Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54613.t1 | XP_003611383.2 | 96.6 | 499 | 11 | 1 | 1 | 493 | 1 | 499 | 1.70E-275 | 958 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54613.t1 | Q8W4H1 | 50.2 | 516 | 203 | 15 | 1 | 470 | 1 | 508 | 5.7e-118 | 426.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54613.t1 | G7JYK7 | 96.6 | 499 | 11 | 1 | 1 | 493 | 1 | 499 | 1.2e-275 | 958.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene54613.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54613.t1 | MTR_5g013370 | 96.593 | 499 | 11 | 1 | 1 | 493 | 1 | 499 | 0.0 | 1002 |
MS.gene54613.t1 | MTR_5g013370 | 96.247 | 373 | 8 | 1 | 1 | 367 | 1 | 373 | 0.0 | 751 |
MS.gene54613.t1 | MTR_4g099410 | 64.603 | 517 | 128 | 8 | 15 | 479 | 20 | 533 | 0.0 | 612 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54613.t1 | AT4G17570 | 50.097 | 515 | 209 | 12 | 1 | 470 | 1 | 512 | 2.76e-141 | 416 |
MS.gene54613.t1 | AT4G17570 | 49.515 | 515 | 208 | 13 | 1 | 470 | 1 | 508 | 2.55e-136 | 403 |
MS.gene54613.t1 | AT4G17570 | 49.102 | 501 | 207 | 12 | 15 | 470 | 27 | 524 | 6.57e-129 | 385 |
MS.gene54613.t1 | AT5G47140 | 48.473 | 491 | 209 | 13 | 1 | 470 | 1 | 468 | 2.34e-123 | 369 |
Find 91 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTCTTTGTGATAATTCTTT+TGG | 0.201366 | 5.3:-6467587 | None:intergenic |
TATCTTCATCAAAAGCCTTT+TGG | 0.231803 | 5.3:-6464948 | None:intergenic |
AGCTCTCTTTCATTTGATAA+TGG | 0.271694 | 5.3:+6466123 | MS.gene54613:CDS |
CGCCTTTGATATCTCTTTGC+CGG | 0.285823 | 5.3:+6466938 | MS.gene54613:CDS |
TTCAAAGTCTCGCAGTCTTC+AGG | 0.296864 | 5.3:-6466969 | None:intergenic |
ACCAAATTGTGCGCAGCTTT+CGG | 0.305747 | 5.3:-6465010 | None:intergenic |
AGTGACGCATATTCTTATTC+TGG | 0.322140 | 5.3:+6466159 | MS.gene54613:CDS |
CATCAGGAGGCAAAGGAAAT+AGG | 0.324121 | 5.3:-6467627 | None:intergenic |
TCCGAAAGCTGCGCACAATT+TGG | 0.336033 | 5.3:+6465009 | MS.gene54613:CDS |
GACCTGCTCAGTCAGTGGTC+TGG | 0.355510 | 5.3:+6465851 | MS.gene54613:CDS |
AACCACTATAATGTAGTATC+TGG | 0.362580 | 5.3:+6464895 | MS.gene54613:CDS |
ACCTGCTCAGTCAGTGGTCT+GGG | 0.368180 | 5.3:+6465852 | MS.gene54613:CDS |
TTGTTGTTTGTGCAGCCTTA+AGG | 0.373323 | 5.3:+6466851 | MS.gene54613:intron |
ATGAGTTGTCAAAGTCGAAA+TGG | 0.378385 | 5.3:+6467006 | MS.gene54613:CDS |
TAAGAATATGCGTCACTCAT+TGG | 0.378524 | 5.3:-6466153 | None:intergenic |
AGCAGAAATCAGAACTTTCC+AGG | 0.401146 | 5.3:+6467234 | MS.gene54613:CDS |
AAGAATATGCGTCACTCATT+GGG | 0.411487 | 5.3:-6466152 | None:intergenic |
TTGCATAGTATTGGCTTCTC+TGG | 0.427042 | 5.3:-6464712 | None:intergenic |
GCACACCACTTTGGCGCAAT+GGG | 0.430676 | 5.3:+6464686 | MS.gene54613:CDS |
CCACATGCATTGCATAGTAT+TGG | 0.431658 | 5.3:-6464721 | None:intergenic |
ATGAGTAATCGATCAAGTTC+AGG | 0.432484 | 5.3:+6464970 | MS.gene54613:CDS |
CCAATGGTCTCTGTCGAGAT+AGG | 0.442024 | 5.3:+6466039 | MS.gene54613:CDS |
TTACACACCTTTACATGCTC+GGG | 0.442559 | 5.3:+6464777 | MS.gene54613:CDS |
CTGCACCCAACTTCATACTT+TGG | 0.442894 | 5.3:+6467754 | MS.gene54613:CDS |
TTTCAGCAGCTTCTTGCAAA+AGG | 0.446745 | 5.3:+6466915 | MS.gene54613:CDS |
TCTCTTCACATTTGCAACAT+TGG | 0.446975 | 5.3:-6467202 | None:intergenic |
ATGCATGTGGTTCGCGGTGG+AGG | 0.452122 | 5.3:+6464734 | MS.gene54613:CDS |
GTGAGCTTCTCAACAGAAGA+TGG | 0.452294 | 5.3:-6465931 | None:intergenic |
AGCAAGTGTGAGCTTGCATC+AGG | 0.455435 | 5.3:-6467643 | None:intergenic |
TGCAGCCTTAAGGTCATGTT+CGG | 0.457133 | 5.3:+6466861 | MS.gene54613:intron |
AAGAAGTGAACTTGCTCAAA+CGG | 0.458776 | 5.3:+6464866 | MS.gene54613:CDS |
ATTACACACCTTTACATGCT+CGG | 0.466186 | 5.3:+6464776 | MS.gene54613:CDS |
GGCACACCACTTTGGCGCAA+TGG | 0.466586 | 5.3:+6464685 | MS.gene54613:intron |
TGCGGAAAAGAATTATTAGA+AGG | 0.469116 | 5.3:-6467721 | None:intergenic |
CTGGAAAGAGTACAAATCCT+TGG | 0.472378 | 5.3:+6466430 | MS.gene54613:CDS |
TTGATGATCAAAGGGCTTCA+AGG | 0.472955 | 5.3:+6464815 | MS.gene54613:CDS |
GTTCGGTAGCTCTCAATTCA+AGG | 0.476255 | 5.3:+6466878 | MS.gene54613:CDS |
ACAGATGCTAGTGATCTAAC+AGG | 0.476473 | 5.3:+6465036 | MS.gene54613:CDS |
TGAGCACCAAAGTATGAAGT+TGG | 0.490384 | 5.3:-6467760 | None:intergenic |
GAGTAGAATTCTAACCCATC+AGG | 0.493607 | 5.3:-6466724 | None:intergenic |
TTGCAACAGGCACACCACTT+TGG | 0.494644 | 5.3:+6464677 | MS.gene54613:intron |
TGAGTTGTCAAAGTCGAAAT+GGG | 0.496810 | 5.3:+6467007 | MS.gene54613:CDS |
GATGCTATACCAGCAGATCC+TGG | 0.497891 | 5.3:-6467177 | None:intergenic |
TCGGATGTTCCAGGATCTGC+TGG | 0.499260 | 5.3:+6467168 | MS.gene54613:CDS |
TTTCAGTGACAAGTCTCAGC+TGG | 0.499546 | 5.3:+6466411 | MS.gene54613:intron |
CGATGCAGAGATGTAAAAGT+AGG | 0.503787 | 5.3:+6467136 | MS.gene54613:intron |
GACATGGAAGTGTTCTCATT+AGG | 0.509357 | 5.3:+6466061 | MS.gene54613:CDS |
CATAGTATTGGCTTCTCTGG+TGG | 0.517941 | 5.3:-6464709 | None:intergenic |
AGCTACCGAACATGACCTTA+AGG | 0.523689 | 5.3:-6466866 | None:intergenic |
CTCCAGATACTACATTATAG+TGG | 0.528306 | 5.3:-6464897 | None:intergenic |
TGCTGAGCTACTACTAGTGC+TGG | 0.529471 | 5.3:-6467785 | None:intergenic |
ATTATTGAAGTTTCTTCCTG+TGG | 0.538673 | 5.3:+6466684 | MS.gene54613:CDS |
TTACAACCAGGGATTCCAAA+AGG | 0.539474 | 5.3:+6464933 | MS.gene54613:CDS |
GAGCACCAAAGTATGAAGTT+GGG | 0.542626 | 5.3:-6467759 | None:intergenic |
TCGTCGCGAGCTACATAACT+AGG | 0.544739 | 5.3:-6466087 | None:intergenic |
TTCTGAGACATGGGTAAACA+AGG | 0.546162 | 5.3:+6463301 | None:intergenic |
TTATGAAAGTGAAGCACCAA+TGG | 0.548282 | 5.3:+6466023 | MS.gene54613:CDS |
GTTTCAGCCCGAGCATGTAA+AGG | 0.551747 | 5.3:-6464784 | None:intergenic |
GGTTCGCGGTGGAGGACAAA+GGG | 0.557202 | 5.3:+6464742 | MS.gene54613:CDS |
GATACTGCTAAACTTCCTGA+TGG | 0.560155 | 5.3:+6466709 | MS.gene54613:CDS |
TCCCAGACCACTGACTGAGC+AGG | 0.563264 | 5.3:-6465853 | None:intergenic |
TGGTTCGCGGTGGAGGACAA+AGG | 0.567138 | 5.3:+6464741 | MS.gene54613:CDS |
TTTAGGACCTGCTCAGTCAG+TGG | 0.572891 | 5.3:+6465846 | MS.gene54613:intron |
AGTTTAGCAGTATCAACCAC+AGG | 0.576633 | 5.3:-6466700 | None:intergenic |
GAAAGCTGCGCACAATTTGG+TGG | 0.579311 | 5.3:+6465012 | MS.gene54613:CDS |
CAGAGATGAAGACAATAATG+AGG | 0.584067 | 5.3:+6467560 | MS.gene54613:intron |
CACTTGTAACTCCACAGTGA+TGG | 0.587666 | 5.3:-6463330 | None:intergenic |
GAGCTTGCATCAGGAGGCAA+AGG | 0.591960 | 5.3:-6467634 | None:intergenic |
ATTTAAATCTACAAAACACA+AGG | 0.595356 | 5.3:-6466467 | None:intergenic |
GATGCAGAGATGTAAAAGTA+GGG | 0.597722 | 5.3:+6467137 | MS.gene54613:intron |
GTCTCTGTCGAGATAGGACA+TGG | 0.606101 | 5.3:+6466045 | MS.gene54613:CDS |
ATACTGCTAAACTTCCTGAT+GGG | 0.607368 | 5.3:+6466710 | MS.gene54613:CDS |
AGCTCGCGACGAAGAGTCTG+AGG | 0.607702 | 5.3:+6466098 | MS.gene54613:CDS |
TATGCAATGCATGTGGTTCG+CGG | 0.611941 | 5.3:+6464728 | MS.gene54613:CDS |
CCTATCTCGACAGAGACCAT+TGG | 0.618260 | 5.3:-6466039 | None:intergenic |
GTAACTCCACAGTGATGGCA+AGG | 0.624432 | 5.3:-6463325 | None:intergenic |
CTTGCATCTGATTACAACCA+GGG | 0.633133 | 5.3:+6464922 | MS.gene54613:CDS |
CACTATAATGTAGTATCTGG+AGG | 0.635640 | 5.3:+6464898 | MS.gene54613:CDS |
AGGGTGAATCATGATTTCCA+AGG | 0.637136 | 5.3:-6466447 | None:intergenic |
AAGTGTGAGCTTGCATCAGG+AGG | 0.639748 | 5.3:-6467640 | None:intergenic |
ACTTGCATCTGATTACAACC+AGG | 0.649715 | 5.3:+6464921 | MS.gene54613:CDS |
GTTGTCAAAGTCGAAATGGG+TGG | 0.657876 | 5.3:+6467010 | MS.gene54613:CDS |
ATCCGGCAAAGAGATATCAA+AGG | 0.663680 | 5.3:-6466940 | None:intergenic |
CCAATACTATGCAATGCATG+TGG | 0.675078 | 5.3:+6464721 | MS.gene54613:CDS |
GGTGGCCCATTGCGCCAAAG+TGG | 0.675260 | 5.3:-6464691 | None:intergenic |
TTTAAATCTACAAAACACAA+GGG | 0.680510 | 5.3:-6466466 | None:intergenic |
GGGTGCAGAAGTTCTGCCTG+CGG | 0.683148 | 5.3:-6467739 | None:intergenic |
GGTGGAACACTATCATAACA+AGG | 0.694043 | 5.3:+6467028 | MS.gene54613:CDS |
GCAATGCATGTGGTTCGCGG+TGG | 0.695010 | 5.3:+6464731 | MS.gene54613:CDS |
CAAGGACCTTGCCATCACTG+TGG | 0.727560 | 5.3:+6463319 | MS.gene54613:CDS |
TAAACTATGAAGAATTTACG+AGG | 0.736561 | 5.3:+6466635 | MS.gene54613:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATTATAAATATATAT+TGG | - | chr5.3:6463369-6463388 | None:intergenic | 0.0% |
!! | AATATAAACTAAGAAAAATT+AGG | + | chr5.3:6463440-6463459 | MS.gene54613:intron | 10.0% |
!!! | TGTTGTATAATTTTTTTTAA+AGG | - | chr5.3:6466758-6466777 | None:intergenic | 10.0% |
!! | ATTTACAATAAAATGTTAGT+AGG | + | chr5.3:6466544-6466563 | MS.gene54613:intron | 15.0% |
!!! | AACATAATTGTTATTATGTT+TGG | + | chr5.3:6466601-6466620 | MS.gene54613:intron | 15.0% |
!!! | TAAAATACATACTATTTTGA+AGG | - | chr5.3:6465119-6465138 | None:intergenic | 15.0% |
!!! | TAAATTTGCTGATATTATTT+TGG | + | chr5.3:6466341-6466360 | MS.gene54613:intron | 15.0% |
!! | AAAAAATGGATAGTGAAATA+AGG | + | chr5.3:6465152-6465171 | MS.gene54613:intron | 20.0% |
!! | AAGAAGATATTGATACAAAA+GGG | - | chr5.3:6464452-6464471 | None:intergenic | 20.0% |
!! | AATGAAAAAAAGAATTGAAG+AGG | + | chr5.3:6465515-6465534 | MS.gene54613:intron | 20.0% |
!! | ACAAATCATATATGTAAACA+CGG | - | chr5.3:6465681-6465700 | None:intergenic | 20.0% |
!! | ATCATTGATGAATAAATCAA+TGG | - | chr5.3:6467402-6467421 | None:intergenic | 20.0% |
!! | ATTTAAATCTACAAAACACA+AGG | - | chr5.3:6466470-6466489 | None:intergenic | 20.0% |
!! | ATTTATACAGATTCAAAAGT+AGG | + | chr5.3:6463485-6463504 | MS.gene54613:intron | 20.0% |
!! | TTTAAATCTACAAAACACAA+GGG | - | chr5.3:6466469-6466488 | None:intergenic | 20.0% |
!! | TTTGTGAAAAAACAAAAGAT+AGG | - | chr5.3:6465795-6465814 | None:intergenic | 20.0% |
!!! | AATTGTTATTATGTTTGGTT+AGG | + | chr5.3:6466606-6466625 | MS.gene54613:intron | 20.0% |
!!! | ATTCATTTTTGTCTTCTAAA+AGG | + | chr5.3:6464008-6464027 | MS.gene54613:intron | 20.0% |
!!! | ATTTATTGTTTGGTTGATTT+AGG | + | chr5.3:6465829-6465848 | MS.gene54613:intron | 20.0% |
!!! | CACAGATTTATAAAACTTTT+TGG | - | chr5.3:6464165-6464184 | None:intergenic | 20.0% |
!!! | CATATAAGAATCAACTTTTT+TGG | - | chr5.3:6466268-6466287 | None:intergenic | 20.0% |
!!! | TTCATGTATTCTTATTTCAA+TGG | + | chr5.3:6463941-6463960 | MS.gene54613:intron | 20.0% |
! | AACTAACTGGAAAAAGATTA+AGG | + | chr5.3:6463645-6463664 | MS.gene54613:intron | 25.0% |
! | ACAATGATTCATTATCTATG+CGG | + | chr5.3:6467364-6467383 | MS.gene54613:intron | 25.0% |
! | ACTAACTGGAAAAAGATTAA+GGG | + | chr5.3:6463646-6463665 | MS.gene54613:intron | 25.0% |
! | AGCGTATTCAAATGTTAATT+AGG | - | chr5.3:6465448-6465467 | None:intergenic | 25.0% |
! | ATGATGTTGTATTAAGCATT+TGG | + | chr5.3:6463512-6463531 | MS.gene54613:intron | 25.0% |
! | ATTTCAATGGAAATGAGATA+AGG | + | chr5.3:6463954-6463973 | MS.gene54613:intron | 25.0% |
! | CAAGAAGATATTGATACAAA+AGG | - | chr5.3:6464453-6464472 | None:intergenic | 25.0% |
! | CATTAACATTTAACAGTATC+AGG | - | chr5.3:6463894-6463913 | None:intergenic | 25.0% |
! | CTTTATATTACGTTGAAATG+CGG | + | chr5.3:6463749-6463768 | MS.gene54613:intron | 25.0% |
! | GACAAAAATGAATCAAATTG+TGG | - | chr5.3:6464001-6464020 | None:intergenic | 25.0% |
! | GTAAAAAATTTCTTGATCAG+AGG | - | chr5.3:6465726-6465745 | None:intergenic | 25.0% |
! | TAAACTATGAAGAATTTACG+AGG | + | chr5.3:6466635-6466654 | MS.gene54613:CDS | 25.0% |
! | TAACAAATCGTAAATCTTGA+TGG | - | chr5.3:6466831-6466850 | None:intergenic | 25.0% |
! | TATATCAACCACATTTATTG+CGG | + | chr5.3:6465572-6465591 | MS.gene54613:intron | 25.0% |
! | TATTAATTGTCCAACTTTGA+AGG | - | chr5.3:6467333-6467352 | None:intergenic | 25.0% |
! | TCATGAAAACATGTTATCTA+AGG | - | chr5.3:6465648-6465667 | None:intergenic | 25.0% |
! | TGTTAATTAGGTTTATCTCA+TGG | - | chr5.3:6465436-6465455 | None:intergenic | 25.0% |
! | TTCATAACTGATTAAAGCAT+TGG | + | chr5.3:6465088-6465107 | MS.gene54613:intron | 25.0% |
! | TTCTTTCACTAGAATAAACA+TGG | + | chr5.3:6466204-6466223 | MS.gene54613:intron | 25.0% |
! | TTTCAATGGAAATGAGATAA+GGG | + | chr5.3:6463955-6463974 | MS.gene54613:intron | 25.0% |
!! | AGTCTTTGTGATAATTCTTT+TGG | - | chr5.3:6467590-6467609 | None:intergenic | 25.0% |
!! | ATCATACATGAGACTTTTTA+AGG | + | chr5.3:6466787-6466806 | MS.gene54613:intron | 25.0% |
!! | GAATATTGTTTGTTAGAACT+TGG | + | chr5.3:6464602-6464621 | MS.gene54613:intron | 25.0% |
!! | GTCTTTGTGATAATTCTTTT+GGG | - | chr5.3:6467589-6467608 | None:intergenic | 25.0% |
!! | TCATAACTGATTAAAGCATT+GGG | + | chr5.3:6465089-6465108 | MS.gene54613:intron | 25.0% |
!! | TCATACATGAGACTTTTTAA+GGG | + | chr5.3:6466788-6466807 | MS.gene54613:intron | 25.0% |
!! | TCTTTGTGATAATTCTTTTG+GGG | - | chr5.3:6467588-6467607 | None:intergenic | 25.0% |
!!! | ACATGTTCATAAGTTGTTTT+CGG | - | chr5.3:6465360-6465379 | None:intergenic | 25.0% |
!!! | AGATTCTTTTAACTTTGTTG+AGG | + | chr5.3:6467666-6467685 | MS.gene54613:CDS | 25.0% |
!!! | ATGGTTTAAATTTTTTGTCG+CGG | + | chr5.3:6463707-6463726 | MS.gene54613:intron | 25.0% |
!!! | ATTCTTTTTTTCATTGTCGA+TGG | - | chr5.3:6465510-6465529 | None:intergenic | 25.0% |
!!! | TGATGATTTTGATGATCAAA+GGG | + | chr5.3:6464807-6464826 | MS.gene54613:CDS | 25.0% |
!!! | TTATTTTTTTGCGTGTAACT+TGG | + | chr5.3:6466299-6466318 | MS.gene54613:intron | 25.0% |
AACAAAGATGTATCTCAGAT+TGG | - | chr5.3:6464636-6464655 | None:intergenic | 30.0% | |
AACCACTATAATGTAGTATC+TGG | + | chr5.3:6464895-6464914 | MS.gene54613:CDS | 30.0% | |
AGCTCTCTTTCATTTGATAA+TGG | + | chr5.3:6466123-6466142 | MS.gene54613:CDS | 30.0% | |
ATCATACGTAACTGTTTAAG+TGG | + | chr5.3:6464510-6464529 | MS.gene54613:intron | 30.0% | |
ATGTTAGCACAGTCAAAAAA+TGG | + | chr5.3:6465138-6465157 | MS.gene54613:intron | 30.0% | |
ATGTTCAATACTCTTAGACT+TGG | + | chr5.3:6464329-6464348 | MS.gene54613:intron | 30.0% | |
ATTATTGAAGTTTCTTCCTG+TGG | + | chr5.3:6466684-6466703 | MS.gene54613:CDS | 30.0% | |
CATATATGTAAACACGGAAT+TGG | - | chr5.3:6465675-6465694 | None:intergenic | 30.0% | |
CGCATTTCAACGTAATATAA+AGG | - | chr5.3:6463751-6463770 | None:intergenic | 30.0% | |
CTAACTGGAAAAAGATTAAG+GGG | + | chr5.3:6463647-6463666 | MS.gene54613:intron | 30.0% | |
GATTCCTCAGTTAAATCATA+AGG | - | chr5.3:6467514-6467533 | None:intergenic | 30.0% | |
TAAAAGTAGGGCTGAAAAAT+CGG | + | chr5.3:6467149-6467168 | MS.gene54613:CDS | 30.0% | |
TACAATACTGATCACCTTAA+TGG | + | chr5.3:6464203-6464222 | MS.gene54613:intron | 30.0% | |
TACTCCTTATGATTTAACTG+AGG | + | chr5.3:6467507-6467526 | MS.gene54613:intron | 30.0% | |
TAGTAGAAGTAGTTCCATTA+AGG | - | chr5.3:6464220-6464239 | None:intergenic | 30.0% | |
TAGTTCAATACTTGATTGTG+AGG | - | chr5.3:6464477-6464496 | None:intergenic | 30.0% | |
TATTCTCCTAGTTGAATTCT+TGG | + | chr5.3:6466498-6466517 | MS.gene54613:intron | 30.0% | |
TGCGGAAAAGAATTATTAGA+AGG | - | chr5.3:6467724-6467743 | None:intergenic | 30.0% | |
TGTAATCTGTACATCAAAAC+TGG | + | chr5.3:6465766-6465785 | MS.gene54613:intron | 30.0% | |
TTATATCAGTGTTTGGACTT+TGG | - | chr5.3:6465404-6465423 | None:intergenic | 30.0% | |
TTCAATGGAAATGAGATAAG+GGG | + | chr5.3:6463956-6463975 | MS.gene54613:intron | 30.0% | |
TTGATATAACAAGAGCTTCA+TGG | - | chr5.3:6465560-6465579 | None:intergenic | 30.0% | |
! | ATATCTGAGTTTTGCTTCTA+GGG | + | chr5.3:6465237-6465256 | MS.gene54613:intron | 30.0% |
! | CTTTTATATGCTTTGCGATT+TGG | + | chr5.3:6464563-6464582 | MS.gene54613:intron | 30.0% |
! | GTTTTTCTGAATCTTCTGAT+GGG | + | chr5.3:6465992-6466011 | MS.gene54613:CDS | 30.0% |
! | TATCTTCATCAAAAGCCTTT+TGG | - | chr5.3:6464951-6464970 | None:intergenic | 30.0% |
! | TATTGTTTGTTAGAACTTGG+CGG | + | chr5.3:6464605-6464624 | MS.gene54613:intron | 30.0% |
! | TCTTCGCATAGTTTAAAATC+CGG | - | chr5.3:6463868-6463887 | None:intergenic | 30.0% |
! | TGTTTTTCTGAATCTTCTGA+TGG | + | chr5.3:6465991-6466010 | MS.gene54613:CDS | 30.0% |
! | TTCTAATAATTCTTTTCCGC+AGG | + | chr5.3:6467723-6467742 | MS.gene54613:CDS | 30.0% |
! | TTTAAGATTTAACGCTAACC+TGG | - | chr5.3:6467255-6467274 | None:intergenic | 30.0% |
! | TTTGTTGCATTGATAGGAAA+TGG | + | chr5.3:6463688-6463707 | MS.gene54613:intron | 30.0% |
! | TTTTTCTGAATCTTCTGATG+GGG | + | chr5.3:6465993-6466012 | MS.gene54613:CDS | 30.0% |
!! | CACAATCAAGTATTGAACTA+TGG | + | chr5.3:6464477-6464496 | MS.gene54613:intron | 30.0% |
!! | CATACATGAGACTTTTTAAG+GGG | + | chr5.3:6466789-6466808 | MS.gene54613:intron | 30.0% |
!! | CTGATGATTTTGATGATCAA+AGG | + | chr5.3:6464806-6464825 | MS.gene54613:CDS | 30.0% |
!! | TTTTTGTTTCACTGTGTTTC+TGG | + | chr5.3:6463581-6463600 | MS.gene54613:intron | 30.0% |
AAGAATATGCGTCACTCATT+GGG | - | chr5.3:6466155-6466174 | None:intergenic | 35.0% | |
ACAATTTCTCAATGTGTCAG+AGG | + | chr5.3:6464066-6464085 | MS.gene54613:intron | 35.0% | |
AGAACTTTCCGCAATAAATG+TGG | - | chr5.3:6465583-6465602 | None:intergenic | 35.0% | |
AGTGACGCATATTCTTATTC+TGG | + | chr5.3:6466159-6466178 | MS.gene54613:CDS | 35.0% | |
ATACTGCTAAACTTCCTGAT+GGG | + | chr5.3:6466710-6466729 | MS.gene54613:CDS | 35.0% | |
ATGAGTAATCGATCAAGTTC+AGG | + | chr5.3:6464970-6464989 | MS.gene54613:CDS | 35.0% | |
ATGAGTTGTCAAAGTCGAAA+TGG | + | chr5.3:6467006-6467025 | MS.gene54613:CDS | 35.0% | |
ATTACACACCTTTACATGCT+CGG | + | chr5.3:6464776-6464795 | MS.gene54613:CDS | 35.0% | |
CAAGCACTTATATCAGTGTT+TGG | - | chr5.3:6465411-6465430 | None:intergenic | 35.0% | |
CACTATAATGTAGTATCTGG+AGG | + | chr5.3:6464898-6464917 | MS.gene54613:CDS | 35.0% | |
CAGAGATGAAGACAATAATG+AGG | + | chr5.3:6467560-6467579 | MS.gene54613:intron | 35.0% | |
CTAAGAACATATGTATCCTG+TGG | - | chr5.3:6464400-6464419 | None:intergenic | 35.0% | |
CTCCAGATACTACATTATAG+TGG | - | chr5.3:6464900-6464919 | None:intergenic | 35.0% | |
GAAATGAGATAAGGGGATTA+TGG | + | chr5.3:6463963-6463982 | MS.gene54613:intron | 35.0% | |
GATGCAGAGATGTAAAAGTA+GGG | + | chr5.3:6467137-6467156 | MS.gene54613:intron | 35.0% | |
GCTTGTTCTGTGTAATACTA+TGG | + | chr5.3:6463462-6463481 | MS.gene54613:intron | 35.0% | |
TAAGAATATGCGTCACTCAT+TGG | - | chr5.3:6466156-6466175 | None:intergenic | 35.0% | |
TCAAAAAAGAGGACATGTGT+TGG | + | chr5.3:6465895-6465914 | MS.gene54613:CDS | 35.0% | |
TCTCTTCACATTTGCAACAT+TGG | - | chr5.3:6467205-6467224 | None:intergenic | 35.0% | |
TGAAGGAGTCATATCCTAAT+TGG | - | chr5.3:6467316-6467335 | None:intergenic | 35.0% | |
TGAGTTGTCAAAGTCGAAAT+GGG | + | chr5.3:6467007-6467026 | MS.gene54613:CDS | 35.0% | |
TTTCATTAGCCAGAAAGCAA+TGG | - | chr5.3:6464135-6464154 | None:intergenic | 35.0% | |
! | AAGAAATTGTGCTGCTATTC+AGG | - | chr5.3:6465193-6465212 | None:intergenic | 35.0% |
! | AAGAAGTGAACTTGCTCAAA+CGG | + | chr5.3:6464866-6464885 | MS.gene54613:CDS | 35.0% |
! | CAGGTTTGTTCTGATTTCAT+TGG | + | chr5.3:6465055-6465074 | MS.gene54613:intron | 35.0% |
! | GATATCTGAGTTTTGCTTCT+AGG | + | chr5.3:6465236-6465255 | MS.gene54613:intron | 35.0% |
! | GCATTTGGAATTGAAAGTTG+TGG | + | chr5.3:6463527-6463546 | MS.gene54613:intron | 35.0% |
! | TCTGAGACAATGTAACTAAC+TGG | + | chr5.3:6463632-6463651 | MS.gene54613:intron | 35.0% |
! | TGCTTTGCGATTTGGATTAT+CGG | + | chr5.3:6464571-6464590 | MS.gene54613:intron | 35.0% |
! | TTAAGGGGAGTTGATTGAAT+TGG | + | chr5.3:6463662-6463681 | MS.gene54613:intron | 35.0% |
! | TTATGAAAGTGAAGCACCAA+TGG | + | chr5.3:6466023-6466042 | MS.gene54613:CDS | 35.0% |
!! | CTACTTTTACATCTCTGCAT+CGG | - | chr5.3:6467138-6467157 | None:intergenic | 35.0% |
!! | GAAAGCTTGCCTTTTAAGAA+CGG | - | chr5.3:6466187-6466206 | None:intergenic | 35.0% |
!! | TGGTGATTTGTTGCATTGAT+AGG | + | chr5.3:6463682-6463701 | MS.gene54613:intron | 35.0% |
!! | TGTTTAAGTGGTTTGTTGTG+CGG | + | chr5.3:6464522-6464541 | MS.gene54613:intron | 35.0% |
!!! | ACACATGTCCTCTTTTTTGA+AGG | - | chr5.3:6465895-6465914 | None:intergenic | 35.0% |
AACCGCAATTATGACAGCAT+CGG | - | chr5.3:6463785-6463804 | None:intergenic | 40.0% | |
AATGGAGCAAGACATGATTG+AGG | - | chr5.3:6464117-6464136 | None:intergenic | 40.0% | |
ACAGATGCTAGTGATCTAAC+AGG | + | chr5.3:6465036-6465055 | MS.gene54613:CDS | 40.0% | |
ACTTGCATCTGATTACAACC+AGG | + | chr5.3:6464921-6464940 | MS.gene54613:CDS | 40.0% | |
AGATCCTATGCGTGATTACA+TGG | - | chr5.3:6465482-6465501 | None:intergenic | 40.0% | |
AGCAGAAATCAGAACTTTCC+AGG | + | chr5.3:6467234-6467253 | MS.gene54613:CDS | 40.0% | |
AGGGTGAATCATGATTTCCA+AGG | - | chr5.3:6466450-6466469 | None:intergenic | 40.0% | |
AGTGCTCATTCGCTATTCTA+AGG | + | chr5.3:6465285-6465304 | MS.gene54613:intron | 40.0% | |
AGTTTAGCAGTATCAACCAC+AGG | - | chr5.3:6466703-6466722 | None:intergenic | 40.0% | |
ATCCGGCAAAGAGATATCAA+AGG | - | chr5.3:6466943-6466962 | None:intergenic | 40.0% | |
ATGGAGCAAGACATGATTGA+GGG | - | chr5.3:6464116-6464135 | None:intergenic | 40.0% | |
CAACTGCCAAGAATTCAACT+AGG | - | chr5.3:6466507-6466526 | None:intergenic | 40.0% | |
CAACTGCGAACGCAATATAA+CGG | - | chr5.3:6463835-6463854 | None:intergenic | 40.0% | |
CCAATACTATGCAATGCATG+TGG | + | chr5.3:6464721-6464740 | MS.gene54613:CDS | 40.0% | |
CCACATGCATTGCATAGTAT+TGG | - | chr5.3:6464724-6464743 | None:intergenic | 40.0% | |
CGATGCAGAGATGTAAAAGT+AGG | + | chr5.3:6467136-6467155 | MS.gene54613:intron | 40.0% | |
CTAGTTGAATTCTTGGCAGT+TGG | + | chr5.3:6466505-6466524 | MS.gene54613:intron | 40.0% | |
CTTGCATCTGATTACAACCA+GGG | + | chr5.3:6464922-6464941 | MS.gene54613:CDS | 40.0% | |
GAGCACCAAAGTATGAAGTT+GGG | - | chr5.3:6467762-6467781 | None:intergenic | 40.0% | |
GAGTAGAATTCTAACCCATC+AGG | - | chr5.3:6466727-6466746 | None:intergenic | 40.0% | |
GATACTGCTAAACTTCCTGA+TGG | + | chr5.3:6466709-6466728 | MS.gene54613:CDS | 40.0% | |
GATCCTATGCGTGATTACAT+GGG | - | chr5.3:6465481-6465500 | None:intergenic | 40.0% | |
GGATATGACTCCTTCAAAGT+TGG | + | chr5.3:6467320-6467339 | MS.gene54613:intron | 40.0% | |
GGTGGAACACTATCATAACA+AGG | + | chr5.3:6467028-6467047 | MS.gene54613:CDS | 40.0% | |
TGAGCACCAAAGTATGAAGT+TGG | - | chr5.3:6467763-6467782 | None:intergenic | 40.0% | |
TTACAACCAGGGATTCCAAA+AGG | + | chr5.3:6464933-6464952 | MS.gene54613:CDS | 40.0% | |
TTACACACCTTTACATGCTC+GGG | + | chr5.3:6464777-6464796 | MS.gene54613:CDS | 40.0% | |
TTATATTGCGTTCGCAGTTG+CGG | + | chr5.3:6463835-6463854 | MS.gene54613:intron | 40.0% | |
TTTCAGCAGCTTCTTGCAAA+AGG | + | chr5.3:6466915-6466934 | MS.gene54613:CDS | 40.0% | |
! | CTGGAAAGAGTACAAATCCT+TGG | + | chr5.3:6466430-6466449 | MS.gene54613:CDS | 40.0% |
! | GCAATCAATCTTTTCACCAC+AGG | + | chr5.3:6464381-6464400 | MS.gene54613:intron | 40.0% |
! | GGCAAAGGAAATAGGCTTTT+TGG | - | chr5.3:6467622-6467641 | None:intergenic | 40.0% |
! | TGACAATTGAGCATTGCAAC+AGG | + | chr5.3:6464664-6464683 | MS.gene54613:intron | 40.0% |
! | TTGATGATCAAAGGGCTTCA+AGG | + | chr5.3:6464815-6464834 | MS.gene54613:CDS | 40.0% |
!! | CAGTCTTCAGGTTTTACATC+CGG | - | chr5.3:6466960-6466979 | None:intergenic | 40.0% |
!! | GACATGGAAGTGTTCTCATT+AGG | + | chr5.3:6466061-6466080 | MS.gene54613:CDS | 40.0% |
!! | TTGCATAGTATTGGCTTCTC+TGG | - | chr5.3:6464715-6464734 | None:intergenic | 40.0% |
!! | TTGTTGTTTGTGCAGCCTTA+AGG | + | chr5.3:6466851-6466870 | MS.gene54613:intron | 40.0% |
!!! | CTCTTTTTTGAAGGCACTGT+GGG | - | chr5.3:6465886-6465905 | None:intergenic | 40.0% |
ACCAAATTGTGCGCAGCTTT+CGG | - | chr5.3:6465013-6465032 | None:intergenic | 45.0% | |
AGAAGAGACAAAGTGCGATG+CGG | + | chr5.3:6466364-6466383 | MS.gene54613:intron | 45.0% | |
AGCCGATGCTGTCATAATTG+CGG | + | chr5.3:6463780-6463799 | MS.gene54613:intron | 45.0% | |
AGCTACCGAACATGACCTTA+AGG | - | chr5.3:6466869-6466888 | None:intergenic | 45.0% | |
ATTCTGGCGCCGTTCTTAAA+AGG | + | chr5.3:6466175-6466194 | MS.gene54613:intron | 45.0% | |
CACTTGTAACTCCACAGTGA+TGG | - | chr5.3:6463333-6463352 | None:intergenic | 45.0% | |
CATCAGGAGGCAAAGGAAAT+AGG | - | chr5.3:6467630-6467649 | None:intergenic | 45.0% | |
CCACAGTGCCTTCAAAAAAG+AGG | + | chr5.3:6465884-6465903 | MS.gene54613:CDS | 45.0% | |
CGCCTTTGATATCTCTTTGC+CGG | + | chr5.3:6466938-6466957 | MS.gene54613:CDS | 45.0% | |
CTCAATGTGTCAGAGGATCT+TGG | + | chr5.3:6464073-6464092 | MS.gene54613:intron | 45.0% | |
CTGCACCCAACTTCATACTT+TGG | + | chr5.3:6467754-6467773 | MS.gene54613:CDS | 45.0% | |
GCTGAAAAATCGGATGTTCC+AGG | + | chr5.3:6467159-6467178 | MS.gene54613:CDS | 45.0% | |
GTGAGCTTCTCAACAGAAGA+TGG | - | chr5.3:6465934-6465953 | None:intergenic | 45.0% | |
GTTCGGTAGCTCTCAATTCA+AGG | + | chr5.3:6466878-6466897 | MS.gene54613:CDS | 45.0% | |
GTTGTCAAAGTCGAAATGGG+TGG | + | chr5.3:6467010-6467029 | MS.gene54613:CDS | 45.0% | |
TATGCAATGCATGTGGTTCG+CGG | + | chr5.3:6464728-6464747 | MS.gene54613:CDS | 45.0% | |
TGCAGCCTTAAGGTCATGTT+CGG | + | chr5.3:6466861-6466880 | MS.gene54613:intron | 45.0% | |
TGTCTTGCTCCATTGCTTTC+TGG | + | chr5.3:6464123-6464142 | MS.gene54613:intron | 45.0% | |
TTCAAAGTCTCGCAGTCTTC+AGG | - | chr5.3:6466972-6466991 | None:intergenic | 45.0% | |
TTTCAGTGACAAGTCTCAGC+TGG | + | chr5.3:6466411-6466430 | MS.gene54613:intron | 45.0% | |
! | ACATCTCTGCATCGGTAGAA+GGG | - | chr5.3:6467130-6467149 | None:intergenic | 45.0% |
! | TACATCTCTGCATCGGTAGA+AGG | - | chr5.3:6467131-6467150 | None:intergenic | 45.0% |
! | TTGCGGTTGTGATGATGCTA+TGG | + | chr5.3:6463797-6463816 | MS.gene54613:intron | 45.0% |
!! | CATAGTATTGGCTTCTCTGG+TGG | - | chr5.3:6464712-6464731 | None:intergenic | 45.0% |
!!! | CAAAAGCCTTTTGGAATCCC+TGG | - | chr5.3:6464942-6464961 | None:intergenic | 45.0% |
!!! | CCTCTTTTTTGAAGGCACTG+TGG | - | chr5.3:6465887-6465906 | None:intergenic | 45.0% |
!!! | TTTAATTTTAATTTATTGTT+TGG | + | chr5.3:6465819-6465838 | MS.gene54613:intron | 5.0% |
AAGTGTGAGCTTGCATCAGG+AGG | - | chr5.3:6467643-6467662 | None:intergenic | 50.0% | |
ACGCCCATGTAATCACGCAT+AGG | + | chr5.3:6465475-6465494 | MS.gene54613:intron | 50.0% | |
AGCAAGTGTGAGCTTGCATC+AGG | - | chr5.3:6467646-6467665 | None:intergenic | 50.0% | |
CCAATGGTCTCTGTCGAGAT+AGG | + | chr5.3:6466039-6466058 | MS.gene54613:CDS | 50.0% | |
CCTATCTCGACAGAGACCAT+TGG | - | chr5.3:6466042-6466061 | None:intergenic | 50.0% | |
GAAAGCTGCGCACAATTTGG+TGG | + | chr5.3:6465012-6465031 | MS.gene54613:CDS | 50.0% | |
GATGCTATACCAGCAGATCC+TGG | - | chr5.3:6467180-6467199 | None:intergenic | 50.0% | |
GTAACTCCACAGTGATGGCA+AGG | - | chr5.3:6463328-6463347 | None:intergenic | 50.0% | |
GTCTCTGTCGAGATAGGACA+TGG | + | chr5.3:6466045-6466064 | MS.gene54613:CDS | 50.0% | |
GTTTCAGCCCGAGCATGTAA+AGG | - | chr5.3:6464787-6464806 | None:intergenic | 50.0% | |
TCCGAAAGCTGCGCACAATT+TGG | + | chr5.3:6465009-6465028 | MS.gene54613:CDS | 50.0% | |
TCGTCGCGAGCTACATAACT+AGG | - | chr5.3:6466090-6466109 | None:intergenic | 50.0% | |
TGCGTGATTACATGGGCGTT+TGG | - | chr5.3:6465474-6465493 | None:intergenic | 50.0% | |
TGCTGAGCTACTACTAGTGC+TGG | - | chr5.3:6467788-6467807 | None:intergenic | 50.0% | |
TTGCAACAGGCACACCACTT+TGG | + | chr5.3:6464677-6464696 | MS.gene54613:intron | 50.0% | |
! | TTTAGGACCTGCTCAGTCAG+TGG | + | chr5.3:6465846-6465865 | MS.gene54613:intron | 50.0% |
!!! | TTTTGAAGGCACTGTGGGAG+TGG | - | chr5.3:6465881-6465900 | None:intergenic | 50.0% |
ACCTGCTCAGTCAGTGGTCT+GGG | + | chr5.3:6465852-6465871 | MS.gene54613:CDS | 55.0% | |
CAAGGACCTTGCCATCACTG+TGG | + | chr5.3:6463319-6463338 | MS.gene54613:CDS | 55.0% | |
GAGCTTGCATCAGGAGGCAA+AGG | - | chr5.3:6467637-6467656 | None:intergenic | 55.0% | |
GCACACCACTTTGGCGCAAT+GGG | + | chr5.3:6464686-6464705 | MS.gene54613:CDS | 55.0% | |
TCGGATGTTCCAGGATCTGC+TGG | + | chr5.3:6467168-6467187 | MS.gene54613:CDS | 55.0% | |
AGCTCGCGACGAAGAGTCTG+AGG | + | chr5.3:6466098-6466117 | MS.gene54613:CDS | 60.0% | |
ATGCATGTGGTTCGCGGTGG+AGG | + | chr5.3:6464734-6464753 | MS.gene54613:CDS | 60.0% | |
GACCTGCTCAGTCAGTGGTC+TGG | + | chr5.3:6465851-6465870 | MS.gene54613:CDS | 60.0% | |
GCAATGCATGTGGTTCGCGG+TGG | + | chr5.3:6464731-6464750 | MS.gene54613:CDS | 60.0% | |
GGCACACCACTTTGGCGCAA+TGG | + | chr5.3:6464685-6464704 | MS.gene54613:intron | 60.0% | |
GGGTGCAGAAGTTCTGCCTG+CGG | - | chr5.3:6467742-6467761 | None:intergenic | 60.0% | |
GGTTCGCGGTGGAGGACAAA+GGG | + | chr5.3:6464742-6464761 | MS.gene54613:CDS | 60.0% | |
TCGCAGTTGCGGTTGTGGAC+CGG | + | chr5.3:6463846-6463865 | MS.gene54613:intron | 60.0% | |
TGCGTTCGCAGTTGCGGTTG+TGG | + | chr5.3:6463841-6463860 | MS.gene54613:intron | 60.0% | |
TGGTTCGCGGTGGAGGACAA+AGG | + | chr5.3:6464741-6464760 | MS.gene54613:CDS | 60.0% | |
! | TCCCAGACCACTGACTGAGC+AGG | - | chr5.3:6465856-6465875 | None:intergenic | 60.0% |
GGTGGCCCATTGCGCCAAAG+TGG | - | chr5.3:6464694-6464713 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 6463310 | 6467831 | 6463310 | ID=MS.gene54613 |
chr5.3 | mRNA | 6463310 | 6467831 | 6463310 | ID=MS.gene54613.t1;Parent=MS.gene54613 |
chr5.3 | exon | 6463310 | 6463349 | 6463310 | ID=MS.gene54613.t1.exon1;Parent=MS.gene54613.t1 |
chr5.3 | CDS | 6463310 | 6463349 | 6463310 | ID=cds.MS.gene54613.t1;Parent=MS.gene54613.t1 |
chr5.3 | exon | 6464686 | 6465057 | 6464686 | ID=MS.gene54613.t1.exon2;Parent=MS.gene54613.t1 |
chr5.3 | CDS | 6464686 | 6465057 | 6464686 | ID=cds.MS.gene54613.t1;Parent=MS.gene54613.t1 |
chr5.3 | exon | 6465851 | 6466185 | 6465851 | ID=MS.gene54613.t1.exon3;Parent=MS.gene54613.t1 |
chr5.3 | CDS | 6465851 | 6466185 | 6465851 | ID=cds.MS.gene54613.t1;Parent=MS.gene54613.t1 |
chr5.3 | exon | 6466424 | 6466489 | 6466424 | ID=MS.gene54613.t1.exon4;Parent=MS.gene54613.t1 |
chr5.3 | CDS | 6466424 | 6466489 | 6466424 | ID=cds.MS.gene54613.t1;Parent=MS.gene54613.t1 |
chr5.3 | exon | 6466628 | 6466731 | 6466628 | ID=MS.gene54613.t1.exon5;Parent=MS.gene54613.t1 |
chr5.3 | CDS | 6466628 | 6466731 | 6466628 | ID=cds.MS.gene54613.t1;Parent=MS.gene54613.t1 |
chr5.3 | exon | 6466866 | 6467049 | 6466866 | ID=MS.gene54613.t1.exon6;Parent=MS.gene54613.t1 |
chr5.3 | CDS | 6466866 | 6467049 | 6466866 | ID=cds.MS.gene54613.t1;Parent=MS.gene54613.t1 |
chr5.3 | exon | 6467144 | 6467255 | 6467144 | ID=MS.gene54613.t1.exon7;Parent=MS.gene54613.t1 |
chr5.3 | CDS | 6467144 | 6467255 | 6467144 | ID=cds.MS.gene54613.t1;Parent=MS.gene54613.t1 |
chr5.3 | exon | 6467563 | 6467831 | 6467563 | ID=MS.gene54613.t1.exon8;Parent=MS.gene54613.t1 |
chr5.3 | CDS | 6467563 | 6467831 | 6467563 | ID=cds.MS.gene54613.t1;Parent=MS.gene54613.t1 |
Gene Sequence |
Protein sequence |