AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54879

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54879.t1 MTR_2g097410 90.698 86 8 0 5 90 336 421 2.26e-44 160
MS.gene54879.t1 MTR_3g087300 92.727 55 4 0 5 59 154 208 5.02e-27 105
MS.gene54879.t1 MTR_4g064150 63.889 72 26 0 19 90 340 411 5.55e-26 107
MS.gene54879.t1 MTR_2g089030 57.447 94 38 2 174 267 227 318 1.58e-24 103
MS.gene54879.t1 MTR_4g064160 60.494 81 32 0 9 89 285 365 1.28e-23 100
MS.gene54879.t1 MTR_4g064120 62.857 70 26 0 21 90 235 304 4.45e-23 99.4
MS.gene54879.t1 MTR_7g062120 51.579 95 42 1 22 112 354 448 1.56e-22 97.8
MS.gene54879.t1 MTR_4g064180 61.429 70 27 0 21 90 235 304 2.12e-22 97.1
MS.gene54879.t1 MTR_3g110530 93.478 46 3 0 129 174 208 253 2.58e-22 95.9
MS.gene54879.t1 MTR_2g097390 53.165 79 37 0 11 89 246 324 3.53e-19 87.8
MS.gene54879.t1 MTR_2g097350 57.812 64 27 0 26 89 260 323 1.91e-18 85.5
MS.gene54879.t1 MTR_4g045667 56.164 73 29 1 158 227 135 207 4.50e-18 84.3
MS.gene54879.t1 MTR_2g097310 60.317 63 22 1 30 89 259 321 2.37e-17 82.4
MS.gene54879.t1 MTR_2g097463 55.556 72 30 1 20 89 268 339 3.03e-16 79.0
MS.gene54879.t1 MTR_4g064200 62.500 56 21 0 34 89 278 333 2.08e-15 76.6
MS.gene54879.t1 MTR_2g097467 50.649 77 31 2 20 89 262 338 4.37e-14 72.8
MS.gene54879.t1 MTR_2g097473 49.351 77 32 1 20 89 262 338 1.18e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54879.t1 AT1G07530 52.381 84 38 1 8 89 362 445 1.76e-20 91.7
MS.gene54879.t1 AT1G07520 42.963 135 48 4 4 112 116 247 2.63e-19 88.2
MS.gene54879.t1 AT1G07520 42.963 135 48 4 4 112 116 247 2.63e-19 88.2
MS.gene54879.t1 AT2G32290 50.000 90 43 2 174 263 219 306 2.92e-19 87.8
MS.gene54879.t1 AT1G07520 42.963 135 48 4 4 112 280 411 3.23e-19 87.8
MS.gene54879.t1 AT1G07520 42.963 135 48 4 4 112 281 412 3.24e-19 87.8
MS.gene54879.t1 AT2G37650 52.703 74 35 0 28 101 335 408 2.37e-17 82.4
MS.gene54879.t1 AT2G37650 52.703 74 35 0 28 101 323 396 2.97e-17 82.0
MS.gene54879.t1 AT4G15210 62.963 54 20 0 174 227 103 156 3.26e-17 81.6
MS.gene54879.t1 AT4G15210 62.963 54 20 0 174 227 103 156 3.26e-17 81.6
MS.gene54879.t1 AT4G15210 62.963 54 20 0 174 227 156 209 3.30e-17 81.6
MS.gene54879.t1 AT4G15210 62.963 54 20 0 174 227 156 209 3.61e-17 81.6
MS.gene54879.t1 AT2G29060 48.718 78 40 0 20 97 264 341 6.56e-17 81.3
MS.gene54879.t1 AT2G29060 48.718 78 40 0 20 97 301 378 6.71e-17 81.3
MS.gene54879.t1 AT2G29065 62.500 56 21 0 34 89 246 301 8.07e-14 72.0
MS.gene54879.t1 AT5G59450 47.945 73 35 1 20 89 204 276 5.25e-13 69.3
MS.gene54879.t1 AT3G46600 37.273 110 51 2 21 113 193 301 8.08e-13 68.9
MS.gene54879.t1 AT3G46600 37.273 110 51 2 21 113 161 269 8.23e-13 68.9
MS.gene54879.t1 AT4G00490 50.000 54 27 0 174 227 236 289 8.35e-11 62.8

Find 68 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCGTCTTTCGCGGTTTCT+TGG 0.271778 2.1:+9969356 MS.gene54879:CDS
GACTGGGTATTTCTTGGTAT+TGG 0.274714 2.1:+9970014 MS.gene54879:CDS
AGTGACTATGACAATGTAAT+TGG 0.287106 2.1:+9968117 MS.gene54879:CDS
GAAGAGTTATAGAGAGAATA+TGG 0.309022 2.1:+9969899 MS.gene54879:CDS
AGGAAGCATTCTTGTCCTTC+AGG 0.331779 2.1:+9967553 MS.gene54879:CDS
GTTATGTGGATTTCACTCTT+TGG 0.332758 2.1:+9969322 MS.gene54879:CDS
TCGCGGTTTCTTGGTAAAAC+AGG 0.335407 2.1:+9969365 MS.gene54879:CDS
TGCCTAGACTGGGTATTTCT+TGG 0.342837 2.1:+9970008 MS.gene54879:CDS
AATCCTGGACTCACCGCTTA+TGG 0.358745 2.1:-9970380 None:intergenic
TTTCTGCTTACTTTCAGATA+TGG 0.359746 2.1:-9968147 None:intergenic
CCGCTTATGGTGACATCATA+AGG 0.359764 2.1:-9970367 None:intergenic
TCCCTCTCATGCATGATATC+TGG 0.374941 2.1:-9970410 None:intergenic
TGTGGATTTGAGGACCCTTT+TGG 0.385294 2.1:+9967465 MS.gene54879:CDS
CTTTAGGTTCCTTTGTTATG+TGG 0.393628 2.1:+9969308 MS.gene54879:intron
CAGGTTCTACATGGTGCATC+TGG 0.398474 2.1:+9967279 None:intergenic
ATGAATTGTTGAAGCAGAAT+AGG 0.424251 2.1:+9967533 MS.gene54879:CDS
CTGTGTCTGCTAATGACAAT+AGG 0.426533 2.1:+9967503 MS.gene54879:CDS
ATAAGGGCTGGTGCACCTAC+TGG 0.427494 2.1:-9970350 None:intergenic
AGAGGGATGTTGTGGATTTG+AGG 0.451718 2.1:+9967455 MS.gene54879:CDS
ACACAGGTTGGTGAACTTGA+TGG 0.468419 2.1:+9967400 MS.gene54879:CDS
ATATCTGGCCTCACTAATCC+TGG 0.482839 2.1:-9970395 None:intergenic
AAACAGCATCTCGTCTTTCG+CGG 0.485483 2.1:+9969348 MS.gene54879:CDS
GAGGTAGGACTTGGCCCTGC+TGG 0.486945 2.1:+9969957 MS.gene54879:CDS
CGAAGAAACAAGGGAGGAAG+AGG 0.489890 2.1:+9967437 MS.gene54879:CDS
CTTATAAGCGTGTACGTGGC+AGG 0.500665 2.1:+9970209 MS.gene54879:CDS
TCACCATAAGCGGTGAGTCC+AGG 0.505916 2.1:+9970377 MS.gene54879:CDS
CGCTTATGGTGACATCATAA+GGG 0.505983 2.1:-9970366 None:intergenic
CGCGGTTTCTTGGTAAAACA+GGG 0.510516 2.1:+9969366 MS.gene54879:CDS
GCCACTTGAAGGTGGTCTCA+AGG 0.522314 2.1:+9968305 MS.gene54879:CDS
ACCTCCTCTTCTTCTCCAGA+TGG 0.522445 2.1:+9969424 MS.gene54879:CDS
AAAGCTTAATGTAAGAATCT+CGG 0.527749 2.1:-9970155 None:intergenic
AGGGAGGAAGAGGGATGTTG+TGG 0.530372 2.1:+9967447 MS.gene54879:CDS
AGATATCTAAGTTCTCCAGC+AGG 0.532605 2.1:-9969972 None:intergenic
AGGTGATGCATCACAGAGAA+TGG 0.535230 2.1:+9967573 MS.gene54879:CDS
AAATTGGAAATGCAGGGGAC+AGG 0.536511 2.1:+9970324 MS.gene54879:intron
CTCTGTGATGCATCACCTGA+AGG 0.537655 2.1:-9967568 None:intergenic
CAAAAGGATGGATCAGTGGT+GGG 0.540630 2.1:+9967370 MS.gene54879:intron
CTTGTGCACACAGAACCAAA+AGG 0.550869 2.1:-9967480 None:intergenic
TATGGTGACATCATAAGGGC+TGG 0.556208 2.1:-9970362 None:intergenic
TCCTTGAGACCACCTTCAAG+TGG 0.557613 2.1:-9968306 None:intergenic
CGAACCATCTGGAGAAGAAG+AGG 0.566975 2.1:-9969428 None:intergenic
GCTTTACTCATGATGCTGAA+AGG 0.577029 2.1:+9970173 MS.gene54879:CDS
TTGTGCACACAGAACCAAAA+GGG 0.577974 2.1:-9967479 None:intergenic
CCTTATGATGTCACCATAAG+CGG 0.579231 2.1:+9970367 MS.gene54879:CDS
TACCAAGAAATACCCAGTCT+AGG 0.594121 2.1:-9970010 None:intergenic
ATAGACATTGAGGTAGGACT+TGG 0.597655 2.1:+9969948 MS.gene54879:CDS
TGAGCTACTGATAGACATTG+AGG 0.599509 2.1:+9969938 MS.gene54879:CDS
TGGTGAACTTGATGGAGGGA+AGG 0.605242 2.1:+9967408 MS.gene54879:CDS
ACAAAAGGATGGATCAGTGG+TGG 0.605810 2.1:+9967369 MS.gene54879:intron
GAATGCGATTGAAGCGCGCA+TGG 0.609128 2.1:+9967609 MS.gene54879:CDS
CAGTCTTATAAGCGTGTACG+TGG 0.609552 2.1:+9970205 MS.gene54879:CDS
AAGGCACGTTCGAAGAAACA+AGG 0.620215 2.1:+9967427 MS.gene54879:CDS
GATATCTAAGTTCTCCAGCA+GGG 0.632849 2.1:-9969971 None:intergenic
CAGGTTGGTGAACTTGATGG+AGG 0.633962 2.1:+9967403 MS.gene54879:CDS
TGAAGGTGGTCTCAAGGACA+AGG 0.634896 2.1:+9968311 MS.gene54879:CDS
AAAAGGATGGATCAGTGGTG+GGG 0.638533 2.1:+9967371 MS.gene54879:intron
CTACTGATAGACATTGAGGT+AGG 0.639731 2.1:+9969942 MS.gene54879:CDS
AGGTTGGTGAACTTGATGGA+GGG 0.640702 2.1:+9967404 MS.gene54879:CDS
ACCATCTGGAGAAGAAGAGG+AGG 0.646740 2.1:-9969425 None:intergenic
GAAGAAACAAGGGAGGAAGA+GGG 0.647199 2.1:+9967438 MS.gene54879:CDS
AGTGGTGGGGAGTAGAACAC+AGG 0.661039 2.1:+9967384 MS.gene54879:CDS
CGGTGAGTCCAGGATTAGTG+AGG 0.671978 2.1:+9970387 MS.gene54879:CDS
GCAGGGGACAGGCTTCCAGT+AGG 0.671994 2.1:+9970335 MS.gene54879:intron
GAGTGAAATCCACATAACAA+AGG 0.672556 2.1:-9969317 None:intergenic
TGAACAAAAGGATGGATCAG+TGG 0.692488 2.1:+9967366 MS.gene54879:intron
GTGGGGAGTAGAACACAGGT+TGG 0.695448 2.1:+9967388 MS.gene54879:CDS
CACGTTCGAAGAAACAAGGG+AGG 0.709283 2.1:+9967431 MS.gene54879:CDS
AGGCACGTTCGAAGAAACAA+GGG 0.717525 2.1:+9967428 MS.gene54879:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAACAACTTTCAAA+TGG - chr2.1:9968262-9968281 None:intergenic 15.0%
!! AAAGAAGTAATAATAAAAAG+TGG - chr2.1:9969774-9969793 None:intergenic 15.0%
!! AAAGATATTAAATTCATGTA+AGG + chr2.1:9969458-9969477 MS.gene54879:intron 15.0%
!! AAATTATTGAGAAATAATGT+TGG + chr2.1:9968468-9968487 MS.gene54879:intron 15.0%
!! TGGAATATTTATATGAAAAT+TGG + chr2.1:9970308-9970327 MS.gene54879:intron 15.0%
!! TTACATGAATTTAATATCTT+TGG - chr2.1:9969459-9969478 None:intergenic 15.0%
!!! ATATATGTTGTTTTGTAAAT+AGG + chr2.1:9967998-9968017 MS.gene54879:intron 15.0%
!!! CATAACAAATTTTAGTAAAA+TGG - chr2.1:9970275-9970294 None:intergenic 15.0%
!!! TTTATTTTACAAATGAATTG+AGG + chr2.1:9968274-9968293 MS.gene54879:CDS 15.0%
!! ACTATATGAATTTCAGAATT+TGG + chr2.1:9968751-9968770 MS.gene54879:intron 20.0%
!! CATATATAATATTTGTGTAC+TGG - chr2.1:9967647-9967666 None:intergenic 20.0%
!! GTAGGTATTTATTGAATAAA+TGG + chr2.1:9968391-9968410 MS.gene54879:intron 20.0%
!! GTATGTAACAAACAAAAATA+TGG - chr2.1:9968808-9968827 None:intergenic 20.0%
!! TATGTATATTATCTTGCATA+TGG + chr2.1:9968414-9968433 MS.gene54879:intron 20.0%
!! TATTATATCTCTTTCTCTAT+AGG + chr2.1:9969558-9969577 MS.gene54879:intron 20.0%
!! TGAACTAAAACAAAAGAATA+CGG - chr2.1:9969637-9969656 None:intergenic 20.0%
!! TGTTATAATAATGAGTGAAT+AGG + chr2.1:9968495-9968514 MS.gene54879:intron 20.0%
!! TGTTATGTAATGTTTAATGT+TGG + chr2.1:9970288-9970307 MS.gene54879:intron 20.0%
!!! AAATGTGCAAATTTTTTGAA+AGG - chr2.1:9967733-9967752 None:intergenic 20.0%
!!! AAGCATTTATTTTTATCTGA+TGG + chr2.1:9969389-9969408 MS.gene54879:CDS 20.0%
!!! AATGTGCAAATTTTTTGAAA+GGG - chr2.1:9967732-9967751 None:intergenic 20.0%
!!! ACATACATCTTTAAAAAACA+TGG - chr2.1:9967834-9967853 None:intergenic 20.0%
!!! ATATAGTTAGTATCACTTTT+AGG + chr2.1:9968889-9968908 MS.gene54879:intron 20.0%
!!! GTTTTTTAAAGATGTATGTT+TGG + chr2.1:9967835-9967854 MS.gene54879:intron 20.0%
!!! TTTAAAAAACATGGCAATTT+TGG - chr2.1:9967825-9967844 None:intergenic 20.0%
! AAAGCTTAATGTAAGAATCT+CGG - chr2.1:9970158-9970177 None:intergenic 25.0%
! AATTCATATAGTTGAAGAAC+AGG - chr2.1:9968743-9968762 None:intergenic 25.0%
! AGAACACATATAATTGTGTT+TGG + chr2.1:9968342-9968361 MS.gene54879:intron 25.0%
! AGTTAGAGATGAGAAAATTA+AGG - chr2.1:9968061-9968080 None:intergenic 25.0%
! AGTTCCTGATGATTATATTT+AGG + chr2.1:9968552-9968571 MS.gene54879:intron 25.0%
! ATAATTGTGTTTGTTCATGA+AGG + chr2.1:9967903-9967922 MS.gene54879:intron 25.0%
! ATATGAAAATTGGAAATGCA+GGG + chr2.1:9970318-9970337 MS.gene54879:intron 25.0%
! CAAACCTAAATATAATCATC+AGG - chr2.1:9968559-9968578 None:intergenic 25.0%
! GATAGTAATAGAATATGCAA+AGG - chr2.1:9969670-9969689 None:intergenic 25.0%
! GCAGACGTAATAAAATTAAT+AGG - chr2.1:9969007-9969026 None:intergenic 25.0%
! GTAACAAACAAAAATATGGT+GGG - chr2.1:9968804-9968823 None:intergenic 25.0%
! GTACAGAAATTTGAATTCAT+TGG + chr2.1:9967305-9967324 MS.gene54879:intron 25.0%
! GTTAGAGATGAGAAAATTAA+GGG - chr2.1:9968060-9968079 None:intergenic 25.0%
! GTTATTGAGGGTAATTAAAT+AGG + chr2.1:9969195-9969214 MS.gene54879:intron 25.0%
! TAGGAAACTTCTATTTGATT+AGG + chr2.1:9968017-9968036 MS.gene54879:intron 25.0%
! TATATGAAAATTGGAAATGC+AGG + chr2.1:9970317-9970336 MS.gene54879:intron 25.0%
! TGTAACAAACAAAAATATGG+TGG - chr2.1:9968805-9968824 None:intergenic 25.0%
! TTAAAGATGTATGTTTGGAT+TGG + chr2.1:9967840-9967859 MS.gene54879:intron 25.0%
!! ATTTTACAAATGAATTGAGG+TGG + chr2.1:9968277-9968296 MS.gene54879:CDS 25.0%
!! TATCTTCAATGATTTGTGTA+TGG + chr2.1:9968693-9968712 MS.gene54879:intron 25.0%
!! TATGTTGTTTGTTCATGATT+TGG - chr2.1:9969533-9969552 None:intergenic 25.0%
!! TCATTGAAGATATTTTGCAT+TGG - chr2.1:9968685-9968704 None:intergenic 25.0%
!! TTTAACTTCTAATGCAAATC+AGG + chr2.1:9968927-9968946 MS.gene54879:intron 25.0%
!! TTTGGAATTTCACATACTTT+AGG + chr2.1:9969292-9969311 MS.gene54879:intron 25.0%
!! TTTGTTTGTTACATACTAGA+TGG + chr2.1:9968812-9968831 MS.gene54879:intron 25.0%
!! TTTTCTTTTTGTAAGTTGCA+TGG - chr2.1:9967331-9967350 None:intergenic 25.0%
!!! TCTCTAACTTTTGTTTATTG+TGG + chr2.1:9968072-9968091 MS.gene54879:intron 25.0%
!!! TTCAAGTTTTGCTTATGTTT+AGG - chr2.1:9969738-9969757 None:intergenic 25.0%
AATTTCTGTCTCCTTTACTT+TGG + chr2.1:9969148-9969167 MS.gene54879:intron 30.0%
AGTGACTATGACAATGTAAT+TGG + chr2.1:9968117-9968136 MS.gene54879:CDS 30.0%
ATGAATTGTTGAAGCAGAAT+AGG + chr2.1:9967533-9967552 MS.gene54879:CDS 30.0%
CGTGTATACATATATGTTCA+TGG + chr2.1:9970092-9970111 MS.gene54879:intron 30.0%
GAAGAGTTATAGAGAGAATA+TGG + chr2.1:9969899-9969918 MS.gene54879:CDS 30.0%
TATGAAAATTGGAAATGCAG+GGG + chr2.1:9970319-9970338 MS.gene54879:intron 30.0%
TCATTTAAACTTACAGACAG+TGG - chr2.1:9969704-9969723 None:intergenic 30.0%
TCTGAATTATGAATCTTGCA+TGG + chr2.1:9968196-9968215 MS.gene54879:intron 30.0%
TGAACATATATGTATACACG+TGG - chr2.1:9970092-9970111 None:intergenic 30.0%
TTTCTGCTTACTTTCAGATA+TGG - chr2.1:9968150-9968169 None:intergenic 30.0%
! CAAATGGTGTAAAAGCATAT+TGG - chr2.1:9968246-9968265 None:intergenic 30.0%
! GAGTGTTTAGATTTGTTTGT+AGG + chr2.1:9967867-9967886 MS.gene54879:intron 30.0%
! GATTTGGTTTCTAAACCATA+AGG - chr2.1:9969517-9969536 None:intergenic 30.0%
! GGAATTTTGAACTTCATTGA+TGG + chr2.1:9968363-9968382 MS.gene54879:intron 30.0%
!! AAGCTAAGTTGATGTATCAT+AGG - chr2.1:9967943-9967962 None:intergenic 30.0%
!!! ACAATTTTTTTCCTTACCCA+TGG + chr2.1:9968605-9968624 MS.gene54879:intron 30.0%
AACACCAATTAAGGGAACTA+AGG - chr2.1:9969854-9969873 None:intergenic 35.0%
ACACCAATTAAGGGAACTAA+GGG - chr2.1:9969853-9969872 None:intergenic 35.0%
AGACTTACAAATCCTTAGAC+AGG - chr2.1:9968223-9968242 None:intergenic 35.0%
AGAGTAATCAGCCAAAGTAA+AGG - chr2.1:9969162-9969181 None:intergenic 35.0%
CATATAGTTGAAGAACAGGT+AGG - chr2.1:9968739-9968758 None:intergenic 35.0%
CATGTCATACTAATCTGTGT+TGG + chr2.1:9969249-9969268 MS.gene54879:intron 35.0%
CTACAAGTGATGGTTATTGA+GGG + chr2.1:9969183-9969202 MS.gene54879:intron 35.0%
CTGCATCAAACACCAATTAA+GGG - chr2.1:9969862-9969881 None:intergenic 35.0%
GAAATTGTTCCATCATACCT+CGG - chr2.1:9970239-9970258 None:intergenic 35.0%
GAGTGAAATCCACATAACAA+AGG - chr2.1:9969320-9969339 None:intergenic 35.0%
GTATCCTGCATATTGTTTCA+GGG + chr2.1:9970121-9970140 MS.gene54879:intron 35.0%
GTCGTAACGAATATTTGCAT+AGG - chr2.1:9969615-9969634 None:intergenic 35.0%
GTTATGTGGATTTCACTCTT+TGG + chr2.1:9969322-9969341 MS.gene54879:CDS 35.0%
TCTGCATCAAACACCAATTA+AGG - chr2.1:9969863-9969882 None:intergenic 35.0%
TGCAAATCAGGACAAACTAA+TGG + chr2.1:9968939-9968958 MS.gene54879:intron 35.0%
TGTATCCTGCATATTGTTTC+AGG + chr2.1:9970120-9970139 MS.gene54879:intron 35.0%
TTCTCTATAGGTCTGCTTTA+CGG + chr2.1:9969570-9969589 MS.gene54879:intron 35.0%
TTGTGTTTGTTCATGAAGGT+TGG + chr2.1:9967907-9967926 MS.gene54879:intron 35.0%
TTTCCCTTAGTTCCCTTAAT+TGG + chr2.1:9969847-9969866 MS.gene54879:intron 35.0%
! AAAGCTTCATGACATGGTTT+TGG + chr2.1:9969274-9969293 MS.gene54879:intron 35.0%
! ACTTCATTGATGGTTGAAGT+AGG + chr2.1:9968373-9968392 MS.gene54879:intron 35.0%
! CAGCAGCATTAAACATCTTT+TGG - chr2.1:9967672-9967691 None:intergenic 35.0%
! CTTCAATGATTTGTGTATGG+AGG + chr2.1:9968696-9968715 MS.gene54879:intron 35.0%
! CTTTAGGTTCCTTTGTTATG+TGG + chr2.1:9969308-9969327 MS.gene54879:intron 35.0%
! GCATAAGCAGCTAATTCTTT+TGG + chr2.1:9969051-9969070 MS.gene54879:intron 35.0%
! TGATTTTCGCAACTTCCTTA+TGG + chr2.1:9969499-9969518 MS.gene54879:intron 35.0%
!! CACTTTTAGGTCATTGCTTT+AGG + chr2.1:9968902-9968921 MS.gene54879:intron 35.0%
!! TTTTTCAGAATGCCTAGACT+GGG + chr2.1:9969998-9970017 MS.gene54879:CDS 35.0%
AGATATCTAAGTTCTCCAGC+AGG - chr2.1:9969975-9969994 None:intergenic 40.0%
AGTTATCACCAATCTGACCA+TGG - chr2.1:9968625-9968644 None:intergenic 40.0%
ATAGACATTGAGGTAGGACT+TGG + chr2.1:9969948-9969967 MS.gene54879:CDS 40.0%
CCTTATGATGTCACCATAAG+CGG + chr2.1:9970367-9970386 MS.gene54879:CDS 40.0%
CGCTTATGGTGACATCATAA+GGG - chr2.1:9970369-9970388 None:intergenic 40.0%
CTACTGATAGACATTGAGGT+AGG + chr2.1:9969942-9969961 MS.gene54879:CDS 40.0%
CTGTGTCTGCTAATGACAAT+AGG + chr2.1:9967503-9967522 MS.gene54879:CDS 40.0%
GAATATTTGCATAGGCAACG+CGG - chr2.1:9969607-9969626 None:intergenic 40.0%
GACTGGGTATTTCTTGGTAT+TGG + chr2.1:9970014-9970033 MS.gene54879:CDS 40.0%
GATATCTAAGTTCTCCAGCA+GGG - chr2.1:9969974-9969993 None:intergenic 40.0%
GATTACTCTGCTACAAGTGA+TGG + chr2.1:9969173-9969192 MS.gene54879:intron 40.0%
GCTACAAGTGATGGTTATTG+AGG + chr2.1:9969182-9969201 MS.gene54879:intron 40.0%
GCTTTACTCATGATGCTGAA+AGG + chr2.1:9970173-9970192 MS.gene54879:CDS 40.0%
GGCAAGCAGAGATAAAAACT+TGG - chr2.1:9967711-9967730 None:intergenic 40.0%
GTGAGTCTTCACATACACTA+AGG - chr2.1:9968587-9968606 None:intergenic 40.0%
GTTATCACCAATCTGACCAT+GGG - chr2.1:9968624-9968643 None:intergenic 40.0%
TACCAAGAAATACCCAGTCT+AGG - chr2.1:9970013-9970032 None:intergenic 40.0%
TGAACAAAAGGATGGATCAG+TGG + chr2.1:9967366-9967385 MS.gene54879:intron 40.0%
TGAGCTACTGATAGACATTG+AGG + chr2.1:9969938-9969957 MS.gene54879:CDS 40.0%
TTGGTGAAAGCTTCATGACA+TGG + chr2.1:9969268-9969287 MS.gene54879:intron 40.0%
TTGTGCACACAGAACCAAAA+GGG - chr2.1:9967482-9967501 None:intergenic 40.0%
! AACCATGCTGACTACCTAAA+AGG - chr2.1:9968844-9968863 None:intergenic 40.0%
! CTAGATGGCATTCACCTTTT+AGG + chr2.1:9968827-9968846 MS.gene54879:intron 40.0%
!!! CTTTTTCAGAATGCCTAGAC+TGG + chr2.1:9969997-9970016 MS.gene54879:CDS 40.0%
AAAAGGATGGATCAGTGGTG+GGG + chr2.1:9967371-9967390 MS.gene54879:intron 45.0%
AAACAGCATCTCGTCTTTCG+CGG + chr2.1:9969348-9969367 MS.gene54879:CDS 45.0%
AAATTGGAAATGCAGGGGAC+AGG + chr2.1:9970324-9970343 MS.gene54879:intron 45.0%
AAGGCACGTTCGAAGAAACA+AGG + chr2.1:9967427-9967446 MS.gene54879:CDS 45.0%
ACAAAAGGATGGATCAGTGG+TGG + chr2.1:9967369-9967388 MS.gene54879:intron 45.0%
AGAGGGATGTTGTGGATTTG+AGG + chr2.1:9967455-9967474 MS.gene54879:CDS 45.0%
AGCACCCTGAAACAATATGC+AGG - chr2.1:9970128-9970147 None:intergenic 45.0%
AGGCACGTTCGAAGAAACAA+GGG + chr2.1:9967428-9967447 MS.gene54879:CDS 45.0%
AGGTGATGCATCACAGAGAA+TGG + chr2.1:9967573-9967592 MS.gene54879:CDS 45.0%
ATATCTGGCCTCACTAATCC+TGG - chr2.1:9970398-9970417 None:intergenic 45.0%
ATCTTGCATGGTCCTGTCTA+AGG + chr2.1:9968208-9968227 MS.gene54879:intron 45.0%
CAAAAGGATGGATCAGTGGT+GGG + chr2.1:9967370-9967389 MS.gene54879:intron 45.0%
CCGCTTATGGTGACATCATA+AGG - chr2.1:9970370-9970389 None:intergenic 45.0%
CGCGGTTTCTTGGTAAAACA+GGG + chr2.1:9969366-9969385 MS.gene54879:CDS 45.0%
CTTGTGCACACAGAACCAAA+AGG - chr2.1:9967483-9967502 None:intergenic 45.0%
GAAGAAACAAGGGAGGAAGA+GGG + chr2.1:9967438-9967457 MS.gene54879:CDS 45.0%
TATGGTGACATCATAAGGGC+TGG - chr2.1:9970365-9970384 None:intergenic 45.0%
TCGCGGTTTCTTGGTAAAAC+AGG + chr2.1:9969365-9969384 MS.gene54879:CDS 45.0%
TGCCTAGACTGGGTATTTCT+TGG + chr2.1:9970008-9970027 MS.gene54879:CDS 45.0%
TTCCTTACCCATGGTCAGAT+TGG + chr2.1:9968614-9968633 MS.gene54879:intron 45.0%
TTGCGTGCTGAACAAAAGGA+TGG + chr2.1:9967358-9967377 MS.gene54879:intron 45.0%
! CAGTCTTATAAGCGTGTACG+TGG + chr2.1:9970205-9970224 MS.gene54879:CDS 45.0%
! TGTGGATTTGAGGACCCTTT+TGG + chr2.1:9967465-9967484 MS.gene54879:CDS 45.0%
!! ACACAGGTTGGTGAACTTGA+TGG + chr2.1:9967400-9967419 MS.gene54879:CDS 45.0%
!! AGGAAGCATTCTTGTCCTTC+AGG + chr2.1:9967553-9967572 MS.gene54879:CDS 45.0%
!! AGGTGGTTTTTGCCACTTGA+AGG + chr2.1:9968294-9968313 MS.gene54879:CDS 45.0%
!! AGGTTGGTGAACTTGATGGA+GGG + chr2.1:9967404-9967423 MS.gene54879:CDS 45.0%
!! CACCTTTTAGGTAGTCAGCA+TGG + chr2.1:9968839-9968858 MS.gene54879:intron 45.0%
!! TGGTTTTTGCCACTTGAAGG+TGG + chr2.1:9968297-9968316 MS.gene54879:CDS 45.0%
!! AAAAAAAAAATATTGAAATA+TGG - chr2.1:9967966-9967985 None:intergenic 5.0%
!!! TCAATATTTTTTTTTTTTTA+TGG + chr2.1:9967970-9967989 MS.gene54879:intron 5.0%
AATCCTGGACTCACCGCTTA+TGG - chr2.1:9970383-9970402 None:intergenic 50.0%
ACCATCTGGAGAAGAAGAGG+AGG - chr2.1:9969428-9969447 None:intergenic 50.0%
ACCTCCTCTTCTTCTCCAGA+TGG + chr2.1:9969424-9969443 MS.gene54879:CDS 50.0%
ATAGGCAACGCGGAGTTTGA+AGG - chr2.1:9969597-9969616 None:intergenic 50.0%
CACCAATCTGACCATGGGTA+AGG - chr2.1:9968619-9968638 None:intergenic 50.0%
CACGTTCGAAGAAACAAGGG+AGG + chr2.1:9967431-9967450 MS.gene54879:CDS 50.0%
CGAACCATCTGGAGAAGAAG+AGG - chr2.1:9969431-9969450 None:intergenic 50.0%
CGAAGAAACAAGGGAGGAAG+AGG + chr2.1:9967437-9967456 MS.gene54879:CDS 50.0%
CTCTGTGATGCATCACCTGA+AGG - chr2.1:9967571-9967590 None:intergenic 50.0%
CTTATAAGCGTGTACGTGGC+AGG + chr2.1:9970209-9970228 MS.gene54879:CDS 50.0%
GCTTATGCCCTCTACAACCA+AGG - chr2.1:9969039-9969058 None:intergenic 50.0%
GTCGTTGCGTGCTGAACAAA+AGG + chr2.1:9967354-9967373 MS.gene54879:intron 50.0%
TCCTTGAGACCACCTTCAAG+TGG - chr2.1:9968309-9968328 None:intergenic 50.0%
TCTCGTCTTTCGCGGTTTCT+TGG + chr2.1:9969356-9969375 MS.gene54879:CDS 50.0%
TGAAGGTGGTCTCAAGGACA+AGG + chr2.1:9968311-9968330 MS.gene54879:CDS 50.0%
TGGTGAACTTGATGGAGGGA+AGG + chr2.1:9967408-9967427 MS.gene54879:CDS 50.0%
!! CAGGTTGGTGAACTTGATGG+AGG + chr2.1:9967403-9967422 MS.gene54879:CDS 50.0%
!! CTTTGGAGTCACGAACCATC+TGG - chr2.1:9969442-9969461 None:intergenic 50.0%
AGCCAACAAGCTTGCAGGAC+TGG + chr2.1:9968979-9968998 MS.gene54879:intron 55.0%
AGGGAGGAAGAGGGATGTTG+TGG + chr2.1:9967447-9967466 MS.gene54879:CDS 55.0%
CTACCAGCCAACAAGCTTGC+AGG + chr2.1:9968974-9968993 MS.gene54879:intron 55.0%
CTCCAGTCCTGCAAGCTTGT+TGG - chr2.1:9968984-9969003 None:intergenic 55.0%
GAATGCGATTGAAGCGCGCA+TGG + chr2.1:9967609-9967628 MS.gene54879:CDS 55.0%
GCCACTTGAAGGTGGTCTCA+AGG + chr2.1:9968305-9968324 MS.gene54879:CDS 55.0%
GTGGGGAGTAGAACACAGGT+TGG + chr2.1:9967388-9967407 MS.gene54879:CDS 55.0%
TCACCATAAGCGGTGAGTCC+AGG + chr2.1:9970377-9970396 MS.gene54879:CDS 55.0%
TGCCCTCTACAACCAAGGTG+CGG - chr2.1:9969034-9969053 None:intergenic 55.0%
! AGTGGTGGGGAGTAGAACAC+AGG + chr2.1:9967384-9967403 MS.gene54879:CDS 55.0%
! ATAAGGGCTGGTGCACCTAC+TGG - chr2.1:9970353-9970372 None:intergenic 55.0%
! CGGTGAGTCCAGGATTAGTG+AGG + chr2.1:9970387-9970406 MS.gene54879:CDS 55.0%
! GCAGGTTGACCGAGGTATGA+TGG + chr2.1:9970227-9970246 MS.gene54879:intron 55.0%
!! AGTCCTGCAAGCTTGTTGGC+TGG - chr2.1:9968980-9968999 None:intergenic 55.0%
ACGCCGCACCTTGGTTGTAG+AGG + chr2.1:9969028-9969047 MS.gene54879:intron 60.0%
CGCCGCACCTTGGTTGTAGA+GGG + chr2.1:9969029-9969048 MS.gene54879:intron 60.0%
GCGATTGAAGCGCGCATGGT+TGG + chr2.1:9967613-9967632 MS.gene54879:intron 60.0%
! TGTACGTGGCAGGTTGACCG+AGG + chr2.1:9970219-9970238 MS.gene54879:intron 60.0%
ACGTCTGCAACGCCGCACCT+TGG + chr2.1:9969019-9969038 MS.gene54879:intron 65.0%
GAGGTAGGACTTGGCCCTGC+TGG + chr2.1:9969957-9969976 MS.gene54879:CDS 65.0%
GCAGGGGACAGGCTTCCAGT+AGG + chr2.1:9970335-9970354 MS.gene54879:intron 65.0%
! GAAGCGCGCATGGTTGGTGC+TGG + chr2.1:9967619-9967638 MS.gene54879:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 9967289 9970426 9967289 ID=MS.gene54879
chr2.1 mRNA 9967289 9970426 9967289 ID=MS.gene54879.t1;Parent=MS.gene54879
chr2.1 exon 9967289 9967300 9967289 ID=MS.gene54879.t1.exon1;Parent=MS.gene54879.t1
chr2.1 CDS 9967289 9967300 9967289 ID=cds.MS.gene54879.t1;Parent=MS.gene54879.t1
chr2.1 exon 9967376 9967630 9967376 ID=MS.gene54879.t1.exon2;Parent=MS.gene54879.t1
chr2.1 CDS 9967376 9967630 9967376 ID=cds.MS.gene54879.t1;Parent=MS.gene54879.t1
chr2.1 exon 9968102 9968158 9968102 ID=MS.gene54879.t1.exon3;Parent=MS.gene54879.t1
chr2.1 CDS 9968102 9968158 9968102 ID=cds.MS.gene54879.t1;Parent=MS.gene54879.t1
chr2.1 exon 9968270 9968332 9968270 ID=MS.gene54879.t1.exon4;Parent=MS.gene54879.t1
chr2.1 CDS 9968270 9968332 9968270 ID=cds.MS.gene54879.t1;Parent=MS.gene54879.t1
chr2.1 exon 9969314 9969445 9969314 ID=MS.gene54879.t1.exon5;Parent=MS.gene54879.t1
chr2.1 CDS 9969314 9969445 9969314 ID=cds.MS.gene54879.t1;Parent=MS.gene54879.t1
chr2.1 exon 9969882 9970046 9969882 ID=MS.gene54879.t1.exon6;Parent=MS.gene54879.t1
chr2.1 CDS 9969882 9970046 9969882 ID=cds.MS.gene54879.t1;Parent=MS.gene54879.t1
chr2.1 exon 9970142 9970230 9970142 ID=MS.gene54879.t1.exon7;Parent=MS.gene54879.t1
chr2.1 CDS 9970142 9970230 9970142 ID=cds.MS.gene54879.t1;Parent=MS.gene54879.t1
chr2.1 exon 9970339 9970426 9970339 ID=MS.gene54879.t1.exon8;Parent=MS.gene54879.t1
chr2.1 CDS 9970339 9970426 9970339 ID=cds.MS.gene54879.t1;Parent=MS.gene54879.t1
Gene Sequence

>MS.gene54879

ATGGTGCATCTGGTATGTACAGAAATTTGAATTCATTGGCCATGCAACTTACAAAAAGAAAATGTGTCGTTGCGTGCTGAACAAAAGGATGGATCAGTGGTGGGGAGTAGAACACAGGTTGGTGAACTTGATGGAGGGAAGGCACGTTCGAAGAAACAAGGGAGGAAGAGGGATGTTGTGGATTTGAGGACCCTTTTGGTTCTGTGTGCACAAGCTGTGTCTGCTAATGACAATAGGACTGCTAATGAATTGTTGAAGCAGAATAGGAAGCATTCTTGTCCTTCAGGTGATGCATCACAGAGAATGGCTCATTACTTTGCGAATGCGATTGAAGCGCGCATGGTTGGTGCTGGTACCAGTACACAAATATTATATATGAGCCAAAAGATGTTTAATGCTGCTGATTTCTTGAAAGCTTACCAAGTTTTTATCTCTGCTTGCCCTTTCAAAAAATTTGCACATTTCTTTGCAAATATTAGCTTTCATTTTTGTGTGTTTAGATTCATTCGAATCAATTTTATTGCTATCAAAGACCAAAATTGCCATGTTTTTTAAAGATGTATGTTTGGATTGGCTGTGAGTGTTTAGATTTGTTTGTAGGAATTCTGACTTTTATAATTGTGTTTGTTCATGAAGGTTGGTGAAGATGATCCTATGATACATCAACTTAGCTTCCATATTTCAATATTTTTTTTTTTTTATGGCTGAAATATATGTTGTTTTGTAAATAGGAAACTTCTATTTGATTAGGTAGATTTGCTCATTTTTCCCTTAATTTTCTCATCTCTAACTTTTGTTTATTGTGGTACACAGATTCAAGTCAACAGAAGTGACTATGACAATGTAATTGGAGCTTTGCCATATCTGAAAGTAAGCAGAAAAGCTATGTAAATGTTGTGTTTGCAAATCTGAATTATGAATCTTGCATGGTCCTGTCTAAGGATTTGTAAGTCTCCAATATGCTTTTACACCATTTGAAAGTTGTTTTATTTTACAAATGAATTGAGGTGGTTTTTGCCACTTGAAGGTGGTCTCAAGGACAAGGTAAAGCATAGAACACATATAATTGTGTTTGGAATTTTGAACTTCATTGATGGTTGAAGTAGGTATTTATTGAATAAATGGTATGTATATTATCTTGCATATGGACTGTTATAAGTATGTATGTATCTTAGTCACAAATTATTGAGAAATAATGTTGGTTTATGTTATAATAATGAGTGAATAGGATAAAAATTAATTTTTGATTCATTTCATTCTTTTAGTTCCTGATGATTATATTTAGGTTTGTTGTTCCTTAGTGTATGTGAAGACTCACAATTTTTTTCCTTACCCATGGTCAGATTGGTGATAACTTATTTTATGCAGCAGCAATTGCAATGCATTGTTGCAGCCAATGCAAAATATCTTCAATGATTTGTGTATGGAGGAATTTGTTACTTTGTTTCCTACCTGTTCTTCAACTATATGAATTTCAGAATTTGGCTTAATTATATACAAGATAAGTTCATTCCCACCATATTTTTGTTTGTTACATACTAGATGGCATTCACCTTTTAGGTAGTCAGCATGGTTAATATTTGAAACACATGTATAATTTATATAGTTAGTATCACTTTTAGGTCATTGCTTTAGGCATTTAACTTCTAATGCAAATCAGGACAAACTAATGGACTTATTGCTCGCTACCAGCCAACAAGCTTGCAGGACTGGAGCCTATTAATTTTATTACGTCTGCAACGCCGCACCTTGGTTGTAGAGGGCATAAGCAGCTAATTCTTTTGGACATGTAGTATATCATGTTTTCTTTTATTAAATTTTGTGTGAGTTGTCTGATGAAACTTTACTGCAAATAATGTAATTTCTGTCTCCTTTACTTTGGCTGATTACTCTGCTACAAGTGATGGTTATTGAGGGTAATTAAATAGGAGTTTGCAACATCATTGTGTAAAAAAATATGCATGTCATACTAATCTGTGTTGGTGAAAGCTTCATGACATGGTTTTGGAATTTCACATACTTTAGGTTCCTTTGTTATGTGGATTTCACTCTTTGGAGAAAACAGCATCTCGTCTTTCGCGGTTTCTTGGTAAAACAGGGAAGCATTTATTTTTATCTGATGGTAAGAATGAAAAACCTCCTCTTCTTCTCCAGATGGTTCGTGACTCCAAAGATATTAAATTCATGTAAGGTTTATTGTTCGTTTAGTTTGATTTTCGCAACTTCCTTATGGTTTAGAAACCAAATCATGAACAAACAACATACAACATATTATATCTCTTTCTCTATAGGTCTGCTTTACGGTCCTTCAAACTCCGCGTTGCCTATGCAAATATTCGTTACGACCGTATTCTTTTGTTTTAGTTCAGATACATTAACCTTTGCATATTCTATTACTATCACAATTAATTTCCACTGTCTGTAAGTTTAAATGAATAACTTGACTCCTAAACATAAGCAAAACTTGAAAATTGTTTTTCGACCACTTTTTATTATTACTTCTTTCACTAACTTTGTCACGTATTTAGCAATGACATATAAAAAATTGTATTTCACTTTTTCCCTTAGTTCCCTTAATTGGTGTTTGATGCAGATGTATAGCGACTATATGAAGAGTTATAGAGAGAATATGGCAAATTTCTTAGAATCTGAGCTACTGATAGACATTGAGGTAGGACTTGGCCCTGCTGGAGAACTTAGATATCTTTCTTTTTCAGAATGCCTAGACTGGGTATTTCTTGGTATTGGAGAATTTAATGTGAGTTTGTGTATTTTTTGTTGTAGAAATTTGTGCACAGTTCCACGTGTATACATATATGTTCATGGTCATTTGTATCCTGCATATTGTTTCAGGGTGCTCATGATGCCGAGATTCTTACATTAAGCTTTACTCATGATGCTGAAAGGTGTAGTTATCAGTCTTATAAGCGTGTACGTGGCAGGTTGACCGAGGTATGATGGAACAATTTCATACGATGACTTGCCATTTTACTAAAATTTGTTATGTAATGTTTAATGTTGGAATATTTATATGAAAATTGGAAATGCAGGGGACAGGCTTCCAGTAGGTGCACCAGCCCTTATGATGTCACCATAAGCGGTGAGTCCAGGATTAGTGAGGCCAGATATCATGCATGA
Protein sequence

>MS.gene54879.t1

MVHLDGSVVGSRTQVGELDGGKARSKKQGRKRDVVDLRTLLVLCAQAVSANDNRTANELLKQNRKHSCPSGDASQRMAHYFANAIEARMIQVNRSDYDNVIGALPYLKLFYFTNELRWFLPLEGGLKDKVPLLCGFHSLEKTASRLSRFLGKTGKHLFLSDGKNEKPPLLLQMMYSDYMKSYRENMANFLESELLIDIEVGLGPAGELRYLSFSECLDWVFLGIGEFNGAHDAEILTLSFTHDAERCSYQSYKRVRGRGQASSRCTSPYDVTISGESRISEARYHA