Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54601.t1 | XP_013455733.1 | 55 | 251 | 92 | 5 | 1 | 248 | 1 | 233 | 4.20E-60 | 241.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54601.t1 | Q4PSU4 | 34.5 | 197 | 113 | 5 | 1 | 187 | 55 | 245 | 1.2e-15 | 85.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54601.t1 | A0A072UJ33 | 55.0 | 251 | 92 | 5 | 1 | 248 | 1 | 233 | 3.0e-60 | 241.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene54601.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54601.t1 | MTR_4g051538 | 54.980 | 251 | 92 | 5 | 1 | 248 | 1 | 233 | 2.63e-81 | 244 |
| MS.gene54601.t1 | MTR_3g104630 | 56.757 | 148 | 57 | 5 | 94 | 238 | 3 | 146 | 4.55e-42 | 140 |
| MS.gene54601.t1 | MTR_3g052920 | 36.527 | 167 | 89 | 5 | 1 | 150 | 1 | 167 | 7.16e-22 | 90.9 |
| MS.gene54601.t1 | MTR_2g030740 | 37.126 | 167 | 88 | 4 | 1 | 150 | 1 | 167 | 1.04e-21 | 90.5 |
| MS.gene54601.t1 | MTR_1g105910 | 36.646 | 161 | 85 | 4 | 1 | 144 | 1 | 161 | 1.14e-21 | 90.5 |
| MS.gene54601.t1 | MTR_1g012570 | 37.356 | 174 | 87 | 8 | 1 | 156 | 1 | 170 | 1.25e-21 | 90.5 |
| MS.gene54601.t1 | MTR_8g043650 | 36.424 | 151 | 81 | 3 | 1 | 136 | 1 | 151 | 3.11e-21 | 89.4 |
| MS.gene54601.t1 | MTR_1g077360 | 30.457 | 197 | 113 | 5 | 1 | 187 | 1 | 183 | 3.98e-21 | 89.0 |
| MS.gene54601.t1 | MTR_5g053390 | 32.075 | 212 | 116 | 8 | 1 | 201 | 1 | 195 | 6.40e-21 | 88.6 |
| MS.gene54601.t1 | MTR_1g106070 | 36.646 | 161 | 85 | 5 | 1 | 144 | 1 | 161 | 1.34e-20 | 86.3 |
| MS.gene54601.t1 | MTR_1g108510 | 32.530 | 166 | 99 | 3 | 1 | 156 | 1 | 163 | 1.89e-20 | 87.0 |
| MS.gene54601.t1 | MTR_3g030770 | 32.530 | 166 | 99 | 3 | 1 | 156 | 1 | 163 | 3.13e-20 | 86.3 |
| MS.gene54601.t1 | MTR_3g080940 | 33.133 | 166 | 96 | 4 | 1 | 155 | 1 | 162 | 1.72e-19 | 84.0 |
| MS.gene54601.t1 | MTR_1g105920 | 35.762 | 151 | 82 | 3 | 1 | 136 | 1 | 151 | 2.93e-19 | 84.0 |
| MS.gene54601.t1 | MTR_2g085280 | 30.625 | 160 | 100 | 3 | 1 | 151 | 1 | 158 | 4.89e-19 | 83.6 |
| MS.gene54601.t1 | MTR_2g085250 | 30.625 | 160 | 100 | 3 | 1 | 151 | 1 | 158 | 5.31e-19 | 83.2 |
| MS.gene54601.t1 | MTR_8g086290 | 31.579 | 171 | 84 | 4 | 4 | 156 | 7 | 162 | 1.23e-18 | 80.9 |
| MS.gene54601.t1 | MTR_1g075600 | 30.682 | 176 | 106 | 4 | 1 | 163 | 1 | 173 | 1.52e-18 | 82.0 |
| MS.gene54601.t1 | MTR_3g052870 | 51.389 | 72 | 35 | 0 | 1 | 72 | 1 | 72 | 2.62e-18 | 80.9 |
| MS.gene54601.t1 | MTR_5g045560 | 33.577 | 137 | 81 | 3 | 1 | 127 | 1 | 137 | 2.65e-18 | 81.3 |
| MS.gene54601.t1 | MTR_1g108580 | 34.132 | 167 | 81 | 6 | 1 | 144 | 1 | 161 | 2.98e-18 | 81.3 |
| MS.gene54601.t1 | MTR_2g105290 | 30.818 | 159 | 101 | 3 | 4 | 156 | 7 | 162 | 1.66e-17 | 77.8 |
| MS.gene54601.t1 | MTR_5g055100 | 29.536 | 237 | 127 | 10 | 1 | 202 | 1 | 232 | 2.06e-17 | 79.0 |
| MS.gene54601.t1 | MTR_2g093190 | 31.677 | 161 | 93 | 4 | 1 | 144 | 1 | 161 | 1.05e-16 | 77.0 |
| MS.gene54601.t1 | MTR_0121s0100 | 42.857 | 77 | 44 | 0 | 1 | 77 | 1 | 77 | 7.05e-16 | 72.4 |
| MS.gene54601.t1 | MTR_3g030780 | 39.252 | 107 | 62 | 2 | 1 | 104 | 1 | 107 | 2.63e-15 | 70.9 |
| MS.gene54601.t1 | MTR_4g094638 | 49.275 | 69 | 35 | 0 | 9 | 77 | 2 | 70 | 2.82e-15 | 72.0 |
| MS.gene54601.t1 | MTR_4g094632 | 34.028 | 144 | 83 | 4 | 9 | 151 | 2 | 134 | 2.74e-14 | 68.9 |
| MS.gene54601.t1 | MTR_1g047550 | 36.885 | 122 | 61 | 3 | 9 | 118 | 2 | 119 | 2.98e-14 | 69.3 |
| MS.gene54601.t1 | MTR_1g105905 | 29.189 | 185 | 112 | 6 | 18 | 185 | 1 | 183 | 7.43e-14 | 68.9 |
| MS.gene54601.t1 | MTR_8g046350 | 41.667 | 72 | 42 | 0 | 9 | 80 | 2 | 73 | 8.01e-14 | 67.8 |
| MS.gene54601.t1 | MTR_8g051580 | 32.143 | 140 | 71 | 4 | 9 | 126 | 2 | 139 | 9.28e-14 | 67.8 |
| MS.gene54601.t1 | MTR_8g079502 | 41.250 | 80 | 46 | 1 | 9 | 87 | 2 | 81 | 1.57e-13 | 67.4 |
| MS.gene54601.t1 | MTR_0121s0080 | 30.120 | 166 | 99 | 4 | 1 | 149 | 1 | 166 | 1.75e-13 | 68.2 |
| MS.gene54601.t1 | MTR_3g067875 | 49.091 | 55 | 28 | 0 | 18 | 72 | 1 | 55 | 3.70e-13 | 63.2 |
| MS.gene54601.t1 | MTR_8g022970 | 32.515 | 163 | 94 | 4 | 8 | 159 | 17 | 174 | 4.50e-13 | 66.2 |
| MS.gene54601.t1 | MTR_1g063160 | 36.134 | 119 | 66 | 3 | 9 | 118 | 2 | 119 | 1.76e-12 | 64.3 |
| MS.gene54601.t1 | MTR_1g054265 | 40.000 | 70 | 42 | 0 | 9 | 78 | 2 | 71 | 6.28e-12 | 62.8 |
| MS.gene54601.t1 | MTR_4g131030 | 38.889 | 72 | 44 | 0 | 9 | 80 | 2 | 73 | 9.67e-12 | 63.2 |
| MS.gene54601.t1 | MTR_1g029670 | 48.438 | 64 | 33 | 0 | 9 | 72 | 2 | 65 | 2.72e-11 | 61.2 |
| MS.gene54601.t1 | MTR_7g028448 | 29.921 | 127 | 83 | 4 | 26 | 148 | 29 | 153 | 5.82e-11 | 60.1 |
| MS.gene54601.t1 | MTR_4g036915 | 29.921 | 127 | 83 | 4 | 26 | 148 | 29 | 153 | 5.82e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54601.t1 | AT4G36590 | 34.132 | 167 | 93 | 3 | 5 | 156 | 3 | 167 | 2.36e-21 | 90.1 |
| MS.gene54601.t1 | AT1G29962 | 35.227 | 176 | 96 | 4 | 1 | 161 | 1 | 173 | 2.56e-21 | 88.2 |
| MS.gene54601.t1 | AT2G24840 | 32.474 | 194 | 109 | 6 | 7 | 187 | 61 | 245 | 1.49e-20 | 88.2 |
| MS.gene54601.t1 | AT1G28460 | 35.260 | 173 | 97 | 4 | 1 | 161 | 1 | 170 | 1.98e-19 | 83.2 |
| MS.gene54601.t1 | AT5G60440 | 32.547 | 212 | 115 | 7 | 5 | 205 | 3 | 197 | 8.52e-18 | 81.3 |
| MS.gene54601.t1 | AT1G01530 | 37.288 | 118 | 68 | 2 | 5 | 117 | 3 | 119 | 1.11e-17 | 80.1 |
| MS.gene54601.t1 | AT2G34440 | 32.203 | 177 | 97 | 7 | 9 | 174 | 2 | 166 | 5.75e-17 | 76.3 |
| MS.gene54601.t1 | AT1G28450 | 32.759 | 174 | 99 | 4 | 1 | 159 | 1 | 171 | 1.79e-16 | 75.5 |
| MS.gene54601.t1 | AT3G04100 | 41.573 | 89 | 49 | 1 | 2 | 90 | 7 | 92 | 1.97e-15 | 73.2 |
| MS.gene54601.t1 | AT1G65360 | 33.019 | 106 | 67 | 1 | 5 | 106 | 3 | 108 | 8.89e-15 | 71.6 |
| MS.gene54601.t1 | AT3G66656 | 47.692 | 65 | 34 | 0 | 9 | 73 | 2 | 66 | 1.83e-13 | 67.0 |
| MS.gene54601.t1 | AT1G47760 | 39.759 | 83 | 47 | 1 | 9 | 91 | 2 | 81 | 3.79e-13 | 66.2 |
| MS.gene54601.t1 | AT4G11880 | 49.254 | 67 | 32 | 1 | 10 | 76 | 3 | 67 | 8.30e-11 | 59.7 |
| MS.gene54601.t1 | AT4G11880 | 49.254 | 67 | 32 | 1 | 10 | 76 | 3 | 67 | 8.30e-11 | 59.7 |
Find 46 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGCATATCATTCATCTTT+AGG | 0.191781 | 4.3:+37967912 | None:intergenic |
| ACAAATCCTCCTTATGTCTT+TGG | 0.244037 | 4.3:-37968329 | MS.gene54601:CDS |
| AACAACAACGGTTATGAAAT+TGG | 0.254239 | 4.3:-37968302 | MS.gene54601:CDS |
| TCAGGAAAGTTTGAAGGCTT+TGG | 0.277217 | 4.3:-37968656 | MS.gene54601:CDS |
| CAAATCCTCCTTATGTCTTT+GGG | 0.283816 | 4.3:-37968328 | MS.gene54601:CDS |
| GAAGGTTCTCCATAACAATA+TGG | 0.353627 | 4.3:+37968814 | None:intergenic |
| CTTTGGAAAGTTATGGCTAT+TGG | 0.358280 | 4.3:-37968639 | MS.gene54601:CDS |
| AAAATTGGACACATCTTTAG+TGG | 0.370003 | 4.3:-37968569 | MS.gene54601:CDS |
| GATGTTATTGCTTCTCTTGA+AGG | 0.392101 | 4.3:-37968008 | MS.gene54601:CDS |
| TCTGAATTATCAACACTTTG+TGG | 0.392582 | 4.3:-37968877 | MS.gene54601:CDS |
| TTGAAGGCTTTGGAAAGTTA+TGG | 0.393387 | 4.3:-37968646 | MS.gene54601:CDS |
| GCATGTTGCGGAAGCTCATC+AGG | 0.403902 | 4.3:-37968674 | MS.gene54601:CDS |
| CTTGCTATGGATTGAGAAGA+AGG | 0.408194 | 4.3:+37968796 | None:intergenic |
| GCAGGAAAACCATATTGTTA+TGG | 0.420932 | 4.3:-37968823 | MS.gene54601:CDS |
| TCACTTGCACGGTCAAGGTT+TGG | 0.423194 | 4.3:+37967966 | None:intergenic |
| CTGAATTATCAACACTTTGT+GGG | 0.424852 | 4.3:-37968876 | MS.gene54601:CDS |
| CTACCTCTTGATGTCCTCTT+CGG | 0.429458 | 4.3:+37968988 | None:intergenic |
| CTTCAAAATTGTTCTTGCTA+TGG | 0.431100 | 4.3:+37968783 | None:intergenic |
| CATTTCCACTTTCACTTGCA+CGG | 0.448306 | 4.3:+37967955 | None:intergenic |
| ATTCTTATTATTTCTCCAGC+AGG | 0.453510 | 4.3:-37968841 | MS.gene54601:CDS |
| CACTTTCACTTGCACGGTCA+AGG | 0.460125 | 4.3:+37967961 | None:intergenic |
| AATTTCATAACCGTTGTTGT+TGG | 0.462889 | 4.3:+37968304 | None:intergenic |
| AGACATAAGGAGGATTTGTC+TGG | 0.473975 | 4.3:+37968333 | None:intergenic |
| CTTGACCGTGCAAGTGAAAG+TGG | 0.475104 | 4.3:-37967960 | MS.gene54601:CDS |
| TTGTTGGCCCCAAAGACATA+AGG | 0.478695 | 4.3:+37968320 | None:intergenic |
| TTTAATTCTTCTTCTACCGA+AGG | 0.479866 | 4.3:+37968751 | None:intergenic |
| AGCTCATCAGGAAAGTTTGA+AGG | 0.487303 | 4.3:-37968662 | MS.gene54601:CDS |
| CGTGCAAGTGAAAGTGGAAA+TGG | 0.489776 | 4.3:-37967954 | MS.gene54601:CDS |
| ATTTATGATCCAAAAGGAAA+AGG | 0.506756 | 4.3:-37968035 | MS.gene54601:CDS |
| TCCCAGATTTATGATCCAAA+AGG | 0.515467 | 4.3:-37968041 | MS.gene54601:CDS |
| TTTGAAGAATGAAAACCCTT+CGG | 0.527588 | 4.3:-37968767 | MS.gene54601:CDS |
| TCTTGCATAGATGAACTGAA+TGG | 0.533604 | 4.3:-37968359 | MS.gene54601:CDS |
| TTAATTCTTCTTCTACCGAA+GGG | 0.546382 | 4.3:+37968752 | None:intergenic |
| ATAAGTAGTGTCTTAAGCAA+TGG | 0.548667 | 4.3:-37968529 | MS.gene54601:CDS |
| TGAATTATCAACACTTTGTG+GGG | 0.569118 | 4.3:-37968875 | MS.gene54601:CDS |
| GTCTTTGGGGCCAACAACAA+CGG | 0.574083 | 4.3:-37968314 | MS.gene54601:CDS |
| GGAGGAGAGATTAATCCTCA+TGG | 0.604055 | 4.3:-37968508 | MS.gene54601:intron |
| AAATCCTCCTTATGTCTTTG+GGG | 0.607760 | 4.3:-37968327 | MS.gene54601:CDS |
| AGTAGTGTCTTAAGCAATGG+AGG | 0.611596 | 4.3:-37968526 | MS.gene54601:CDS |
| TTGGCCCCAAAGACATAAGG+AGG | 0.611952 | 4.3:+37968323 | None:intergenic |
| ACAAAGTGTTGATAATTCAG+AGG | 0.616841 | 4.3:+37968879 | None:intergenic |
| TGATCCAAAAGGAAAAGGCA+AGG | 0.624272 | 4.3:-37968030 | MS.gene54601:CDS |
| TTTGGATGAAAAGCATGTTG+CGG | 0.629913 | 4.3:-37968686 | MS.gene54601:CDS |
| TGGTTAAGATGGCTCCGAAG+AGG | 0.660173 | 4.3:-37969002 | None:intergenic |
| GCTCCGAAGAGGACATCAAG+AGG | 0.673948 | 4.3:-37968991 | MS.gene54601:CDS |
| GAAGGTAGAAATAAAACACA+AGG | 0.705496 | 4.3:-37967990 | MS.gene54601:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTTATTTATGAAAAAG+TGG | - | chr4.3:37968509-37968528 | MS.gene54601:CDS | 15.0% |
| !! | GAAATTATACAATATGTGTT+AGG | + | chr4.3:37968833-37968852 | None:intergenic | 20.0% |
| !! | TTATGACCAGTTAAAAAAAT+TGG | - | chr4.3:37968330-37968349 | MS.gene54601:CDS | 20.0% |
| !!! | AATGTCTTCATATCTTTTTT+TGG | + | chr4.3:37968785-37968804 | None:intergenic | 20.0% |
| !!! | ATGTCTTCATATCTTTTTTT+GGG | + | chr4.3:37968784-37968803 | None:intergenic | 20.0% |
| !!! | TACTCTTGTTTATATGAATT+TGG | + | chr4.3:37968658-37968677 | None:intergenic | 20.0% |
| ! | AGTATAGATATTTGATGTGT+TGG | + | chr4.3:37968699-37968718 | None:intergenic | 25.0% |
| ! | ATTTATGATCCAAAAGGAAA+AGG | - | chr4.3:37968879-37968898 | MS.gene54601:CDS | 25.0% |
| ! | GCATTAAAAATGGTTAAAGT+TGG | + | chr4.3:37968723-37968742 | None:intergenic | 25.0% |
| ! | TCTCATAAGTGCATTAAAAA+TGG | + | chr4.3:37968733-37968752 | None:intergenic | 25.0% |
| !!! | ATGTGTCCAATTTTTTTAAC+TGG | + | chr4.3:37968339-37968358 | None:intergenic | 25.0% |
| AAAATTGGACACATCTTTAG+TGG | - | chr4.3:37968345-37968364 | MS.gene54601:CDS | 30.0% | |
| AACAACAACGGTTATGAAAT+TGG | - | chr4.3:37968612-37968631 | MS.gene54601:CDS | 30.0% | |
| AATTTCATAACCGTTGTTGT+TGG | + | chr4.3:37968613-37968632 | None:intergenic | 30.0% | |
| ATAAGTAGTGTCTTAAGCAA+TGG | - | chr4.3:37968385-37968404 | MS.gene54601:intron | 30.0% | |
| CTGAATTATCAACACTTTGT+GGG | - | chr4.3:37968038-37968057 | MS.gene54601:CDS | 30.0% | |
| CTTCAAAATTGTTCTTGCTA+TGG | + | chr4.3:37968134-37968153 | None:intergenic | 30.0% | |
| GAAGGTAGAAATAAAACACA+AGG | - | chr4.3:37968924-37968943 | MS.gene54601:CDS | 30.0% | |
| TCTGAATTATCAACACTTTG+TGG | - | chr4.3:37968037-37968056 | MS.gene54601:CDS | 30.0% | |
| TGAATTATCAACACTTTGTG+GGG | - | chr4.3:37968039-37968058 | MS.gene54601:CDS | 30.0% | |
| TGTACATCTTCTAATCAACT+TGG | - | chr4.3:37968433-37968452 | MS.gene54601:intron | 30.0% | |
| TTAATTCTTCTTCTACCGAA+GGG | + | chr4.3:37968165-37968184 | None:intergenic | 30.0% | |
| TTTAATTCTTCTTCTACCGA+AGG | + | chr4.3:37968166-37968185 | None:intergenic | 30.0% | |
| TTTGAAGAATGAAAACCCTT+CGG | - | chr4.3:37968147-37968166 | MS.gene54601:intron | 30.0% | |
| ! | ATTCTTATTATTTCTCCAGC+AGG | - | chr4.3:37968073-37968092 | MS.gene54601:intron | 30.0% |
| ! | CACAAAAAATGATGAGCTTT+TGG | - | chr4.3:37968210-37968229 | MS.gene54601:intron | 30.0% |
| ! | GCATTTTCAAAAAGAAAGTC+TGG | - | chr4.3:37967998-37968017 | MS.gene54601:CDS | 30.0% |
| ! | TCCTTTTGGATCATAAATCT+GGG | + | chr4.3:37968877-37968896 | None:intergenic | 30.0% |
| ! | TTCCTTTTGGATCATAAATC+TGG | + | chr4.3:37968878-37968897 | None:intergenic | 30.0% |
| !! | ACAAAGTGTTGATAATTCAG+AGG | + | chr4.3:37968038-37968057 | None:intergenic | 30.0% |
| AAATCCTCCTTATGTCTTTG+GGG | - | chr4.3:37968587-37968606 | MS.gene54601:CDS | 35.0% | |
| ACAAATCCTCCTTATGTCTT+TGG | - | chr4.3:37968585-37968604 | MS.gene54601:CDS | 35.0% | |
| CAAATCCTCCTTATGTCTTT+GGG | - | chr4.3:37968586-37968605 | MS.gene54601:CDS | 35.0% | |
| GAAGGTTCTCCATAACAATA+TGG | + | chr4.3:37968103-37968122 | None:intergenic | 35.0% | |
| GATGTTATTGCTTCTCTTGA+AGG | - | chr4.3:37968906-37968925 | MS.gene54601:CDS | 35.0% | |
| GCAGGAAAACCATATTGTTA+TGG | - | chr4.3:37968091-37968110 | MS.gene54601:intron | 35.0% | |
| TATGTGTTAGGTTTATCGCA+TGG | + | chr4.3:37968821-37968840 | None:intergenic | 35.0% | |
| TCCCAGATTTATGATCCAAA+AGG | - | chr4.3:37968873-37968892 | MS.gene54601:CDS | 35.0% | |
| TCTTGCATAGATGAACTGAA+TGG | - | chr4.3:37968555-37968574 | MS.gene54601:CDS | 35.0% | |
| TTTCTTGTCATTGAAGCTCA+TGG | - | chr4.3:37968849-37968868 | MS.gene54601:CDS | 35.0% | |
| ! | CTTTGGAAAGTTATGGCTAT+TGG | - | chr4.3:37968275-37968294 | MS.gene54601:intron | 35.0% |
| ! | TAACAATATGGTTTTCCTGC+TGG | + | chr4.3:37968091-37968110 | None:intergenic | 35.0% |
| ! | TTTGGATGAAAAGCATGTTG+CGG | - | chr4.3:37968228-37968247 | MS.gene54601:intron | 35.0% |
| !! | TTGAAGGCTTTGGAAAGTTA+TGG | - | chr4.3:37968268-37968287 | MS.gene54601:intron | 35.0% |
| AGACATAAGGAGGATTTGTC+TGG | + | chr4.3:37968584-37968603 | None:intergenic | 40.0% | |
| AGCTCATCAGGAAAGTTTGA+AGG | - | chr4.3:37968252-37968271 | MS.gene54601:intron | 40.0% | |
| AGTAGTGTCTTAAGCAATGG+AGG | - | chr4.3:37968388-37968407 | MS.gene54601:intron | 40.0% | |
| CATTTCCACTTTCACTTGCA+CGG | + | chr4.3:37968962-37968981 | None:intergenic | 40.0% | |
| TCAGGAAAGTTTGAAGGCTT+TGG | - | chr4.3:37968258-37968277 | MS.gene54601:intron | 40.0% | |
| TGATCCAAAAGGAAAAGGCA+AGG | - | chr4.3:37968884-37968903 | MS.gene54601:CDS | 40.0% | |
| ! | ACATCCTTGCCTTTTCCTTT+TGG | + | chr4.3:37968891-37968910 | None:intergenic | 40.0% |
| ! | CTTGCTATGGATTGAGAAGA+AGG | + | chr4.3:37968121-37968140 | None:intergenic | 40.0% |
| CGTGCAAGTGAAAGTGGAAA+TGG | - | chr4.3:37968960-37968979 | MS.gene54601:CDS | 45.0% | |
| CTACCTCTTGATGTCCTCTT+CGG | + | chr4.3:37967929-37967948 | None:intergenic | 45.0% | |
| GAAGATGTACACGTACCATG+AGG | + | chr4.3:37968424-37968443 | None:intergenic | 45.0% | |
| GGAGGAGAGATTAATCCTCA+TGG | - | chr4.3:37968406-37968425 | MS.gene54601:intron | 45.0% | |
| TTGTTGGCCCCAAAGACATA+AGG | + | chr4.3:37968597-37968616 | None:intergenic | 45.0% | |
| CACTTTCACTTGCACGGTCA+AGG | + | chr4.3:37968956-37968975 | None:intergenic | 50.0% | |
| CTTGACCGTGCAAGTGAAAG+TGG | - | chr4.3:37968954-37968973 | MS.gene54601:CDS | 50.0% | |
| TCACTTGCACGGTCAAGGTT+TGG | + | chr4.3:37968951-37968970 | None:intergenic | 50.0% | |
| TTGGCCCCAAAGACATAAGG+AGG | + | chr4.3:37968594-37968613 | None:intergenic | 50.0% | |
| !! | GTCTTTGGGGCCAACAACAA+CGG | - | chr4.3:37968600-37968619 | MS.gene54601:CDS | 50.0% |
| GCATGTTGCGGAAGCTCATC+AGG | - | chr4.3:37968240-37968259 | MS.gene54601:intron | 55.0% | |
| GCTCCGAAGAGGACATCAAG+AGG | - | chr4.3:37967923-37967942 | MS.gene54601:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 37967920 | 37969016 | 37967920 | ID=MS.gene54601 |
| chr4.3 | mRNA | 37967920 | 37969016 | 37967920 | ID=MS.gene54601.t1;Parent=MS.gene54601 |
| chr4.3 | exon | 37968509 | 37969016 | 37968509 | ID=MS.gene54601.t1.exon1;Parent=MS.gene54601.t1 |
| chr4.3 | CDS | 37968509 | 37969016 | 37968509 | ID=cds.MS.gene54601.t1;Parent=MS.gene54601.t1 |
| chr4.3 | exon | 37968297 | 37968386 | 37968297 | ID=MS.gene54601.t1.exon2;Parent=MS.gene54601.t1 |
| chr4.3 | CDS | 37968297 | 37968386 | 37968297 | ID=cds.MS.gene54601.t1;Parent=MS.gene54601.t1 |
| chr4.3 | exon | 37967920 | 37968071 | 37967920 | ID=MS.gene54601.t1.exon3;Parent=MS.gene54601.t1 |
| chr4.3 | CDS | 37967920 | 37968071 | 37967920 | ID=cds.MS.gene54601.t1;Parent=MS.gene54601.t1 |
| Gene Sequence |
| Protein sequence |
