Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54546.t1 | XP_003588480.1 | 94.8 | 153 | 8 | 0 | 28 | 180 | 29 | 181 | 2.80E-61 | 245 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54546.t1 | Q9FNE9 | 69.7 | 155 | 45 | 2 | 27 | 180 | 34 | 187 | 5.2e-40 | 165.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54546.t1 | G7I3E6 | 94.8 | 153 | 8 | 0 | 28 | 180 | 29 | 181 | 2.0e-61 | 245.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene54546.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54546.t1 | MTR_1g007670 | 96.133 | 181 | 6 | 1 | 1 | 180 | 1 | 181 | 1.27e-124 | 355 |
| MS.gene54546.t1 | MTR_1g007700 | 60.894 | 179 | 36 | 5 | 1 | 179 | 236 | 380 | 3.78e-59 | 193 |
| MS.gene54546.t1 | MTR_3g095840 | 52.174 | 161 | 74 | 2 | 21 | 179 | 69 | 228 | 7.80e-46 | 155 |
| MS.gene54546.t1 | MTR_3g095830 | 53.846 | 52 | 24 | 0 | 21 | 72 | 56 | 107 | 8.87e-17 | 72.8 |
| MS.gene54546.t1 | MTR_1g007690 | 82.051 | 39 | 7 | 0 | 144 | 182 | 1 | 39 | 5.11e-13 | 65.5 |
| MS.gene54546.t1 | MTR_3g027795 | 55.556 | 63 | 26 | 2 | 119 | 179 | 73 | 135 | 7.20e-13 | 63.5 |
| MS.gene54546.t1 | MTR_3g027790 | 80.556 | 36 | 7 | 0 | 144 | 179 | 1 | 36 | 3.42e-12 | 60.5 |
| MS.gene54546.t1 | MTR_5g010300 | 36.765 | 68 | 41 | 1 | 21 | 88 | 238 | 303 | 1.27e-11 | 62.8 |
| MS.gene54546.t1 | MTR_5g010300 | 36.765 | 68 | 41 | 1 | 21 | 88 | 238 | 303 | 1.32e-11 | 62.8 |
| MS.gene54546.t1 | MTR_5g010300 | 36.765 | 68 | 41 | 1 | 21 | 88 | 238 | 303 | 1.43e-11 | 62.8 |
| MS.gene54546.t1 | MTR_5g010300 | 36.765 | 68 | 41 | 1 | 21 | 88 | 238 | 303 | 1.60e-11 | 62.8 |
| MS.gene54546.t1 | MTR_3g088665 | 41.304 | 46 | 27 | 0 | 27 | 72 | 685 | 730 | 5.24e-11 | 60.8 |
| MS.gene54546.t1 | MTR_6g007650 | 44.898 | 49 | 27 | 0 | 24 | 72 | 1242 | 1290 | 9.23e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54546.t1 | AT5G24330 | 64.516 | 155 | 53 | 2 | 27 | 180 | 34 | 187 | 7.05e-61 | 193 |
| MS.gene54546.t1 | AT5G09790 | 44.937 | 158 | 82 | 2 | 25 | 180 | 64 | 218 | 1.11e-41 | 144 |
| MS.gene54546.t1 | AT5G09790 | 45.223 | 157 | 82 | 2 | 25 | 180 | 64 | 217 | 3.52e-41 | 142 |
| MS.gene54546.t1 | AT1G63490 | 30.612 | 98 | 66 | 1 | 6 | 103 | 220 | 315 | 7.07e-12 | 63.5 |
| MS.gene54546.t1 | AT1G63490 | 30.612 | 98 | 66 | 1 | 6 | 103 | 220 | 315 | 7.41e-12 | 63.5 |
| MS.gene54546.t1 | AT3G01460 | 46.939 | 49 | 26 | 0 | 24 | 72 | 1286 | 1334 | 5.16e-11 | 61.2 |
Find 46 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATACATTTGGGGATTT+TGG | 0.088459 | 1.3:-11831058 | None:intergenic |
| CTTGAAGAAATCAATAATTT+TGG | 0.167292 | 1.3:-11831352 | None:intergenic |
| ATTTGCCGGAGTTGCATTTC+TGG | 0.190452 | 1.3:-11830915 | None:intergenic |
| GCATCCCTTGGCGCCATTCC+AGG | 0.276840 | 1.3:-11832127 | None:intergenic |
| CGCAAAGAAGCAACTTAGTT+GGG | 0.323658 | 1.3:-11830939 | None:intergenic |
| CAACTTAGTTGGGGATTTGC+CGG | 0.329908 | 1.3:-11830929 | None:intergenic |
| GGGCAAAACCAAGAGGATTT+AGG | 0.342107 | 1.3:-11831018 | None:intergenic |
| CTCCTCTTCAAATCATCATT+TGG | 0.347535 | 1.3:-11832028 | None:intergenic |
| GTCATCATCGTTGAAGGTTG+TGG | 0.391049 | 1.3:-11830881 | None:intergenic |
| GAGAAAGCGGAGTAGTAGTT+TGG | 0.397233 | 1.3:+11831967 | MS.gene54546:CDS |
| TGGGAGCTGGAATTCTTCTT+CGG | 0.410162 | 1.3:-11830849 | None:intergenic |
| CTTCTGTACCTAAATCCTCT+TGG | 0.418430 | 1.3:+11831010 | MS.gene54546:CDS |
| ACGTTCAAGAACAGGAGAAT+TGG | 0.452094 | 1.3:-11832149 | None:intergenic |
| ATTCCTCCACGTTCAAGAAC+AGG | 0.452190 | 1.3:-11832157 | None:intergenic |
| TCGCAAAGAAGCAACTTAGT+TGG | 0.454512 | 1.3:-11830940 | None:intergenic |
| AAAGCGGAGTAGTAGTTTGG+TGG | 0.462327 | 1.3:+11831970 | MS.gene54546:CDS |
| GGCAGAGTCTAACACTTAGA+AGG | 0.467431 | 1.3:-11834642 | None:intergenic |
| CTTTGCGACAATTGCGACAA+CGG | 0.472963 | 1.3:+11830955 | MS.gene54546:CDS |
| CGCGTTGACTGCTACTAAAA+CGG | 0.476912 | 1.3:+11832078 | MS.gene54546:CDS |
| TAGGTGTGAGGCAGAAGAGA+TGG | 0.477113 | 1.3:-11830981 | None:intergenic |
| CAAGAGGATTTAGGTACAGA+AGG | 0.492170 | 1.3:-11831009 | None:intergenic |
| TTAGGTACAGAAGGGAGGAT+AGG | 0.500711 | 1.3:-11831000 | None:intergenic |
| GACGTCGTCATCATCGTTGA+AGG | 0.512130 | 1.3:-11830887 | None:intergenic |
| GCATCTAAGATTCTGAATCA+TGG | 0.512650 | 1.3:+11831393 | MS.gene54546:CDS |
| ATTAGAACAGATGGCGTCGT+TGG | 0.518768 | 1.3:+11832051 | MS.gene54546:CDS |
| ATTCAAAGAAGAAGAGAAAG+CGG | 0.540362 | 1.3:+11831954 | MS.gene54546:CDS |
| ACAGGAGAATTGGCATCCCT+TGG | 0.541184 | 1.3:-11832139 | None:intergenic |
| TGGGGTTGTGAGAGCAGGAA+GGG | 0.547853 | 1.3:-11831038 | None:intergenic |
| AATGAGCTTACATACATGCC+TGG | 0.552496 | 1.3:+11832109 | MS.gene54546:CDS |
| CATGCCTGGAATGGCGCCAA+GGG | 0.555292 | 1.3:+11832123 | MS.gene54546:CDS |
| ACATGCCTGGAATGGCGCCA+AGG | 0.581749 | 1.3:+11832122 | MS.gene54546:CDS |
| GGAATTCTTCTTCGGCGAAG+TGG | 0.581802 | 1.3:-11830841 | None:intergenic |
| GCTTACATACATGCCTGGAA+TGG | 0.584838 | 1.3:+11832114 | MS.gene54546:CDS |
| TCGGCGAAGTGGTGAAGCCA+TGG | 0.586776 | 1.3:-11830830 | None:intergenic |
| CAGAATCTTAGATGCATCAA+CGG | 0.589395 | 1.3:-11831385 | None:intergenic |
| TGCCAAATGATGATTTGAAG+AGG | 0.592036 | 1.3:+11832026 | MS.gene54546:CDS |
| GAAGAGGAGATTAGAACAGA+TGG | 0.593117 | 1.3:+11832042 | MS.gene54546:CDS |
| TGAAAGGATGCATACATTTG+GGG | 0.604501 | 1.3:-11831065 | None:intergenic |
| TTGGGGTTGTGAGAGCAGGA+AGG | 0.612150 | 1.3:-11831039 | None:intergenic |
| GCAAAGAAGCAACTTAGTTG+GGG | 0.617673 | 1.3:-11830938 | None:intergenic |
| AAGAGGATTTAGGTACAGAA+GGG | 0.621884 | 1.3:-11831008 | None:intergenic |
| GTTTGCCAGAAATGCAACTC+CGG | 0.639299 | 1.3:+11830910 | MS.gene54546:CDS |
| AGGATTTAGGTACAGAAGGG+AGG | 0.647659 | 1.3:-11831005 | None:intergenic |
| CAGAAGGGAGGATAGGTGTG+AGG | 0.654698 | 1.3:-11830993 | None:intergenic |
| GCAGGAAGGGCAAAACCAAG+AGG | 0.707902 | 1.3:-11831025 | None:intergenic |
| AGAGTCTAACACTTAGAAGG+CGG | 0.717515 | 1.3:-11834639 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTCTTTTTTTTGT+AGG | + | chr1.3:11833155-11833174 | MS.gene54546:intron | 10.0% |
| !! | AAAAAAGAAAATTAAAAGTC+AGG | - | chr1.3:11833151-11833170 | None:intergenic | 15.0% |
| !! | AATAACAACTTATTGTAATA+AGG | + | chr1.3:11834035-11834054 | MS.gene54546:intron | 15.0% |
| !! | AATATAATATAGTGAGAAAT+TGG | + | chr1.3:11833456-11833475 | MS.gene54546:intron | 15.0% |
| !!! | TATTATTGTCAAATCTTTTA+TGG | - | chr1.3:11833203-11833222 | None:intergenic | 15.0% |
| !! | ACAATAATAACAGAATATGT+TGG | + | chr1.3:11833214-11833233 | MS.gene54546:intron | 20.0% |
| !! | ATAAAAGTTAGTCAAATCAT+AGG | + | chr1.3:11834446-11834465 | MS.gene54546:intron | 20.0% |
| !! | ATGAAATGAAATCAAATGAA+AGG | - | chr1.3:11831084-11831103 | None:intergenic | 20.0% |
| !! | CAGAGAATAAAATTTGAAAA+AGG | - | chr1.3:11833404-11833423 | None:intergenic | 20.0% |
| !! | TAATGTTTAGAGAATTTGAT+TGG | + | chr1.3:11831455-11831474 | MS.gene54546:intron | 20.0% |
| !! | TATACATAAAAATATCCGTT+TGG | - | chr1.3:11834259-11834278 | None:intergenic | 20.0% |
| !! | TGAATTATCATGTATAACTA+AGG | + | chr1.3:11834381-11834400 | MS.gene54546:intron | 20.0% |
| !! | TTAATTGAAAAATTCTACTG+TGG | + | chr1.3:11832315-11832334 | MS.gene54546:intron | 20.0% |
| !! | TTCATCTTAAAGAATGTTAT+CGG | + | chr1.3:11833483-11833502 | MS.gene54546:intron | 20.0% |
| !!! | ACTAACTTTTATCTTCTTAT+TGG | - | chr1.3:11834438-11834457 | None:intergenic | 20.0% |
| !!! | ATGTAATTTTTAGATACTTC+TGG | + | chr1.3:11834217-11834236 | MS.gene54546:intron | 20.0% |
| !!! | CTTGAAGAAATCAATAATTT+TGG | - | chr1.3:11831355-11831374 | None:intergenic | 20.0% |
| !!! | GTTTGTATATATTTTTTCTC+AGG | + | chr1.3:11832969-11832988 | MS.gene54546:intron | 20.0% |
| !!! | TTAGGTATTATATTGTTGTT+AGG | + | chr1.3:11832214-11832233 | MS.gene54546:intron | 20.0% |
| ! | AAAAAAGAAAAGGAAGTTGT+TGG | + | chr1.3:11831997-11832016 | MS.gene54546:CDS | 25.0% |
| ! | AAATCAAATACAGCACAAAA+AGG | + | chr1.3:11834469-11834488 | MS.gene54546:intron | 25.0% |
| ! | AAGGAAATGATATCTTAACA+GGG | + | chr1.3:11834054-11834073 | MS.gene54546:intron | 25.0% |
| ! | AATATAGCACGTTTCATTAA+TGG | + | chr1.3:11833349-11833368 | MS.gene54546:intron | 25.0% |
| ! | AATTAGACAAAATGTTCAGT+TGG | - | chr1.3:11834003-11834022 | None:intergenic | 25.0% |
| ! | AGTATTATTGATGCTCAAAA+AGG | + | chr1.3:11834328-11834347 | MS.gene54546:intron | 25.0% |
| ! | GAATCAACTAATAGATTTAG+AGG | - | chr1.3:11834104-11834123 | None:intergenic | 25.0% |
| ! | GTATTATTGATGCTCAAAAA+GGG | + | chr1.3:11834329-11834348 | MS.gene54546:intron | 25.0% |
| ! | TAAGGAAATGATATCTTAAC+AGG | + | chr1.3:11834053-11834072 | MS.gene54546:intron | 25.0% |
| ! | TAATTATCAATTGCTACTAC+TGG | - | chr1.3:11833578-11833597 | None:intergenic | 25.0% |
| ! | TGCAATACTGAAGTATAAAA+TGG | + | chr1.3:11832796-11832815 | MS.gene54546:intron | 25.0% |
| ! | TTGAAAAAGGAAGAAACATA+CGG | - | chr1.3:11833391-11833410 | None:intergenic | 25.0% |
| ! | TTTAATAACGTGATTAGATC+TGG | + | chr1.3:11831232-11831251 | MS.gene54546:intron | 25.0% |
| !! | ATAACTTTTGTAAGACTGTT+TGG | - | chr1.3:11831848-11831867 | None:intergenic | 25.0% |
| !! | ATTTTATTCTCTGCATATGT+AGG | + | chr1.3:11833411-11833430 | MS.gene54546:intron | 25.0% |
| !! | TACAATAAGTTGTTATTGAC+AGG | - | chr1.3:11834032-11834051 | None:intergenic | 25.0% |
| !! | TATGTTTTCACAAGCTATTA+TGG | + | chr1.3:11831626-11831645 | MS.gene54546:intron | 25.0% |
| !!! | AAAATTGTTGTTTTGTCCAT+CGG | + | chr1.3:11834167-11834186 | MS.gene54546:intron | 25.0% |
| !!! | ATAATTTTGGTTTGTACAAG+AGG | - | chr1.3:11831342-11831361 | None:intergenic | 25.0% |
| !!! | ATGTAGACTTTTTGAAGAAT+CGG | + | chr1.3:11833239-11833258 | MS.gene54546:intron | 25.0% |
| !!! | CTTAATTGAGTTTGTTAGTT+AGG | + | chr1.3:11832196-11832215 | MS.gene54546:intron | 25.0% |
| !!! | TATTGTTGTTAGGATACTTT+TGG | + | chr1.3:11832224-11832243 | MS.gene54546:intron | 25.0% |
| !!! | TGTTTTGTGTGTTTTAGAAA+GGG | + | chr1.3:11833540-11833559 | MS.gene54546:intron | 25.0% |
| !!! | TTTTAATTTACGATGCAAGT+AGG | + | chr1.3:11834302-11834321 | MS.gene54546:intron | 25.0% |
| AATGAAAGGATGCATACATT+TGG | - | chr1.3:11831070-11831089 | None:intergenic | 30.0% | |
| ACTCAAGTTAAACAGATTTC+AGG | - | chr1.3:11833635-11833654 | None:intergenic | 30.0% | |
| AGGTTGTATTATGACTACAA+TGG | + | chr1.3:11833961-11833980 | MS.gene54546:intron | 30.0% | |
| ATGAAAGGATGCATACATTT+GGG | - | chr1.3:11831069-11831088 | None:intergenic | 30.0% | |
| ATTCAAAGAAGAAGAGAAAG+CGG | + | chr1.3:11831954-11831973 | MS.gene54546:CDS | 30.0% | |
| CATCTTAGCATTACATGAAA+AGG | - | chr1.3:11833715-11833734 | None:intergenic | 30.0% | |
| CATTTCAATACGTCAATGTT+TGG | + | chr1.3:11831101-11831120 | MS.gene54546:intron | 30.0% | |
| CTATATTGCTACGTTTATCT+GGG | - | chr1.3:11833336-11833355 | None:intergenic | 30.0% | |
| CTCAAGTTAAACAGATTTCA+GGG | - | chr1.3:11833634-11833653 | None:intergenic | 30.0% | |
| GCAAATAGAGATATAGCAAA+GGG | + | chr1.3:11833934-11833953 | MS.gene54546:intron | 30.0% | |
| GTTTAGAGAATTTGATTGGA+TGG | + | chr1.3:11831459-11831478 | MS.gene54546:intron | 30.0% | |
| TGAGACATTGAATTGATTGT+TGG | + | chr1.3:11832441-11832460 | MS.gene54546:intron | 30.0% | |
| TGCAAATAGAGATATAGCAA+AGG | + | chr1.3:11833933-11833952 | MS.gene54546:intron | 30.0% | |
| TGGTGGTTTCAAAAAAGAAA+AGG | + | chr1.3:11831987-11832006 | MS.gene54546:CDS | 30.0% | |
| TGTTGAGTTATGTTTGTATG+AGG | + | chr1.3:11832287-11832306 | MS.gene54546:intron | 30.0% | |
| TTGTTTATGATCCTGTAGAA+GGG | + | chr1.3:11833070-11833089 | MS.gene54546:intron | 30.0% | |
| ! | ACTTTGTTGCCTTTATTTCT+AGG | - | chr1.3:11832775-11832794 | None:intergenic | 30.0% |
| ! | AGTTGATTCAATTGTATCTC+TGG | + | chr1.3:11834115-11834134 | MS.gene54546:intron | 30.0% |
| ! | TTAGGTTGTCAACACTAATT+AGG | + | chr1.3:11832552-11832571 | MS.gene54546:intron | 30.0% |
| !! | AGTTTATACTTTTTGAGAGC+TGG | + | chr1.3:11832610-11832629 | MS.gene54546:intron | 30.0% |
| !! | CTACAAACTAGTTTGGATTT+TGG | + | chr1.3:11832824-11832843 | MS.gene54546:intron | 30.0% |
| !! | CTATTTTTCACAACCTATTG+TGG | + | chr1.3:11831697-11831716 | MS.gene54546:intron | 30.0% |
| !! | CTTTCTAAAACACACAAAAC+AGG | - | chr1.3:11833541-11833560 | None:intergenic | 30.0% |
| !! | GAAGTGTGTGTTTTAAATTG+TGG | + | chr1.3:11831924-11831943 | MS.gene54546:intron | 30.0% |
| !! | GTTTAGTGCAAATTGACTTT+TGG | + | chr1.3:11833657-11833676 | MS.gene54546:intron | 30.0% |
| !! | TGTAGACTTTTTGAAGAATC+GGG | + | chr1.3:11833240-11833259 | MS.gene54546:intron | 30.0% |
| !! | TTGTTTTGTTGAACTGATAC+TGG | + | chr1.3:11832529-11832548 | MS.gene54546:intron | 30.0% |
| !!! | AAGGTTGTGGATTGTTTTTT+GGG | - | chr1.3:11830871-11830890 | None:intergenic | 30.0% |
| !!! | CTGTTTTGTGTGTTTTAGAA+AGG | + | chr1.3:11833539-11833558 | MS.gene54546:intron | 30.0% |
| !!! | GCTGTTTTTACAAGTTATTG+TGG | + | chr1.3:11831517-11831536 | MS.gene54546:intron | 30.0% |
| !!! | GTTTTGTGTGTTTTAGAAAG+GGG | + | chr1.3:11833541-11833560 | MS.gene54546:intron | 30.0% |
| !!! | TTCTTGTTTTTATGCAGTGA+AGG | + | chr1.3:11833844-11833863 | MS.gene54546:intron | 30.0% |
| AAGAATCGGGAATATGATGA+TGG | + | chr1.3:11833253-11833272 | MS.gene54546:intron | 35.0% | |
| AAGAGGATTTAGGTACAGAA+GGG | - | chr1.3:11831011-11831030 | None:intergenic | 35.0% | |
| AGGATCATAAACAACCATGA+GGG | - | chr1.3:11833064-11833083 | None:intergenic | 35.0% | |
| ATAAGTACTTACCCTTCTAC+AGG | - | chr1.3:11833084-11833103 | None:intergenic | 35.0% | |
| CAGAATCTTAGATGCATCAA+CGG | - | chr1.3:11831388-11831407 | None:intergenic | 35.0% | |
| CATTATATCTCACGCATTTC+AGG | - | chr1.3:11833885-11833904 | None:intergenic | 35.0% | |
| CTCCTCTTCAAATCATCATT+TGG | - | chr1.3:11832031-11832050 | None:intergenic | 35.0% | |
| CTGCACTATTTGTCATGATT+TGG | + | chr1.3:11832851-11832870 | MS.gene54546:intron | 35.0% | |
| GACATTGAATTGATTGTTGG+TGG | + | chr1.3:11832444-11832463 | MS.gene54546:intron | 35.0% | |
| GAGAATTTGATTGGATGGAT+TGG | + | chr1.3:11831464-11831483 | MS.gene54546:intron | 35.0% | |
| GCAGTGTTACCTAGAAATAA+AGG | + | chr1.3:11832763-11832782 | MS.gene54546:intron | 35.0% | |
| GCTATATTGCTACGTTTATC+TGG | - | chr1.3:11833337-11833356 | None:intergenic | 35.0% | |
| GCTCTGATAATCTGATTAAG+TGG | - | chr1.3:11832901-11832920 | None:intergenic | 35.0% | |
| GTTGTTTATGATCCTGTAGA+AGG | + | chr1.3:11833069-11833088 | MS.gene54546:intron | 35.0% | |
| TAATACAAGCGCAATGTCTT+TGG | + | chr1.3:11832663-11832682 | MS.gene54546:intron | 35.0% | |
| TCGTCTTCATTTGTACAACT+AGG | - | chr1.3:11832585-11832604 | None:intergenic | 35.0% | |
| TCTATTGACGTTATGCTGTT+TGG | + | chr1.3:11831303-11831322 | MS.gene54546:intron | 35.0% | |
| TCTCAACTTATGCTCAATGT+AGG | + | chr1.3:11832688-11832707 | MS.gene54546:intron | 35.0% | |
| TGAAAGGATGCATACATTTG+GGG | - | chr1.3:11831068-11831087 | None:intergenic | 35.0% | |
| TGCATCCATATCTTGTACTA+GGG | + | chr1.3:11834609-11834628 | MS.gene54546:intron | 35.0% | |
| TGCCAAATGATGATTTGAAG+AGG | + | chr1.3:11832026-11832045 | MS.gene54546:CDS | 35.0% | |
| TGCGTGAGATATAATGTTGA+TGG | + | chr1.3:11833889-11833908 | MS.gene54546:intron | 35.0% | |
| TTGCATCCATATCTTGTACT+AGG | + | chr1.3:11834608-11834627 | MS.gene54546:intron | 35.0% | |
| ! | ATGCATACATTTGGGGATTT+TGG | - | chr1.3:11831061-11831080 | None:intergenic | 35.0% |
| ! | CTATTGACGTTATGCTGTTT+GGG | + | chr1.3:11831304-11831323 | MS.gene54546:intron | 35.0% |
| ! | GCATCTAAGATTCTGAATCA+TGG | + | chr1.3:11831393-11831412 | MS.gene54546:CDS | 35.0% |
| ! | TAACTTGTGCAGAAGTATGA+TGG | + | chr1.3:11833020-11833039 | MS.gene54546:intron | 35.0% |
| ! | TAGCTTGTGAAAACAGTTGA+TGG | - | chr1.3:11831753-11831772 | None:intergenic | 35.0% |
| ! | TGCATACATTTGGGGATTTT+GGG | - | chr1.3:11831060-11831079 | None:intergenic | 35.0% |
| ! | TTGTTGAACTGATACTGGTT+AGG | + | chr1.3:11832534-11832553 | MS.gene54546:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTAATG+TGG | + | chr1.3:11831586-11831605 | MS.gene54546:intron | 35.0% |
| !! | GTCATATTTTGTGAAGCACT+TGG | - | chr1.3:11834546-11834565 | None:intergenic | 35.0% |
| !! | TTATACTTTTTGAGAGCTGG+TGG | + | chr1.3:11832613-11832632 | MS.gene54546:intron | 35.0% |
| !! | TTGATTGGATGGATTGGTTT+GGG | + | chr1.3:11831470-11831489 | MS.gene54546:intron | 35.0% |
| !! | TTTGATTGGATGGATTGGTT+TGG | + | chr1.3:11831469-11831488 | MS.gene54546:intron | 35.0% |
| !!! | GAAGGTTGTGGATTGTTTTT+TGG | - | chr1.3:11830872-11830891 | None:intergenic | 35.0% |
| AATGAGCTTACATACATGCC+TGG | + | chr1.3:11832109-11832128 | MS.gene54546:CDS | 40.0% | |
| AATTCTCCTGTTCTTGAACG+TGG | + | chr1.3:11832151-11832170 | MS.gene54546:intron | 40.0% | |
| ACCAAACATTCACAACACCT+AGG | + | chr1.3:11831167-11831186 | MS.gene54546:intron | 40.0% | |
| ACGTTCAAGAACAGGAGAAT+TGG | - | chr1.3:11832152-11832171 | None:intergenic | 40.0% | |
| CAAGAGGATTTAGGTACAGA+AGG | - | chr1.3:11831012-11831031 | None:intergenic | 40.0% | |
| CAGGATCATAAACAACCATG+AGG | - | chr1.3:11833065-11833084 | None:intergenic | 40.0% | |
| CCAAACATTCACAACACCTA+GGG | + | chr1.3:11831168-11831187 | MS.gene54546:intron | 40.0% | |
| CGCAAAGAAGCAACTTAGTT+GGG | - | chr1.3:11830942-11830961 | None:intergenic | 40.0% | |
| CTTCTGTACCTAAATCCTCT+TGG | + | chr1.3:11831010-11831029 | MS.gene54546:CDS | 40.0% | |
| GAACACCCTAGTACAAGATA+TGG | - | chr1.3:11834617-11834636 | None:intergenic | 40.0% | |
| GAAGAGGAGATTAGAACAGA+TGG | + | chr1.3:11832042-11832061 | MS.gene54546:CDS | 40.0% | |
| GAATAGCACTAATATCCACC+TGG | + | chr1.3:11833689-11833708 | MS.gene54546:intron | 40.0% | |
| GAGATATAGCAAAGGGAGAA+AGG | + | chr1.3:11833941-11833960 | MS.gene54546:intron | 40.0% | |
| GATGCAATCACACATTGCAT+TGG | - | chr1.3:11834595-11834614 | None:intergenic | 40.0% | |
| GCAAAGAAGCAACTTAGTTG+GGG | - | chr1.3:11830941-11830960 | None:intergenic | 40.0% | |
| GGATCATAAACAACCATGAG+GGG | - | chr1.3:11833063-11833082 | None:intergenic | 40.0% | |
| GGTCTGTCTACAAACTAGTT+TGG | + | chr1.3:11832817-11832836 | MS.gene54546:intron | 40.0% | |
| TAGCATTACATGAAAAGGCC+AGG | - | chr1.3:11833710-11833729 | None:intergenic | 40.0% | |
| TCGCAAAGAAGCAACTTAGT+TGG | - | chr1.3:11830943-11830962 | None:intergenic | 40.0% | |
| TCTGCACAAGTTAAGAGTCT+CGG | - | chr1.3:11833013-11833032 | None:intergenic | 40.0% | |
| TGGTATCACAGTGAGTTTGT+CGG | + | chr1.3:11831121-11831140 | MS.gene54546:intron | 40.0% | |
| TTCTAATCCTTCACAGTCAC+TGG | + | chr1.3:11833303-11833322 | MS.gene54546:intron | 40.0% | |
| TTTCACATGCTCTCCACAAT+AGG | - | chr1.3:11831713-11831732 | None:intergenic | 40.0% | |
| ! | ATTAGAGTATTCACGACCCT+AGG | - | chr1.3:11831187-11831206 | None:intergenic | 40.0% |
| ! | GCATACATTTGGGGATTTTG+GGG | - | chr1.3:11831059-11831078 | None:intergenic | 40.0% |
| ! | TGCAGAAGTATGATGGAAAG+AGG | + | chr1.3:11833027-11833046 | MS.gene54546:intron | 40.0% |
| !!! | TGTTGTTTTGTCCATCGGTT+GGG | + | chr1.3:11834172-11834191 | MS.gene54546:intron | 40.0% |
| !!! | TTGTTGTTTTGTCCATCGGT+TGG | + | chr1.3:11834171-11834190 | MS.gene54546:intron | 40.0% |
| AAAGCGGAGTAGTAGTTTGG+TGG | + | chr1.3:11831970-11831989 | MS.gene54546:CDS | 45.0% | |
| AACTTTACATGCCCAACCGA+TGG | - | chr1.3:11834186-11834205 | None:intergenic | 45.0% | |
| AGGATTTAGGTACAGAAGGG+AGG | - | chr1.3:11831008-11831027 | None:intergenic | 45.0% | |
| ATGTTGCCTCTTTGTCGTCA+TGG | + | chr1.3:11832409-11832428 | MS.gene54546:intron | 45.0% | |
| ATTAGAACAGATGGCGTCGT+TGG | + | chr1.3:11832051-11832070 | MS.gene54546:CDS | 45.0% | |
| ATTCCTCCACGTTCAAGAAC+AGG | - | chr1.3:11832160-11832179 | None:intergenic | 45.0% | |
| ATTTGCCGGAGTTGCATTTC+TGG | - | chr1.3:11830918-11830937 | None:intergenic | 45.0% | |
| CAACTTAGTTGGGGATTTGC+CGG | - | chr1.3:11830932-11830951 | None:intergenic | 45.0% | |
| CATTACATGAAAAGGCCAGG+TGG | - | chr1.3:11833707-11833726 | None:intergenic | 45.0% | |
| CTACCTCTTCTATGGCCAAA+CGG | + | chr1.3:11834241-11834260 | MS.gene54546:intron | 45.0% | |
| CTTCTGGTCTACCTCTTCTA+TGG | + | chr1.3:11834233-11834252 | MS.gene54546:intron | 45.0% | |
| CTTTGCGACAATTGCGACAA+CGG | + | chr1.3:11830955-11830974 | MS.gene54546:CDS | 45.0% | |
| GAGAAAGCGGAGTAGTAGTT+TGG | + | chr1.3:11831967-11831986 | MS.gene54546:CDS | 45.0% | |
| GCTTACATACATGCCTGGAA+TGG | + | chr1.3:11832114-11832133 | MS.gene54546:CDS | 45.0% | |
| GGGCAAAACCAAGAGGATTT+AGG | - | chr1.3:11831021-11831040 | None:intergenic | 45.0% | |
| GTCATCATCGTTGAAGGTTG+TGG | - | chr1.3:11830884-11830903 | None:intergenic | 45.0% | |
| GTTTGCCAGAAATGCAACTC+CGG | + | chr1.3:11830910-11830929 | MS.gene54546:CDS | 45.0% | |
| TATCCGTTTGGCCATAGAAG+AGG | - | chr1.3:11834247-11834266 | None:intergenic | 45.0% | |
| TCATAAACAACCATGAGGGG+CGG | - | chr1.3:11833060-11833079 | None:intergenic | 45.0% | |
| TCTAGGTAACACTGCGTACT+AGG | - | chr1.3:11832758-11832777 | None:intergenic | 45.0% | |
| TCTTAGCCATGACGACAAAG+AGG | - | chr1.3:11832418-11832437 | None:intergenic | 45.0% | |
| TGGGAGCTGGAATTCTTCTT+CGG | - | chr1.3:11830852-11830871 | None:intergenic | 45.0% | |
| TTAGGTACAGAAGGGAGGAT+AGG | - | chr1.3:11831003-11831022 | None:intergenic | 45.0% | |
| TTGCATCTCAGTGTGCATGT+TGG | + | chr1.3:11832256-11832275 | MS.gene54546:intron | 45.0% | |
| ! | CAGTGTGCATGTTGGTTGTT+TGG | + | chr1.3:11832264-11832283 | MS.gene54546:intron | 45.0% |
| ! | CCCTAGGTGTTGTGAATGTT+TGG | - | chr1.3:11831171-11831190 | None:intergenic | 45.0% |
| !! | CGCGTTGACTGCTACTAAAA+CGG | + | chr1.3:11832078-11832097 | MS.gene54546:CDS | 45.0% |
| !! | CGTTTTAGTAGCAGTCAACG+CGG | - | chr1.3:11832080-11832099 | None:intergenic | 45.0% |
| !!! | GTGGATTGTTTTTTGGGAGC+TGG | - | chr1.3:11830865-11830884 | None:intergenic | 45.0% |
| !! | ATATTATATTATTGTATTTA+GGG | - | chr1.3:11833446-11833465 | None:intergenic | 5.0% |
| !! | TATATTATATTATTGTATTT+AGG | - | chr1.3:11833447-11833466 | None:intergenic | 5.0% |
| ACAGGAGAATTGGCATCCCT+TGG | - | chr1.3:11832142-11832161 | None:intergenic | 50.0% | |
| CAGATGACCAGTGACTGTGA+AGG | - | chr1.3:11833313-11833332 | None:intergenic | 50.0% | |
| GACGTCGTCATCATCGTTGA+AGG | - | chr1.3:11830890-11830909 | None:intergenic | 50.0% | |
| GGAATTCTTCTTCGGCGAAG+TGG | - | chr1.3:11830844-11830863 | None:intergenic | 50.0% | |
| TAGGTGTGAGGCAGAAGAGA+TGG | - | chr1.3:11830984-11831003 | None:intergenic | 50.0% | |
| TCTCCTGTTCTTGAACGTGG+AGG | + | chr1.3:11832154-11832173 | MS.gene54546:intron | 50.0% | |
| TCTTGAACGTGGAGGAATGC+AGG | + | chr1.3:11832162-11832181 | MS.gene54546:intron | 50.0% | |
| !!! | GATTTTGGGGTTGTGAGAGC+AGG | - | chr1.3:11831046-11831065 | None:intergenic | 50.0% |
| CAGAAGGGAGGATAGGTGTG+AGG | - | chr1.3:11830996-11831015 | None:intergenic | 55.0% | |
| GCAGGAAGGGCAAAACCAAG+AGG | - | chr1.3:11831028-11831047 | None:intergenic | 55.0% | |
| TGGGGTTGTGAGAGCAGGAA+GGG | - | chr1.3:11831041-11831060 | None:intergenic | 55.0% | |
| TTGGGGTTGTGAGAGCAGGA+AGG | - | chr1.3:11831042-11831061 | None:intergenic | 55.0% | |
| ACATGCCTGGAATGGCGCCA+AGG | + | chr1.3:11832122-11832141 | MS.gene54546:CDS | 60.0% | |
| AGGAGAATGTCCGCCCCTCA+TGG | + | chr1.3:11833047-11833066 | MS.gene54546:intron | 60.0% | |
| CATGCCTGGAATGGCGCCAA+GGG | + | chr1.3:11832123-11832142 | MS.gene54546:CDS | 60.0% | |
| GCATCCCTTGGCGCCATTCC+AGG | - | chr1.3:11832130-11832149 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 11830832 | 11834649 | 11830832 | ID=MS.gene54546 |
| chr1.3 | mRNA | 11830832 | 11834649 | 11830832 | ID=MS.gene54546.t1;Parent=MS.gene54546 |
| chr1.3 | exon | 11830832 | 11831072 | 11830832 | ID=MS.gene54546.t1.exon1;Parent=MS.gene54546.t1 |
| chr1.3 | CDS | 11830832 | 11831072 | 11830832 | ID=cds.MS.gene54546.t1;Parent=MS.gene54546.t1 |
| chr1.3 | exon | 11831334 | 11831414 | 11831334 | ID=MS.gene54546.t1.exon2;Parent=MS.gene54546.t1 |
| chr1.3 | CDS | 11831334 | 11831414 | 11831334 | ID=cds.MS.gene54546.t1;Parent=MS.gene54546.t1 |
| chr1.3 | exon | 11831954 | 11832169 | 11831954 | ID=MS.gene54546.t1.exon3;Parent=MS.gene54546.t1 |
| chr1.3 | CDS | 11831954 | 11832169 | 11831954 | ID=cds.MS.gene54546.t1;Parent=MS.gene54546.t1 |
| chr1.3 | exon | 11834630 | 11834649 | 11834630 | ID=MS.gene54546.t1.exon4;Parent=MS.gene54546.t1 |
| chr1.3 | CDS | 11834630 | 11834649 | 11834630 | ID=cds.MS.gene54546.t1;Parent=MS.gene54546.t1 |
| Gene Sequence |
| Protein sequence |
