AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54645

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54645.t1 MTR_6g007647 99.303 287 2 0 1 287 1 287 0.0 587
MS.gene54645.t1 MTR_6g007647 99.209 253 2 0 35 287 1 253 0.0 514
MS.gene54645.t1 MTR_5g038280 45.022 231 83 7 39 231 51 275 2.79e-45 155
MS.gene54645.t1 MTR_4g107650 38.869 283 113 9 1 228 1 278 1.38e-44 154
MS.gene54645.t1 MTR_8g469430 70.297 101 30 0 63 163 85 185 4.96e-42 146
MS.gene54645.t1 MTR_8g468210 52.482 141 55 3 22 162 44 172 1.91e-39 139
MS.gene54645.t1 MTR_8g089895 52.113 142 55 1 32 173 32 160 1.29e-38 138
MS.gene54645.t1 MTR_6g011610 62.162 111 41 1 52 162 82 191 2.81e-38 136
MS.gene54645.t1 MTR_6g011610 62.162 111 41 1 52 162 63 172 3.81e-38 135
MS.gene54645.t1 MTR_5g039000 57.031 128 47 1 43 162 45 172 6.13e-38 135
MS.gene54645.t1 MTR_3g080100 61.404 114 42 1 52 163 3 116 1.03e-36 130
MS.gene54645.t1 MTR_3g086790 62.264 106 40 0 66 171 59 164 1.30e-36 132
MS.gene54645.t1 MTR_3g080100 59.664 119 46 1 47 163 37 155 2.32e-36 130
MS.gene54645.t1 MTR_7g103340 58.824 102 35 1 66 167 62 156 6.28e-32 118
MS.gene54645.t1 MTR_7g010020 56.250 112 45 2 52 162 67 175 4.81e-31 117
MS.gene54645.t1 MTR_1g061660 55.882 102 38 1 66 167 58 152 1.04e-29 112
MS.gene54645.t1 MTR_8g026960 54.255 94 43 0 71 164 38 131 3.95e-29 111
MS.gene54645.t1 MTR_3g092150 57.143 91 39 0 69 159 40 130 1.51e-28 110
MS.gene54645.t1 MTR_5g019650 47.748 111 56 1 67 175 53 163 1.03e-22 94.0
MS.gene54645.t1 MTR_5g019680 48.182 110 48 2 67 174 53 155 3.99e-22 92.0
MS.gene54645.t1 MTR_1g017090 50.000 104 45 1 64 167 127 223 6.24e-21 90.5
MS.gene54645.t1 MTR_4g100550 48.148 108 47 2 52 159 107 205 6.29e-21 90.1
MS.gene54645.t1 MTR_4g084750 43.089 123 58 3 64 186 62 172 1.44e-19 84.7
MS.gene54645.t1 MTR_5g013010 40.260 154 88 3 54 205 125 276 1.70e-19 86.7
MS.gene54645.t1 MTR_4g097600 50.538 93 39 1 67 159 127 212 3.42e-19 85.5
MS.gene54645.t1 MTR_8g006705 50.538 93 39 1 67 159 146 231 4.33e-19 85.5
MS.gene54645.t1 MTR_7g093430 42.500 120 69 0 61 180 154 273 6.34e-19 85.1
MS.gene54645.t1 MTR_5g014890 49.462 93 40 1 67 159 123 208 2.14e-18 83.2
MS.gene54645.t1 MTR_2g061030 42.105 114 66 0 67 180 200 313 4.10e-18 83.2
MS.gene54645.t1 MTR_3g103590 42.593 108 61 1 67 174 145 251 8.63e-18 82.0
MS.gene54645.t1 MTR_1g054285 40.833 120 71 0 61 180 148 267 1.07e-17 81.6
MS.gene54645.t1 MTR_4g126900 47.778 90 40 1 70 159 91 173 2.35e-17 79.3
MS.gene54645.t1 MTR_5g013010 55.385 65 27 1 54 118 125 187 8.55e-14 69.3
MS.gene54645.t1 MTR_2g038625 43.011 93 46 1 67 159 82 167 2.44e-13 68.2
MS.gene54645.t1 MTR_2g038580 43.011 93 46 1 67 159 82 167 2.44e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54645.t1 AT3G01470 57.143 287 100 8 1 281 1 270 2.20e-97 287
MS.gene54645.t1 AT5G65310 60.909 110 43 0 64 173 51 160 2.20e-38 137
MS.gene54645.t1 AT5G65310 60.909 110 43 0 64 173 69 178 2.87e-38 137
MS.gene54645.t1 AT2G22430 68.367 98 31 0 66 163 61 158 3.69e-38 137
MS.gene54645.t1 AT4G40060 49.315 146 67 1 53 191 45 190 5.23e-38 136
MS.gene54645.t1 AT1G69780 50.355 141 62 2 56 188 72 212 7.57e-38 135
MS.gene54645.t1 AT5G15150 70.213 94 28 0 66 159 114 207 1.06e-37 135
MS.gene54645.t1 AT3G01220 65.979 97 33 0 66 162 86 182 1.58e-35 129
MS.gene54645.t1 AT1G27045 62.000 100 38 0 67 166 25 124 6.26e-33 119
MS.gene54645.t1 AT1G27045 62.000 100 38 0 67 166 25 124 6.26e-33 119
MS.gene54645.t1 AT1G27045 62.000 100 38 0 67 166 17 116 6.98e-33 119
MS.gene54645.t1 AT1G27045 62.000 100 38 0 67 166 68 167 8.04e-33 120
MS.gene54645.t1 AT1G26960 47.297 148 69 3 29 173 36 177 1.43e-32 120
MS.gene54645.t1 AT2G46680 51.961 102 49 0 68 169 33 134 6.91e-31 116
MS.gene54645.t1 AT1G27045 62.766 94 35 0 67 160 68 161 8.52e-31 116
MS.gene54645.t1 AT3G61890 53.684 95 44 0 70 164 33 127 2.02e-30 114
MS.gene54645.t1 AT2G46680 55.556 90 40 0 68 157 33 122 2.97e-29 112
MS.gene54645.t1 AT4G36740 56.701 97 35 1 67 163 55 144 9.25e-28 107
MS.gene54645.t1 AT4G36740 56.701 97 35 1 67 163 56 145 9.57e-28 107
MS.gene54645.t1 AT5G03790 55.914 93 34 1 67 159 77 162 5.35e-26 102
MS.gene54645.t1 AT5G03790 53.465 101 40 1 67 167 77 170 5.99e-26 102
MS.gene54645.t1 AT2G18550 54.639 97 37 1 67 163 61 150 7.05e-26 102
MS.gene54645.t1 AT5G66700 49.524 105 46 1 67 164 71 175 2.46e-24 98.6
MS.gene54645.t1 AT2G36610 45.902 122 43 3 66 179 70 176 3.28e-24 97.1
MS.gene54645.t1 AT5G53980 45.455 99 54 0 58 156 2 100 3.11e-20 85.5
MS.gene54645.t1 AT4G17460 47.115 104 48 1 56 159 124 220 5.06e-19 85.1
MS.gene54645.t1 AT2G22800 38.710 124 73 1 58 178 101 224 5.61e-19 84.7
MS.gene54645.t1 AT5G06710 42.500 120 69 0 61 180 184 303 9.39e-19 85.1
MS.gene54645.t1 AT5G47370 44.348 115 52 2 50 159 108 215 2.23e-18 83.6
MS.gene54645.t1 AT2G01430 47.115 104 45 2 56 156 125 221 2.36e-18 83.2
MS.gene54645.t1 AT4G37790 44.231 104 51 1 56 159 115 211 2.27e-17 80.5
MS.gene54645.t1 AT3G60390 47.917 96 43 1 64 159 159 247 4.05e-17 80.5
MS.gene54645.t1 AT2G44910 48.387 93 41 1 67 159 163 248 4.21e-17 80.5
MS.gene54645.t1 AT4G16780 46.237 93 43 1 67 159 129 214 4.78e-17 79.7
MS.gene54645.t1 AT2G01430 52.239 67 29 1 56 119 125 191 1.36e-14 71.6
MS.gene54645.t1 AT1G70920 46.237 93 43 1 67 159 69 154 3.60e-14 70.1
MS.gene54645.t1 AT1G70920 46.591 88 47 0 67 154 39 126 3.98e-14 69.3
MS.gene54645.t1 AT5G06710 56.897 58 25 0 61 118 184 241 3.77e-13 68.6
MS.gene54645.t1 AT1G73360 34.653 101 50 2 66 164 32 118 5.59e-11 63.5

Find 72 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTGAAGCTTCTCATTTA+AGG 0.097700 6.1:-3175240 None:intergenic
AACATGAACATGCTGTTTCT+TGG 0.235472 6.1:+3173011 MS.gene54645:CDS
ATCCTAGTTTCTTGGCCAAC+TGG 0.259750 6.1:-3174406 None:intergenic
TCTGATTGAACTCTTTCAAT+AGG 0.332216 6.1:-3175482 None:intergenic
TTTCTTGGAAATGCTGATCT+TGG 0.335848 6.1:+3173026 MS.gene54645:CDS
GTGGATGACCACATGAGTTC+TGG 0.344344 6.1:+3175350 MS.gene54645:CDS
TCAGTGCCTCTCCCTCTTCA+TGG 0.347311 6.1:-3175577 None:intergenic
AGGTTGCAATCCTAGTTTCT+TGG 0.355925 6.1:-3174414 None:intergenic
AACATATGATTCCATTACTA+AGG 0.392206 6.1:+3174541 MS.gene54645:CDS
GGAATCATATGTTGAAAGTA+GGG 0.419448 6.1:-3174531 None:intergenic
TTCAGAACCGTAGGGCTAGA+TGG 0.424104 6.1:+3174456 MS.gene54645:CDS
GTGAGGCGGCGCTTCTTCTC+CGG 0.438471 6.1:-3173765 None:intergenic
GAAGATGATGGGAGTGATGA+TGG 0.439088 6.1:+3175506 MS.gene54645:CDS
TGGAATCATATGTTGAAAGT+AGG 0.440148 6.1:-3174532 None:intergenic
TGTTGAAAGTAGGGAATCAT+AGG 0.441815 6.1:-3174522 None:intergenic
TTTCTCATTCTCCTTAGTAA+TGG 0.443693 6.1:-3174552 None:intergenic
AACCTAGGCAGGTGGCTGTA+TGG 0.452751 6.1:+3174432 MS.gene54645:CDS
AAGAGGGAGAGGCACTGAAT+TGG 0.468712 6.1:+3175582 MS.gene54645:CDS
TCCTAGTTTCTTGGCCAACT+GGG 0.472188 6.1:-3174405 None:intergenic
AGGGAGAGGCACTGAATTGG+TGG 0.476724 6.1:+3175585 MS.gene54645:CDS
TCCTCATCATACAGTTCATC+CGG 0.477560 6.1:-3173723 None:intergenic
TGAGCTATGTCCACTGGAAG+TGG 0.478436 6.1:-3175311 None:intergenic
GTTCAATCAGAGGAAGATGA+TGG 0.478448 6.1:+3175494 MS.gene54645:CDS
ACTAGGATTGCAACCTAGGC+AGG 0.478866 6.1:+3174421 MS.gene54645:CDS
AGAAACTAGGATTGCAACCT+AGG 0.487565 6.1:+3174417 MS.gene54645:CDS
CTGTATGGTTTCAGAACCGT+AGG 0.504508 6.1:+3174447 MS.gene54645:CDS
CACATGAGTTCTGGAAGCGT+TGG 0.505249 6.1:+3175359 MS.gene54645:CDS
TTTGATTCTTCTGCTTGTCG+TGG 0.507243 6.1:+3172984 MS.gene54645:CDS
ACCCAGTTGGCCAAGAAACT+AGG 0.526542 6.1:+3174404 MS.gene54645:CDS
AACAATGACACCAACGACAC+GGG 0.527406 6.1:-3175408 None:intergenic
TTGATTCTTCTGCTTGTCGT+GGG 0.527464 6.1:+3172985 MS.gene54645:CDS
TGATGAATAGGTACATATGT+TGG 0.530364 6.1:+3174337 MS.gene54645:intron
CATCCAGCATAGTTGTCAGC+TGG 0.530440 6.1:-3175452 None:intergenic
TTGTCTTCCATCTAGCCCTA+CGG 0.531725 6.1:-3174463 None:intergenic
TTTCCAGCTGACAACTATGC+TGG 0.536407 6.1:+3175449 MS.gene54645:CDS
GCGCCGCCTCACTTCCGAGC+AGG 0.539627 6.1:+3173776 MS.gene54645:CDS
AAGATGATGGGAGTGATGAT+GGG 0.542417 6.1:+3175507 MS.gene54645:CDS
GGAAGGTCAATGATGAGCAT+GGG 0.542750 6.1:+3173666 MS.gene54645:intron
TTCAATCAGAGGAAGATGAT+GGG 0.547251 6.1:+3175495 MS.gene54645:CDS
AAAATCTGAGCTATGTCCAC+TGG 0.550742 6.1:-3175317 None:intergenic
AGGAAGGTCAATGATGAGCA+TGG 0.567797 6.1:+3173665 MS.gene54645:intron
GAGACCTTTCTTTAGCTCAC+CGG 0.569954 6.1:+3173704 MS.gene54645:CDS
CAACAATGACACCAACGACA+CGG 0.575613 6.1:-3175409 None:intergenic
AACCATACAGCCACCTGCCT+AGG 0.579439 6.1:-3174434 None:intergenic
TATGTTGGAGAAGAGCTTTG+AGG 0.579800 6.1:+3174352 MS.gene54645:CDS
AGGCAAGAAACCAACCTGCT+CGG 0.580249 6.1:-3173790 None:intergenic
GGGAGAGGCACTGAATTGGT+GGG 0.586237 6.1:+3175586 MS.gene54645:CDS
TCATCCGGTGAGCTAAAGAA+AGG 0.588529 6.1:-3173708 None:intergenic
ACATAACCATGAAGAGGGAG+AGG 0.603541 6.1:+3175571 MS.gene54645:CDS
AACCAACCTGCTCGGAAGTG+AGG 0.608175 6.1:-3173782 None:intergenic
GAAAGCTGATCCACTTCCAG+TGG 0.611490 6.1:+3175301 MS.gene54645:CDS
AGAACAAACTTGAGCCAGAG+AGG 0.615094 6.1:+3174378 MS.gene54645:CDS
CAACCTGCTCGGAAGTGAGG+CGG 0.622855 6.1:-3173779 None:intergenic
GAAGGTCAATGATGAGCATG+GGG 0.623217 6.1:+3173667 MS.gene54645:CDS
ACAATGACACCAACGACACG+GGG 0.624556 6.1:-3175407 None:intergenic
GCCAGAGAGGAAAACCCAGT+TGG 0.627216 6.1:+3174391 MS.gene54645:CDS
TGAGCAACATAACCATGAAG+AGG 0.628182 6.1:+3175565 MS.gene54645:CDS
GAATGAGAAACTCAAATCTG+AGG 0.629755 6.1:+3174565 MS.gene54645:CDS
GGAGAGGCACTGAATTGGTG+GGG 0.631899 6.1:+3175587 MS.gene54645:CDS
AAGCGTTGGAAGTGCAGTGG+TGG 0.633588 6.1:+3175373 MS.gene54645:CDS
CAACGCTTCCAGAACTCATG+TGG 0.634732 6.1:-3175358 None:intergenic
GAGCAACATAACCATGAAGA+GGG 0.640168 6.1:+3175566 MS.gene54645:CDS
ACCGGATGAACTGTATGATG+AGG 0.641946 6.1:+3173722 MS.gene54645:CDS
TGACAACTATGCTGGATGTG+TGG 0.645273 6.1:+3175457 MS.gene54645:CDS
GTACTACGAAGAACAGTCAC+CGG 0.657008 6.1:+3173746 MS.gene54645:CDS
AGGATTGCAACCTAGGCAGG+TGG 0.665303 6.1:+3174424 MS.gene54645:CDS
TGGAAGCGTTGGAAGTGCAG+TGG 0.670661 6.1:+3175370 MS.gene54645:CDS
ATGATGGGAGTGATGATGGG+AGG 0.679048 6.1:+3175510 MS.gene54645:CDS
TATTGAAAGAGTTCAATCAG+AGG 0.686434 6.1:+3175484 MS.gene54645:CDS
TGTATGGTTTCAGAACCGTA+GGG 0.689319 6.1:+3174448 MS.gene54645:CDS
CAATGACACCAACGACACGG+GGG 0.756439 6.1:-3175406 None:intergenic
AAGGTCAATGATGAGCATGG+GGG 0.757009 6.1:+3173668 MS.gene54645:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATCAAATGTTTTTAA+TGG + chr6.1:3174643-3174662 MS.gene54645:intron 10.0%
!! TACAAACACTAATAAATAAA+TGG - chr6.1:3174033-3174052 None:intergenic 15.0%
!! AATATAGTGTAGAATCTTAT+GGG - chr6.1:3174971-3174990 None:intergenic 20.0%
!! ATATATGCAAATTGAGAATT+TGG + chr6.1:3174757-3174776 MS.gene54645:intron 20.0%
!! ATTAGTGTTATGCATTAAAA+AGG + chr6.1:3174794-3174813 MS.gene54645:intron 20.0%
!! TAATATAGTGTAGAATCTTA+TGG - chr6.1:3174972-3174991 None:intergenic 20.0%
!! TACAATCCAAAAAAACAAAA+TGG - chr6.1:3173093-3173112 None:intergenic 20.0%
!!! AATCAAATGTTTTTAATGGT+CGG + chr6.1:3174647-3174666 MS.gene54645:intron 20.0%
!!! ACTAATGAGTTTTTTAAAAG+AGG + chr6.1:3175127-3175146 MS.gene54645:intron 20.0%
!!! CTAATGAGTTTTTTAAAAGA+GGG + chr6.1:3175128-3175147 MS.gene54645:intron 20.0%
!!! CTTAATCTATTGAGTTTTTA+TGG + chr6.1:3173065-3173084 MS.gene54645:intron 20.0%
!!! GATTTGATTTGATTTGATTT+GGG + chr6.1:3173331-3173350 MS.gene54645:intron 20.0%
!!! TAATGAGTTTTTTAAAAGAG+GGG + chr6.1:3175129-3175148 MS.gene54645:intron 20.0%
!!! TGATTTGATTTGATTTGATT+TGG + chr6.1:3173330-3173349 MS.gene54645:intron 20.0%
!!! TGTTTATTAGTTTTAGTGAT+TGG + chr6.1:3174072-3174091 MS.gene54645:intron 20.0%
!!! TTGATTTGAGTTTTTGTTAA+AGG + chr6.1:3173429-3173448 MS.gene54645:intron 20.0%
!!! TTTTTTGGATTGTAAATTGT+TGG + chr6.1:3173099-3173118 MS.gene54645:intron 20.0%
! AAACATATCCAAATTCATTC+AGG - chr6.1:3173817-3173836 None:intergenic 25.0%
! AAATTGTCTGTCAAAAGTTA+TGG + chr6.1:3174832-3174851 MS.gene54645:intron 25.0%
! AACATATGATTCCATTACTA+AGG + chr6.1:3174541-3174560 MS.gene54645:CDS 25.0%
! AATTGTCTGTCAAAAGTTAT+GGG + chr6.1:3174833-3174852 MS.gene54645:intron 25.0%
! ACCATAAAATAGTTAACAAG+TGG + chr6.1:3175164-3175183 MS.gene54645:intron 25.0%
! TGTTAAGAATGGTATTTGTT+TGG + chr6.1:3173147-3173166 MS.gene54645:intron 25.0%
! TTTGTGATTAACTAACTTTG+TGG + chr6.1:3174312-3174331 MS.gene54645:intron 25.0%
!!! AAATTGTTGGTTTTGTTGTT+TGG + chr6.1:3173112-3173131 MS.gene54645:intron 25.0%
!!! ATGGTACCATTTTGTTTTTT+TGG + chr6.1:3173084-3173103 MS.gene54645:intron 25.0%
!!! GAATTTTTTTGAATGAAAGC+AGG + chr6.1:3173645-3173664 MS.gene54645:intron 25.0%
!!! GAGATTTTCTTTTTTTGGTT+AGG + chr6.1:3173294-3173313 MS.gene54645:intron 25.0%
!!! TCCACTTGTTAACTATTTTA+TGG - chr6.1:3175168-3175187 None:intergenic 25.0%
!!! TTAGTTTTAGTGATTGGTTA+AGG + chr6.1:3174078-3174097 MS.gene54645:intron 25.0%
!!! TTGATTTTATGAGTTGAGTT+AGG + chr6.1:3173252-3173271 MS.gene54645:intron 25.0%
!!! TTGCTTTGTTTTGTTAAGAA+TGG + chr6.1:3173136-3173155 MS.gene54645:intron 25.0%
!!! TTTGATTTGATTTGGGTTTT+TGG + chr6.1:3173348-3173367 MS.gene54645:intron 25.0%
AAAACGAGTGTAAATTGATG+AGG + chr6.1:3173609-3173628 MS.gene54645:intron 30.0%
AAATTTCCACTTACCAAAGA+AGG + chr6.1:3174917-3174936 MS.gene54645:intron 30.0%
AACTTGAAGCTTCTCATTTA+AGG - chr6.1:3175243-3175262 None:intergenic 30.0%
AACTTTGTGGTTTGATGAAT+AGG + chr6.1:3174325-3174344 MS.gene54645:intron 30.0%
AAGAATGGTATTTGTTTGGA+TGG + chr6.1:3173151-3173170 MS.gene54645:intron 30.0%
ACTTGATCGTGTATCAAATT+TGG + chr6.1:3173382-3173401 MS.gene54645:intron 30.0%
CTTGATCGTGTATCAAATTT+GGG + chr6.1:3173383-3173402 MS.gene54645:intron 30.0%
GCAATATGTGTGAAAAATGA+GGG + chr6.1:3173954-3173973 MS.gene54645:intron 30.0%
GGAATCATATGTTGAAAGTA+GGG - chr6.1:3174534-3174553 None:intergenic 30.0%
TACTGAAAATATTTAGTCCC+CGG + chr6.1:3174229-3174248 MS.gene54645:intron 30.0%
TATTGAAAGAGTTCAATCAG+AGG + chr6.1:3175484-3175503 MS.gene54645:CDS 30.0%
TCAGTATAAGAGAAAAAGAC+TGG - chr6.1:3174215-3174234 None:intergenic 30.0%
TCTGATTGAACTCTTTCAAT+AGG - chr6.1:3175485-3175504 None:intergenic 30.0%
TCTGTATAGGATAGAATTAG+TGG + chr6.1:3174864-3174883 MS.gene54645:intron 30.0%
TCTTCAATCTAGTTGATCTA+CGG - chr6.1:3174268-3174287 None:intergenic 30.0%
TGATGAATAGGTACATATGT+TGG + chr6.1:3174337-3174356 MS.gene54645:intron 30.0%
TGCAATATGTGTGAAAAATG+AGG + chr6.1:3173953-3173972 MS.gene54645:intron 30.0%
TGGAATCATATGTTGAAAGT+AGG - chr6.1:3174535-3174554 None:intergenic 30.0%
TTTCTCATTCTCCTTAGTAA+TGG - chr6.1:3174555-3174574 None:intergenic 30.0%
! TGGAAATTTGCTTCTTATGA+TGG - chr6.1:3174906-3174925 None:intergenic 30.0%
! TTCGCATAGTTACTTTGAAA+AGG - chr6.1:3175053-3175072 None:intergenic 30.0%
! TTTTGTTAAAGGAAGCAACT+TGG + chr6.1:3173440-3173459 MS.gene54645:intron 30.0%
!! AAATGTTTTTAATGGTCGGA+CGG + chr6.1:3174651-3174670 MS.gene54645:intron 30.0%
!! TTTTAAAAGAGGGGTATGTA+AGG + chr6.1:3175138-3175157 MS.gene54645:intron 30.0%
!!! TTTTTTGAATGAAAGCAGGA+AGG + chr6.1:3173649-3173668 MS.gene54645:intron 30.0%
ACTTACCAAAGAAGGTGATT+AGG + chr6.1:3174925-3174944 MS.gene54645:intron 35.0%
ATATCCAAATTCATTCAGGC+AGG - chr6.1:3173813-3173832 None:intergenic 35.0%
ATGGTATTTGTTTGGATGGT+TGG + chr6.1:3173155-3173174 MS.gene54645:intron 35.0%
CTAATTGCTGACGAGAAAAA+TGG - chr6.1:3173894-3173913 None:intergenic 35.0%
CTTCAATCTAGTTGATCTAC+GGG - chr6.1:3174267-3174286 None:intergenic 35.0%
CTTGGTTGTGCATCAAAATT+TGG + chr6.1:3173458-3173477 MS.gene54645:intron 35.0%
GAATGAGAAACTCAAATCTG+AGG + chr6.1:3174565-3174584 MS.gene54645:CDS 35.0%
TAATCACCTTCTTTGGTAAG+TGG - chr6.1:3174926-3174945 None:intergenic 35.0%
TAGTGTAGAATCTTATGGGT+AGG - chr6.1:3174967-3174986 None:intergenic 35.0%
TATTTGTTTGGATGGTTGGT+GGG + chr6.1:3173159-3173178 MS.gene54645:intron 35.0%
TGTTGAAAGTAGGGAATCAT+AGG - chr6.1:3174525-3174544 None:intergenic 35.0%
TTATACTGAACACCTTCACT+CGG - chr6.1:3173227-3173246 None:intergenic 35.0%
TTCAATCAGAGGAAGATGAT+GGG + chr6.1:3175495-3175514 MS.gene54645:CDS 35.0%
TTTCTTGGAAATGCTGATCT+TGG + chr6.1:3173026-3173045 MS.gene54645:CDS 35.0%
! ATGAGTTGAGTTAGGTCTTA+TGG + chr6.1:3173260-3173279 MS.gene54645:intron 35.0%
! ATGGGTTTGAGTTTCTGTAT+AGG + chr6.1:3174851-3174870 MS.gene54645:intron 35.0%
! CAACATGTTGACTATTTCAC+AGG + chr6.1:3175211-3175230 MS.gene54645:intron 35.0%
! GATTGGTTAAGGAGAAGTTT+AGG + chr6.1:3174089-3174108 MS.gene54645:intron 35.0%
! GGTGGGAGATTTTCTTTTTT+TGG + chr6.1:3173289-3173308 MS.gene54645:intron 35.0%
! TCAGCTTTCTTTTCTGACAA+AGG - chr6.1:3175290-3175309 None:intergenic 35.0%
!! AACATGAACATGCTGTTTCT+TGG + chr6.1:3173011-3173030 MS.gene54645:CDS 35.0%
AAAATATTTAGTCCCCGGAG+AGG + chr6.1:3174234-3174253 MS.gene54645:intron 40.0%
AAAATCTGAGCTATGTCCAC+TGG - chr6.1:3175320-3175339 None:intergenic 40.0%
AGAAACTAGGATTGCAACCT+AGG + chr6.1:3174417-3174436 MS.gene54645:CDS 40.0%
AGGTGATTAGGAGCTATCAA+AGG + chr6.1:3174937-3174956 MS.gene54645:intron 40.0%
AGGTTGCAATCCTAGTTTCT+TGG - chr6.1:3174417-3174436 None:intergenic 40.0%
ATCTAGTTGATCTACGGGTT+TGG - chr6.1:3174262-3174281 None:intergenic 40.0%
GAGCAACATAACCATGAAGA+GGG + chr6.1:3175566-3175585 MS.gene54645:CDS 40.0%
GGTGACTGAAAATTTCCAGT+AGG + chr6.1:3174133-3174152 MS.gene54645:intron 40.0%
GTATTTGTTTGGATGGTTGG+TGG + chr6.1:3173158-3173177 MS.gene54645:intron 40.0%
GTTCAATCAGAGGAAGATGA+TGG + chr6.1:3175494-3175513 MS.gene54645:CDS 40.0%
TAGCTCCTAATCACCTTCTT+TGG - chr6.1:3174933-3174952 None:intergenic 40.0%
TATACTGAACACCTTCACTC+GGG - chr6.1:3173226-3173245 None:intergenic 40.0%
TATGTTGGAGAAGAGCTTTG+AGG + chr6.1:3174352-3174371 MS.gene54645:CDS 40.0%
TCCTCATCATACAGTTCATC+CGG - chr6.1:3173726-3173745 None:intergenic 40.0%
TGAGCAACATAACCATGAAG+AGG + chr6.1:3175565-3175584 MS.gene54645:CDS 40.0%
TGATTAGGAGCTATCAAAGG+AGG + chr6.1:3174940-3174959 MS.gene54645:intron 40.0%
TGGTTAAGGAGAAGTTTAGG+TGG + chr6.1:3174092-3174111 MS.gene54645:intron 40.0%
TGTATGGTTTCAGAACCGTA+GGG + chr6.1:3174448-3174467 MS.gene54645:CDS 40.0%
TTGATTCTTCTGCTTGTCGT+GGG + chr6.1:3172985-3173004 MS.gene54645:CDS 40.0%
TTTGATTCTTCTGCTTGTCG+TGG + chr6.1:3172984-3173003 MS.gene54645:CDS 40.0%
! AGCTCAGATTTTCAGCATCA+AGG + chr6.1:3175328-3175347 MS.gene54645:CDS 40.0%
! AGTTAGGTCTTATGGACAGA+TGG + chr6.1:3173268-3173287 MS.gene54645:intron 40.0%
! CATGTTGACTATTTCACAGG+TGG + chr6.1:3175214-3175233 MS.gene54645:intron 40.0%
! GAAATTTTCAGTCACCAGAG+AGG - chr6.1:3174129-3174148 None:intergenic 40.0%
! TAAAAGAGGGGTATGTAAGG+TGG + chr6.1:3175141-3175160 MS.gene54645:intron 40.0%
! TCAGATTTTCAGCATCAAGG+TGG + chr6.1:3175331-3175350 MS.gene54645:CDS 40.0%
!! AAAGGCTTTTTCTTCACACC+AGG - chr6.1:3175035-3175054 None:intergenic 40.0%
!! AAGATGATGGGAGTGATGAT+GGG + chr6.1:3175507-3175526 MS.gene54645:CDS 40.0%
!! AATGCTGATCTTGGTTTTCG+AGG + chr6.1:3173035-3173054 MS.gene54645:CDS 40.0%
AACAATGACACCAACGACAC+GGG - chr6.1:3175411-3175430 None:intergenic 45.0%
AAGGTCAATGATGAGCATGG+GGG + chr6.1:3173668-3173687 MS.gene54645:CDS 45.0%
ACATAACCATGAAGAGGGAG+AGG + chr6.1:3175571-3175590 MS.gene54645:CDS 45.0%
ACCGGATGAACTGTATGATG+AGG + chr6.1:3173722-3173741 MS.gene54645:CDS 45.0%
AGAACAAACTTGAGCCAGAG+AGG + chr6.1:3174378-3174397 MS.gene54645:CDS 45.0%
AGGAAGGTCAATGATGAGCA+TGG + chr6.1:3173665-3173684 MS.gene54645:intron 45.0%
ATCCTAGTTTCTTGGCCAAC+TGG - chr6.1:3174409-3174428 None:intergenic 45.0%
CAACAATGACACCAACGACA+CGG - chr6.1:3175412-3175431 None:intergenic 45.0%
CACACACAACTGAGAAGTTC+AGG + chr6.1:3173194-3173213 MS.gene54645:intron 45.0%
CTCAGTTGTGTGTGAGTTTC+AGG - chr6.1:3173188-3173207 None:intergenic 45.0%
CTGTATGGTTTCAGAACCGT+AGG + chr6.1:3174447-3174466 MS.gene54645:CDS 45.0%
CTTGCCTGCCTGAATGAATT+TGG + chr6.1:3173806-3173825 MS.gene54645:intron 45.0%
GAAGGTCAATGATGAGCATG+GGG + chr6.1:3173667-3173686 MS.gene54645:CDS 45.0%
GGAAGGTCAATGATGAGCAT+GGG + chr6.1:3173666-3173685 MS.gene54645:intron 45.0%
GTACTACGAAGAACAGTCAC+CGG + chr6.1:3173746-3173765 MS.gene54645:CDS 45.0%
TAGGATCGAGTAAGACTGGT+TGG + chr6.1:3174152-3174171 MS.gene54645:intron 45.0%
TCAGTCACCAGAGAGGATTT+GGG - chr6.1:3174122-3174141 None:intergenic 45.0%
TCATCCGGTGAGCTAAAGAA+AGG - chr6.1:3173711-3173730 None:intergenic 45.0%
TCCTAGTTTCTTGGCCAACT+GGG - chr6.1:3174408-3174427 None:intergenic 45.0%
TGACAACTATGCTGGATGTG+TGG + chr6.1:3175457-3175476 MS.gene54645:CDS 45.0%
TTCAGTCACCAGAGAGGATT+TGG - chr6.1:3174123-3174142 None:intergenic 45.0%
TTGTCTTCCATCTAGCCCTA+CGG - chr6.1:3174466-3174485 None:intergenic 45.0%
TTTCCAGCTGACAACTATGC+TGG + chr6.1:3175449-3175468 MS.gene54645:CDS 45.0%
! AGGATCGAGTAAGACTGGTT+GGG + chr6.1:3174153-3174172 MS.gene54645:intron 45.0%
! AGGTCTTATGGACAGATGGT+GGG + chr6.1:3173272-3173291 MS.gene54645:intron 45.0%
! CTTTTTCTTCACACCAGGTG+GGG - chr6.1:3175030-3175049 None:intergenic 45.0%
! GAGACCTTTCTTTAGCTCAC+CGG + chr6.1:3173704-3173723 MS.gene54645:CDS 45.0%
! TAGGTCTTATGGACAGATGG+TGG + chr6.1:3173271-3173290 MS.gene54645:intron 45.0%
!! GAAGATGATGGGAGTGATGA+TGG + chr6.1:3175506-3175525 MS.gene54645:CDS 45.0%
!! GCTTTTTCTTCACACCAGGT+GGG - chr6.1:3175031-3175050 None:intergenic 45.0%
ACAATGACACCAACGACACG+GGG - chr6.1:3175410-3175429 None:intergenic 50.0%
ACCCAGTTGGCCAAGAAACT+AGG + chr6.1:3174404-3174423 MS.gene54645:CDS 50.0%
ACTAGGATTGCAACCTAGGC+AGG + chr6.1:3174421-3174440 MS.gene54645:CDS 50.0%
AGGCAAGAAACCAACCTGCT+CGG - chr6.1:3173793-3173812 None:intergenic 50.0%
CAACGCTTCCAGAACTCATG+TGG - chr6.1:3175361-3175380 None:intergenic 50.0%
CATCCAGCATAGTTGTCAGC+TGG - chr6.1:3175455-3175474 None:intergenic 50.0%
CCAGTAGGATCGAGTAAGAC+TGG + chr6.1:3174148-3174167 MS.gene54645:intron 50.0%
CCAGTCTTACTCGATCCTAC+TGG - chr6.1:3174151-3174170 None:intergenic 50.0%
GAAAGCTGATCCACTTCCAG+TGG + chr6.1:3175301-3175320 MS.gene54645:CDS 50.0%
GTGGATGACCACATGAGTTC+TGG + chr6.1:3175350-3175369 MS.gene54645:CDS 50.0%
TCAATGATGAGCATGGGGGA+AGG + chr6.1:3173672-3173691 MS.gene54645:CDS 50.0%
TGAGCTATGTCCACTGGAAG+TGG - chr6.1:3175314-3175333 None:intergenic 50.0%
TGGAGAACCCAAATCCTCTC+TGG + chr6.1:3174112-3174131 MS.gene54645:intron 50.0%
TTCAGAACCGTAGGGCTAGA+TGG + chr6.1:3174456-3174475 MS.gene54645:CDS 50.0%
!! AAGAGGGAGAGGCACTGAAT+TGG + chr6.1:3175582-3175601 MS.gene54645:CDS 50.0%
!! ATGATGGGAGTGATGATGGG+AGG + chr6.1:3175510-3175529 MS.gene54645:CDS 50.0%
!! CACATGAGTTCTGGAAGCGT+TGG + chr6.1:3175359-3175378 MS.gene54645:CDS 50.0%
!! GGCTTTTTCTTCACACCAGG+TGG - chr6.1:3175032-3175051 None:intergenic 50.0%
AACCAACCTGCTCGGAAGTG+AGG - chr6.1:3173785-3173804 None:intergenic 55.0%
AACCATACAGCCACCTGCCT+AGG - chr6.1:3174437-3174456 None:intergenic 55.0%
AACCTAGGCAGGTGGCTGTA+TGG + chr6.1:3174432-3174451 MS.gene54645:CDS 55.0%
AGGATTGCAACCTAGGCAGG+TGG + chr6.1:3174424-3174443 MS.gene54645:CDS 55.0%
CAATGACACCAACGACACGG+GGG - chr6.1:3175409-3175428 None:intergenic 55.0%
GCATGGGGGAAGGCTCAAAA+AGG + chr6.1:3173682-3173701 MS.gene54645:CDS 55.0%
GCCAGAGAGGAAAACCCAGT+TGG + chr6.1:3174391-3174410 MS.gene54645:CDS 55.0%
TCAGGTTCGAACCCGAGTGA+AGG + chr6.1:3173212-3173231 MS.gene54645:intron 55.0%
TCAGTGCCTCTCCCTCTTCA+TGG - chr6.1:3175580-3175599 None:intergenic 55.0%
! CATCTGTTCTGAACCCCACC+TGG + chr6.1:3175014-3175033 MS.gene54645:intron 55.0%
! CTACGGGTTTGGTTCCTCTC+CGG - chr6.1:3174251-3174270 None:intergenic 55.0%
! GCCAACTGGGTTTTCCTCTC+TGG - chr6.1:3174395-3174414 None:intergenic 55.0%
! TACGGGTTTGGTTCCTCTCC+GGG - chr6.1:3174250-3174269 None:intergenic 55.0%
!! AAGCGTTGGAAGTGCAGTGG+TGG + chr6.1:3175373-3175392 MS.gene54645:CDS 55.0%
!! AGGGAGAGGCACTGAATTGG+TGG + chr6.1:3175585-3175604 MS.gene54645:CDS 55.0%
!! GGAGAGGCACTGAATTGGTG+GGG + chr6.1:3175587-3175606 MS.gene54645:CDS 55.0%
!! GGGAGAGGCACTGAATTGGT+GGG + chr6.1:3175586-3175605 MS.gene54645:CDS 55.0%
!! TGGAAGCGTTGGAAGTGCAG+TGG + chr6.1:3175370-3175389 MS.gene54645:CDS 55.0%
CAACCTGCTCGGAAGTGAGG+CGG - chr6.1:3173782-3173801 None:intergenic 60.0%
! ACGGGTTTGGTTCCTCTCCG+GGG - chr6.1:3174249-3174268 None:intergenic 60.0%
CGCCTCACTTCCGAGCAGGT+TGG + chr6.1:3173780-3173799 MS.gene54645:intron 65.0%
GAGAGTAGCCCCCGTGTCGT+TGG + chr6.1:3175398-3175417 MS.gene54645:CDS 65.0%
GTGAGGCGGCGCTTCTTCTC+CGG - chr6.1:3173768-3173787 None:intergenic 65.0%
GCGCCGCCTCACTTCCGAGC+AGG + chr6.1:3173776-3173795 MS.gene54645:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 3172963 3175631 3172963 ID=MS.gene54645
chr6.1 mRNA 3172963 3175631 3172963 ID=MS.gene54645.t1;Parent=MS.gene54645
chr6.1 exon 3172963 3173056 3172963 ID=MS.gene54645.t1.exon1;Parent=MS.gene54645.t1
chr6.1 CDS 3172963 3173056 3172963 ID=cds.MS.gene54645.t1;Parent=MS.gene54645.t1
chr6.1 exon 3173667 3173797 3173667 ID=MS.gene54645.t1.exon2;Parent=MS.gene54645.t1
chr6.1 CDS 3173667 3173797 3173667 ID=cds.MS.gene54645.t1;Parent=MS.gene54645.t1
chr6.1 exon 3174347 3174586 3174347 ID=MS.gene54645.t1.exon3;Parent=MS.gene54645.t1
chr6.1 CDS 3174347 3174586 3174347 ID=cds.MS.gene54645.t1;Parent=MS.gene54645.t1
chr6.1 exon 3175233 3175631 3175233 ID=MS.gene54645.t1.exon4;Parent=MS.gene54645.t1
chr6.1 CDS 3175233 3175631 3175233 ID=cds.MS.gene54645.t1;Parent=MS.gene54645.t1
Gene Sequence

>MS.gene54645

ATGGAGTCTGGTCGTCTTTACTTTGATTCTTCTGCTTGTCGTGGGAATAACATGAACATGCTGTTTCTTGGAAATGCTGATCTTGGTTTTCGAGGTATTTTTCTTAATCTATTGAGTTTTTATGGTACCATTTTGTTTTTTTGGATTGTAAATTGTTGGTTTTGTTGTTTGGTTTGCTTTGTTTTGTTAAGAATGGTATTTGTTTGGATGGTTGGTGGGACACCTGAAACTCACACACAACTGAGAAGTTCAGGTTCGAACCCGAGTGAAGGTGTTCAGTATAACAATATTGATTTTATGAGTTGAGTTAGGTCTTATGGACAGATGGTGGGAGATTTTCTTTTTTTGGTTAGGAAAAGATATGATATGATTTGATTTGATTTGATTTGATTTGATTTGGGTTTTTGGTAAAAGAAGCAACTTGATCGTGTATCAAATTTGGGCACACAAAAAAAGAAGATATGATTTGATTTGAGTTTTTGTTAAAGGAAGCAACTTGGTTGTGCATCAAAATTTGGCTATGAGAAATAATGAATTAGAATTTTTCTCTCTTTTTTTTTTAAAAAATTTTGTTTTTTGTTTATGATTTTGTGTTTGTAAGTGTTATGATTTGTGATATAGATGTTGTTTGAAGTGTTTGATGTAGAAAACGAGTGTAAATTGATGAGGTTGTTAATTTTTTGAATTTTTTTGAATGAAAGCAGGAAGGTCAATGATGAGCATGGGGGAAGGCTCAAAAAGGAGACCTTTCTTTAGCTCACCGGATGAACTGTATGATGAGGAGTACTACGAAGAACAGTCACCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTTGGTTTCTTGCCTGCCTGAATGAATTTGGATATGTTTTTCATTATCTTGTGCTGATACTCTAACTATGAAAGAAACTATATTAATTTTTGTCCATTTTTCTCGTCAGCAATTAGTCTCACATCTAATATGATATGTGTTTAGCTTTTAATTAATGCAATATGTGTGAAAAATGAGGGTTGACTTTCAATTGCAATTTGATTTTGTAGTCATCAATTAATTGATTTTGAAACCATTTATTTATTAGTGTTTGTATATCAAAACTACATGTACTTGTTTATTAGTTTTAGTGATTGGTTAAGGAGAAGTTTAGGTGGAGAACCCAAATCCTCTCTGGTGACTGAAAATTTCCAGTAGGATCGAGTAAGACTGGTTGGGATATAATGATAATATTTATACAAGTATTATATTCAACCAGTCTTTTTCTCTTATACTGAAAATATTTAGTCCCCGGAGAGGAACCAAACCCGTAGATCAACTAGATTGAAGAGAGAGATATTACATGATATTAGTTTTTGTGATTAACTAACTTTGTGGTTTGATGAATAGGTACATATGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTTGAGCCAGAGAGGAAAACCCAGTTGGCCAAGAAACTAGGATTGCAACCTAGGCAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTCAAGTCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTACTAAGGAGAATGAGAAACTCAAATCTGAGGTATTTAACTACATATGTATTGTATAATCAAATGTGTGCATTTATAGTAGTTACGATTAAAATCAAATGTTTTTAATGGTCGGACGGTTATGATTGATCGACAACGTAAAAAAATTGTATATAAATTAAGTACTGTACTATTACTATTATTAGTTAGATTTTGTTATGCTATATATGCAAATTGAGAATTTGGTGAAGTCTGAAATGATTAGTGTTATGCATTAAAAAGGTAATGAATAGAATATAAATTGTCTGTCAAAAGTTATGGGTTTGAGTTTCTGTATAGGATAGAATTAGTGGCTTTACAATCAGAACTCCATCATAAGAAGCAAATTTCCACTTACCAAAGAAGGTGATTAGGAGCTATCAAAGGAGGTCCTACCCATAAGATTCTACACTATATTAATCACATACTAACAAAGAGTAGCATCTGTTCTGAACCCCACCTGGTGTGAAGAAAAAGCCTTTTCAAAGTAACTATGCGAATATACTTTTCTAGAGTTCTAAAAATATGCTTAAAACTTTCATTTTGTGATAAAGACTAATGAGTTTTTTAAAAGAGGGGTATGTAAGGTGGACCATAAAATAGTTAACAAGTGGAAAATGAAGTATTGATTATCTTAACAACATGTTGACTATTTCACAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGATATGCTTGAAGAACCTTTGTCAGAAAAGAAAGCTGATCCACTTCCAGTGGACATAGCTCAGATTTTCAGCATCAAGGTGGATGACCACATGAGTTCTGGAAGCGTTGGAAGTGCAGTGGTGGACGAGAGTAGCCCCCGTGTCGTTGGTGTCATTGTTGACAGCGTCGATTCATACTTTCCAGCTGACAACTATGCTGGATGTGTGGCTCCTATTGAAAGAGTTCAATCAGAGGAAGATGATGGGAGTGATGATGGGAGGAACTACTTTGATGTGTTTGTTGCATCTGAAACTGAGCAACATAACCATGAAGAGGGAGAGGCACTGAATTGGTGGGGTAATATGTATTATGTTGCATAA
Protein sequence

>MS.gene54645.t1

MESGRLYFDSSACRGNNMNMLFLGNADLGFRGRSMMSMGEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSITKENEKLKSEVVSLNEKLQVQAKDMLEEPLSEKKADPLPVDIAQIFSIKVDDHMSSGSVGSAVVDESSPRVVGVIVDSVDSYFPADNYAGCVAPIERVQSEEDDGSDDGRNYFDVFVASETEQHNHEEGEALNWWGNMYYVA