTGCACCAAGAAATGAGTTCATTATTACATTATGTGAATATGTGGATCATGCTCTTTCTTGAAGGATGATTTTGTTTTTATTTATTGGAGATATATTACTTCAATAACTGAAAATACAGTTTCTAAAAAGCTATTGGCATTAATCAGTTAAATATTATACAGTAACTTGCTTATAGGCAAAAGTGTCTTGAGGATAACAAGAGCAATAACCAAACAGGAAATACATATTTTTTAACTAGCAATTTGAAGTATGAGAATTGTAAGTCACACTTTGTGGTTGGTTTAAGTAAAACTCTTGTTAAAAAGAGTGTTACAACTCTTGTAAAAATTAAGTTGTATTCTGGGTTTGAAGATGAAGAAGTGAGAGATGATTTTTCATATTTATGGGTTTTACAGTTGAGTTGAAGGGATGGTTTTTTTTCTTTCTTTCTTCTTTTGAGTTTGTGTTAAGAAGATGATGATGAATACGAGGGAACAAGATGAAGAAAGATAAAATAAATTTTAAATTACATATTTAGTCTCAGTGTATGAAGACGACAAAGAAGATGAAGAAAGACAAAAAATTGATGGAGAGGACTCAACAAATTTGATGACATTATTAAAGCAACAGAGGACTTTGACATGAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCAAGTGGCAAGGTTGTTGCCTTAAAGAAACTTCACGGCTATGAAGCAGAGGTTCCATCTTTTGATGAGAGTTTCAGAAATGAAGTGAAAATATTATCAAAAATAAAGCACCGACATATCGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAGTCATGTTTTTGATCTATCAATACATGGAGAGAGGAAGCTTATTCTCTGTCTTGTATGATGATGTAGAAGCCGTGGAATTCAAGTGGAGGAAAAGGGTCAACACTATTAAAGGAGTTGCATTTGCTCTATCTTATCTTCATCATGATTGCACTGCTCCAATCGTGCATAGAGATGTATCTACTAGCAATATCTTGCTAAACTCTGAGTGGCAGGCTAGTGTTTGTGACTTTGGCACAGCACGACTCCTTCAATACGATTCATCCAATCGAACTATAGTTGCTGGAACTATTGGATATATAGCTCCTCGTAAATTAATTATTGATATTTTTTCTTTCTTGTTCTGTTTTTCTGTTCTTCATTTTTATATGATGCACAACATGCATATTTATAATCCACATAAATAACATACATGTTCATTAGTTTTGCATGCTAAATAGTAGTTTTCAATTATTTTCTTTAGATTCTTTTAAATAATACTCATAGTGATTTTATCAATGCAGAGTTGGCCTATACTATGGCGGTGAATGAAAAGTGCGATGTGTATAGTTTTGGTGTAGTCGCACTTGAAACTCTGGTTGGAAGACACCCTGGAGAATTTTTGTCATCACTTCAATCAACATCGACAAGAAGTGTCAAACTATGTCAAGTATTAGACCAACGTCTTCCACTTCCATATAATGACATAGTTATACGTGACATAATTCATGTTTCTGTGGTAGCATTTACATGCTTAAATGTTAATCCTCGTTCTCGACCAGCAATGGAACGTGTGTCACAAAGTTTTATCACCGAGCTTACACCATCAAGCATTCCTTTGAGTGAAATTTCAGTGCAGCAACTAATGAGTGAAGAACTTAAAGCGATATTTTATATTGGGAACCCTTGA
Protein sequence

>MS.gene54508.t1

MIENVEALLSQVENLKTQIDSVKYENPGKFCSATQSNIVGLMDLIVLFIILPLLPEKKSWFQVALLMLHPSTNLSYMPKSEDQLTTNNILSTREGITPSIESANRTQFEVQEENILLNNTHSDFINAELAYTMAVNEKCDVYSFGVVALETLVGRHPGEFLSSLQSTSTRSVKLCQVLDQRLPLPYNDIVIRDIIHVSVVAFTCLNVNPRSRPAMERVSQSFITELTPSSIPLSEISVQQLMSEELKAIFYIGNP