AlfalfaGEDB | MS.gene54559

M. sativa cultivar XinJiangDaYe / MS.gene54559

KEGG: K16196
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54559.t1	XP_013456291.1	99.1	445	4	0	1	445	291	735	1.60E-256	894.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54559.t1	Q9LX30	72.2	413	113	1	35	445	328	740	3.0e-174	612.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54559.t1	A0A072UKV1	99.1	445	4	0	1	445	291	735	1.2e-256	894.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54559.t1	MTR_4g067160	99.101	445	4	0	1	445	291	735	0.0	924
MS.gene54559.t1	MTR_4g051648	25.157	318	166	10	129	435	5	261	4.73e-26	112
MS.gene54559.t1	MTR_1g071480	25.316	316	164	10	129	433	1	255	1.20e-23	104
MS.gene54559.t1	MTR_1g052115	24.601	313	168	9	129	432	1	254	9.51e-23	102
MS.gene54559.t1	MTR_1g081000	25.641	312	164	9	129	431	1	253	2.30e-22	100
MS.gene54559.t1	MTR_1g081000	25.641	312	164	9	129	431	1	253	2.41e-22	100
MS.gene54559.t1	MTR_8g098425	25.890	309	159	9	138	435	414	663	6.74e-22	99.4
MS.gene54559.t1	MTR_5g059880	27.331	311	155	11	138	438	198	447	2.35e-21	96.7
MS.gene54559.t1	MTR_1g100250	25.000	308	163	8	138	435	417	666	4.75e-21	96.7
MS.gene54559.t1	MTR_5g059940	27.010	311	156	11	138	438	131	380	9.44e-21	94.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54559.t1	AT3G59410	70.136	442	129	2	8	446	300	741	0.0	640
MS.gene54559.t1	AT3G59410	70.136	442	129	2	8	446	301	742	0.0	640
MS.gene54559.t1	AT3G59410	70.136	442	129	2	8	446	300	741	0.0	640
MS.gene54559.t1	AT3G59410	70.136	442	129	2	8	446	324	765	0.0	639
MS.gene54559.t1	AT3G59410	70.136	442	129	2	8	446	300	741	0.0	639
MS.gene54559.t1	AT3G44200	25.472	318	165	11	129	435	5	261	5.38e-26	112
MS.gene54559.t1	AT3G44200	25.472	318	165	11	129	435	5	261	5.38e-26	112
MS.gene54559.t1	AT1G54510	25.000	328	175	10	129	447	1	266	9.68e-25	107
MS.gene54559.t1	AT1G54510	25.000	328	175	10	129	447	1	266	9.68e-25	107
MS.gene54559.t1	AT1G54510	25.000	328	175	10	129	447	1	266	9.68e-25	107

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Find 102 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGTGACTTTGGTCT+CGG	0.452656	4.2:-38902050	MS.gene54559:intron
AACAGAGCTGTACAATTTAG+GGG	0.661067	4.2:-38906180	MS.gene54559:intron
AACATATCTTTATATACAAA+TGG	0.451751	4.2:-38903563	MS.gene54559:CDS
AACTCAGCAACCCATGAAGG+TGG	0.591480	4.2:+38901236	None:intergenic
AACTTGTCCAGTGCCATCAA+TGG	0.472833	4.2:+38901518	None:intergenic
AAGCGAAGTTTCCACCTTCA+TGG	0.382307	4.2:-38901247	MS.gene54559:CDS
AAGGTTTGGCACACATACAT+GGG	0.632113	4.2:-38902136	MS.gene54559:CDS
AATAGAAAAGGATCTAATAA+TGG	0.415727	4.2:-38906352	MS.gene54559:intron
AATGAAGAAAATTCGCCTTA+AGG	0.409579	4.2:-38905366	MS.gene54559:CDS
AATTCAGACTCCATTCGTGG+AGG	0.716408	4.2:+38901125	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATGTTTGATCCTCTCA+TGG	+	chr4.2:38904998-38905017	None:intergenic	30.0%
AAATATTGACAAAGACTCGT+CGG	+	chr4.2:38904530-38904549	None:intergenic	30.0%
AACAACCGATCTTATAAGAA+CGG	+	chr4.2:38904821-38904840	None:intergenic	30.0%
AATGAAGAAAATTCGCCTTA+AGG	-	chr4.2:38902202-38902221	MS.gene54559:CDS	30.0%
AGATCATAAAGCTAGAAGAT+AGG	-	chr4.2:38903072-38903091	MS.gene54559:intron	30.0%
AGCATCTCAAACAATAGAAA+AGG	-	chr4.2:38901204-38901223	MS.gene54559:CDS	30.0%
ATACTACATTAACTGCCAAA+AGG	+	chr4.2:38904128-38904147	None:intergenic	30.0%
ATAGCAGTATAGCACAAATA+TGG	+	chr4.2:38904588-38904607	None:intergenic	30.0%
ATTCAAGCAAAGTTTGATGT+TGG	+	chr4.2:38904743-38904762	None:intergenic	30.0%
CAAATTGACATGCTTAGTAA+CGG	+	chr4.2:38902673-38902692	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	38901109	38906481	38901109	ID=MS.gene54559
chr4.2	mRNA	38901109	38906481	38901109	ID=MS.gene54559.t1;Parent=MS.gene54559
chr4.2	exon	38906353	38906481	38906353	ID=MS.gene54559.t1.exon1;Parent=MS.gene54559.t1
chr4.2	CDS	38906353	38906481	38906353	ID=cds.MS.gene54559.t1;Parent=MS.gene54559.t1
chr4.2	exon	38906181	38906267	38906181	ID=MS.gene54559.t1.exon2;Parent=MS.gene54559.t1
chr4.2	CDS	38906181	38906267	38906181	ID=cds.MS.gene54559.t1;Parent=MS.gene54559.t1
chr4.2	exon	38905990	38906076	38905990	ID=MS.gene54559.t1.exon3;Parent=MS.gene54559.t1
chr4.2	CDS	38905990	38906076	38905990	ID=cds.MS.gene54559.t1;Parent=MS.gene54559.t1
chr4.2	exon	38905792	38905903	38905792	ID=MS.gene54559.t1.exon4;Parent=MS.gene54559.t1
chr4.2	CDS	38905792	38905903	38905792	ID=cds.MS.gene54559.t1;Parent=MS.gene54559.t1
chr4.2	exon	38905338	38905449	38905338	ID=MS.gene54559.t1.exon5;Parent=MS.gene54559.t1
chr4.2	CDS	38905338	38905449	38905338	ID=cds.MS.gene54559.t1;Parent=MS.gene54559.t1
chr4.2	exon	38903942	38903996	38903942	ID=MS.gene54559.t1.exon6;Parent=MS.gene54559.t1
chr4.2	CDS	38903942	38903996	38903942	ID=cds.MS.gene54559.t1;Parent=MS.gene54559.t1
chr4.2	exon	38903550	38903719	38903550	ID=MS.gene54559.t1.exon7;Parent=MS.gene54559.t1
chr4.2	CDS	38903550	38903719	38903550	ID=cds.MS.gene54559.t1;Parent=MS.gene54559.t1
chr4.2	exon	38902051	38902235	38902051	ID=MS.gene54559.t1.exon8;Parent=MS.gene54559.t1
chr4.2	CDS	38902051	38902235	38902051	ID=cds.MS.gene54559.t1;Parent=MS.gene54559.t1
chr4.2	exon	38901458	38901606	38901458	ID=MS.gene54559.t1.exon9;Parent=MS.gene54559.t1
chr4.2	CDS	38901458	38901606	38901458	ID=cds.MS.gene54559.t1;Parent=MS.gene54559.t1
chr4.2	exon	38901109	38901366	38901109	ID=MS.gene54559.t1.exon10;Parent=MS.gene54559.t1
chr4.2	CDS	38901109	38901366	38901109	ID=cds.MS.gene54559.t1;Parent=MS.gene54559.t1

Gene Sequence

>MS.gene54559

TATTTTATTGTGGATGAGTATACAACAGAAGATAACAAAGATATGTCTGACAGTGAGTCTACAGAGTCTCTATCTTCTGTGTCGCCTCATCACCAAGCATCTCAAACAATAGAAAAGGATCTAATAATGGTAAAAACTCAAAATTTACTGTTATCAGCTTGTCACAACAGATTTACGCTCAACATTAATTTTGTTTTTCCTTCTTTTGCATCAGGTTCACATGCTTCGCCTTGTTTGTGCCTCTAAAGGTACCTTGGCTGACTCTTTGCCTCAATTAGCAACAGAGCTGTACAATTTAGGGGTATAAACTAGATTGCTATTTTACCAAAACAATAATATTTTTACTCCTATTTTCAAATAATTTCCAGGTCTAGAATGATCCTAATCCTTTGAGTTGTATTCCAGATATTTTCTGACTCGGCACGTGATATGGCATCAAAACCACCTTCCCTTTTCAACAAAACCTTTGATCATATCTTCAAGAAACACCTGGTTGGCAAATCTTATGGGGAAATATACTCTCTTTCTTACCACTAAATTTTTGTTTATTTTTTTTATTATTTATTTGTTTTGTCTAGGCATCATCCAGAATATCTCAATTTTGGACACCTTCTTCTGATCTTGGAGGCTCTAATACAGTTCAACACAGTTCTCGATATTTAAATGATTTTGAGGAGCTACGCCCTCTTGGTAAAGGAACTTCATGAACTTGTGTCGAGTTTTATATATATAATAATATAATAATATTCTTTGATGTCATATACTCCTAGATGTCTCCCATGATGATGGTAGACTACTATAATTTCTTTTTGTCGATGATCTTGATTGCCTGGCCTTTGTGTTTGCTGGAAAAGATAGCATGAATGATTGCCTGGCCTTTGTGTTTGCTGGAAAAGATAGCATGAATTATTATAGCTTTGGAAATGTTTTTAATCATTTCAATGAACTTTTTTATTAAAAGATGATTATTTAACTGGATTTTCTCATATCTCTAATCATTTACTGAAACATTTTGCTTGACAATGTAAATAGGTCATGGTGGTTTTGGTCACGTTGTGTTGTGCAAAAATAAACTCGATGGAAGGCAGTATGCAATGAAGAAAATTCGCCTTAAGGACAAAAGCATGCCTGACCGAATATTAAGGTGAATTTAATTGATCTAGGAAGGAACTTGCTACAGCTTTTTCACTAATGTATATAATTCAGTGCATGATTATGTAATTATGGCCAAAGCATTACATTTACAGTCATTGATTAATATTAGAATATTTACCTGATCCAGTTTTTGCAAATCTTCAATTTCTTTTTACAAAACGGGCTGTATTGTCATCTGCACTTTCTGATCCAACTCCTGCATGCTGTAGTTTATGATTAACTTTGGGTTGATGAAACATTTTGAAGCAGTAACCGTAACTGCTGTTGAAACTAAACTTTCTTCAGAATCCAAGGATTGATTTCGTTCTTTGACATAAGTTTTATTGGTCATACGGAAAGTATGATTGCGCTTAAAAACTTCATATTCTGATAAAAGTCTTAACTGTGGTGGTGTTTGAAGATGTATCCGTTACTAAGCATGTCAATTTGTCAACATTTTGATCAATTAATTTCTTTGCCACCCACCATTTTTTGGTCTACATAATTTATTGTAGGATTTCAACTAGACAACTAGGCATAACTTTGCATTTCATCTACCTGTATTAGATTCTGAGGTCGATCTTCGATCTTATTGTTACGTTAAATTATTGATCTCATTATTACAAAATATTTCCTCCTTCGGTTTTACTATTGCTTAACCTAAATATCTTTAAAATCTTGTATCTTAGTGTTCTCAAACTTATTGAAATCCTGTACAGCTGCATCAACTAGTATCCCCGTAGCTATATGTTAAATTATATTGAGGGAATCAAATATAATTTAGAGCCATTATTTGTTGATGACAAAAAATAGAGCTGATGTCTGATGTAGATCATAAAGCTAGAAGATAGGATTTGTGATGGAAGATGAATGCAGATTTAAAAGAGATTTGAAAAAGAAAAAAATTGTGAAAAGATATCATGGTCAATTTATTTAATTGGTGCTAATGTTTCGTTGCATAAAATTGAAATGACACGCAGAGGAGAATTTAAATTAAAACCAAGGGGAGGGCAAGTATGGCTTGTAAATAAGTATAAGTATACTTCATCTTTGCATCACACATGAACTTTTTTTATTGGCCAATTAGATTTCATGGTATACGTATGACATATCTTATGTATTGTCTCACCTCATGTTTTGATATAGTTCATTTTCCTTTATGTTGTTTGTCCTCCCCATTTCATTTTTTTTTTCTTGTGTTGAAAATTCTAAGAGAAAGAATATATTTATTTGATTACTGCCAGCTTTGCCCATTTCTTATCTTTTCTTACTGTTTATATGTAACTGTTTACTCGTTTTTTAATTACAATAACTTACTTGTTTATCCATCTATCTATGGTGAGAAAATCAGGGAAGTAGCTACGCTTTCTCGTTTACAACATCAACATGTTGTTCGGTATTATCAGGTATAAAGGTTTTTATTTTTTGCACAAATTTTCATATTATGGAAACTTTTGTTTCTTGTATCAGATTTTTTATTTCCTTATGTTGCTGCATTAACTGTATGCTCTAGTGCACAGTTTTTGGAAGAGTCTATGAATAGAAATGCAAATAAAATGTTTTAGTTTACCACAATATTATGTGGTCATATGATGGTTTTAAATTTTTAATAGCTGTAAAACTTCCAGGCATGGTTTGAAACTGGAGTTGCAGATTCTTGTGGTGATCCTGCTGGGGAATCAAGAACTCCAGCGAGCTCTACTTTCAGCTACAAAGCTGCAAGCTCCAATGATGCTATTGGGCTTGAGAATCAGCTTGAATCAACATATCTTTATATACAAATGGAGTACTGTCCCAGGTAAGATTTTCAGAGAGCTAAGTTCTTCATAATTATTTTCTCTTCTTATTGAACTTCTCCTTTTGTATTAGAAAAGAGGTCTTTCCTTTTGGCAGTTAATGTAGTATAATGACTAGTAAGTTTTGGACATGAAAGTCGGGGCATTTATAACTGAAGGAAATTTTTGTTGTTGTTGGGAACTTGGAGGCTCGAAAGTTGAAATATACTTTTCAATTGGAATTCATACAGTCTACATGTTTGTCCAGTCTCCACTTTCTTTGGCCGTGTTTTTATTTCCTGCTGCCGTTTCCAATAGGCTTCCTTCAATTCACTGCCACTGTACATCTCTAACTGTTGCTGCCAGCTTGTCAGTCTCAGTTTTCGTCCAGCCTTTCACTAGGTCTGGCTTGCAGTTGTTGGATCAAACCATCCTTAGATATCAAACACACCCACTTGTGCTCTTTCTCGCGTGTAACCTAACATTGCCGCCACTGTTTGCCGCACATTCCGACGAGTCTTTGTCAATATTTGTAGTGCTTGGTTTATACCTTACAATTATTTGTTTCCATATTTGTGCTATACTGCTATTTCTTACTTTTCTTTGTTGATTCACACCGAATTCTAATCCTCTGAAGTCTGATCCTTCCATTTTCACCAACTATATCAGTGCCCCACTGTCAACTGACAAGTTAGACAAAAAAAACTATAATATGTGGGCCTCCAACATCAAACTTTGCTTGAATTCTAGGAACATAAAGACTACCGCGCCAAGATGGTCGATTTTGTGCTTGAGCCCAACCGTTCTTATAAGATCGGTTGTTATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAATAAAATAAAAAAAAAGAATAAGATTGGTTTTAGAATGAAGGTCTGAAGAGGTTACAGAGACGACACTCATTTTTGACAATCAGATTGCTCTGCACATATTCTCTCAAATCCAGCGTTCCATGAGAGGATCAAACATATTTAGGTATAGGTCATTATACTAGTTTTGTAAATTCAAATTATCAACTGGTAGAGGTCTTCACTAAAGATTGAAGGTCCTTGAATCAGTTATGTGTGTAACAAACTTGGTGTATGTCATTTATATGCTCCAGATGAGGGTGGCTGATAGAAGCAATGTAAATAGGGTACTTATAGGCTGATCTTGTGTTGTATATGATTGTTATTGTTATTGTTATTGTGTTTGTGTTTGTGTCTATTGTTTCATTTAATTCTTGACTCATGTATACAAAATTTCACAAGTACACTCATTATTGTTAATTATGTGGTATTCACTAAATGTCATTGTTGTTGGGTTCAAAGGACTCTTCGCCAGATGTTTGAATCATATAATCATTTTGACAAAGAATTGGCCTGGCATTTGTTTCGCCAAATAGTAGAAGGTTTGGCACACATACATGGGCAAGGAATAATTCACCGGGACTTAACACCAAGTAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGACTTTGGTCTCGGTAAGATCTTCAATCCTTTAGTTACTTATTTTCTTTTTCTTCGTGTATGTTTCCAATATTTTTTCTATCTAGATTATCACAACAATGAACAACTTCAATATATGTGATTGGTGCTCATGAAATTATTAGAATATGTGATAGGCCTAGTAATCTGTAGGCTAGCAAGGTTTCCAATTGCATCCTGATTTGCATCTGCAATTTTCATTTATCCATATAATTCTCTTTGTAATACAGTCGAGGTCATTAATAAATGCCTGCACTTATACACATTTTCCTGTGTGTGCAGTGACATTATGTAACTCTTGGTGTAGTGTTTCGCTGTTTCTGATTTGGTCTAAAAATTCATATAAAACAATGCCCTGTTAATGTGTGAGCTTTCTACACTGGAGGGAGTGGTGTTTGTTCATGAATGAATTCTCAAATTTTCTTTTCTTTTTCTTTCAGCCAAGTTCTTGAAGTTGGAGCAGCTGGATCAAGATCTAGCCCATCCTGCTGATACAACTGGAGTTTCCATTGATGGCACTGGACAAGTTGGGACATATTTCTATACAGCTCCTGAGATTGAGCAAGGATGGCCTAAGATTGATGAAAAGGTGTAAAGCATTCAGCACTATCCTTTATAGCCATATAACAATGTTTGCTTCGAGCAAAATTATGTAATTCTTGGGTTTAATTGATGTGCAGGCTGACATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCATCCATTTGGGACTGCAATGGAGAGGCACGTTGTTTTATCCGATCTGAAACAGAAAGCGAAGTTTCCACCTTCATGGGTTGCTGAGTTTCCAGAACAGGAATCCTTGCTGCGGCAGTTAATGTCTCCAGGTCCCTCAGATCGCCCGTCTGCAACAGAACTTTTGCAGAATGCATTTCCTCCACGAATGGAGTCTGAATTGGTGGATGGCAAGTGA

Protein sequence

>MS.gene54559.t1

YFIVDEYTTEDNKDMSDSESTESLSSVSPHHQASQTIEKDLIMVHMLRLVCASKGTLADSLPQLATELYNLGIFSDSARDMASKPPSLFNKTFDHIFKKHLASSRISQFWTPSSDLGGSNTVQHSSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAMKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVADSCGDPAGESRTPASSTFSYKAASSNDAIGLENQLESTYLYIQMEYCPRTLRQMFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDLAHPADTTGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKQKAKFPPSWVAEFPEQESLLRQLMSPGPSDRPSATELLQNAFPPRMESELVDGK